Advanced Search (OLGA)

Gene: Hs3st5 (heparan sulfate-glucosamine 3-sulfotransferase 5) Rattus norvegicus

Analyze

Symbol:

Hs3st5

Name:

heparan sulfate-glucosamine 3-sulfotransferase 5

RGD ID:

1306379

Description:

Predicted to enable [heparan sulfate]-glucosamine 3-sulfotransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process; negative regulation of coagulation; and regulation of viral entry into host cell. Predicted to be located in Golgi membrane. Orthologous to human HS3ST5 (heparan sulfate-glucosamine 3-sulfotransferase 5); PARTICIPATES IN heparan sulfate biosynthetic pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

heparan sulfate (glucosamine) 3-O-sulfotransferase 5; heparan sulfate glucosamine 3-O-sulfotransferase 5; LOC294449

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	41,661,785 - 41,972,550 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	41,773,601 - 41,972,542 (+)	Ensembl				GRCr8
mRatBN7.2	20	40,106,876 - 40,417,661 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	40,106,876 - 40,417,653 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	41,824,250 - 42,156,750 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	41,483,443 - 41,815,963 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	42,228,445 - 42,571,712 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	40,236,437 - 40,545,502 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	40,236,437 - 40,545,494 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	41,969,878 - 42,279,758 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	40,711,763 - 41,022,773 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	40,863,898 - 41,173,368 (+)	NCBI		Celera
RGSC_v3.1	20	41,039,793 - 41,044,941 (+)	NCBI
Cytogenetic Map	20	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

melanoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

CGP 52608 (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dorsomorphin (ISO)

entinostat (ISO)

gentamycin (EXP)

glyphosate (EXP)

ketamine (EXP)

leflunomide (ISO)

lipopolysaccharide (ISO)

okadaic acid (ISO)

paracetamol (EXP)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

quercetin (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sunitinib (ISO)

Theaflavin 3,3'-digallate (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

heparan sulfate proteoglycan biosynthetic process (IEA,ISO)

negative regulation of coagulation (IEA,ISO)

protein sulfation (ISO)

regulation of viral entry into host cell (IEA,ISO)

Cellular Component

Golgi membrane (IEA)

Molecular Function

[heparan sulfate]-glucosamine 3-sulfotransferase activity (IBA,IEA,ISO)

protein binding (ISO)

sulfotransferase activity (IEA)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

heparan sulfate biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12138164	PMID:12740361

Genomics

Comparative Map Data

Hs3st5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	41,661,785 - 41,972,550 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	41,773,601 - 41,972,542 (+)	Ensembl				GRCr8
mRatBN7.2	20	40,106,876 - 40,417,661 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	40,106,876 - 40,417,653 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	41,824,250 - 42,156,750 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	41,483,443 - 41,815,963 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	42,228,445 - 42,571,712 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	40,236,437 - 40,545,502 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	40,236,437 - 40,545,494 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	41,969,878 - 42,279,758 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	40,711,763 - 41,022,773 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	40,863,898 - 41,173,368 (+)	NCBI		Celera
RGSC_v3.1	20	41,039,793 - 41,044,941 (+)	NCBI
Cytogenetic Map	20	q12	NCBI

HS3ST5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	114,055,596 - 114,343,023 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	114,055,093 - 114,343,209 (-)	Ensembl			hg38	GRCh38
GRCh37	6	114,376,760 - 114,664,187 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	114,485,114 - 114,490,702 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	114,485,113 - 114,490,702	NCBI
Celera	6	115,118,158 - 115,125,449 (-)	NCBI		Celera
Cytogenetic Map	6	q21-q22.1	NCBI
HuRef	6	111,953,620 - 111,960,911 (-)	NCBI		HuRef
CHM1_1	6	114,639,638 - 114,646,928 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	115,238,715 - 115,526,173 (-)	NCBI		T2T-CHM13v2.0

Hs3st5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	36,382,794 - 36,710,393 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	36,382,810 - 36,710,393 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	36,506,590 - 36,834,397 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	36,506,814 - 36,834,397 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	36,226,613 - 36,554,203 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	36,196,223 - 36,523,813 (+)	NCBI		MGSCv36	mm8
Celera	10	37,409,543 - 37,736,930 (+)	NCBI		Celera
Cytogenetic Map	10	B1	NCBI
cM Map	10	19.31	NCBI

Hs3st5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955526	2,636,579 - 2,652,405 (+)	Ensembl
ChiLan1.0	NW_004955526	2,418,217 - 2,652,025 (+)	NCBI	ChiLan1.0	ChiLan1.0

HS3ST5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	134,051,720 - 134,338,936 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	131,947,187 - 132,233,730 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	111,846,143 - 112,132,706 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	115,917,004 - 116,202,924 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	115,917,004 - 116,089,942 (-)	Ensembl			panPan2	panpan1.1

HS3ST5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	70,137,232 - 70,387,797 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	70,140,802 - 70,388,174 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	69,884,392 - 70,134,790 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	71,019,134 - 71,268,571 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	71,020,288 - 71,268,524 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	70,370,842 - 70,620,669 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	70,209,266 - 70,461,102 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	70,540,322 - 70,791,458 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Hs3st5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	105,308,246 - 105,505,241 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936679	2,539,964 - 2,547,013 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936679	2,540,894 - 2,737,462 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HS3ST5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	79,955,657 - 80,136,352 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	79,956,485 - 80,140,140 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	90,017,049 - 90,306,175 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HS3ST5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	59,486,748 - 59,774,673 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	59,598,298 - 59,774,953 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	31,859,012 - 32,137,822 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hs3st5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624856	4,661,677 - 4,691,467 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624856	4,403,071 - 4,689,535 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Hs3st5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	36,785,541 - 36,913,658 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Hs3st5
3372 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	118
Count of miRNA genes:	86
Interacting mature miRNAs:	111
Transcripts:	ENSRNOT00000000743
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	26689362	56021148	Rat
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1331747	Hrtrt16	Heart rate QTL 16	3.163		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	20	26792353	56021148	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	12243242	49189476	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	26689362	56021148	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	20745585	56021148	Rat
1598869	Memor6	Memory QTL 6	3.1		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	20	26689362	56021148	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
70158	Bp60	Blood pressure QTL 60	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	32156967	45978663	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	26689362	56021148	Rat

Markers in Region

D20Rat54

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	40,197,445 - 40,197,655 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	40,326,992 - 40,327,201	NCBI	Rnor6.0
Rnor_5.0	20	42,060,631 - 42,060,840	UniSTS	Rnor5.0
RGSC_v3.4	20	40,802,969 - 40,803,178	UniSTS	RGSC3.4
RGSC_v3.4	20	40,802,968 - 40,803,178	RGD	RGSC3.4
Celera	20	40,954,269 - 40,954,478	UniSTS
RGSC_v3.1	20	40,825,980 - 40,826,189	RGD
RH 3.4 Map	20	442.74	RGD
RH 3.4 Map	20	442.74	UniSTS
RH 2.0 Map	20	531.7	RGD
SHRSP x BN Map	20	28.7099	RGD
Cytogenetic Map	20	q12	UniSTS

RH137357

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	40,417,166 - 40,417,379 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	40,545,008 - 40,545,220	NCBI	Rnor6.0
Rnor_5.0	20	42,279,264 - 42,279,476	UniSTS	Rnor5.0
RGSC_v3.4	20	41,022,287 - 41,022,499	UniSTS	RGSC3.4
Celera	20	41,172,882 - 41,173,094	UniSTS
RH 3.4 Map	20	445.31	UniSTS
Cytogenetic Map	20	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	13	56	139	55	54	28	33	28	6	208	116	5	124	41	81	26	18	18

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000000743 ⟹ ENSRNOP00000000743

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	41,773,601 - 41,972,542 (+)	Ensembl
mRatBN7.2 Ensembl	20	40,106,876 - 40,417,653 (+)	Ensembl
Rnor_6.0 Ensembl	20	40,236,437 - 40,545,494 (+)	Ensembl

RefSeq Acc Id:

NM_001106392 ⟹ NP_001099862

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	41,661,785 - 41,972,542 (+)	NCBI
mRatBN7.2	20	40,106,876 - 40,417,653 (+)	NCBI
Rnor_6.0	20	40,236,437 - 40,545,494 (+)	NCBI
Rnor_5.0	20	41,969,878 - 42,279,758 (+)	NCBI
RGSC_v3.4	20	40,711,763 - 41,022,773 (+)	RGD
Celera	20	40,863,898 - 41,173,368 (+)	RGD

Sequence:

show sequence

CGGGAGGGTGTGGACTGGCAGCCACTCTGCAGCTGGCCGCCGGGGACCTGGTCCCTCCCGCGAG
CCGAAGTGATGGAGGGGAAGAGATCCTCTTAGACACACACGCGCGCGCACATCCCGCTGGGCAC
GTCTCCGGGAGGCTGCAGCCGGCTCAAGCGCGCCGGGGACCGGGCGGCGGCCGTGACAGCGCGA
GCGGCGGGGAGTCCGCGGTCCGCACAGCTTGGCACGGGTCGCGGGAGGACGCCCGGAGGGAAGA
TCTCTGCCGCGCTGACTGTTGCTCTTTTGAAGGCATCTCAAAGGACCGAGCTTCCTGACACTAT
AACCGCGGACGCCAGAGGCTCTGCCCCTCGCGTGCCGGGTCCGGGTCGGCGCCGGTGCCCGCCG
CGGGAGAGGAGAATGCGAGCCTCCTCCCGCAGAGCTCCTGCGGTCCCCTTTGCAGCGCTGACTC
CGGCTCCAGCGGCTGCCCCAGACGTGCCCGCGCCGCGGGAGCGCGCCCTGCCGCACCTGGCTCC
AGCCTCCTAGGGAAGTGCGCGAAACGCTCCCTAAACTCCACTACTTCTCTTCCCCACGTCCGCT
TGCCGCTCTCCGCCCCGGACACCGCAGCCGCCGCTGTCGCCGCCCCAGAGTGGAAGCCGGGCTA
CTGTGCTGCTTGTTTGCTCTGCCCGCCGGCTCGCTCCTAGCCGAGCATCCCAAACTACTGGACA
ACTGCCACTGCGATCGCGGGAACCACTCGGTGACCCGGCGCGACTGGTCTAGGCTTTCCGAGCC
CAGGCTGTCACCATTAGGGACAACGGTGAGGACAGAGTCAGAAGACCCACAACAGACACTCAGG
ACATTTCAAACTCTGAAATGTGATAACCAGGTCCTACTGGCTTCAGACTGGTGCTTTCAGTTGC
CCAACTGAGGATCTACAACAGCCAGCTGACACACTCTCGGACACTAGACAAGCCATTTTGTCAT
ATTCTTGGAAGTCTCTCCTCTGTATGTACAGAACTTCCTGGATTAACATGAAGATGTGAAGGTG
CTTACAAAGGAGGAACGGGACAACCAGGAAGTGAAACGAGGCCATGAGACAACCACTAGCCAGA
TAATCCTGTCTGGAGTAACTGAGGCGTGTCTGAATGTAGGCTGCTGCAGTCCTGAAGGTTGATG
GAGGGCCATGCTATTCAAACAGCAGGTGTGGCTAAGACAGAAGCTCCTGGTGCTTGGAAGCCTT
GCTGTTGGGAGCCTGCTGTATCTAGTTGCCAGAGTTGGGAGCTTGGATAGGCTCCAGCCCATTT
GCCCGGTTGAAAGTCGATTTGGTGCTGCCCACAACCAGGCTGAGCTCCCACTCCGAGCCCTGCA
GTTTAAAAGAGGCTTACTGCATGAGTTCCGGAAGGGCAACTCTTCCAAGGAGCAGGTACGCCTC
CATGACCTGGTCCAACAGCTCCCCAAAGCCATTATCATTGGGGTGAGGAAAGGAGGCACAAGAG
CCCTGCTAGAGATGTTGAACCTCCATCCAGCAGTGGTCAAAGCTTCCCAAGAGATCCACTTCTT
TGACAATGACGAAAATTATGCCAAGGGCATTGAGTGGTACAGGAAAAAGATGCCTTTTTCCTAC
CCTCAGCAAATCACGATCGAAAAGAGCCCGGCGTATTTCATCACCGAAGAGGTTCCAGAAAGGA
TTTACAAGATGAACTCATCCATCAAGCTGTTGATGATTGTCAGGGAGCCGACCACAAGAGCGAT
TTCTGATTACACTCAGGTGCTAGAGGGGAAGGAGAGGAAGAACAAAACCTACTATAAGTTTGAA
AAGCTGGCCATAGACCCTAATACCTGCGAGGTGAACACGAAATACAAGGCAGTTAGGACCAGCA
TCTACACAAAACATCTGGAGCGCTGGTTGAAGTACTTTCCCATTGAACAGTTTCACATCGTGGA
CGGGGACCGTCTCATCACCGAGCCTCTGCCAGAACTTCAGCTGGTGGAGAAATTCTTAAACCTT
CCTCCGAGGATAAGTCAGTACAATTTATATTTCAATGCTACCAGAGGGTTTTACTGTTTGCGAT
TTAACATTATCTTTAATAAGTGCCTGGCGGGCAGCAAGGGGCGCATCCATCCAGAGGTAGACCC
CTCCGTCGTTACCAAATTGCGCAAATTCTTTCATCCCTTTAATCAAAAATTTTACCAGATCACT
GGGAGGACATTGAACTGGCCCTAAAATAATATAGCATACAACACCATGTGTTGTATCTTGAGAC
GCATGGCGTCCCCTCTACATTAAAGTATGCACTTTCCCAGACACAGCTCCCCAATTCATTTTTC
CACGAATACTTGTACATATGCAGTGTGTGACCAAATATAAGACCAATTGTTTTTCTACTGAAAA
TTTACAAATAAATAATTAAGAAATTGCTTTCTACATAGTTGCATCTTTTAAGCTATTTACAGAA
AGAAAAGGAAAAAGAAGAGGTGGTGGGACTGGGGAAAGTGACGTCAGATATTGTCAAGTTAGTC
TTCCTTTGACTCAGAACTTGTCACCCGCTATTTATTGTCAGATTTAAGCCAAAAGATGAATGTG
TGGAAATGTACCTCTGGCTACAGAGCTTCAGGAAGTAAAGGATTCAGTTTAATGGTTCATGTGT
TTTGTTTTGTTTTTGTCCTAAGCTAACATTGGCTCTTTAATTCAAATACTTGGATTGGTGCCAG
GAAAACAGAATATGCTATTTTCTTATCATTTGAAAGAATGTCTTAGCTCATAAAATTGACATTG
TTCCAAAGTTCTTGTGGTGATTTTGCACTATTGTTTCCTCCTACGGACCACGGTGTCATTTGTA
GCATGTCAGTCACGTGCTGGAGAACCACCACACCCTTCACTTCCACGTTCGTTGTGTGTCAACA
AAGAAAAATGACCTGTACATATTTGTAAATGGTGTAAATACCCGTTTCACACTAAGTAATTCTA
TTTTGTAAACTGAATATGGCTATTTAATTTATTGTGAAAATTAAATTTATTGTGGTATTTAAAA
TGGAATGGATTAAAAATACACGATGTGCAACTTTC

hide sequence

RefSeq Acc Id:

XM_017601623 ⟹ XP_017457112

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	41,661,802 - 41,972,550 (+)	NCBI
mRatBN7.2	20	40,106,896 - 40,417,661 (+)	NCBI
Rnor_6.0	20	40,236,447 - 40,545,502 (+)	NCBI

Sequence:

show sequence

TGGACTGGCAGCCACTCTGCAGCTGGCCGCCGGGGACCTGGTCCCTCCCGCGAGCCGAAGTGAT
GGAGGGGAAGAGATCCTCTTAGACACACACGCGCGCGCACATCCCGCTGGGCACGTCTCCGGGA
GGCTGCAGCCGGCTCAAGCGCGCCGGGGACCGGGCGGCGGCCGTGACAGCGCGAGCGGCGGGGA
GTCCGCGGTCCGCACAGCTTGGCACGGGTCGCGGGAGGACGCCCGGAGGGAAGATCTCTGCCGC
GCTGACTGTTGCTCTTTTGAAGGCATCTCAAAGGACCGAGCTTCCTGACACTATAACCGCGGAC
GCCAGAGGCTCTGCCCCTCGCGTGCCGGGTCCGGGTCGGCGCCGGTGCCCGCCGCGGGAGAGGA
GAATGCGAGCCTCCTCCCGCAGAGCTCCTGCGGTCCCCTTTGCAGCGCTGACTCCGGCTCCAGC
GGCTGCCCCAGACGTGCCCGCGCCGCGGGAGCGCGCCCTGCCGCACCTGGCTCCAGCCTCCTAG
GGAAGTGCGCGAAACGCTCCCTAAACTCCACTACTTCTCTTCCCCACGTCCGCTTGCCGCTCTC
CGCCCCGGACACCGCAGCCGCCGCTGTCGCCGCCCCAGAGTGGAAGCCGGGCTACTGTGCTGCT
TGTTTGCTCTGCCCGCCGGCTCGCTCCTAGCCGAGCATCCCAAACTACTGGACAACTGCCACTG
CGATCGCGGGAACCACTCGGTGACCCGGCGCGACTGGTCTAGGCTTTCCGAGCCCAGGCTGTCA
CCATTAGGGACAACGTGATAACCAGGTCCTACTGGCTTCAGACTGGTGCTTTCAGTTGCCCAAC
TGAGGATCTACAACAGCCAGCTGACACACTCTCGGACACTAGACAAGCCATTTTGTCATATTCT
TGGAAGTCTCTCCTCTGTATGTACAGAACTTCCTGGATTAACATGAAGATGTGAAGGTGCTTAC
AAAGGAGGAACGGGACAACCAGGAAGTGAAACGAGGCCATGAGACAACCACTAGCCAGATAATC
CTGTCTGGAGTAACTGAGGCGTGTCTGAATGTAGGCTGCTGCAGTCCTGAAGGTTGATGGAGGG
CCATGCTATTCAAACAGCAGGTGTGGCTAAGACAGAAGCTCCTGGTGCTTGGAAGCCTTGCTGT
TGGGAGCCTGCTGTATCTAGTTGCCAGAGTTGGGAGCTTGGATAGGCTCCAGCCCATTTGCCCG
GTTGAAAGTCGATTTGGTGCTGCCCACAACCAGGCTGAGCTCCCACTCCGAGCCCTGCAGTTTA
AAAGAGGCTTACTGCATGAGTTCCGGAAGGGCAACTCTTCCAAGGAGCAGGTACGCCTCCATGA
CCTGGTCCAACAGCTCCCCAAAGCCATTATCATTGGGGTGAGGAAAGGAGGCACAAGAGCCCTG
CTAGAGATGTTGAACCTCCATCCAGCAGTGGTCAAAGCTTCCCAAGAGATCCACTTCTTTGACA
ATGACGAAAATTATGCCAAGGGCATTGAGTGGTACAGGAAAAAGATGCCTTTTTCCTACCCTCA
GCAAATCACGATCGAAAAGAGCCCGGCGTATTTCATCACCGAAGAGGTTCCAGAAAGGATTTAC
AAGATGAACTCATCCATCAAGCTGTTGATGATTGTCAGGGAGCCGACCACAAGAGCGATTTCTG
ATTACACTCAGGTGCTAGAGGGGAAGGAGAGGAAGAACAAAACCTACTATAAGTTTGAAAAGCT
GGCCATAGACCCTAATACCTGCGAGGTGAACACGAAATACAAGGCAGTTAGGACCAGCATCTAC
ACAAAACATCTGGAGCGCTGGTTGAAGTACTTTCCCATTGAACAGTTTCACATCGTGGACGGGG
ACCGTCTCATCACCGAGCCTCTGCCAGAACTTCAGCTGGTGGAGAAATTCTTAAACCTTCCTCC
GAGGATAAGTCAGTACAATTTATATTTCAATGCTACCAGAGGGTTTTACTGTTTGCGATTTAAC
ATTATCTTTAATAAGTGCCTGGCGGGCAGCAAGGGGCGCATCCATCCAGAGGTAGACCCCTCCG
TCGTTACCAAATTGCGCAAATTCTTTCATCCCTTTAATCAAAAATTTTACCAGATCACTGGGAG
GACATTGAACTGGCCCTAAAATAATATAGCATACAACACCATGTGTTGTATCTTGAGACGCATG
GCGTCCCCTCTACATTAAAGTATGCACTTTCCCAGACACAGCTCCCCAATTCATTTTTCCACGA
ATACTTGTACATATGCAGTGTGTGACCAAATATAAGACCAATTGTTTTTCTACTGAAAATTTAC
AAATAAATAATTAAGAAATTGCTTTCTACATAGTTGCATCTTTTAAGCTATTTACAGAAAGAAA
AGGAAAAAGAAGAGGTGGTGGGACTGGGGAAAGTGACGTCAGATATTGTCAAGTTAGTCTTCCT
TTGACTCAGAACTTGTCACCCGCTATTTATTGTCAGATTTAAGCCAAAAGATGAATGTGTGGAA
ATGTACCTCTGGCTACAGAGCTTCAGGAAGTAAAGGATTCAGTTTAATGGTTCATGTGTTTTGT
TTTGTTTTTGTCCTAAGCTAACATTGGCTCTTTAATTCAAATACTTGGATTGGTGCCAGGAAAA
CAGAATATGCTATTTTCTTATCATTTGAAAGAATGTCTTAGCTCATAAAATTGACATTGTTCCA
AAGTTCTTGTGGTGATTTTGCACTATTGTTTCCTCCTACGGACCACGGTGTCATTTGTAGCATG
TCAGTCACGTGCTGGAGAACCACCACACCCTTCACTTCCACGTTCGTTGTGTGTCAACAAAGAA
AAATGACCTGTACATATTTGTAAATGGTGTAAATACCCGTTTCACACTAAGTAATTCTATTTTG
TAAACTGAATATGGCTATTTAATTTATTGTGAAAATTAAATTTATTGTGGTATTTAAAATGGAA
TGGATTAAAAATACACGATGTGCAACTTTCCTTAAAAA

hide sequence

RefSeq Acc Id:

XM_017601625 ⟹ XP_017457114

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	41,661,802 - 41,972,550 (+)	NCBI
mRatBN7.2	20	40,106,896 - 40,417,661 (+)	NCBI
Rnor_6.0	20	40,236,447 - 40,545,502 (+)	NCBI

Sequence:

show sequence

TGGACTGGCAGCCACTCTGCAGCTGGCCGCCGGGGACCTGGTCCCTCCCGCGAGCCGAAGTGAT
GGAGGGGAAGAGATCCTCTTAGACACACACGCGCGCGCACATCCCGCTGGGCACGTCTCCGGGA
GGCTGCAGCCGGCTCAAGCGCGCCGGGGACCGGGCGGCGGCCGTGACAGCGCGAGCGGCGGGGA
GTCCGCGGTCCGCACAGCTTGGCACGGGTCGCGGGAGGACGCCCGGAGGGAAGATCTCTGCCGC
GCTGACTGTTGCTCTTTTGAAGGCATCTCAAAGGACCGAGCTTCCTGACACTATAACCGCGGAC
GCCAGAGGCTCTGCCCCTCGCGTGCCGGGTCCGGGTCGGCGCCGGTGCCCGCCGCGGGAGAGGA
GAATGCGAGCCTCCTCCCGCAGAGCTCCTGCGGTCCCCTTTGCAGCGCTGACTCCGGCTCCAGC
GGCTGCCCCAGACGTGCCCGCGCCGCGGGAGCGCGCCCTGCCGCACCTGGCTCCAGCCTCCTAG
GGAAGTGCGCGAAACGCTCCCTAAACTCCACTACTTCTCTTCCCCACGTCCGCTTGCCGCTCTC
CGCCCCGGACACCGCAGCCGCCGCTGTCGCCGCCCCAGAGTGGAAGCCGGGCTACTGTGCTGCT
TGTTTGCTCTGCCCGCCGGCTCGCTCCTAGCCGAGCATCCCAAACTACTGGACAACTGCCACTG
CGATCGCGGGAACCACTCGGTGACCCGGCGCGACTGGTCTAGGCTTTCCGAGCCCAGGCTGTCA
CCATTAGGGACAACGTGATAACCAGGTCCTACTGGCTTCAGACTGGTGCTTTCAGTTGCCCAAC
TGAGGATCTACAACAGCCAGCTGACACACTCTCGGACACTAGACAAGCCATTTTGTCATATTCT
TGGAAGTCTCTCCTCTGTATGTACAGAACTTCCTGGATTAACATGAAGATGTGAAGGTGCTTAC
AAAGGAGGAACGGGACAACCAGGAAGTGAAACGAGGCCATGAGACAACCACTAGCCAGATAATC
CTGTCTGGAGTAACTGAGGCGTGTCTGAATGCTGCTGCAGTCCTGAAGGTTGATGGAGGGCCAT
GCTATTCAAACAGCAGGTGTGGCTAAGACAGAAGCTCCTGGTGCTTGGAAGCCTTGCTGTTGGG
AGCCTGCTGTATCTAGTTGCCAGAGTTGGGAGCTTGGATAGGCTCCAGCCCATTTGCCCGGTTG
AAAGTCGATTTGGTGCTGCCCACAACCAGGCTGAGCTCCCACTCCGAGCCCTGCAGTTTAAAAG
AGGCTTACTGCATGAGTTCCGGAAGGGCAACTCTTCCAAGGAGCAGGTACGCCTCCATGACCTG
GTCCAACAGCTCCCCAAAGCCATTATCATTGGGGTGAGGAAAGGAGGCACAAGAGCCCTGCTAG
AGATGTTGAACCTCCATCCAGCAGTGGTCAAAGCTTCCCAAGAGATCCACTTCTTTGACAATGA
CGAAAATTATGCCAAGGGCATTGAGTGGTACAGGAAAAAGATGCCTTTTTCCTACCCTCAGCAA
ATCACGATCGAAAAGAGCCCGGCGTATTTCATCACCGAAGAGGTTCCAGAAAGGATTTACAAGA
TGAACTCATCCATCAAGCTGTTGATGATTGTCAGGGAGCCGACCACAAGAGCGATTTCTGATTA
CACTCAGGTGCTAGAGGGGAAGGAGAGGAAGAACAAAACCTACTATAAGTTTGAAAAGCTGGCC
ATAGACCCTAATACCTGCGAGGTGAACACGAAATACAAGGCAGTTAGGACCAGCATCTACACAA
AACATCTGGAGCGCTGGTTGAAGTACTTTCCCATTGAACAGTTTCACATCGTGGACGGGGACCG
TCTCATCACCGAGCCTCTGCCAGAACTTCAGCTGGTGGAGAAATTCTTAAACCTTCCTCCGAGG
ATAAGTCAGTACAATTTATATTTCAATGCTACCAGAGGGTTTTACTGTTTGCGATTTAACATTA
TCTTTAATAAGTGCCTGGCGGGCAGCAAGGGGCGCATCCATCCAGAGGTAGACCCCTCCGTCGT
TACCAAATTGCGCAAATTCTTTCATCCCTTTAATCAAAAATTTTACCAGATCACTGGGAGGACA
TTGAACTGGCCCTAAAATAATATAGCATACAACACCATGTGTTGTATCTTGAGACGCATGGCGT
CCCCTCTACATTAAAGTATGCACTTTCCCAGACACAGCTCCCCAATTCATTTTTCCACGAATAC
TTGTACATATGCAGTGTGTGACCAAATATAAGACCAATTGTTTTTCTACTGAAAATTTACAAAT
AAATAATTAAGAAATTGCTTTCTACATAGTTGCATCTTTTAAGCTATTTACAGAAAGAAAAGGA
AAAAGAAGAGGTGGTGGGACTGGGGAAAGTGACGTCAGATATTGTCAAGTTAGTCTTCCTTTGA
CTCAGAACTTGTCACCCGCTATTTATTGTCAGATTTAAGCCAAAAGATGAATGTGTGGAAATGT
ACCTCTGGCTACAGAGCTTCAGGAAGTAAAGGATTCAGTTTAATGGTTCATGTGTTTTGTTTTG
TTTTTGTCCTAAGCTAACATTGGCTCTTTAATTCAAATACTTGGATTGGTGCCAGGAAAACAGA
ATATGCTATTTTCTTATCATTTGAAAGAATGTCTTAGCTCATAAAATTGACATTGTTCCAAAGT
TCTTGTGGTGATTTTGCACTATTGTTTCCTCCTACGGACCACGGTGTCATTTGTAGCATGTCAG
TCACGTGCTGGAGAACCACCACACCCTTCACTTCCACGTTCGTTGTGTGTCAACAAAGAAAAAT
GACCTGTACATATTTGTAAATGGTGTAAATACCCGTTTCACACTAAGTAATTCTATTTTGTAAA
CTGAATATGGCTATTTAATTTATTGTGAAAATTAAATTTATTGTGGTATTTAAAATGGAATGGA
TTAAAAATACACGATGTGCAACTTTCCTTAAAAA

hide sequence

RefSeq Acc Id:

XM_017601626 ⟹ XP_017457115

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	41,661,785 - 41,972,550 (+)	NCBI
mRatBN7.2	20	40,106,896 - 40,417,661 (+)	NCBI
Rnor_6.0	20	40,236,447 - 40,545,502 (+)	NCBI

Sequence:

show sequence

TGGACTGGCAGCCACTCTGCAGCTGGCCGCCGGGGACCTGGTCCCTCCCGCGAGCCGAAGTGAT
GGAGGGGAAGAGATCCTCTTAGACACACACGCGCGCGCACATCCCGCTGGGCACGTCTCCGGGA
GGCTGCAGCCGGCTCAAGCGCGCCGGGGACCGGGCGGCGGCCGTGACAGCGCGAGCGGCGGGGA
GTCCGCGGTCCGCACAGCTTGGCACGGGTCGCGGGAGGACGCCCGGAGGGAAGATCTCTGCCGC
GCTGACTGTTGCTCTTTTGAAGGCATCTCAAAGGACCGAGCTTCCTGACACTATAACCGCGGAC
GCCAGAGGCTCTGCCCCTCGCGTGCCGGGTCCGGGTCGGCGCCGGTGCCCGCCGCGGGAGAGGA
GAATGCGAGCCTCCTCCCGCAGAGCTCCTGCGGTCCCCTTTGCAGCGCTGACTCCGGCTCCAGC
GGCTGCCCCAGACGTGCCCGCGCCGCGGGAGCGCGCCCTGCCGCACCTGGCTCCAGCCTCCTAG
GGAAGTGCGCGAAACGCTCCCTAAACTCCACTACTTCTCTTCCCCACGTCCGCTTGCCGCTCTC
CGCCCCGGACACCGCAGCCGCCGCTGTCGCCGCCCCAGAGTGGAAGCCGGGCTACTGTGCTGCT
TGTTTGCTCTGCCCGCCGGCTCGCTCCTAGCCGAGCATCCCAAACTACTGGACAACTGCCACTG
CGATCGCGGGAACCACTCGGTGACCCGGCGCGACTGGTCTAGGCTTTCCGAGCCCAGGCTGTCA
CCATTAGGGACAACGTGATAACCAGGTCCTACTGGCTTCAGACTGGTGCTTTCAGTTGCCCAAC
TGAGGATCTACAACAGCCAGCTGACACACTCTCGGACACTAGACAAGCCATTTTGTCATATTCT
TGGAAGTCTCTCCTCTGTATGTACAGAACTTCCTGGATTAACATGAAGATGTGAAGGCTGCTGC
AGTCCTGAAGGTTGATGGAGGGCCATGCTATTCAAACAGCAGGTGTGGCTAAGACAGAAGCTCC
TGGTGCTTGGAAGCCTTGCTGTTGGGAGCCTGCTGTATCTAGTTGCCAGAGTTGGGAGCTTGGA
TAGGCTCCAGCCCATTTGCCCGGTTGAAAGTCGATTTGGTGCTGCCCACAACCAGGCTGAGCTC
CCACTCCGAGCCCTGCAGTTTAAAAGAGGCTTACTGCATGAGTTCCGGAAGGGCAACTCTTCCA
AGGAGCAGGTACGCCTCCATGACCTGGTCCAACAGCTCCCCAAAGCCATTATCATTGGGGTGAG
GAAAGGAGGCACAAGAGCCCTGCTAGAGATGTTGAACCTCCATCCAGCAGTGGTCAAAGCTTCC
CAAGAGATCCACTTCTTTGACAATGACGAAAATTATGCCAAGGGCATTGAGTGGTACAGGAAAA
AGATGCCTTTTTCCTACCCTCAGCAAATCACGATCGAAAAGAGCCCGGCGTATTTCATCACCGA
AGAGGTTCCAGAAAGGATTTACAAGATGAACTCATCCATCAAGCTGTTGATGATTGTCAGGGAG
CCGACCACAAGAGCGATTTCTGATTACACTCAGGTGCTAGAGGGGAAGGAGAGGAAGAACAAAA
CCTACTATAAGTTTGAAAAGCTGGCCATAGACCCTAATACCTGCGAGGTGAACACGAAATACAA
GGCAGTTAGGACCAGCATCTACACAAAACATCTGGAGCGCTGGTTGAAGTACTTTCCCATTGAA
CAGTTTCACATCGTGGACGGGGACCGTCTCATCACCGAGCCTCTGCCAGAACTTCAGCTGGTGG
AGAAATTCTTAAACCTTCCTCCGAGGATAAGTCAGTACAATTTATATTTCAATGCTACCAGAGG
GTTTTACTGTTTGCGATTTAACATTATCTTTAATAAGTGCCTGGCGGGCAGCAAGGGGCGCATC
CATCCAGAGGTAGACCCCTCCGTCGTTACCAAATTGCGCAAATTCTTTCATCCCTTTAATCAAA
AATTTTACCAGATCACTGGGAGGACATTGAACTGGCCCTAAAATAATATAGCATACAACACCAT
GTGTTGTATCTTGAGACGCATGGCGTCCCCTCTACATTAAAGTATGCACTTTCCCAGACACAGC
TCCCCAATTCATTTTTCCACGAATACTTGTACATATGCAGTGTGTGACCAAATATAAGACCAAT
TGTTTTTCTACTGAAAATTTACAAATAAATAATTAAGAAATTGCTTTCTACATAGTTGCATCTT
TTAAGCTATTTACAGAAAGAAAAGGAAAAAGAAGAGGTGGTGGGACTGGGGAAAGTGACGTCAG
ATATTGTCAAGTTAGTCTTCCTTTGACTCAGAACTTGTCACCCGCTATTTATTGTCAGATTTAA
GCCAAAAGATGAATGTGTGGAAATGTACCTCTGGCTACAGAGCTTCAGGAAGTAAAGGATTCAG
TTTAATGGTTCATGTGTTTTGTTTTGTTTTTGTCCTAAGCTAACATTGGCTCTTTAATTCAAAT
ACTTGGATTGGTGCCAGGAAAACAGAATATGCTATTTTCTTATCATTTGAAAGAATGTCTTAGC
TCATAAAATTGACATTGTTCCAAAGTTCTTGTGGTGATTTTGCACTATTGTTTCCTCCTACGGA
CCACGGTGTCATTTGTAGCATGTCAGTCACGTGCTGGAGAACCACCACACCCTTCACTTCCACG
TTCGTTGTGTGTCAACAAAGAAAAATGACCTGTACATATTTGTAAATGGTGTAAATACCCGTTT
CACACTAAGTAATTCTATTTTGTAAACTGAATATGGCTATTTAATTTATTGTGAAAATTAAATT
TATTGTGGTATTTAAAATGGAATGGATTAAAAATACACGATGTGCAACTTTCCTTAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001099862	(Get FASTA)	NCBI Sequence Viewer
	NP_001421549	(Get FASTA)	NCBI Sequence Viewer
	NP_001421550	(Get FASTA)	NCBI Sequence Viewer
	XP_017457112	(Get FASTA)	NCBI Sequence Viewer
	XP_017457114	(Get FASTA)	NCBI Sequence Viewer
	XP_017457115	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL87790	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000000743
	ENSRNOP00000000743.2

RefSeq Acc Id:

NP_001099862 ⟸ NM_001106392

- UniProtKB:

D3ZDL1 (UniProtKB/TrEMBL), A6KID5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLFKQQVWLRQKLLVLGSLAVGSLLYLVARVGSLDRLQPICPVESRFGAAHNQAELPLRALQFK
RGLLHEFRKGNSSKEQVRLHDLVQQLPKAIIIGVRKGGTRALLEMLNLHPAVVKASQEIHFFDN
DENYAKGIEWYRKKMPFSYPQQITIEKSPAYFITEEVPERIYKMNSSIKLLMIVREPTTRAISD
YTQVLEGKERKNKTYYKFEKLAIDPNTCEVNTKYKAVRTSIYTKHLERWLKYFPIEQFHIVDGD
RLITEPLPELQLVEKFLNLPPRISQYNLYFNATRGFYCLRFNIIFNKCLAGSKGRIHPEVDPSV
VTKLRKFFHPFNQKFYQITGRTLNWP

hide sequence

RefSeq Acc Id:

XP_017457112 ⟸ XM_017601623

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLFKQQVWLRQKLLVLGSLAVGSLLYLVARVGSLDRLQPICPVESRFGAAHNQAELPLRALQFK
RGLLHEFRKGNSSKEQVRLHDLVQQLPKAIIIGVRKGGTRALLEMLNLHPAVVKASQEIHFFDN
DENYAKGIEWYRKKMPFSYPQQITIEKSPAYFITEEVPERIYKMNSSIKLLMIVREPTTRAISD
YTQVLEGKERKNKTYYKFEKLAIDPNTCEVNTKYKAVRTSIYTKHLERWLKYFPIEQFHIVDGD
RLITEPLPELQLVEKFLNLPPRISQYNLYFNATRGFYCLRFNIIFNKCLAGSKGRIHPEVDPSV
VTKLRKFFHPFNQKFYQITGRTLNWP

hide sequence

RefSeq Acc Id:	XP_017457114 ⟸ XM_017601625
- Peptide Label:	isoform X1
- UniProtKB:	D3ZDL1 (UniProtKB/TrEMBL), A6KID5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLFKQQVWLRQKLLVLGSLAVGSLLYLVARVGSLDRLQPICPVESRFGAAHNQAELPLRALQFK RGLLHEFRKGNSSKEQVRLHDLVQQLPKAIIIGVRKGGTRALLEMLNLHPAVVKASQEIHFFDN DENYAKGIEWYRKKMPFSYPQQITIEKSPAYFITEEVPERIYKMNSSIKLLMIVREPTTRAISD YTQVLEGKERKNKTYYKFEKLAIDPNTCEVNTKYKAVRTSIYTKHLERWLKYFPIEQFHIVDGD RLITEPLPELQLVEKFLNLPPRISQYNLYFNATRGFYCLRFNIIFNKCLAGSKGRIHPEVDPSV VTKLRKFFHPFNQKFYQITGRTLNWP hide sequence

RefSeq Acc Id:

XP_017457115 ⟸ XM_017601626

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLFKQQVWLRQKLLVLGSLAVGSLLYLVARVGSLDRLQPICPVESRFGAAHNQAELPLRALQFK
RGLLHEFRKGNSSKEQVRLHDLVQQLPKAIIIGVRKGGTRALLEMLNLHPAVVKASQEIHFFDN
DENYAKGIEWYRKKMPFSYPQQITIEKSPAYFITEEVPERIYKMNSSIKLLMIVREPTTRAISD
YTQVLEGKERKNKTYYKFEKLAIDPNTCEVNTKYKAVRTSIYTKHLERWLKYFPIEQFHIVDGD
RLITEPLPELQLVEKFLNLPPRISQYNLYFNATRGFYCLRFNIIFNKCLAGSKGRIHPEVDPSV
VTKLRKFFHPFNQKFYQITGRTLNWP

hide sequence

Ensembl Acc Id:

ENSRNOP00000000743 ⟸ ENSRNOT00000000743

Protein Domains

Sulfotransferase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZDL1-F1-model_v2	AlphaFold	D3ZDL1	1-346	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306379	AgrOrtholog
BioCyc Gene	G2FUF-3528	BioCyc
Ensembl Genes	ENSRNOG00000000605	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000000743	ENTREZGENE
	ENSRNOT00000000743.5	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	NST/OST	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Sulfotransferase_dom	UniProtKB/TrEMBL
KEGG Report	rno:294449	UniProtKB/TrEMBL
NCBI Gene	294449	ENTREZGENE
PANTHER	HEPARAN SULFATE GLUCOSAMINE 3-O-SULFOTRANSFERASE 5	UniProtKB/TrEMBL
	PTHR10605	UniProtKB/TrEMBL
Pfam	Sulfotransfer_1	UniProtKB/TrEMBL
PhenoGen	Hs3st5	PhenoGen
RatGTEx	ENSRNOG00000000605	RatGTEx
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A6KID5	ENTREZGENE, UniProtKB/TrEMBL
	D3ZDL1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-09	Hs3st5	heparan sulfate-glucosamine 3-sulfotransferase 5	Hs3st5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Hs3st5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	Hs3st5_predicted	heparan sulfate (glucosamine) 3-O-sulfotransferase 5 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Hs3st5_predicted	heparan sulfate (glucosamine) 3-O-sulfotransferase 5 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

Send us a Message

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)