Mmd2 (monocyte to macrophage differentiation-associated 2) - Rat Genome Database

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Gene: Mmd2 (monocyte to macrophage differentiation-associated 2) Rattus norvegicus
Analyze
Symbol: Mmd2
Name: monocyte to macrophage differentiation-associated 2
RGD ID: 1306506
Description: Predicted to enable protein kinase activity. Predicted to be involved in positive regulation of Ras protein signal transduction; positive regulation of neuron differentiation; and regulation of protein localization. Predicted to be located in Golgi membrane and perinuclear region of cytoplasm. Orthologous to human MMD2 (monocyte to macrophage differentiation associated 2); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC304301; monocyte to macrophage differentiation factor 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,075,870 - 17,123,255 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1217,076,260 - 17,123,904 (+)EnsemblGRCr8
mRatBN7.21211,962,733 - 12,009,776 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,962,757 - 12,009,773 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1212,764,802 - 12,812,242 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01213,388,056 - 13,435,479 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,419,176 - 12,466,593 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01214,021,724 - 14,078,121 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1214,021,727 - 14,078,134 (+)Ensemblrn6Rnor6.0
Rnor_5.01216,049,294 - 16,105,830 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41212,359,069 - 12,406,101 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1213,745,656 - 13,792,521 (+)NCBICelera
RGSC_v3.11212,388,221 - 12,436,029 (+)NCBI
Cytogenetic Map12p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:21968647   PMID:22500632  


Genomics

Comparative Map Data
Mmd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,075,870 - 17,123,255 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1217,076,260 - 17,123,904 (+)EnsemblGRCr8
mRatBN7.21211,962,733 - 12,009,776 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,962,757 - 12,009,773 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1212,764,802 - 12,812,242 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01213,388,056 - 13,435,479 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,419,176 - 12,466,593 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01214,021,724 - 14,078,121 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1214,021,727 - 14,078,134 (+)Ensemblrn6Rnor6.0
Rnor_5.01216,049,294 - 16,105,830 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41212,359,069 - 12,406,101 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1213,745,656 - 13,792,521 (+)NCBICelera
RGSC_v3.11212,388,221 - 12,436,029 (+)NCBI
Cytogenetic Map12p11NCBI
MMD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3874,892,245 - 4,959,187 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl74,905,989 - 4,959,212 (-)Ensemblhg38GRCh38
GRCh3774,931,876 - 4,998,818 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3674,912,146 - 4,965,370 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3474,718,870 - 4,772,085NCBI
Celera74,904,710 - 4,957,925 (-)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef74,847,272 - 4,914,194 (-)NCBIHuRef
CHM1_174,931,614 - 4,998,581 (-)NCBICHM1_1
T2T-CHM13v2.075,009,495 - 5,076,475 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v274,978,231 - 5,045,199 (-)NCBI
Mmd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395142,549,229 - 142,594,886 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5142,548,113 - 142,594,555 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385142,563,480 - 142,608,936 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5142,562,358 - 142,608,800 (-)Ensemblmm10GRCm38
MGSCv375143,039,434 - 143,084,706 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365142,815,954 - 142,861,226 (-)NCBIMGSCv36mm8
Celera5139,618,828 - 139,664,260 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map581.53NCBI
Mmd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546010,893,683 - 10,911,768 (+)Ensembl
ChiLan1.0NW_00495546010,872,898 - 10,932,767 (+)NCBIChiLan1.0ChiLan1.0
MMD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v269,866,521 - 9,927,220 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1758,191,231 - 58,251,906 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v075,158,990 - 5,218,068 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.175,194,496 - 5,246,234 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl75,194,496 - 5,246,234 (-)EnsemblpanPan2panpan1.1
Mmd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,997,876 - 141,044,928 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367651,016,065 - 1,032,407 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367651,013,959 - 1,034,736 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MMD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl33,729,531 - 3,775,205 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.133,728,126 - 3,782,605 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.234,363,584 - 4,431,414 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MMD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12816,693,172 - 16,746,310 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2816,693,292 - 16,744,894 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660905,176,692 - 5,230,076 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mmd2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11610,532,046 - 10,577,466 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mmd2
784 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:120
Interacting mature miRNAs:149
Transcripts:ENSRNOT00000060608
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12592191825247790Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743833700556Rat

Markers in Region
RH133571  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21212,009,418 - 12,009,633 (+)MAPPERmRatBN7.2
Rnor_6.01214,077,764 - 14,077,978NCBIRnor6.0
Rnor_5.01216,105,473 - 16,105,687UniSTSRnor5.0
RGSC_v3.41212,405,744 - 12,405,958UniSTSRGSC3.4
Celera1213,792,164 - 13,792,378UniSTS
Cytogenetic Map12p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 8 43 154 89 82 57 33 57 6 194 96 2 140 24 74 25 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000060608   ⟹   ENSRNOP00000057341
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1217,076,260 - 17,123,252 (+)Ensembl
mRatBN7.2 Ensembl1211,962,757 - 12,009,773 (+)Ensembl
Rnor_6.0 Ensembl1214,021,727 - 14,078,134 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116328   ⟹   ENSRNOP00000089280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1217,076,260 - 17,123,904 (+)Ensembl
mRatBN7.2 Ensembl1211,992,085 - 12,009,773 (+)Ensembl
RefSeq Acc Id: NM_001037217   ⟹   NP_001032294
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81217,076,251 - 17,123,255 (+)NCBI
mRatBN7.21211,962,757 - 12,009,776 (+)NCBI
Rnor_6.01214,021,724 - 14,078,121 (+)NCBI
Rnor_5.01216,049,294 - 16,105,830 (+)NCBI
RGSC_v3.41212,359,069 - 12,406,101 (+)RGD
Celera1213,745,656 - 13,792,521 (+)RGD
Sequence:
RefSeq Acc Id: XM_063271263   ⟹   XP_063127333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81217,075,870 - 17,123,255 (+)NCBI
RefSeq Acc Id: XM_063271264   ⟹   XP_063127334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81217,075,921 - 17,115,820 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001032294 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127333 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127334 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI61816 (Get FASTA)   NCBI Sequence Viewer  
  EDL89707 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000057341.3
  ENSRNOP00000089280
  ENSRNOP00000089280.2
RefSeq Acc Id: NP_001032294   ⟸   NM_001037217
- UniProtKB: B1WBN0 (UniProtKB/TrEMBL),   F7F9F5 (UniProtKB/TrEMBL),   A0A8I6ABL5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000057341   ⟸   ENSRNOT00000060608
Ensembl Acc Id: ENSRNOP00000089280   ⟸   ENSRNOT00000116328
RefSeq Acc Id: XP_063127333   ⟸   XM_063271263
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127334   ⟸   XM_063271264
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WBN0-F1-model_v2 AlphaFold B1WBN0 1-247 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698448
Promoter ID:EPDNEW_R8973
Type:single initiation site
Name:Mmd2_1
Description:monocyte to macrophage differentiation-associated 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01214,021,733 - 14,021,793EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306506 AgrOrtholog
BioCyc Gene G2FUF-19971 BioCyc
Ensembl Genes ENSRNOG00000001113 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000060608.5 UniProtKB/TrEMBL
  ENSRNOT00000116328 ENTREZGENE
  ENSRNOT00000116328.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7320318 IMAGE-MGC_LOAD
InterPro HlyIII_related UniProtKB/TrEMBL
  HylIII UniProtKB/TrEMBL
KEGG Report rno:304301 UniProtKB/TrEMBL
MGC_CLONE MGC:187264 IMAGE-MGC_LOAD
NCBI Gene 304301 ENTREZGENE
PANTHER HlyIII_related UniProtKB/TrEMBL
  MONOCYTE TO MACROPHAGE DIFFERENTIATION FACTOR 2 UniProtKB/TrEMBL
Pfam HlyIII UniProtKB/TrEMBL
PhenoGen Mmd2 PhenoGen
RatGTEx ENSRNOG00000001113 RatGTEx
UniProt A0A8I6ABL5 ENTREZGENE, UniProtKB/TrEMBL
  B1WBN0 ENTREZGENE, UniProtKB/TrEMBL
  F7F9F5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Mmd2  monocyte to macrophage differentiation-associated 2   Mmd2_predicted  monocyte to macrophage differentiation-associated 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mmd2_predicted  monocyte to macrophage differentiation-associated 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED