Snrpd1 (small nuclear ribonucleoprotein D1 polypeptide) - Rat Genome Database

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Gene: Snrpd1 (small nuclear ribonucleoprotein D1 polypeptide) Rattus norvegicus
Analyze
Symbol: Snrpd1
Name: small nuclear ribonucleoprotein D1 polypeptide
RGD ID: 1306345
Description: Enables U1 snRNP binding activity. Predicted to be involved in spliceosomal snRNP assembly. Part of U1 snRNP. Used to study nephritis; proteinuria; and systemic lupus erythematosus. Human ortholog(s) of this gene implicated in connective tissue disease; nephritis; proteinuria; and systemic lupus erythematosus. Orthologous to human SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide); PARTICIPATES IN spliceosome pathway; systemic lupus erythematosus pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC291794; small nuclear ribonucleoprotein D1; small nuclear ribonucleoprotein Sm D1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8181,969,351 - 1,980,207 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl181,969,674 - 1,980,207 (+)EnsemblGRCr8
mRatBN7.2181,696,838 - 1,707,400 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl181,696,852 - 1,708,256 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx181,925,456 - 1,936,010 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0182,713,152 - 2,723,706 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0181,927,348 - 1,937,902 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd182,342,523 - 2,353,047 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive181,936,185 - 1,946,714 (+)NCBILyon_Normotensive
Lyon_Hypertensive181,935,740 - 1,946,269 (+)NCBILyon_Hypertensive
F344_StmMcwi181,972,653 - 1,983,207 (+)NCBIF344_StmMcwi
Rnor_6.0181,866,066 - 1,876,613 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,866,080 - 1,876,613 (+)Ensemblrn6Rnor6.0
Rnor_5.0181,898,841 - 1,909,374 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4182,001,140 - 2,011,674 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera181,578,553 - 1,589,086 (+)NCBICelera
RGSC_v3.1182,001,148 - 2,011,601 (+)NCBI
Cytogenetic Map18p13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
afimoxifene  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
GW 4064  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
menadione  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP)
PhIP  (EXP)
piroxicam  (ISO)
propiconazole  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP,ISO)
thalidomide  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
Yessotoxin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors. Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Mapping of B cell epitopes on small nuclear ribonucleoproteins that react with human autoantibodies as well as with experimentally-induced mouse monoclonal antibodies. Habets WJ, etal., J Immunol. 1989 Oct 15;143(8):2560-6.
4. Reactivities to the Sm autoantigenic complex and the synthetic SmD1-aa83-119 peptide in systemic lupus erythematosus and other autoimmune diseases. Jaekel HP, etal., J Autoimmun. 2001 Dec;17(4):347-54.
5. Induction of pathogenic anti-dsDNA antibodies is controlled on the level of B cells in a non-lupus prone mouse strain. Langnickel D, etal., J Clin Immunol. 2006 Jan;26(1):86-95.
6. Low-molecular-mass secretome profiling identifies C-C motif chemokine 5 as a potential plasma biomarker and therapeutic target for nasopharyngeal carcinoma. Lin SJ, etal., J Proteomics. 2013 Dec 6;94:186-201. doi: 10.1016/j.jprot.2013.09.013. Epub 2013 Sep 27.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Separation of nuclear protein complexes by blue native polyacrylamide gel electrophoresis. Novakova Z, etal., Electrophoresis. 2006 Apr;27(7):1277-87.
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Comprehensive gene review and curation RGD comprehensive gene curation
14. T cell reactivity against the SmD1(83-119) C terminal peptide in patients with systemic lupus erythematosus. Riemekasten G, etal., Ann Rheum Dis. 2002 Sep;61(9):779-85.
15. Identification and characterization of SmD183-119-reactive T cells that provide T cell help for pathogenic anti-double-stranded DNA antibodies. Riemekasten G, etal., Arthritis Rheum. 2003 Feb;48(2):475-85.
16. The spliceosome: design principles of a dynamic RNP machine. Wahl MC, etal., Cell. 2009 Feb 20;136(4):701-18. doi: 10.1016/j.cell.2009.02.009.
Additional References at PubMed
PMID:11991638   PMID:12477932   PMID:14524621   PMID:15146077   PMID:15369763   PMID:18984161   PMID:21113136   PMID:21516107   PMID:21630459   PMID:22658674   PMID:22681889   PMID:25555158  
PMID:26912367   PMID:28076346   PMID:28781166   PMID:35352799  


Genomics

Comparative Map Data
Snrpd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8181,969,351 - 1,980,207 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl181,969,674 - 1,980,207 (+)EnsemblGRCr8
mRatBN7.2181,696,838 - 1,707,400 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl181,696,852 - 1,708,256 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx181,925,456 - 1,936,010 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0182,713,152 - 2,723,706 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0181,927,348 - 1,937,902 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd182,342,523 - 2,353,047 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive181,936,185 - 1,946,714 (+)NCBILyon_Normotensive
Lyon_Hypertensive181,935,740 - 1,946,269 (+)NCBILyon_Hypertensive
F344_StmMcwi181,972,653 - 1,983,207 (+)NCBIF344_StmMcwi
Rnor_6.0181,866,066 - 1,876,613 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,866,080 - 1,876,613 (+)Ensemblrn6Rnor6.0
Rnor_5.0181,898,841 - 1,909,374 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4182,001,140 - 2,011,674 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera181,578,553 - 1,589,086 (+)NCBICelera
RGSC_v3.1182,001,148 - 2,011,601 (+)NCBI
Cytogenetic Map18p13NCBI
SNRPD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381821,612,314 - 21,633,520 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1821,612,314 - 21,633,524 (+)Ensemblhg38GRCh38
GRCh371819,192,275 - 19,213,481 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361817,446,258 - 17,464,206 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341817,446,257 - 17,464,206NCBI
Celera1815,998,296 - 16,016,243 (+)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1816,039,460 - 16,057,388 (+)NCBIHuRef
CHM1_11819,119,388 - 19,137,336 (+)NCBICHM1_1
T2T-CHM13v2.01821,797,409 - 21,818,615 (+)NCBIT2T-CHM13v2.0
Snrpd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391810,617,796 - 10,628,230 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1810,617,775 - 10,642,079 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381810,617,796 - 10,628,230 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1810,617,775 - 10,642,079 (+)Ensemblmm10GRCm38
MGSCv371810,617,794 - 10,628,228 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361810,617,794 - 10,628,228 (+)NCBIMGSCv36mm8
Celera1810,647,794 - 10,658,225 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map185.25NCBI
Snrpd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540210,283,970 - 10,296,495 (+)Ensembl
ChiLan1.0NW_00495540210,283,970 - 10,294,869 (+)NCBIChiLan1.0ChiLan1.0
SNRPD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21739,018,730 - 39,047,055 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11824,711,325 - 24,739,649 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01814,851,041 - 14,869,042 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11818,488,929 - 18,506,284 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1818,488,929 - 18,506,284 (+)EnsemblpanPan2panpan1.1
SNRPD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1766,407,313 - 66,421,193 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl766,407,313 - 66,421,194 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha765,861,285 - 65,875,140 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0766,471,679 - 66,485,534 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl766,458,044 - 66,492,690 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1766,137,168 - 66,151,090 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0766,160,475 - 66,174,609 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0766,461,808 - 66,475,826 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Snrpd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494462,481,006 - 62,492,718 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365501,323,378 - 1,335,069 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365501,323,351 - 1,335,074 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRPD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6106,798,265 - 106,813,816 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16106,798,201 - 106,810,178 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2699,283,755 - 99,295,334 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNRPD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11858,860,447 - 58,876,216 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1858,858,822 - 58,876,198 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605033,640,088 - 33,657,201 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrpd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477010,135,425 - 10,147,298 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477010,134,623 - 10,147,342 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Snrpd1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11533,486,442 - 33,497,141 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Snrpd1
135 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:350
Count of miRNA genes:217
Interacting mature miRNAs:251
Transcripts:ENSRNOT00000018646
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)18125071266Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
6903356Bp354Blood pressure QTL 3544.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18115642423Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18126032889Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18126032889Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18125022372Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat

Markers in Region
RH135451  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.225,204,172 - 5,204,299 (+)MAPPERmRatBN7.2
mRatBN7.2181,707,140 - 1,707,267 (+)MAPPERmRatBN7.2
Rnor_6.0181,876,354 - 1,876,480NCBIRnor6.0
Rnor_6.022,470,983 - 2,471,109NCBIRnor6.0
Rnor_5.0181,909,115 - 1,909,241UniSTSRnor5.0
Rnor_5.022,464,151 - 2,464,277UniSTSRnor5.0
RGSC_v3.422,739,783 - 2,739,909UniSTSRGSC3.4
RGSC_v3.4182,011,415 - 2,011,541UniSTSRGSC3.4
Celera181,588,827 - 1,588,953UniSTS
Celera21,675,742 - 1,675,868UniSTS
Cytogenetic Map2q11UniSTS
Cytogenetic Map18p13UniSTS
RH124565  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,556,361 - 25,556,542 (+)MAPPERmRatBN7.2
Rnor_6.0929,361,761 - 29,361,941NCBIRnor6.0
Rnor_5.0928,199,531 - 28,199,711UniSTSRnor5.0
RGSC_v3.4921,960,628 - 21,960,808UniSTSRGSC3.4
Celera923,105,209 - 23,105,389UniSTS
Cytogenetic Map18p13UniSTS
AW464517  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2181,702,901 - 1,702,997 (+)MAPPERmRatBN7.2
mRatBN7.2925,556,248 - 25,556,351 (+)MAPPERmRatBN7.2
Rnor_6.0929,361,648 - 29,361,750NCBIRnor6.0
Rnor_5.0928,199,418 - 28,199,520UniSTSRnor5.0
RGSC_v3.4921,960,515 - 21,960,617UniSTSRGSC3.4
Celera923,105,096 - 23,105,198UniSTS
Cytogenetic Map18p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000018646   ⟹   ENSRNOP00000018646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl181,969,674 - 1,980,207 (+)Ensembl
mRatBN7.2 Ensembl181,696,852 - 1,708,256 (+)Ensembl
Rnor_6.0 Ensembl181,866,080 - 1,876,613 (+)Ensembl
RefSeq Acc Id: NM_001106163   ⟹   NP_001099633
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8181,969,674 - 1,980,207 (+)NCBI
mRatBN7.2181,696,866 - 1,707,400 (+)NCBI
Dahl_SR_JrHsd182,342,523 - 2,353,047 (+)NCBI
Lyon_Normotensive181,936,185 - 1,946,714 (+)NCBI
Lyon_Hypertensive181,935,740 - 1,946,269 (+)NCBI
F344_StmMcwi181,972,653 - 1,983,207 (+)NCBI
Rnor_6.0181,866,080 - 1,876,613 (+)NCBI
Rnor_5.0181,898,841 - 1,909,374 (+)NCBI
RGSC_v3.4182,001,140 - 2,011,674 (+)RGD
Celera181,578,553 - 1,589,086 (+)RGD
Sequence:
RefSeq Acc Id: XM_008771943   ⟹   XP_008770165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8181,969,351 - 1,980,043 (+)NCBI
mRatBN7.2181,696,838 - 1,707,344 (+)NCBI
Rnor_6.0181,866,066 - 1,876,448 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001099633 (Get FASTA)   NCBI Sequence Viewer  
  XP_008770165 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI67095 (Get FASTA)   NCBI Sequence Viewer  
  EDL86672 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018646
  ENSRNOP00000018646.4
RefSeq Acc Id: NP_001099633   ⟸   NM_001106163
- UniProtKB: B2RZB7 (UniProtKB/TrEMBL),   A6KNE7 (UniProtKB/TrEMBL),   F7F176 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770165   ⟸   XM_008771943
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000018646   ⟸   ENSRNOT00000018646
Protein Domains
Sm

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RZB7-F1-model_v2 AlphaFold B2RZB7 1-119 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700630
Promoter ID:EPDNEW_R11154
Type:initiation region
Name:Snrpd1_1
Description:small nuclear ribonucleoprotein D1 polypeptide
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0181,866,109 - 1,866,169EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306345 AgrOrtholog
BioCyc Gene G2FUF-8411 BioCyc
Ensembl Genes ENSRNOG00000013714 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018646 ENTREZGENE
  ENSRNOT00000018646.7 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9091450 IMAGE-MGC_LOAD
InterPro IPR047575 UniProtKB/TrEMBL
  LSm4/Sm_D1/D3 UniProtKB/TrEMBL
  LSM_domain UniProtKB/TrEMBL
  LSM_related_domain UniProtKB/TrEMBL
  Sm_D1 UniProtKB/TrEMBL
KEGG Report rno:291794 UniProtKB/TrEMBL
MGC_CLONE MGC:189532 IMAGE-MGC_LOAD
NCBI Gene 291794 ENTREZGENE
PANTHER PTHR23338 UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PhenoGen Snrpd1 PhenoGen
PROSITE PS52002 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013714 RatGTEx
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP Sm_like_riboprot UniProtKB/TrEMBL
UniProt A6KNE7 ENTREZGENE, UniProtKB/TrEMBL
  B2RZB7 ENTREZGENE
  F7F176 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B2RZB7 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 Snrpd1  small nuclear ribonucleoprotein D1 polypeptide  Snrpd1  small nuclear ribonucleoprotein D1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Snrpd1  small nuclear ribonucleoprotein D1   Snrpd1_predicted  small nuclear ribonucleoprotein D1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Snrpd1_predicted  small nuclear ribonucleoprotein D1 (predicted)      Symbol and Name status set to approved 70820 APPROVED