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Gene: Rps6kc1 (ribosomal protein S6 kinase C1) Rattus norvegicus

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Symbol:

Rps6kc1

Name:

ribosomal protein S6 kinase C1

RGD ID:

1306578

Description:

Predicted to enable ATP binding activity; phosphatidylinositol binding activity; and protein serine/threonine kinase activity. Predicted to be located in endosome; lysosome; and membrane. Predicted to be active in early endosome and postsynaptic density. Orthologous to human RPS6KC1 (ribosomal protein S6 kinase C1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC289342; ribosomal protein S6 kinase delta-1; ribosomal protein S6 kinase, 52kDa, polypeptide 1; ribosomal protein S6 kinase, polypeptide 1; ribosomal protein S6 kinase, polypeptide C1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPS6KC1 (ribosomal protein S6 kinase C1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Rps6kc1 (ribosomal protein S6 kinase polypeptide 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rps6kc1 (ribosomal protein S6 kinase C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPS6KC1 (ribosomal protein S6 kinase C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPS6KC1 (ribosomal protein S6 kinase C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rps6kc1 (ribosomal protein S6 kinase C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPS6KC1 (ribosomal protein S6 kinase C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RPS6KC1 (ribosomal protein S6 kinase C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rps6kc1 (ribosomal protein S6 kinase C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rps6kc1 (ribosomal protein S6 kinase C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ACTR3 (actin related protein 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RPS6KC1 (ribosomal protein S6 kinase C1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rps6kc1 (ribosomal protein S6 kinase polypeptide 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rps6kc1 (ribosomal protein S6 kinase polypeptide 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rskd-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rskd-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7156	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rps6kc1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rps6kc1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	104,877,296 - 105,021,490 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	104,877,296 - 105,021,435 (-)	Ensembl				GRCr8
mRatBN7.2	13	102,346,160 - 102,491,000 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	102,346,160 - 102,490,303 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	104,866,235 - 105,010,379 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	106,250,216 - 106,394,359 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	103,465,218 - 103,609,348 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	109,338,761 - 109,589,209 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	109,338,762 - 109,483,891 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	113,940,375 - 114,084,609 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	106,842,538 - 106,989,914 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	101,819,362 - 101,958,886 (-)	NCBI		Celera
RGSC_v3.1	13	107,032,348 - 107,186,512 (-)	NCBI
Cytogenetic Map	13	q27	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Developmental Disabilities (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

bortezomib (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

choline (ISO)

ciglitazone (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

coumarin (ISO)

cyclosporin A (ISO)

DDT (EXP)

dicrotophos (ISO)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

furan (EXP)

gallic acid (ISO)

glyphosate (EXP)

L-methionine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mercury atom (ISO)

mercury(0) (ISO)

methoxychlor (EXP)

N,N-diethyl-m-toluamide (EXP)

paracetamol (EXP,ISO)

PCB138 (ISO)

permethrin (EXP)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

resveratrol (ISO)

rotenone (EXP)

sodium arsenite (ISO)

sunitinib (ISO)

thioacetamide (EXP)

thiram (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IEA)

early endosome (IBA,IEA,ISO)

endosome (IEA,ISO)

lysosome (IEA,ISO)

membrane (IEA)

organelle (IEA)

postsynaptic density (ISO)

Molecular Function

ATP binding (IEA)

kinase activity (IEA)

lipid binding (IEA)

nucleotide binding (IEA)

phosphatidylinositol binding (IEA)

protein binding (ISO)

protein kinase activity (IEA,ISO)

protein serine/threonine kinase activity (IEA)

transferase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15750338	PMID:25211037

Genomics

Comparative Map Data

Rps6kc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	104,877,296 - 105,021,490 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	104,877,296 - 105,021,435 (-)	Ensembl				GRCr8
mRatBN7.2	13	102,346,160 - 102,491,000 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	102,346,160 - 102,490,303 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	104,866,235 - 105,010,379 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	106,250,216 - 106,394,359 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	103,465,218 - 103,609,348 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	109,338,761 - 109,589,209 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	109,338,762 - 109,483,891 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	113,940,375 - 114,084,609 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	106,842,538 - 106,989,914 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	101,819,362 - 101,958,886 (-)	NCBI		Celera
RGSC_v3.1	13	107,032,348 - 107,186,512 (-)	NCBI
Cytogenetic Map	13	q27	NCBI

RPS6KC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	213,051,241 - 213,862,735 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	213,051,233 - 213,274,774 (+)	Ensembl			hg38	GRCh38
GRCh37	1	213,224,583 - 213,448,117 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	211,291,220 - 211,513,431 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	209,612,991 - 209,835,202	NCBI
Celera	1	186,446,090 - 186,668,258 (+)	NCBI		Celera
Cytogenetic Map	1	q32.3	NCBI
HuRef	1	183,899,388 - 184,120,831 (+)	NCBI		HuRef
CHM1_1	1	214,496,914 - 214,719,164 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	212,294,330 - 213,102,289 (+)	NCBI		T2T-CHM13v2.0

Rps6kc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	190,505,076 - 190,645,207 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	190,432,399 - 190,643,967 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	190,772,879 - 190,913,010 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	190,700,202 - 190,911,770 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	192,596,758 - 192,735,649 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	192,496,684 - 192,612,385 (-)	NCBI		MGSCv36	mm8
Celera	1	197,692,126 - 197,832,214 (-)	NCBI		Celera
Cytogenetic Map	1	H6	NCBI
cM Map	1	96.2	NCBI

Rps6kc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	4,381,867 - 4,543,029 (-)	Ensembl
ChiLan1.0	NW_004955406	4,382,931 - 4,542,926 (-)	NCBI	ChiLan1.0	ChiLan1.0

RPS6KC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	36,135,620 - 36,348,922 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	36,100,263 - 36,313,175 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	188,622,154 - 188,834,327 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	193,479,905 - 193,689,809 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	193,479,905 - 193,689,809 (+)	Ensembl			panPan2	panpan1.1

RPS6KC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	11,152,316 - 11,329,244 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	11,152,328 - 11,329,244 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	10,726,946 - 10,904,184 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	10,858,720 - 11,035,857 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	10,858,707 - 11,035,852 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	10,779,585 - 10,956,362 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	10,883,115 - 11,060,549 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	11,006,566 - 11,183,987 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rps6kc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	63,118,002 - 63,338,011 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936557	358,221 - 578,453 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936557	361,071 - 578,298 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPS6KC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	130,255,308 - 130,435,315 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	130,222,631 - 130,453,584 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	143,181,977 - 143,279,842 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPS6KC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	16,298,782 - 16,510,108 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	16,297,144 - 16,510,023 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	16,787,227 - 17,004,837 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rps6kc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624771	18,375,831 - 18,561,288 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rps6kc1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	68,855,908 - 68,997,553 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rps6kc1
718 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	332
Count of miRNA genes:	192
Interacting mature miRNAs:	226
Transcripts:	ENSRNOT00000067017
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

BE121073

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	102,386,664 - 102,386,842 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	109,379,255 - 109,379,432	NCBI	Rnor6.0
Rnor_5.0	13	113,980,783 - 113,980,960	UniSTS	Rnor5.0
RGSC_v3.4	13	106,882,931 - 106,883,108	UniSTS	RGSC3.4
Celera	13	101,859,811 - 101,859,988	UniSTS
RH 3.4 Map	13	720.2	UniSTS
Cytogenetic Map	13	q27	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001415789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC064438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000067017 ⟹ ENSRNOP00000062125

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	104,877,296 - 105,021,435 (-)	Ensembl
mRatBN7.2 Ensembl	13	102,346,161 - 102,490,298 (-)	Ensembl
Rnor_6.0 Ensembl	13	109,338,762 - 109,483,868 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087305 ⟹ ENSRNOP00000075665

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	104,877,296 - 105,021,435 (-)	Ensembl
mRatBN7.2 Ensembl	13	102,346,160 - 102,490,286 (-)	Ensembl
Rnor_6.0 Ensembl	13	109,338,767 - 109,483,891 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105727 ⟹ ENSRNOP00000088465

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	104,885,698 - 105,021,435 (-)	Ensembl
mRatBN7.2 Ensembl	13	102,359,706 - 102,490,303 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110098 ⟹ ENSRNOP00000085010

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	104,877,296 - 105,021,435 (-)	Ensembl
mRatBN7.2 Ensembl	13	102,346,164 - 102,490,295 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000140777 ⟹ ENSRNOP00000104391

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	104,877,296 - 105,005,295 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000161908 ⟹ ENSRNOP00000103289

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	104,890,647 - 105,021,435 (-)	Ensembl

RefSeq Acc Id:

NM_001415789 ⟹ NP_001402718

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	104,877,296 - 105,021,435 (-)	NCBI
mRatBN7.2	13	102,346,160 - 102,490,294 (-)	NCBI

RefSeq Acc Id:

NM_001415790 ⟹ NP_001402719

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	104,877,296 - 105,021,435 (-)	NCBI
mRatBN7.2	13	102,346,160 - 102,490,294 (-)	NCBI

RefSeq Acc Id:

XM_008769830 ⟹ XP_008768052

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	104,877,296 - 105,021,489 (-)	NCBI
mRatBN7.2	13	102,346,160 - 102,490,354 (-)	NCBI
Rnor_6.0	13	109,338,761 - 109,483,924 (-)	NCBI

Sequence:

show sequence

GTGGTGATCCGGAAGCAGATCCAAGCGGCAGTCCCCAGGAGCCACCGCCCCCTCGTCGCGGCTC
TCGTGCTCTGTGCTGCGTGGAGTCTGCCGCGGCTGGGGCTGCCCGATGATCCCCAGCTGGCGGA
AGCACGGGCGGAGGGAGGATGACCTCTCCTTGGGGTCACAGTGCGGACCTGGCCCGCTTCTACA
CTGTCACCGAGCCCCAGCGACACCCTAGGGGCTACACGATCTATAAGGTTACCGCACGGGTCGT
TTCACGAAGAAATCCGGAGGACGTCCAGGAGATAATTGTGTGGAGAAGATACAGTGACTTTAAG
AAGCTGCACAGAGAGCTATGGCAGATTCACAGGAACGCATTTCGACACTCTGAGCTGTTTCCCC
CGTTTGCTAAAGGGACAGTGTTTGGGCGATTTGACAAAACCGTAATTGAGGAACGACGTCAGTG
TGCTGAGGACCTGCTACAGTTCTCTGCCAACATCCCTGCTCTGTACAACAGCAAGCAGCTCCAG
GACTTCTTTAAGGGTGGGATAATTAGTGATGGCTCTGAGTTAATTGGCCCTGCTGAAGCTTACC
CAGACTCCCTGGCCAACACCTTTTCTGAGTGTGGTACTGAAGGAGAGTCGAGCCCCACGCGCCG
GGAGGCTGTGAAGAGAAGGACAGCAGAGTACCTCATGCGTGCAGAGAGCATCTGTAGCCTCCGG
GTCACAGCCCAGCTTGACACAGGCCCACAGCCTCCAGGAGCACTAAGTTCAAGGCCCCCTTGGA
ACCTAAGGAGCCCTGCCGAGGAGCTGAAGGCCTTCAGAGTCCTTGGGGTGATTGACAAGGTTTT
ACTTGTAATGGACACAAGGACAGAACAGACATTCATTTTAAAAGGTCTCAGGAAAAGCAGCGAG
TGCAGCAGGAACAGGAAGACCATCATCCCCCGCTGTGTGCCTAACATGGTGTGTCTGCACACAT
ACATCATCTCGGAGGAGTCGGTGTTTCTCGTGCTGCAGCACGCCGAAGGTGGCAAACTCTGGTC
ATATATCAGTAAATTTCTGAACAGAAGCTCTCGAGAAAGCTTGGACATTAAGGAGGCGAGACCG
CCCATGCCTCCTCGAGTGCGCCTGCAGCAGCCAAGTGCTAGTCCTCAGGGCAGCTACAGTGTTG
AGTCCAGAGGGAGCGACACAGGGAGCATGCTGAAGGTTCTGCCCCTGAAGACTAGCCTCACCCC
GAGTTCTCAGGACGATAGTAACCAGGAAGATGATGGGCAGGACAGCTCTCCCAAGTGGCCCGAT
TCGGGCTCCAGCTCAGAGGAAGAGTGCACAGCTGGCTACTTAACGCTGTGCAACGAATATGGGC
AAGAAAAGCTTGACCTTACATCTTTGAATGAGGAGTCTGTCATGCAGCCTGAAGGGGAGAATGC
TGATAGCCAAGCTGTTAGGAGCTTCCCAGCATCCCTCACCGCTGACAGTGCAAGCCCCAGCACC
CAGCTCAAGTTCTTCCCTGGAGACGAGGGCCTAGAAGCAGTTTGTTCTCCTCGAACATCTGATT
CCCTCAGGAGGTCGAAAAACAGTCCTATGGAGTTCTTCCGAATAGACAGTAAAGACAGCACAAG
TGAGCTCTTGGGACTGGATTCTGGTGAGAAATTACACAGTCTGAAACCAGAGCCTTTGAAAGCA
CTCTTTACCCTTGAAGATGGAGACAGTCCTTCCCAGAGTTTTGATGCCGGCAAGAGCCAGGGAG
AGAGTGAAGCTCAGGACTCCATCAGCAGGGGCTCAGATGACTCCGTCCCGGTTATCTCATTTAA
AGAGGCTGCCTCTGAGGATGTCTGTAGTGCTGAGGAAGGGAGGCCTGACCTTCTTGTGAATCTA
CCTGGTGAACTGCAGCCAACCAAAGAGACTTCAGCAGTGGACCCTACTAAGTTTTCACAGGCCA
GCATAGGCAGGCTGGAAGCCCCGGATGTGTTGTGCCTCAGGCTGAGTTCTGAACAGTGCCATGA
CCTGGGACAAGAAGGCCCAGAGGAACTGAGCCATCCCACTGAATTCCGTCCTGGTGGTGTGACC
CCAGAGCGCAGTGCTCAGGCAGATCTTGGGGTGTTGTTCACGGCTACAGTTGATCACAGCAGCT
CACAAGACCAGTTTCTGTTTTCCAGCTTGCATTCAGAGTCTGACAGGCTGGGGCAGGTGGAGGG
AGCGGTCACTTCACAGGACTTGCAAGAAAGCCTATTCCACATTGCTAGTCCATGCTCAGGTGCT
AAAGAAGACAGCGCACACACAGACACTGCCACGTCTGAGGAAGTGCTGCTGTTCACAGAGCCGA
GCAAAGAAGGAGACTCGGAGGCCAAGGTGCGGAGTGTGGGAGCCGGGGGAGCGGAGAAGGAAGT
CCATCAGATCTTCGAGGACCTGGACCAGCGACTAGCAGTAAGCGCCAGGCTCTTCATCCCAGAG
GGCTGCATTCAAAGATGGGCAGCAGAGATGGTGGTAGCCCTGGACGCCTTGCATAGAGAGGGGA
TTGTGTGCCGAGATCTGAACCCAAACAACATCTTATTGAATGATGGAGGACACATTCAGCTAAC
GTATTTTAGCAGGTGGAGTGAGGTTGAAGATCTCTGTGACAGCGACGCCATAGCGAGAATGTAC
TGCGCCCCAGAGGTTGGAGCAGTCACAGAAGAAACTGAAGCCTGTGATTGGTGGAGCCTGGGTG
CTGTCCTCTTCGAACTTCTCACTGGCAAGACATTGGTGGAATGCCACCCAGCGGGAATAAATAC
TCACACTACTTTGAACATGCCAGATTGTGTTTCTGAAGAGGCCCGCTCACTCATCCAACAGCTC
CTGCAGTTCAACCCTATGGAGCGTCTGGGTGCAGGAGTGGCCGGTGTTGAAGATATCAAATCTC
ACCCGTTCTTCACCCCTGTGGATTGGGCAGAACTGACAAGATGAACATCACATGGAGTGTCCTT
ACAGGACAGATCCCCTTGTGACAGGAGTGGCTGGGCTTCAGGCACCCTGCAGCTAATGTGACAG
AGCCTTGGGACAAGGACCCTAAGGAAGTGATGGGGCAGGAGGCTAACAGATTTGCTTACACTTC
TGTCTGGAAAGGAACTGCTCGCCACGCCAGCAGCTGCTATGTGCACATCTCGCGATGAGATGTA
ACTTATTCAAGGTTGCGGGCATGTTGCAGACAAGACTGAAACATGAGTGCCTGTGTAACGCCTC
TGCCAGGGGGCTGGAACTGCAGAAGGAAGGTTGACGTGAGTCAAGGACCTTGTAGCAACCGATG
GTGTTTCTGCTAAGCAAGACTGGTTTACACAATAGCATCAATATTTGCTGAGTAACACTAAATG
TGCTCTGTGGACAGTGTCACTAGTGGGCTGGCAAAGCAAAGTGGCGTGCCCAGTGCTGAGCAGG
CCGGTTATCTCTGAGGAAAACCTCTCACCAGCTTAGAGCTTGCTGGTCAATGCTGCTAACTGAG
GGGCTCCTCTCTCCCCTGCCCTATTTCCTGCATTCTCTGCTTCTTCTCTTGGATTCCGCCTTTC
CTACTTCTGTTAACACACATGCAACGAGAAAGGGAAGGGGCATTTATTCCCCAAACTGCCATCT
TAACAGGACTAAGAAATCATGGTGTCAAATAAATGTGACTAAACCTTG

hide sequence

RefSeq Acc Id:

XM_008769832 ⟹ XP_008768054

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	104,877,296 - 104,921,883 (-)	NCBI
mRatBN7.2	13	102,346,160 - 102,390,747 (-)	NCBI
Rnor_6.0	13	109,338,761 - 109,387,307 (-)	NCBI

Sequence:

show sequence

CTGAGCCAAATCCCCAACCTTTTTTTTTTCCTTTTTCCATTGCACAATTCTTGATCTTTTGGAT
TTATAGAGTATTCTTTTTGTTCCAAAGGACTCAGTTTCTTAAGATGTTTTCAGAAATTAAGACT
ATCAGGGTAGTTTTATCCTAGGACCCCAAACACTGTGATGTGAGGGGAATCGTCTCATGTTGCC
TTCTTTGGCCTATGTTGTCTGATCTCAGGTCTAGGAGGAGCAGGGACATGACCTGTCCTGTTGC
CCTGTGACACAGCATTACTGGACTTAGCCTCAAGGCCTTTTACTTATCTGTGGAGGAGATAACC
ACTGGATGCTGCCAGGTGGCAGGCACCGGTTAGGCGATGGGGCAGGTGCCGTCAGGCCTATGCT
TTTTGTTTAGATGGAGGGACCTATGTAGGCACGGGACGCTAGTGCAGCGGGAGGAGTCTGAGGA
GGCAGAGACACAGGGCTCTGGATGATGTGCATGGTCCTTTAACAGTTTACTCTTCCAAGTCCCA
GTTGTGTCTCCCACCAAATGTGCTCATGTCTGCTGCCCCCTTTCCTAGACTACAATTTACTTCT
TCAAGCTGGCCAGGGTGTCTTTTGATTAGCCTCATTTTTAAGTGTGCCCCTTCCAGTGTTTGCC
TCCATTAAAGTTAAATAGGCCCGACTTTCAGCCTGTTGCAATCCCTTGGCTCCTCCTTGTGTAT
TTTCTCCCTGGACAAATAGATTGCCCCACTTTTCCATGTTCCTGTTGCAGTACGTTCCCAGACC
CTTGGACAGAGGTCTGAAGTGCAGACACCCAGATCTTCCCAAGACCCTCTGGTCCTCAGACCTG
TAGCTCTCGCCTGTTGACATCCTGGGTACCGCTTTGCTCACACTTGCCTGTGATAGCTCAGGAC
TTTCTTCCCAGCCTCCTCTGCCACTTTCCAGCCACCAAGTCTTGAAGTGCGATCAGCTTTCTCT
GGCTCTTTTTTTGTGGAGGTATATAGGATTTTCATTTTGTTAGTTGTTCTGGGAACAAGATTGA
AATATGGATGATGGAATCCTGTCTAATCTGAAGTCTGTACCCATTCTCTCTCCCTATCTTCAAA
TGTTCTGTTTTCCATGTTTGGTCTGGTTCTCCTCCATCATTCATACTGAGTCTGCAGTCACTTA
TGATGGTGCTTTATAGAAATGAGACCCTACAACTAACAACTCCTGCATAACCTTCACACAGACC
TTAGGTGAAAGTTAGGCCTCCTGGTTGGGCTTCCCCAGCCTGCCTTGACTTGGCCCCTGCCCGC
CTCTCTTGCTGCTCATGGCTTCTTCCCCTGCAGAGCCATTGCCACCTCGGTGTTCTGTGGTTCT
GGCCCCGCTGTTGCTGTCTTGCAGGTCTGAAGCACATTCAGGGCAGCGTGCACCGATCATCACT
TTCCATCGTCTGCCCCTCTTCTCACCGTTCGTTTCTGCCTTCCTTTAAAGTTCTCTGCTTTCCT
CTGGGTTTATCTAGGTCTCTTTTACGTGGGCTCTTTTGTGCCTCAATTCATGCTTGTAGCACTG
GTCCACCCTGTGCACCACTTTCATTTATGTATCTTTTTCTTTTACATTTTGAAATAGTAGCCTC
AGCTGCCCAGGAAGTTACTATGTAGAGCGGGCCAGCCTTGAACTCAGATTAAAGATGCACACTG
CACACCTGGCAGGTCTTAGTTTTGATAGAGAGACACACTCTTAGCTTAAGGTGGCTGGAACCCG
CCATGTAGCCCCAGGCTGGCCTGGAGCTCAAGGTTGTCCTTCCAGCCTCTTAAGTGTGGGTTAT
AGGCAGGGGCCACTATGCCCAGCTCTGTGTAGTAGATTTTGATGTTTTCTGTGTCTTTTTCCAA
CAAGCCTTAGATTCCTCAAATGGCCAAGCATACTCACTGAATAATAATAACAGGAAGAGACAGT
AAGTGTGCTAGATGACCTCAGATGATCTGAAGGGTGTACACCTGCAGCATCTGCTGCCCCTGCC
CCTGCCCCTGCCCCTGCCCCCGCTCCCTCCCACCGAGCACACCTGCGGATTTCTGGCAGGTGCT
TGGCTGACCTGACAGAGTGTGGTGCCTTTGTGTTGTAGAAGGTTTAGACTGTTGGTAAGGCGTG
GGCATGCTGTATTCTCAGGCTGTACTTCCGGGGTGATATCACAATGCTACATTTTAAGCAGCAT
CAAACCTCGGCTTCATCTGCTATAAAAGTATAAACTGAATAAAATAGTAGTTTTTACAACTGTC
TTGCTTTGAGGCCATTTCTCTCAGAAATGGAATCAGGCTTCCCAGGCAGCTAGCTGATTAGGCA
TGCACCGACAGGCAGGGGGTGGCTGCCATGTCTGTTAGCATTGTGCGAGAGTGTGGGATGCCAT
TCTCACCTGTGGATGGTAGATGCTGTGTGGTAGACTCACTCCAGCTTCTAGGCGTACCCCACTC
AGGCGTATCTGTGGAGGGCACAGGCAGGGAAAGTCTATACAGCAACTGAAGAAATACTGTGTTT
TCTAAGCAGATGCCAACAGGGCCCTGAAGTGAGATACAATAGTAGACTATAGTTTTAGGAGAAT
TAATTTTCACCTGAATTTAACAAAGTCAAACCGTCAAACCACAATTTCAAGGAAACTTCAGATT
CAAACCCGAGAAACAGGATAAATAATTCACGATGGATTTGAATGGCCTGGCCTGAACTTGGGCC
TGTGGACCCAGGGCTTCTGTGTTTACCATCTCTTTAGCAGTGTCTTTGTGGCCTTGGGCAGGTT
CTTCACAAAAACAAAAACCACACAATCAAATCCAGGAGACAAAGGAAGGTGCTCAGGTCTGAGA
AGAGCCTCTGAGTGGCTGTTTCCCTCTCTCCTGAGCTGTCCTTTGTAGATCCCAGTTCTCGGTC
CTTTGTCCTCTGCCTCTGCTGTCTTTCTATCAAGTTTCCTTCTGACACACATGTCCTGTGGAAG
CAGGTGTCAGGAAGTGGTAGGTGCCTAGGCCTAGGATTTGAAGAATCACACAAAAGCTGTTTCT
GTGATGGGAGTATTGTTCACTGAGTACTCACCCCACAACAGAGGTACCATTGTGGAACAGCCAT
TGACATCTGGTGTTGGGAGTAGAGAAATTGTCAGTGGTTGGTTAGGTGGGATAGTCACTCCCTG
GGTAACTTACTGGGAAATAACCTACATTGTCTTGTTTTAGGGTATGAGGCATTGGGGATTTGGA
CAAATGACTTGTAAACAAAGAAAAAATGTAAGAAAGACTACTTTTAGAATATTTTTAGGTTAAT
AACAAAATTGAGAGGCAAGTAGAGATAGTGCCCTCTTGGCGTCGCCATCCATACACACCGTAGC
TTCCACTGGTATCAGCCTGACAGAAACCACATTCGTCCCTGGCCCAAGAACAGAAGTTAACTGA
AAGGCAGTAGCGTCACAGTGTATGCAGCTCCTGTGTGGACTGGATTCCTGAGGTGATCAGTTGC
AAAGATGGCGGTGGACTTTGGCCCGTGCATTCAGAGCTCTCCACCCGTGTGCTCTTGGCTGTGC
TCCTTGGCCTGTGGAGATATAAATGACCTGTGCTGCCCCCCATGCAGACAGAAATGAGGACTAG
AATCTTCAAGTTATGCTCTGTTTACAGAGCTGGCAACTTGAGAAGACAGGTTAGCCACCTCCAG
AGCTGTCTGGATCTCATCTTCGGCCAGGTGGTTATAGGGCTTGTGCCTCTGATCGGGGCACTTC
GTAGTCTATATCTTAAGAATACATTTGTGCTTTACAGTGTAGGAAGGGTGCACACACACACATG
CACACACACACACATGCACACACACGCACATACACACCAGATCTGTTCTAAGTTGATTGCTCTA
AATGTCATCCCAAGGACTAATTCAGGGGATGCAAGGCCTGGTAACCTTGGTATTTATCCCCACT
GTACCCAGGCTACAGGGAGAGCCGAGAAGGAGAAAAACCAGCACTGTGGATCTCCAAGGTAAGA
TGGACAGCCAATCAGGACAGACTGACTGCCTTTGTCTCTCCTCTTTAGCTAAGGAGCCAGGGGC
CAGCATCTCTTCAAAGGAACATGCTCAGTGCCCTTGCATTCTTCCTGGGTCCCTGACTAAAAGT
TCCACTATTTCCTGACAGCACTTTGAGCTGCTTCTAACACATGGGCCTTTGGGAAGTGTTCAAA
GACCAAACTATCACATACACTTTATAACAAGTTACCTACGGAGTCTCAGTCTGCACAGCCTCCT
AGCTGTAGTCAGTTGTAGGCGGCCAACTGCTCAGACCGTGTTCTGTCATGTATGCCACCTGATG
GCATTCTCGGGACCTGTTCCTGCTCTGAGGGCTTCTTGAAATATGGATCTGTGCTAATGTGGTG
AGTTTTTAATAAAAACAAAACCAAAAAATGGTTTCTTGTATTTTAAAAAAAGTATGTGTGTGTG
TGGGTCTGTGTGGATGTGTGTGTAAGCGCAGGGCCTGCAGAGCCTAAGAAGGTGTGGGACCCCT
GGAGCTGGAGTTACAGGTGGGTGTGAGCGGTACTGTGGTTGCTGGGAACGAAGTCCTGGCTTCC
AAAGAGAAGCAGTGCTAGGCCATCTGTAGCCTCTAAAGAATGAACTTTAACCTCTCTTCACTTG
TTAAGATTCACTTTGGCTCTTGTCTGCAGGGTTCATCTTTGTTCAAATGGGATGCCTTGAGGCC
TCCACTGTGCTGTCTATCCTTCAGGCTGTCTGTCCTCATTGCCTTCAGAGTCAGTGCCTCCACC
CCACTCTCTGCCCTCAGGGTCACCACTGGACTCCCTGTGTGCAGCCCTTTGGGTGGACTGTCCT
TTACTTTGTGACACACGTGGGACTTTCCTCATCTCACGGCCTTTGTTTGTTTATCCTCGTGGCC
TCTGAATGGTGTCTTAGTGTTTCTGGTGCCCACTTTCTTGGGCACTTTCTGTGTGAGCATTTTT
ATTCCTTTGGAGCCTCATTGCTGAGTTGCCTATGGAGAAGGAAGACAGTTTTGTGAGAGACTGA
CCAGTGTCTTCCAAAGGAGCTGTGGCCCTTTACGTCTCCCCCAGCTGTACAGAAAGTCACGTGC
TGTGTCTTTACCACCCAGCTCCACCCCAGAGAGAATTTTAGTTGACACACAGTGATGGCACAGA
GGCATGGAATGCAGCGTCGTATTTCAGTGCATGTGTGCTGTGTGTGTGCAGCCAGCAGGGCAAT
CGGTCTACTCCCACTTGAAATGTTTATTAGTTCGTGGTGCTTTAAAACTGTGCTAATGTAGTTG
TTCTGAACTGTACAACTATTAGATGTGAGCCCTACCCACCCCCATGTCCAGCCTCCTAGCCCTG
CTCTGCAGGTGAAACTTACAAGGTCATTTATTTGCCTTTAGCTCCTGCTGGGAGAATGCATAGT
GTTTGTCTTTCTGTGTCTGGCTGGCTTCATGGTGGCTAAGATGCTTACCTACAGCTTCCAGGCA
AGCCCGTAGTGCATTTTCTGGCCTCCCTGGACTCTGCACATGCATATGTACATATAGGCAAAAA
ACTGGTGCACACAAAATAAATAAATAAATAAAATCTAGAAAAAGATTGGCATTAACACAAACCG
AGTTGCAGTTGACATTTTTGAGACTTGATTTAGAAGATGGTTTTAGCATCATTCTATTGATTGA
TTGATTGATTGCTCTTGGTAAATTTGTTCTAAAAATTATCTTAAAAATTATAAAAAATTCCATT
TTTTCTAACTATGGTTAAAAGATGAATTTCTGTTAAGATGAATACATTTTTGAGATTCAACATT
GTAGGTGGACTAATACCACAGTGATGGGTGGGTCTTATGTATAGAAGCTGAGTGTGTTATCACC
TCAAGGAGGTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTCTC
CCCCTCCCTCCCTCTCTCCTTTCTTTTGACTCTAGATTGGCCTTGAATTTGCAATCTACCTGCC
CTAGTTTCCTAAGTGTTTGCAAATACATTTTCCAAGCACAAAGACACATTTCTCCCAATATGGC
AACATTATGATTGTTAGCCTTTCTTGGAGGATACATTACTCTGGAAACATTGGCTTTACTTTTA
GCCATTTGTTACCATTCAAATTATTACGGTCTAAAGAAATCCTGGTGGTGGCAGAGCATGTTAA
GTTCTCAGTGGTATGAAGTGTTGGTGGGCGTGTGTGTGACACAGGATGTTACGGCCGGTGCCCT
GGCCTGGACAGGAGCTTGCATCTTCGCAGTCAACCCTTTAATTAATATTGCGTGGATTTTGTTA
AACTTGTCTCAGAGTGTATTTTCCTTGGGAAATGTTTGGACTTTAAGTGCCCAGGAGAGAAGCC
CTTTGCAGCATGCACTGTGTGTGACTGTGTAAGTTGTGTGACTCTCACTATTCATAGACTGAAC
AGACAACTTAAACCTTAAACTTGAGCCTACTCAGAGGAAGGCTCTTCTAGTAGGGTCAGCCTTC
TGTTAAAAGGAAAGCCCACCACACAGGCCTGGGGGACATCCCTTGGCTGTGCTGCTGCTTCTGC
CCGTGGTTCAGCTGTTGGAAAGGCAGTGACCTTGGGTGCTTTTCTGTGTATGACTGCTTACTCC
AGGGTTCAGTGTGTTCTGGTAGCTCGCCCGTCGCCTGCCTCTGGCTTCACTCTCCCCCTTATGC
TGACTGAGGCAGTATTTCTTCAGTCTCTCATCTCTGGGCTTTGATGCATATGTTCTGAAGGTGG
CCACCGTGACTTTGGGTAGCAGCAGATGGTAAACCTTCATGCCGCCACCAGCTATACTGATGCT
AAGTTGGGGAGTTCACATTTGATGAAGAATCAGAAGTGCATATGAAAGCTTTCACTGCCTAAAC
ACCTTCTAATTAAAAGATTAGCATACGAAAACCTTTGCAGCTGCCTGGGCATTTGAAGGAAATG
AAAATTCGTTGTTTTCTTAGAAATGCAGATATTTATCTGTCAGTGCAGTTCCCCATTGCCATTG
CCTCCTAACAGCTCTTCCTCACTTGTCCCAGTGTGATTTTGGCAGTAGTCGGGCAGTAGCTAGG
TGATTAGGACTGAAGGAGGGACCTTTGGAAGCCACAGATGCTTGCACACCTTAAATTTAGGTAC
TCTGAACTTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGCGTG
TGTGTGTCAGAGAGAGAGAGAGAGAGAGAGAGAATATGCTATCATCACATGGTTCTGGTAGATT
TGATCTGCTGTTTTCTATCTTGGAAACTATTAGATATTTCTGGGTTAAATTGGTGCTTAAAGAA
CTCAGCCTGTCCCAAGATTACCCTTCTTTGTGTGATGGAGCAGGTACATGTTACTCCAGTTCAC
AGGCAGGACTCTGTGACACGTTAAACTGAAAGTTCTAACACAGAGAAAATTTGGTTCCATCCAA
GGAAATTTAAAAATATTGTGCATAAATCCTAGAAGCCTGTTGCATTTGCTACCAAAGCAGCTTT
TTAAGAGTAGGAGGCGAGACTGTTTTGAGGCAAGCTGAGTATCCAGGGGCAGGACTTTTAAAAC
TTTCCTTCTGAGCAGAGAACGTCTGGGAGACCAAAGGTAGACTGACGGCTTGTGAGAGTAGGTA
TGGGGCTGCTCAAACATTGGAACACGTTTGTGTTTTGTGGGTATGCAAACTGGCATCAACAGAG
CCCATGAACAGGGCATGGACCTGGATGCATCTGGGATCACAGACTTTGGACTGCAGCGTAAACC
ACAGATCTTAGAGAACTGTTCCTGATCTGTGCTGTTGCCGGAATCTGTGTGGAAGCCTACGGAA
TCCGTGTGGAGGTCTACGCATGCTCCCTAGGGCTGGAGGGAATTCTTGGAGAGCGCTGAAGGAT
GTTGGGTGTTGCCTTCCACTGTAGATGATGGCCAGCAGGGATCTTCGAGGGGAGGGACTCAGCT
CGTGTTTGACCACACCCTGTGAATATATGCTCAATGCCAAGTAGAGTTGTCCTTGTGTGGGTGA
CAAGGTGTAGGTGACAAGGTGTAGGGAAGGACTGGGAAACGAGTATGGTAGGGGGTCTATGCTG
GGAAATCCCCAAAGAATCAATAAAAGTGTTGTGTTGGGAAAAAAAAAGAAAGTGAAGTGCGGTG
GGCTTAGATGAGATCTGGGGAGCCTGTGCTCACCCACACATCACTGGGGCAGTGGAGGGCCGTT
TGCTGCACACAGCCGTGCCTGCAGAGTGGTGATGTTTTAATGCTCCCAACAGAAATGACTTAAG
CATTGTAACTGTAGTCAAGTCCAGTGCGGCCTGTTCTGAGGAGAGAGTGAAGCATCTTTTTCTT
GCCCCGACTGTAGGTAAATGGTTTGTGAGTTTTCTCCCGATTGTGTGTTGCTCTTTCCTTCTCT
TTCAGTGTGTGTTTATAGTTCTGGTGGGGCAGAAGCATGGATGAGTTTGGTTAGTGACCTAAGT
TGCTCTCACCCCCTCAACCATGCTCTGTATCACTGTGGGCAAAGATGGTGCAGCCCTTCCTGTC
AGGCCCTACGCTGATGTAGTGTGCTGTGTATGTGTGACAAATGAAAGAGAGAAATGTGTTAATC
GTGTTCCTTCAGGAAGATGTGCTGTCCACAGCAATTATTTCATGACAGTGTTAGCAACAGCACT
TGTTTTATCATGAAATAAAGGATGGTTTTAGGAGCCTTTTATTGGGAAGACAATTGTATCAAAT
TAGTACAAATTAGAGTTTTGTCTTTATAAAGGTGAGCAGACCCATGAGCAGTTTTTAAATTGTG
TTTGAGTCTACATATGAACAAATTCAGTCTGAGGGTTAAAGACGCTGTTATTTTGTCCTTTCTG
CTGACAGCTTCATTACAGATCGGCCTACTGTTGGCATTAAAAACATGTCTGGCTCCTTATGATC
TGTGTGCACGCGGCTATGATATTGATGCTATACCACTGTTCATTAAGGACTCACTTCAATGAGG
CTGCAGTGGATAAATGTGAAGAGATACAGATGTTAAATGCAGTCGTTCTTCTTTGTGTACAGCC
GCATGGCTAATAATTTCCTAGTGGCTAAAGCTCTTGTTAGCAGGAGTGCTGGCGTGTTAAGAAC
GGCACTATAAATAACTTTAAGAATGAAAGTTGAAGGTGCTTCTTTTAAAGACTATTGTTAACTA
AACATTATTGCCAAGCAGATGGGGAGCAGTCGCCAGCCTGATGTTCCTAGGTCTAATTACATTA
CCACCAGCCCTGTACGGCTCAGTTGAAGAGGTGTACCCAGAGTCCAATTTATAATCATTTAGGC
AACACCTGTTTGGGTGGAATTGACAGTCAAAGGGCACATTTAAAAAAAATCACATATGTTCTTG
TGTTTATTACCTCAATGTGAACGTTGTCGAGCGGCAAGCAAACTTGGTGAGAGGAGAAAGCCTG
GATCCACCCGCGCTTCCTGCCAGGTTTTACTTGTAATGGACACAAGGACAGAACAGACATTCAT
TTTAAAAGGTCTCAGGAAAAGCAGCGAGTGCAGCAGGAACAGGAAGACCATCATCCCCCGCTGT
GTGCCTAACATGGTGTGTCTGCACACATACATCATCTCGGAGGAGTCGGTGTTTCTCGTGCTGC
AGCACGCCGAAGGTGGCAAACTCTGGTCATATATCAGTAAATTTCTGAACAGAAGCTCTCGAGA
AAGCTTGGACATTAAGGAGGCGAGACCGCCCATGCCTCCTCGAGTGCGCCTGCAGCAGCCAAGT
GCTAGTCCTCAGGGCAGCTACAGTGTTGAGTCCAGAGGGAGCGACACAGGGAGCATGCTGAAGG
TTCTGCCCCTGAAGACTAGCCTCACCCCGAGTTCTCAGGACGATAGTAACCAGGAAGATGATGG
GCAGGACAGCTCTCCCAAGTGGCCCGATTCGGGCTCCAGCTCAGAGGAAGAGTGCACAGCTGGC
TACTTAACGCTGTGCAACGAATATGGGCAAGAAAAGCTTGACCTTACATCTTTGAATGAGGAGT
CTGTCATGCAGCCTGAAGGGGAGAATGCTGATAGCCAAGCTGTTAGGAGCTTCCCAGCATCCCT
CACCGCTGACAGTGCAAGCCCCAGCACCCAGCTCAAGTTCTTCCCTGGAGACGAGGGCCTAGAA
GCAGTTTGTTCTCCTCGAACATCTGATTCCCTCAGGAGGTCGAAAAACAGTCCTATGGAGTTCT
TCCGAATAGACAGTAAAGACAGCACAAGTGAGCTCTTGGGACTGGATTCTGGTGAGAAATTACA
CAGTCTGAAACCAGAGCCTTTGAAAGCACTCTTTACCCTTGAAGATGGAGACAGTCCTTCCCAG
AGTTTTGATGCCGGCAAGAGCCAGGGAGAGAGTGAAGCTCAGGACTCCATCAGCAGGGGCTCAG
ATGACTCCGTCCCGGTTATCTCATTTAAAGAGGCTGCCTCTGAGGATGTCTGTAGTGCTGAGGA
AGGGAGGCCTGACCTTCTTGTGAATCTACCTGGTGAACTGCAGCCAACCAAAGAGACTTCAGCA
GTGGACCCTACTAAGTTTTCACAGGCCAGCATAGGCAGGCTGGAAGCCCCGGATGTGTTGTGCC
TCAGGCTGAGTTCTGAACAGTGCCATGACCTGGGACAAGAAGGCCCAGAGGAACTGAGCCATCC
CACTGAATTCCGTCCTGGTGGTGTGACCCCAGAGCGCAGTGCTCAGGCAGATCTTGGGGTGTTG
TTCACGGCTACAGTTGATCACAGCAGCTCACAAGACCAGTTTCTGTTTTCCAGCTTGCATTCAG
AGTCTGACAGGCTGGGGCAGGTGGAGGGAGCGGTCACTTCACAGGACTTGCAAGAAAGCCTATT
CCACATTGCTAGTCCATGCTCAGGTGCTAAAGAAGACAGCGCACACACAGACACTGCCACGTCT
GAGGAAGTGCTGCTGTTCACAGAGCCGAGCAAAGAAGGAGACTCGGAGGCCAAGGTGCGGAGTG
TGGGAGCCGGGGGAGCGGAGAAGGAAGTCCATCAGATCTTCGAGGACCTGGACCAGCGACTAGC
AGTAAGCGCCAGGCTCTTCATCCCAGAGGGCTGCATTCAAAGATGGGCAGCAGAGATGGTGGTA
GCCCTGGACGCCTTGCATAGAGAGGGGATTGTGTGCCGAGATCTGAACCCAAACAACATCTTAT
TGAATGATGGAGGACACATTCAGCTAACGTATTTTAGCAGGTGGAGTGAGGTTGAAGATCTCTG
TGACAGCGACGCCATAGCGAGAATGTACTGCGCCCCAGAGGTTGGAGCAGTCACAGAAGAAACT
GAAGCCTGTGATTGGTGGAGCCTGGGTGCTGTCCTCTTCGAACTTCTCACTGGCAAGACATTGG
TGGAATGCCACCCAGCGGGAATAAATACTCACACTACTTTGAACATGCCAGATTGTGTTTCTGA
AGAGGCCCGCTCACTCATCCAACAGCTCCTGCAGTTCAACCCTATGGAGCGTCTGGGTGCAGGA
GTGGCCGGTGTTGAAGATATCAAATCTCACCCGTTCTTCACCCCTGTGGATTGGGCAGAACTGA
CAAGATGAACATCACATGGAGTGTCCTTACAGGACAGATCCCCTTGTGACAGGAGTGGCTGGGC
TTCAGGCACCCTGCAGCTAATGTGACAGAGCCTTGGGACAAGGACCCTAAGGAAGTGATGGGGC
AGGAGGCTAACAGATTTGCTTACACTTCTGTCTGGAAAGGAACTGCTCGCCACGCCAGCAGCTG
CTATGTGCACATCTCGCGATGAGATGTAACTTATTCAAGGTTGCGGGCATGTTGCAGACAAGAC
TGAAACATGAGTGCCTGTGTAACGCCTCTGCCAGGGGGCTGGAACTGCAGAAGGAAGGTTGACG
TGAGTCAAGGACCTTGTAGCAACCGATGGTGTTTCTGCTAAGCAAGACTGGTTTACACAATAGC
ATCAATATTTGCTGAGTAACACTAAATGTGCTCTGTGGACAGTGTCACTAGTGGGCTGGCAAAG
CAAAGTGGCGTGCCCAGTGCTGAGCAGGCCGGTTATCTCTGAGGAAAACCTCTCACCAGCTTAG
AGCTTGCTGGTCAATGCTGCTAACTGAGGGGCTCCTCTCTCCCCTGCCCTATTTCCTGCATTCT
CTGCTTCTTCTCTTGGATTCCGCCTTTCCTACTTCTGTTAACACACATGCAACGAGAAAGGGAA
GGGGCATTTATTCCCCAAACTGCCATCTTAACAGGACTAAGAAATCATGGTGTCAAATAAATGT
GACTAAACCTTG

hide sequence

RefSeq Acc Id:

XM_039090578 ⟹ XP_038946506

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	104,877,296 - 105,021,489 (-)	NCBI
mRatBN7.2	13	102,346,160 - 102,491,000 (-)	NCBI

RefSeq Acc Id:

XM_063272177 ⟹ XP_063128247

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	104,877,296 - 105,014,563 (-)	NCBI

RefSeq Acc Id:

XM_063272178 ⟹ XP_063128248

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	104,877,296 - 105,009,668 (-)	NCBI

RefSeq Acc Id:

XM_063272179 ⟹ XP_063128249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	104,877,296 - 105,014,563 (-)	NCBI

RefSeq Acc Id:

XM_063272180 ⟹ XP_063128250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	104,877,296 - 104,992,975 (-)	NCBI

RefSeq Acc Id:

XR_001840773

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	104,885,765 - 105,021,490 (-)	NCBI
mRatBN7.2	13	102,354,631 - 102,491,000 (-)	NCBI
Rnor_6.0	13	109,348,286 - 109,483,924 (-)	NCBI

Sequence:

show sequence

GTGGTGATCCGGAAGCAGATCCAAGCGGCAGTCCCCAGGAGCCACCGCCCCCTCGTCGCGGCTC
TCGTGCTCTGTGCTGCGTGGAGTCTGCCGCGGCTGGGGCTGCCCGATGATCCCCAGCTGGCGGA
AGCACGGGCGGAGGGAGGATGACCTCTCCTTGGGGTCACAGTGCGGACCTGGCCCGCTTCTACA
CTGTCACCGAGCCCCAGCGACACCCTAGGGGCTACACGATCTATAAGGTTACCGCACGGGTCGT
TTCACGAAGAAATCCGGAGGACGTCCAGGAGATAATTGTGTGGAGAAGATACAGTGACTTTAAG
AAGCTGCACAGAGAGCTATGGCAGATTCACAGGAACGCATTTCGACACTCTGAGCTGTTTCCCC
CGTTTGCTAAAGGGACAGTGTTTGGGCGATTTGACAAAACCGTAATTGAGGAACGACGTCAGTG
TGCTGAGGACCTGCTACAGTTCTCTGCCAACATCCCTGCTCTGTACAACAGCAAGCAGCTCCAG
GACTTCTTTAAGGGTGGGATAATTAGTGATGGCTCTGAGTTAATTGGCCCTGCTGAAGCTTACC
CAGACTCCCTGGCCAACACCTTTTCTGAGTGTGGTACTGAAGGCTTCTCCAGTGACAGTGACCT
CCTGTCCCTCACTGTTGATGCGGACTCTCTTGCCGAGGTAGATGATGGAATGGCTTCCCGTCAG
GGTTCTCCCAGTAGAGCTTTTGGTCTGAGTGTGTCTGCGGATTCTTCGGCAGTAGGGGCTGTTG
CTTCTGACATTGAACCAAGCAAAGCAGAAGACCGGGAAAGCCGCAGCCTCTTCCCCAGCAGCTT
AAAGCCAAGGCTTGGCAGGAGAGATTACCTGGAGAAGGCAGGGGAACTTATCAAACTGGCCTTA
AAGAAGGAGGAGGAAGATGACTATGAAGCAGCTTCTGACTTTTACAGGAAGGGTGTTGATCTGC
TCCTAGAAGGTGTACAAGGAGAGTCGAGCCCCACGCGCCGGGAGGCTGTGAAGAGAAGGACAGC
AGAGTACCTCATGCGTGCAGAGAGCATCTGTAGCCTCCGGGTCACAGCCCAGCTTGACACAGGC
CCACAGCCTCCAGGAGCACTAAGTTCAAGGCCCCCTTGGAACCTAAGGAGCCCTGCCGAGGAGC
TGAAGGCCTTCAGAGTCCTTGGGGTGATTGACAAGGTTTTACTTGTAATGGACACAAGGACAGA
ACAGACATTCATTTTAAAAGGTCTCAGGAAAAGCAGCGAGTGCAGCAGGAACAGGAAGACCATC
ATCCCCCGCTGTGTGCCTAACATGGTGTGTCTGCACACATACATCATCTCGGAGGAGTCGGTGT
TTCTCGTGCTGCAGCACGCCGAAGGTGGCAAACTCTGGTCATATATCAGTAAATTTCTGAACAG
AAGCTCTCGAGAAAGCTTGGACATTAAGGAGGCGAGACCGCCCATGCCTCCTCGAGTGCGCCTG
CAGCAGCCAAGTGCTAGTCCTCAGGGCAGCTACAGTGTTGAGTCCAGAGGGAGCGACACAGGGA
GCATGCTGAAGGTTCTGCCCCTGAAGACTAGCCTCACCCCGAGTTCTCAGGACGATAGTAACCA
GGAAGATGATGGGCAGGACAGCTCTCCCAAGTGGCCCGATTCGGGCTCCAGCTCAGAGGAAGAG
TGCACAGCTGGCTACTTAACGCTGTGCAACGAATATGGGCAAGAAAAGCTTGACCTTACATCTT
TGAATGAGGAGTCTGTCATGCAGCCTGAAGGGGAGAATGCTGATAGCCAAGCTGTTAGGAGCTT
CCCAGCATCCCTCACCGCTGACAGTGCAAGCCCCAGCACCCAGCTCAAGTTCTTCCCTGGAGAC
GAGGGCCTAGAAGCAGTTTGTTCTCCTCGAACATCTGATTCCCTCAGGAGGTCGAAAAACAGTC
CTATGGAGTTCTTCCGAATAGACAGTAAAGACAGCACAAGTGAGCTCTTGGGACTGGATTCTGG
TGAGAAATTACACAGTCTGAAACCAGAGCCTTTGAAAGCACTCTTTACCCTTGAAGATGGAGAC
AGTCCTTCCCAGAGTTTTGATGCCGGCAAGAGCCAGGGAGAGAGTGAAGCTCAGGACTCCATCA
GCAGGGGCTCAGATGACTCCGTCCCGGTTATCTCATTTAAAGAGGCTGCCTCTGAGGATGTCTG
TAGTGCTGAGGAAGGGAGGCCTGACCTTCTTGTGAATCTACCTGGTGAACTGCAGCCAACCAAA
GAGACTTCAGCAGTGGACCCTACTAAGTTTTCACAGGCCAGCATAGGCAGGCTGGAAGCCCCGG
ATGTGTTGTGCCTCAGGCTGAGTTCTGAACAGTGCCATGACCTGGGACAAGAAGGCCCAGAGGA
ACTGAGCCATCCCACTGAATTCCGTCCTGGTGGTGTGACCCCAGAGCGCAGTGCTCAGGCAGAT
CTTGGGGTGTTGTTCACGGCTACAGTTGATCACAGCAGCTCACAAGACCAGTTTCTGTTTTCCA
GCTTGCATTCAGAGTCTGACAGGCTGGGGCAGGTGGAGGGAGCGGTCACTTCACAGGACTTGCA
AGAAAGCCTATTCCACATTGCTAGTCCATGCTCAGGTGCTAAAGAAGACAGCGCACACACAGAC
ACTGCCACGTCTGAGGAAGTGCTGCTGTTCACAGAGCCGAGCAAAGAAGGAGACTCGGAGGCCA
AGGTGCGGAGTGTGGGAGCCGGGGGAGCGGAGAAGGAAGTCCATCAGATCTTCGAGGACCTGGA
CCAGCGACTAGCAGTAAGCGCCAGGCTCTTCATCCCAGAGGGCTGCATTCAAAGATGGGCAGCA
GAGATGGTGGTAGCCCTGGACGCCTTGCATAGAGAGGGGATTGTGTGCCGAGATCTGAACCCAA
ACAACATCTTATTGAATGATGGAGGACACATTCAGCTAACGTATTTTAGCAGGTGGAGTGAGGT
TGAAGATCTCTGTGACAGCGACGCCATAGCGAGAATGTACTGCGCCCCAGGGGTATTGAAAAAG
CAGCCAACATCATGCATTCTGATGATTTAGAGAAGAGATACTTTGTTTAAAGCCTGGGAAACAG
TTCAGCAAGTACATAGTTTCTTTGTGCTCCAGCTGCCCGGCTGCCAGAAAGTTAACTCTCTGCG
GCAGATTACACTCACCTAGGAGAGCCAGGCACAGCAGCTGTGACGTCAGTGACACAGTAATGAG
GCTGTGGGTGCCATCTACATCCTTCAGAGGTTGGAGCAGTCACAGAAGAAACTGAAGCCTGTGA
TTGGTGGAGCCTGGGTGCTGTCCTCTTCGAAC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001402718	(Get FASTA)	NCBI Sequence Viewer
	NP_001402719	(Get FASTA)	NCBI Sequence Viewer
	XP_008768052	(Get FASTA)	NCBI Sequence Viewer
	XP_008768054	(Get FASTA)	NCBI Sequence Viewer
	XP_038946506	(Get FASTA)	NCBI Sequence Viewer
	XP_063128247	(Get FASTA)	NCBI Sequence Viewer
	XP_063128248	(Get FASTA)	NCBI Sequence Viewer
	XP_063128249	(Get FASTA)	NCBI Sequence Viewer
	XP_063128250	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94981	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062125.1
	ENSRNOP00000075665
	ENSRNOP00000075665.1
	ENSRNOP00000085010
	ENSRNOP00000085010.2
	ENSRNOP00000088465.2
	ENSRNOP00000103289.1
	ENSRNOP00000104391.1

RefSeq Acc Id:	XP_008768052 ⟸ XM_008769830
- Peptide Label:	isoform X2
- UniProtKB:	A6JGX5 (UniProtKB/TrEMBL), D3Z991 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSPWGHSADLARFYTVTEPQRHPRGYTIYKVTARVVSRRNPEDVQEIIVWRRYSDFKKLHREL WQIHRNAFRHSELFPPFAKGTVFGRFDKTVIEERRQCAEDLLQFSANIPALYNSKQLQDFFKGG IISDGSELIGPAEAYPDSLANTFSECGTEGESSPTRREAVKRRTAEYLMRAESICSLRVTAQLD TGPQPPGALSSRPPWNLRSPAEELKAFRVLGVIDKVLLVMDTRTEQTFILKGLRKSSECSRNRK TIIPRCVPNMVCLHTYIISEESVFLVLQHAEGGKLWSYISKFLNRSSRESLDIKEARPPMPPRV RLQQPSASPQGSYSVESRGSDTGSMLKVLPLKTSLTPSSQDDSNQEDDGQDSSPKWPDSGSSSE EECTAGYLTLCNEYGQEKLDLTSLNEESVMQPEGENADSQAVRSFPASLTADSASPSTQLKFFP GDEGLEAVCSPRTSDSLRRSKNSPMEFFRIDSKDSTSELLGLDSGEKLHSLKPEPLKALFTLED GDSPSQSFDAGKSQGESEAQDSISRGSDDSVPVISFKEAASEDVCSAEEGRPDLLVNLPGELQP TKETSAVDPTKFSQASIGRLEAPDVLCLRLSSEQCHDLGQEGPEELSHPTEFRPGGVTPERSAQ ADLGVLFTATVDHSSSQDQFLFSSLHSESDRLGQVEGAVTSQDLQESLFHIASPCSGAKEDSAH TDTATSEEVLLFTEPSKEGDSEAKVRSVGAGGAEKEVHQIFEDLDQRLAVSARLFIPEGCIQRW AAEMVVALDALHREGIVCRDLNPNNILLNDGGHIQLTYFSRWSEVEDLCDSDAIARMYCAPEVG AVTEETEACDWWSLGAVLFELLTGKTLVECHPAGINTHTTLNMPDCVSEEARSLIQQLLQFNPM ERLGAGVAGVEDIKSHPFFTPVDWAELTR hide sequence

RefSeq Acc Id:

XP_008768054 ⟸ XM_008769832

- Peptide Label:

isoform X4

- Sequence:

show sequence

MFLCLLPQCERCRAASKLGERRKPGSTRASCQVLLVMDTRTEQTFILKGLRKSSECSRNRKTII
PRCVPNMVCLHTYIISEESVFLVLQHAEGGKLWSYISKFLNRSSRESLDIKEARPPMPPRVRLQ
QPSASPQGSYSVESRGSDTGSMLKVLPLKTSLTPSSQDDSNQEDDGQDSSPKWPDSGSSSEEEC
TAGYLTLCNEYGQEKLDLTSLNEESVMQPEGENADSQAVRSFPASLTADSASPSTQLKFFPGDE
GLEAVCSPRTSDSLRRSKNSPMEFFRIDSKDSTSELLGLDSGEKLHSLKPEPLKALFTLEDGDS
PSQSFDAGKSQGESEAQDSISRGSDDSVPVISFKEAASEDVCSAEEGRPDLLVNLPGELQPTKE
TSAVDPTKFSQASIGRLEAPDVLCLRLSSEQCHDLGQEGPEELSHPTEFRPGGVTPERSAQADL
GVLFTATVDHSSSQDQFLFSSLHSESDRLGQVEGAVTSQDLQESLFHIASPCSGAKEDSAHTDT
ATSEEVLLFTEPSKEGDSEAKVRSVGAGGAEKEVHQIFEDLDQRLAVSARLFIPEGCIQRWAAE
MVVALDALHREGIVCRDLNPNNILLNDGGHIQLTYFSRWSEVEDLCDSDAIARMYCAPEVGAVT
EETEACDWWSLGAVLFELLTGKTLVECHPAGINTHTTLNMPDCVSEEARSLIQQLLQFNPMERL
GAGVAGVEDIKSHPFFTPVDWAELTR

hide sequence

Ensembl Acc Id:

ENSRNOP00000062125 ⟸ ENSRNOT00000067017

Ensembl Acc Id:

ENSRNOP00000075665 ⟸ ENSRNOT00000087305

RefSeq Acc Id:	XP_038946506 ⟸ XM_039090578
- Peptide Label:	isoform X1
- UniProtKB:	A6JGX5 (UniProtKB/TrEMBL), D3Z991 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000088465 ⟸ ENSRNOT00000105727

Ensembl Acc Id:

ENSRNOP00000085010 ⟸ ENSRNOT00000110098

RefSeq Acc Id:	NP_001402719 ⟸ NM_001415790
- Peptide Label:	isoform 2
- UniProtKB:	A0A0G2KB60 (UniProtKB/TrEMBL), A6JGX5 (UniProtKB/TrEMBL), D3Z991 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001402718 ⟸ NM_001415789
- Peptide Label:	isoform 1
- UniProtKB:	A0A8I5ZZ58 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128247 ⟸ XM_063272177
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZZ58 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128249 ⟸ XM_063272179
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZZ58 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128248 ⟸ XM_063272178
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZZ58 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128250 ⟸ XM_063272180
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZZ58 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000104391 ⟸ ENSRNOT00000140777

Ensembl Acc Id:

ENSRNOP00000103289 ⟸ ENSRNOT00000161908

Protein Domains

Protein kinase PX

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2KB60-F1-model_v2	AlphaFold	A0A0G2KB60	1-1045	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699116

Promoter ID:

EPDNEW_R9633

Type:

initiation region

Name:

Rps6kc1_1

Description:

ribosomal protein S6 kinase C1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	109,483,895 - 109,483,955	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306578	AgrOrtholog
BioCyc Gene	G2FUF-16875	BioCyc
Ensembl Genes	ENSRNOG00000003767	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067017.4	UniProtKB/TrEMBL
	ENSRNOT00000087305	ENTREZGENE
	ENSRNOT00000087305.3	UniProtKB/TrEMBL
	ENSRNOT00000105727.2	UniProtKB/TrEMBL
	ENSRNOT00000110098	ENTREZGENE
	ENSRNOT00000110098.2	UniProtKB/TrEMBL
	ENSRNOT00000140777.1	UniProtKB/TrEMBL
	ENSRNOT00000161908.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1520.10	UniProtKB/TrEMBL
	Phosphotransferase system, lactose/cellobiose-type IIA subunit	UniProtKB/TrEMBL
	Transferase(Phosphotransferase) domain 1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5599778	IMAGE-MGC_LOAD
InterPro	Intracell_Sig-Traffick_Protein	UniProtKB/TrEMBL
	IPR001683	UniProtKB/TrEMBL
	Kinase-like_dom	UniProtKB/TrEMBL
	MIT	UniProtKB/TrEMBL
	MIT_dom_sf	UniProtKB/TrEMBL
	Prot_kinase_cat_dom	UniProtKB/TrEMBL
	PX_dom_sf	UniProtKB/TrEMBL
	PX_S6K-delta-1	UniProtKB/TrEMBL
	STK_RPK118-like	UniProtKB/TrEMBL
MGC_CLONE	MGC:72619	IMAGE-MGC_LOAD
NCBI Gene	289342	ENTREZGENE
PANTHER	RIBOSOMAL PROTEIN S6 KINASE	UniProtKB/TrEMBL
	RIBOSOMAL PROTEIN S6 KINASE DELTA-1	UniProtKB/TrEMBL
Pfam	MIT	UniProtKB/TrEMBL
	PF00787	UniProtKB/TrEMBL
	Pkinase	UniProtKB/TrEMBL
PhenoGen	Rps6kc1	PhenoGen
PROSITE	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	PS50195	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000003767	RatGTEx
SMART	MIT	UniProtKB/TrEMBL
	S_TKc	UniProtKB/TrEMBL
	SM00312	UniProtKB/TrEMBL
Superfamily-SCOP	64268	UniProtKB/TrEMBL
	Kinase_like	UniProtKB/TrEMBL
	SSF116846	UniProtKB/TrEMBL
UniProt	A0A0G2KB60	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZZ58	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GH44_RAT	UniProtKB/TrEMBL
	A0ABK0LCX5_RAT	UniProtKB/TrEMBL
	A0ABK0LRQ5_RAT	UniProtKB/TrEMBL
	A6JGX5	ENTREZGENE, UniProtKB/TrEMBL
	D3Z991	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-16	Rps6kc1	ribosomal protein S6 kinase C1	Rps6kc1	ribosomal protein S6 kinase, polypeptide C1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-03-13	Rps6kc1	ribosomal protein S6 kinase, polypeptide C1	Rps6kc1	ribosomal protein S6 kinase, polypeptide 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Rps6kc1	ribosomal protein S6 kinase, polypeptide 1	Rps6kc1_predicted	ribosomal protein S6 kinase, polypeptide 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Rps6kc1_predicted	ribosomal protein S6 kinase, polypeptide 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar