Angel1 (angel homolog 1) - Rat Genome Database

Name: Angel1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Angel1 (angel homolog 1) Rattus norvegicus

Analyze

Symbol:

Angel1

Name:

angel homolog 1

RGD ID:

1306238

Description:

Predicted to enable 3'-5'-RNA exonuclease activity; eukaryotic initiation factor 4E binding activity; and protein domain specific binding activity. Predicted to be located in several cellular components, including cis-Golgi network; endoplasmic reticulum; and perinuclear region of cytoplasm. Orthologous to human ANGEL1 (angel homolog 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; gentamycin.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

angel homolog 1 (Drosophila); LOC362765; protein angel homolog 1; RGD1306238; similar to RIKEN cDNA 1110030H02

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ANGEL1 (angel homolog 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Angel1 (angel homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Angel1 (angel homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ANGEL1 (angel homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ANGEL1 (angel homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Angel1 (angel homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ANGEL1 (angel homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ANGEL1 (angel homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Angel1 (angel homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ANGEL1 (angel homolog 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Angel1 (angel homolog 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	angel1 (angel homolog 1 (Drosophila))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	angel	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	angl-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	angel1	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	112,080,074 - 112,117,178 (-)	NCBI		GRCr8
mRatBN7.2	6	106,349,125 - 106,386,202 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	106,349,126 - 106,386,209 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	106,517,892 - 106,543,458 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	106,816,745 - 106,842,312 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	106,186,400 - 106,211,968 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	110,644,327 - 110,681,397 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	110,644,267 - 110,681,408 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	119,941,589 - 119,978,472 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	110,825,006 - 110,850,916 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	110,828,535 - 110,854,396 (-)	NCBI
Celera	6	104,171,806 - 104,197,441 (-)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

CGP 52608 (ISO)

disodium selenite (ISO)

diuron (ISO)

doxorubicin (ISO)

ethanol (ISO)

gentamycin (EXP)

maneb (ISO)

methamphetamine (EXP)

paracetamol (EXP)

paraquat (ISO)

sodium arsenite (ISO)

trichloroethene (EXP)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cis-Golgi network (IEA,ISO,ISS)

cytosol (IEA,ISO,ISS)

endoplasmic reticulum (IEA,ISO,ISS)

nucleus (IEA,ISO,ISS)

perinuclear region of cytoplasm (IEA,ISO,ISS)

Molecular Function

3'-5'-RNA exonuclease activity (IBA)

catalytic activity (IEA)

eukaryotic initiation factor 4E binding (IEA,ISO,ISS)

protein domain specific binding (IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:23814182

Genomics

Comparative Map Data

Angel1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	112,080,074 - 112,117,178 (-)	NCBI		GRCr8
mRatBN7.2	6	106,349,125 - 106,386,202 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	106,349,126 - 106,386,209 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	106,517,892 - 106,543,458 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	106,816,745 - 106,842,312 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	106,186,400 - 106,211,968 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	110,644,327 - 110,681,397 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	110,644,267 - 110,681,408 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	119,941,589 - 119,978,472 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	110,825,006 - 110,850,916 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	110,828,535 - 110,854,396 (-)	NCBI
Celera	6	104,171,806 - 104,197,441 (-)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

ANGEL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	76,786,009 - 76,812,882 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	76,786,009 - 76,826,246 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	77,252,352 - 77,279,225 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	76,323,339 - 76,348,983 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	76,323,338 - 76,348,983	NCBI
Celera	14	57,292,199 - 57,317,888 (-)	NCBI		Celera
Cytogenetic Map	14	q24.3	NCBI
HuRef	14	57,422,206 - 57,447,959 (-)	NCBI		HuRef
CHM1_1	14	77,191,408 - 77,217,104 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	70,995,319 - 71,022,310 (-)	NCBI		T2T-CHM13v2.0

Angel1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	86,740,185 - 86,781,075 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	86,747,276 - 86,773,234 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	86,699,719 - 86,734,303 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	86,700,502 - 86,726,460 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	88,041,452 - 88,067,410 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	87,589,605 - 87,625,425 (-)	NCBI		MGSCv36	mm8
Celera	12	88,162,457 - 88,188,512 (-)	NCBI		Celera
Cytogenetic Map	12	D2	NCBI
cM Map	12	40.86	NCBI

Angel1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	776,213 - 797,948 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	776,213 - 805,020 (-)	NCBI	ChiLan1.0	ChiLan1.0

ANGEL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	77,871,161 - 77,910,190 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	77,088,826 - 77,126,697 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	57,340,811 - 57,368,871 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	76,548,480 - 76,597,123 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	76,550,463 - 76,573,624 (-)	Ensembl	panpan1.1		panPan2

ANGEL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	49,655,243 - 49,696,897 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	49,656,854 - 49,750,707 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	49,339,104 - 49,385,267 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	49,882,024 - 49,928,223 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	49,881,238 - 49,927,864 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	49,551,960 - 49,593,799 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	49,575,137 - 49,616,791 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	49,973,262 - 50,014,928 (-)	NCBI		UU_Cfam_GSD_1.0

Angel1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	26,343,706 - 26,369,599 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	5,698,905 - 5,718,114 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	5,699,365 - 5,717,984 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ANGEL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	99,930,684 - 99,959,417 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	99,929,401 - 99,959,441 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	105,991,733 - 105,999,661 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ANGEL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	54,051,349 - 54,102,050 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	54,048,757 - 54,079,273 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	42,250,665 - 42,291,308 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Angel1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	25,007,642 - 25,030,836 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	24,911,217 - 25,046,138 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Angel1
147 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	587
Count of miRNA genes:	266
Interacting mature miRNAs:	314
Transcripts:	ENSRNOT00000014635
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	10894415	110548006	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	15107216	107351382	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	61747639	106747639	Rat
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
1641904	Alcrsp4	Alcohol response QTL 4			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	6	67262953	112262953	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	71201409	116201409	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	72202632	115200186	Rat
70196	BpQTLcluster7	Blood pressure QTL cluster 7	6.82		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	72202632	117202632	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	72202632	130729475	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	72202632	130919985	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	72227641	130729205	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	72227641	130729205	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	73463459	109394713	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	82523650	110548006	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	83190345	106747639	Rat
738034	Anxrr5	Anxiety related response QTL 5	5.9		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	6	84130881	129130881	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	85140138	130140138	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	85140138	130140138	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	85311061	133478515	Rat
1300076	Glom8	Glomerulus QTL 8	7	0.000000009	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	86894788	131894788	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	88047916	133047916	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	89762877	106752806	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	93701310	128713626	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	94968928	137848904	Rat
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	94968928	139968928	Rat
8552796	Vie3	Viral induced encephalitis QTL 3	2.6		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	6	96833997	140994061	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	100364669	140994061	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	100671796	132340886	Rat
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	104085867	128713626	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	105156861	140994061	Rat

Markers in Region

RH136761

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	106,349,177 - 106,349,326 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	110,644,380 - 110,644,528	NCBI	Rnor6.0
Rnor_5.0	6	119,941,642 - 119,941,790	UniSTS	Rnor5.0
RGSC_v3.4	6	110,825,058 - 110,825,206	UniSTS	RGSC3.4
Celera	6	104,171,858 - 104,172,006	UniSTS
Cytogenetic Map	6	q31	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		2	2	2		2			14	18	31
Low	3	41	55	39	19	39	8	11	60	17	10	11	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000014635 ⟹ ENSRNOP00000014635

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	106,349,126 - 106,374,707 (-)	Ensembl
Rnor_6.0 Ensembl	6	110,644,328 - 110,669,910 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000078265 ⟹ ENSRNOP00000072809

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	106,349,126 - 106,386,209 (-)	Ensembl
Rnor_6.0 Ensembl	6	110,644,267 - 110,681,408 (-)	Ensembl

RefSeq Acc Id:

NM_001108717 ⟹ NP_001102187

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	112,080,075 - 112,105,657 (-)	NCBI
mRatBN7.2	6	106,349,126 - 106,374,707 (-)	NCBI
Rnor_6.0	6	110,644,328 - 110,669,910 (-)	NCBI
Rnor_5.0	6	119,941,589 - 119,978,472 (-)	NCBI
RGSC_v3.4	6	110,825,006 - 110,850,916 (-)	RGD
Celera	6	104,171,806 - 104,197,441 (-)	RGD

Sequence:

show sequence

GCCGAACAGAGGAGACCGGTGTGCAGCAGTGTGGAGGGGCGGCGGCGCGGGCAGGCGGCCGGCC
ATGATCGCGTCGTGCCTATATTACCTGCTGCTGCCGGCCGCGCGCCTCTTCCGCTTCCTCTCAG
ATGCTTTCTTTACATGTCGAAAAAATGCCCTTCTGGCGAAGAGCTCGTCCCCCCAGGTAGAGGG
TAACTTTGCCATGGCCCCTCGGGGGCCTGACCAAGAGGAGTGTGAGGGCCTGCTTCAGCAGTGG
CGAGAAGAAGGGTGGAACCAGACACTCTCAACTGCAAGTGAGGGTCCTCTTGCAGATAAGGGAC
TGGCTGAGAGCAGCCTGGCCCTCCTGATGGATAACTCTGGAGAACAGGACACTGCCTCGGAGGA
CAAGTGGTCCAGCAGGCAGCTGAGTGACCTTCGGGCAGCGGACAACCTGGACCAGCCTTTCCCT
GAGGTGCTAGGGGAGGAACCTCTGGCCGAGGATGAGGGTCCTTTGTGGGCAGCTGTTCCCGTAC
AGACAGGGCCCCAGTATGCAGACTGTGCTGTTCTCCCAATGGGTGCAATGGCTGCAGAACAATG
GGAAGAGGACCCTGCAATGGTGGCCTGGAGCATAGCACCGGAGCCTATGCCCCAGGAAGAGACT
TCCATGTGGCCCTTTGAAGGCCTGGAACAGCTGCAGCCTCCCCCAATGGAAATACCTTATCATG
AAATCCTGTGGCGAGAATGGGAGGATTTCTCCACGCAGCCAGATGCTCAGGGTCTGGAGGCAGG
AGATGGCCCTCAGTTCCAGTTCACTCTGATGTCGTATAATATCCTGGCCCAGGATCTGATGCAG
CAGAGCTCAGAGCTCTATCTGCATTGCCATCCAGACATCCTCAACTGGAATTACCGCTTTGCCA
ACCTCATGCAGGAATTCCAGCACTGGGACCCGGATATCCTGTGCCTTCAGGAAGTCCAGGAAGA
CCATTACTGGGAGCAGCTGGAGCCCTCTCTGCGGATGATGGGCTTCACCTGTTTTTACAAGAGG
AGGACTGGGTGTAAAACGGATGGCTGCGCTGTGTGCTACAAGCCCACCAGGTTCCGTCTGCTGT
GTGCCAGCCCTGTGGAGTACTTCCGGCCTGGGTTGGAGCTCCTCAATCGGGACAATGTGGGCTT
AGTGTTGCTGCTGCAGCCGCTGGTGCCAGAAGGTCTGGGGCAAGTCTCAGTGGCTCCCCTGTGT
GTGGCAAATACCCATGTCCTGTACAACCCACGTCGGGGTGATGTCAAGCTGGCCCAGATGGCCA
TTCTTCTGGCCGAGGTGGACAAGGTGGCCAGGTTGTCAGATGGCAGCCACTGCCCTATCATCTT
GTGTGGGGACCTGAATTCTGTCCCTGATTCACCTCTCTACAACTTCATCAGGGATGGAGAGCTC
CAGTACAATGGGATGCCAGCCTGGAAGGTTTCTGGACAGGAAGACTTCTCTCATCAGCTTTACC
AGAGGAAGCTGCAGGCCCCATTGTGGCCCAGCTCCCTGGGCATCACTGATTGCTGTCAATATGT
CACCTCCTGTCATCCCAAGAGATCAGAGAGACTAAAATATGGCCGAGACTTCCTACTACGATTC
CGCTTCTGCGACCTCGCTTGTCAGCGACCAGTAGGACTGGTTCTCATGGAAGGAGTGACAGACA
CTAAGCCAGATCGACCTGCTGGTTGGGCCGAGTGTATCTTTGAGGAAGAGATATCTGAACTTGA
GCCTGTCTTCCCCAGGACTATAGGCACCATCCAGCACTGCCTCCACCTGACCTCAGTATATACC
CATTTCCTGCCCCAGCACGGCCGCCCGGAGGTCACGACGATGCCCTTAGGTCTTGGGATGACAG
TGGATTACATTTTTTTCTCAGCTGAGTCCTGTGAGAATGAGAACAGAAGTGATCACAGGTTGGA
TCGAGATGGAACCCTCAAGCTCCTGGGCCGCCTCTCCCTCCTCTCTGAAGAGATTCTCTGGGCG
GCCAATGGCTTGCCCAACCCGTTCTACTCTTCAGACCATCTCTGCTTGCTTGCCAGCTTCGGCA
TGGAAGTCACTGCCCCATGAGGGCCCCCAGGGAAAGAGCTCACTGGACCGACGACTGCAAATGC
CCCGTGCTGTGGAAACTTATGCCCCTTCCCTTGTTCCCTCCTGCCCGTGGTTAGACTTTCTCCA
GGCCTGTCCACGTTCTCGGCCTGTGGTCCCTGCCCTGCCCCAACCTCTTCCTAATCCTGTGCCA
CATGCTAGGTGGCCCCGGGAGAGGTAGAGAGCATCCCCTTTCTTCTGTGTACCCAGCGCCCCCT
TCCCCCCCATTGATTTTTAATGACCAGGGTTGCGGGAGTTATTGATCTCATTGGTTATTCGCTT
TAGGCCATTTCTTGGTGGCACCCTCTGACCCAACCTTCCCCTTCCTTTCATGACCTCTGGGCTC
TGGCATGCACATGCAAGGTGTGTGTAAAGCATGAGTTCTCTTGGGGTGGGACTGCCCAGCACAG
CCAAGCCTGCTTCTGCCTAGTCCATGTGCCACCATGAGGTACTGGACTAGGGGCAGGTGGAGAG
CATGATGTAGTAGCTGTGTGCTGCCAGGAGGCAGCAAGCAGGGGCCCTTTTCTCCCAGTCAGTC
ATCTAGGCATCCTGGGCACACTTGTTATTTCTGGAGACAAACTGGCCCACAGCCTGGAGCGGTA
GCCCAGGGATACCCCACACCTCTGATCTCCTCACTGACTTCCTTGAGGAAGGCGGTTGATGCCT
TGTGCTGGGGCTCGCTGGGCTGGCACAGTGCTGGGAGGCTTTAAGGATGAGGAGACTCCACCTT
CAGGGAACTGTTGTCTCACCAGACTGAGGAACTGGGTAAGAGGCGGAGCCCGGTAGAAAGAGCA
GGAGGCTCTACAGCCTTAGCCAGCACTGGAGCCCCAGAGGGCTTGACCTCTGACCTCTGTGCAC
CTAAGAAAGTTTCTTTGCTTCTTCTCCCCACCCACCCCCACCCCCTCTTGTTCCCTTCCATTTT
CTCTCCGGAGAAGCGTGCTGTTTAGCTCAGGCCAAAACATCTCAACAGAAGCCTGGCTTTGGGC
ACACTAGGTCTAAGAACTCAGGGTGGCAGTGCTTACTCATTTGCTCTGCCTTTCCTCCCCAAAA
GTGGGCTCCCTAACCTACAGAAAACCCCTGTAGCCCAAACCATGTCACCTGCATGCCTTATTCA
GTGCTGGGGTACAGCCTAGGGTGTCCTTGGGCCAGATCCTCCACACAGCTTTAACTCAAAATAT
CTGCTGGCCCTAGTTGGGAGGGAATTGACTGAGGCTGGAGTTAGGCTTGGTGGACCAGGAGCCC
CATTCTTCCCTTGATTTGGAAGCCAAAAACCCAGCTGGAACGCTGCTGCTGCACTGCTGACTCT
CAGCTTCCCATGCTCAGGTCTGGGGACTTCTTGTCCTGTGTGTGTCTATTTTAAGTTTTGTTCT
CTGGGTACTGGGCATCTGCCTGTCTGAGCCCCAGGCCCATCTGCCCACAACCCACTTTTCTCTG
TCACTCTCTGGGCACCTCCTGAGATGGCCCCACAGCTGAGCCCTGCTGGTTCTCAGAACAGGGC
CAATGATTGTTCCCTCTGCCAGGAAATGCAGGGTCAACTGCTAAAGAAGGTGGAGGCCCAGAGC
TTGATGGTTTATCTTTTCCTTGTTTCTCCTTTGTTTCTGTTTTAGAAATGAAGTGTGGGGGTTT
AAATGGCATTTAAGCTGTACCCTGGAGCCGGCAGAACCAGGCAACGTTTTTTTCAAATAAAGGC
TTATCATGCCCCCT

hide sequence

RefSeq Acc Id:

XM_006240392 ⟹ XP_006240454

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	112,080,074 - 112,117,158 (-)	NCBI
mRatBN7.2	6	106,349,125 - 106,386,202 (-)	NCBI
Rnor_6.0	6	110,644,327 - 110,681,397 (-)	NCBI
Rnor_5.0	6	119,941,589 - 119,978,472 (-)	NCBI

Sequence:

show sequence

GGCCTCCCACCCTTTTGGTGGCTCTGGTGGTCATCTTTTCTCATATGTTTGCTGGGTCTAAGCC
CAGACTTGGCTGTGAGTGCTCGGGTGCTGTAGGAGGGCCTCTTAGTGACAGCCTAATTCCTTCT
GAGTTAGCACCAACCCCAAGGCTCCTAGTCAGGTGACTGTGAAGCGCCGCCACCATGTTTTTTT
CTCAAGGTGGCTGCGCTTCAGGTACGAAGTATTTCAGTGATGGGTGAAGTCAGGTTTCTTCTAC
CCAGTTCGTCCTTTTTGCTCGCACCCGTGGGAGAGCATCCTCGACCTTGGCACAGAAGAACAAA
AATCAAAGCACCACAAGCATATGTCCTATCAGCACGGTTCGTTGCTACCCCAGCATTGCTCACG
CCAGACTCCTAAGCTGTTTAACTTGAGGCCAGCATTCCCCACTCAGCTGTGCTCGCATGTGGAG
TTGAAGTTCACTCGAGGTGCAGTGTCGAGAGATCCCAAGGGCTTGTCCATTGTTCCTTGATTAA
GGCTTCAGGGCGTCAACAGTCAGTTCGTCAGTATTATGATGTATCCAGCTGGTCCAGGATCTGG
TGACTCCCCAGAGGGCTTCCCTGAACAGCCAAGGCTCCAGTCACAAATTGGAAACGGCGCAGCT
CAGACACTGGATGCTTTCTTTACATGTCGAAAAAATGCCCTTCTGGCGAAGAGCTCGTCCCCCC
AGGTAGAGGGTAACTTTGCCATGGCCCCTCGGGGGCCTGACCAAGAGGAGTGTGAGGGCCTGCT
TCAGCAGTGGCGAGAAGAAGGGTGGAACCAGACACTCTCAACTGCAAGTGAGGGTCCTCTTGCA
GATAAGGGACTGGCTGAGAGCAGCCTGGCCCTCCTGATGGATAACTCTGGAGAACAGGACACTG
CCTCGGAGGACAAGTGGTCCAGCAGGCAGCTGAGTGACCTTCGGGCAGCGGACAACCTGGACCA
GCCTTTCCCTGAGGTGCTAGGGGAGGAACCTCTGGCCGAGGATGAGGGTCCTTTGTGGGCAGCT
GTTCCCGTACAGACAGGGCCCCAGTATGCAGACTGTGCTGTTCTCCCAATGGGTGCAATGGCTG
CAGAACAATGGGAAGAGGACCCTGCAATGGTGGCCTGGAGCATAGCACCGGAGCCTATGCCCCA
GGAAGAGACTTCCATGTGGCCCTTTGAAGGCCTGGAACAGCTGCAGCCTCCCCCAATGGAAATA
CCTTATCATGAAATCCTGTGGCGAGAATGGGAGGATTTCTCCACGCAGCCAGATGCTCAGGGTC
TGGAGGCAGGAGATGGCCCTCAGTTCCAGTTCACTCTGATGTCGTATAATATCCTGGCCCAGGA
TCTGATGCAGCAGAGCTCAGAGCTCTATCTGCATTGCCATCCAGACATCCTCAACTGGAATTAC
CGCTTTGCCAACCTCATGCAGGAATTCCAGCACTGGGACCCGGATATCCTGTGCCTTCAGGAAG
TCCAGGAAGACCATTACTGGGAGCAGCTGGAGCCCTCTCTGCGGATGATGGGCTTCACCTGTTT
TTACAAGAGGAGGACTGGGTGTAAAACGGATGGCTGCGCTGTGTGCTACAAGCCCACCAGGTTC
CGTCTGCTGTGTGCCAGCCCTGTGGAGTACTTCCGGCCTGGGTTGGAGCTCCTCAATCGGGACA
ATGTGGGCTTAGTGTTGCTGCTGCAGCCGCTGGTGCCAGAAGGTCTGGGGCAAGTCTCAGTGGC
TCCCCTGTGTGTGGCAAATACCCATGTCCTGTACAACCCACGTCGGGGTGATGTCAAGCTGGCC
CAGATGGCCATTCTTCTGGCCGAGGTGGACAAGGTGGCCAGGTTGTCAGATGGCAGCCACTGCC
CTATCATCTTGTGTGGGGACCTGAATTCTGTCCCTGATTCACCTCTCTACAACTTCATCAGGGA
TGGAGAGCTCCAGTACAATGGGATGCCAGCCTGGAAGGTTTCTGGACAGGAAGACTTCTCTCAT
CAGCTTTACCAGAGGAAGCTGCAGGCCCCATTGTGGCCCAGCTCCCTGGGCATCACTGATTGCT
GTCAATATGTCACCTCCTGTCATCCCAAGAGATCAGAGAGACTAAAATATGGCCGAGACTTCCT
ACTACGATTCCGCTTCTGCGACCTCGCTTGTCAGCGACCAGTAGGACTGGTTCTCATGGAAGGA
GTGACAGACACTAAGCCAGATCGACCTGCTGGTTGGGCCGAGTGTATCTTTGAGGAAGAGATAT
CTGAACTTGAGCCTGTCTTCCCCAGGACTATAGGCACCATCCAGCACTGCCTCCACCTGACCTC
AGTATATACCCATTTCCTGCCCCAGCACGGCCGCCCGGAGGTCACGACGATGCCCTTAGGTCTT
GGGATGACAGTGGATTACATTTTTTTCTCAGCTGAGTCCTGTGAGAATGAGAACAGAAGTGATC
ACAGGTTGGATCGAGATGGAACCCTCAAGCTCCTGGGCCGCCTCTCCCTCCTCTCTGAAGAGAT
TCTCTGGGCGGCCAATGGCTTGCCCAACCCGTTCTACTCTTCAGACCATCTCTGCTTGCTTGCC
AGCTTCGGCATGGAAGTCACTGCCCCATGAGGGCCCCCAGGGAAAGAGCTCACTGGACCGACGA
CTGCAAATGCCCCGTGCTGTGGAAACTTATGCCCCTTCCCTTGTTCCCTCCTGCCCGTGGTTAG
ACTTTCTCCAGGCCTGTCCACGTTCTCGGCCTGTGGTCCCTGCCCTGCCCCAACCTCTTCCTAA
TCCTGTGCCACATGCTAGGTGGCCCCGGGAGAGGTAGAGAGCATCCCCTTTCTTCTGTGTACCC
AGCGCCCCCTTCCCCCCCATTGATTTTTAATGACCAGGGTTGCGGGAGTTATTGATCTCATTGG
TTATTCGCTTTAGGCCATTTCTTGGTGGCACCCTCTGACCCAACCTTCCCCTTCCTTTCATGAC
CTCTGGGCTCTGGCATGCACATGCAAGGTGTGTGTAAAGCATGAGTTCTCTTGGGGTGGGACTG
CCCAGCACAGCCAAGCCTGCTTCTGCCTAGTCCATGTGCCACCATGAGGTACTGGACTAGGGGC
AGGTGGAGAGCATGATGTAGTAGCTGTGTGCTGCCAGGAGGCAGCAAGCAGGGGCCCTTTTCTC
CCAGTCAGTCATCTAGGCATCCTGGGCACACTTGTTATTTCTGGAGACAAACTGGCCCACAGCC
TGGAGCGGTAGCCCAGGGATACCCCACACCTCTGATCTCCTCACTGACTTCCTTGAGGAAGGCG
GTTGATGCCTTGTGCTGGGGCTCGCTGGGCTGGCACAGTGCTGGGAGGCTTTAAGGATGAGGAG
ACTCCACCTTCAGGGAACTGTTGTCTCACCAGACTGAGGAACTGGGTAAGAGGCGGAGCCCGGT
AGAAAGAGCAGGAGGCTCTACAGCCTTAGCCAGCACTGGAGCCCCAGAGGGCTTGACCTCTGAC
CTCTGTGCACCTAAGAAAGTTTCTTTGCTTCTTCTCCCCACCCACCCCCACCCCCTCTTGTTCC
CTTCCATTTTCTCTCCGGAGAAGCGTGCTGTTTAGCTCAGGCCAAAACATCTCAACAGAAGCCT
GGCTTTGGGCACACTAGGTCTAAGAACTCAGGGTGGCAGTGCTTACTCATTTGCTCTGCCTTTC
CTCCCCAAAAGTGGGCTCCCTAACCTACAGAAAACCCCTGTAGCCCAAACCATGTCACCTGCAT
GCCTTATTCAGTGCTGGGGTACAGCCTAGGGTGTCCTTGGGCCAGATCCTCCACACAGCTTTAA
CTCAAAATATCTGCTGGCCCTAGTTGGGAGGGAATTGACTGAGGCTGGAGTTAGGCTTGGTGGA
CCAGGAGCCCCATTCTTCCCTTGATTTGGAAGCCAAAAACCCAGCTGGAACGCTGCTGCTGCAC
TGCTGACTCTCAGCTTCCCATGCTCAGGTCTGGGGACTTCTTGTCCTGTGTGTGTCTATTTTAA
GTTTTGTTCTCTGGGTACTGGGCATCTGCCTGTCTGAGCCCCAGGCCCATCTGCCCACAACCCA
CTTTTCTCTGTCACTCTCTGGGCACCTCCTGAGATGGCCCCACAGCTGAGCCCTGCTGGTTCTC
AGAACAGGGCCAATGATTGTTCCCTCTGCCAGGAAATGCAGGGTCAACTGCTAAAGAAGGTGGA
GGCCCAGAGCTTGATGGTTTATCTTTTCCTTGTTTCTCCTTTGTTTCTGTTTTAGAAATGAAGT
GTGGGGGTTTAAATGGCATTTAAGCTGTACCCTGGAGCCGGCAGAACCAGGCAACGTTTTTTTC
AAATAAAGGCTTATCATGCCCCCTA

hide sequence

RefSeq Acc Id:

XM_008764815 ⟹ XP_008763037

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	112,080,074 - 112,105,473 (-)	NCBI
mRatBN7.2	6	106,349,125 - 106,374,515 (-)	NCBI
Rnor_6.0	6	110,644,327 - 110,669,755 (-)	NCBI

Sequence:

show sequence

GAGCCGGGTCTGCCCCTATTGGGCTCCTGGGGCGGAGCGTCAGGCCGCATGACCGCAGTCCTCT
GCCAAGTGTGAGGTGGTCCGCGGGCCGTCCTGGCCCCACGAGGCTTGGGCTGACCGGCGACTCT
CGTGGGCAGCCCCTCCTCACGCTGTGGTCTGGTGACGTCGGGCCACGGTTAACGTGGACCCAGG
GCTGGGGAAGGGGGCGTCTTCCTTGGCTGTGGCGGTGGTCCTGGGGCAGGCTGAGACACTCCCG
GGGATCGGGAGCGGTGGCAACCCGGGACAGGCGAGGACCGGACTTCTCGGCGGATGCTTTCTTT
ACATGTCGAAAAAATGCCCTTCTGGCGAAGAGCTCGTCCCCCCAGGTAGAGGGTAACTTTGCCA
TGGCCCCTCGGGGGCCTGACCAAGAGGAGTGTGAGGGCCTGCTTCAGCAGTGGCGAGAAGAAGG
GTGGAACCAGACACTCTCAACTGCAAGTGAGGGTCCTCTTGCAGATAAGGGACTGGCTGAGAGC
AGCCTGGCCCTCCTGATGGATAACTCTGGAGAACAGGACACTGCCTCGGAGGACAAGTGGTCCA
GCAGGCAGCTGAGTGACCTTCGGGCAGCGGACAACCTGGACCAGCCTTTCCCTGAGGTGCTAGG
GGAGGAACCTCTGGCCGAGGATGAGGGTCCTTTGTGGGCAGCTGTTCCCGTACAGACAGGGCCC
CAGTATGCAGACTGTGCTGTTCTCCCAATGGGTGCAATGGCTGCAGAACAATGGGAAGAGGACC
CTGCAATGGTGGCCTGGAGCATAGCACCGGAGCCTATGCCCCAGGAAGAGACTTCCATGTGGCC
CTTTGAAGGCCTGGAACAGCTGCAGCCTCCCCCAATGGAAATACCTTATCATGAAATCCTGTGG
CGAGAATGGGAGGATTTCTCCACGCAGCCAGATGCTCAGGGTCTGGAGGCAGGAGATGGCCCTC
AGTTCCAGTTCACTCTGATGTCGTATAATATCCTGGCCCAGGATCTGATGCAGCAGAGCTCAGA
GCTCTATCTGCATTGCCATCCAGACATCCTCAACTGGAATTACCGCTTTGCCAACCTCATGCAG
GAATTCCAGCACTGGGACCCGGATATCCTGTGCCTTCAGGAAGTCCAGGAAGACCATTACTGGG
AGCAGCTGGAGCCCTCTCTGCGGATGATGGGCTTCACCTGTTTTTACAAGAGGAGGACTGGGTG
TAAAACGGATGGCTGCGCTGTGTGCTACAAGCCCACCAGGTTCCGTCTGCTGTGTGCCAGCCCT
GTGGAGTACTTCCGGCCTGGGTTGGAGCTCCTCAATCGGGACAATGTGGGCTTAGTGTTGCTGC
TGCAGCCGCTGGTGCCAGAAGGTCTGGGGCAAGTCTCAGTGGCTCCCCTGTGTGTGGCAAATAC
CCATGTCCTGTACAACCCACGTCGGGGTGATGTCAAGCTGGCCCAGATGGCCATTCTTCTGGCC
GAGGTGGACAAGGTGGCCAGGTTGTCAGATGGCAGCCACTGCCCTATCATCTTGTGTGGGGACC
TGAATTCTGTCCCTGATTCACCTCTCTACAACTTCATCAGGGATGGAGAGCTCCAGTACAATGG
GATGCCAGCCTGGAAGGTTTCTGGACAGGAAGACTTCTCTCATCAGCTTTACCAGAGGAAGCTG
CAGGCCCCATTGTGGCCCAGCTCCCTGGGCATCACTGATTGCTGTCAATATGTCACCTCCTGTC
ATCCCAAGAGATCAGAGAGACTAAAATATGGCCGAGACTTCCTACTACGATTCCGCTTCTGCGA
CCTCGCTTGTCAGCGACCAGTAGGACTGGTTCTCATGGAAGGAGTGACAGACACTAAGCCAGAT
CGACCTGCTGGTTGGGCCGAGTGTATCTTTGAGGAAGAGATATCTGAACTTGAGCCTGTCTTCC
CCAGGACTATAGGCACCATCCAGCACTGCCTCCACCTGACCTCAGTATATACCCATTTCCTGCC
CCAGCACGGCCGCCCGGAGGTCACGACGATGCCCTTAGGTCTTGGGATGACAGTGGATTACATT
TTTTTCTCAGCTGAGTCCTGTGAGAATGAGAACAGAAGTGATCACAGGTTGGATCGAGATGGAA
CCCTCAAGCTCCTGGGCCGCCTCTCCCTCCTCTCTGAAGAGATTCTCTGGGCGGCCAATGGCTT
GCCCAACCCGTTCTACTCTTCAGACCATCTCTGCTTGCTTGCCAGCTTCGGCATGGAAGTCACT
GCCCCATGAGGGCCCCCAGGGAAAGAGCTCACTGGACCGACGACTGCAAATGCCCCGTGCTGTG
GAAACTTATGCCCCTTCCCTTGTTCCCTCCTGCCCGTGGTTAGACTTTCTCCAGGCCTGTCCAC
GTTCTCGGCCTGTGGTCCCTGCCCTGCCCCAACCTCTTCCTAATCCTGTGCCACATGCTAGGTG
GCCCCGGGAGAGGTAGAGAGCATCCCCTTTCTTCTGTGTACCCAGCGCCCCCTTCCCCCCCATT
GATTTTTAATGACCAGGGTTGCGGGAGTTATTGATCTCATTGGTTATTCGCTTTAGGCCATTTC
TTGGTGGCACCCTCTGACCCAACCTTCCCCTTCCTTTCATGACCTCTGGGCTCTGGCATGCACA
TGCAAGGTGTGTGTAAAGCATGAGTTCTCTTGGGGTGGGACTGCCCAGCACAGCCAAGCCTGCT
TCTGCCTAGTCCATGTGCCACCATGAGGTACTGGACTAGGGGCAGGTGGAGAGCATGATGTAGT
AGCTGTGTGCTGCCAGGAGGCAGCAAGCAGGGGCCCTTTTCTCCCAGTCAGTCATCTAGGCATC
CTGGGCACACTTGTTATTTCTGGAGACAAACTGGCCCACAGCCTGGAGCGGTAGCCCAGGGATA
CCCCACACCTCTGATCTCCTCACTGACTTCCTTGAGGAAGGCGGTTGATGCCTTGTGCTGGGGC
TCGCTGGGCTGGCACAGTGCTGGGAGGCTTTAAGGATGAGGAGACTCCACCTTCAGGGAACTGT
TGTCTCACCAGACTGAGGAACTGGGTAAGAGGCGGAGCCCGGTAGAAAGAGCAGGAGGCTCTAC
AGCCTTAGCCAGCACTGGAGCCCCAGAGGGCTTGACCTCTGACCTCTGTGCACCTAAGAAAGTT
TCTTTGCTTCTTCTCCCCACCCACCCCCACCCCCTCTTGTTCCCTTCCATTTTCTCTCCGGAGA
AGCGTGCTGTTTAGCTCAGGCCAAAACATCTCAACAGAAGCCTGGCTTTGGGCACACTAGGTCT
AAGAACTCAGGGTGGCAGTGCTTACTCATTTGCTCTGCCTTTCCTCCCCAAAAGTGGGCTCCCT
AACCTACAGAAAACCCCTGTAGCCCAAACCATGTCACCTGCATGCCTTATTCAGTGCTGGGGTA
CAGCCTAGGGTGTCCTTGGGCCAGATCCTCCACACAGCTTTAACTCAAAATATCTGCTGGCCCT
AGTTGGGAGGGAATTGACTGAGGCTGGAGTTAGGCTTGGTGGACCAGGAGCCCCATTCTTCCCT
TGATTTGGAAGCCAAAAACCCAGCTGGAACGCTGCTGCTGCACTGCTGACTCTCAGCTTCCCAT
GCTCAGGTCTGGGGACTTCTTGTCCTGTGTGTGTCTATTTTAAGTTTTGTTCTCTGGGTACTGG
GCATCTGCCTGTCTGAGCCCCAGGCCCATCTGCCCACAACCCACTTTTCTCTGTCACTCTCTGG
GCACCTCCTGAGATGGCCCCACAGCTGAGCCCTGCTGGTTCTCAGAACAGGGCCAATGATTGTT
CCCTCTGCCAGGAAATGCAGGGTCAACTGCTAAAGAAGGTGGAGGCCCAGAGCTTGATGGTTTA
TCTTTTCCTTGTTTCTCCTTTGTTTCTGTTTTAGAAATGAAGTGTGGGGGTTTAAATGGCATTT
AAGCTGTACCCTGGAGCCGGCAGAACCAGGCAACGTTTTTTTCAAATAAAGGCTTATCATGCCC
CCTA

hide sequence

RefSeq Acc Id:

XM_017594229 ⟹ XP_017449718

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	112,080,074 - 112,117,178 (-)	NCBI
mRatBN7.2	6	106,349,125 - 106,386,202 (-)	NCBI
Rnor_6.0	6	110,644,327 - 110,681,397 (-)	NCBI

Sequence:

show sequence

GGCCTCCCACCCTTTTGGTGGCTCTGGTGGTCATCTTTTCTCATATGTTTGCTGGGTCTAAGCC
CAGACTTGGCTGTGAGTGCTCGGGTGCTGTAGGAGGGCCTCTTAGTGACAGCCTAATTCCTTCT
GAGTTAGCACCAACCCCAAGGCTCCTAGTCAGGTGACTGTGAAGCGCCGCCACCATGTTTTTTT
CTCAAGGTGGCTGCGCTTCAGGTACGAAGTATTTCAGTGATGGGTGAAGTCAGGTTTCTTCTAC
CCAGTTCGTCCTTTTTGCTCGCACCCGTGGGAGAGCATCCTCGACCTTGGCACAGAAGAACAAA
AATCAAAGCACCACAAGCATATGTCCTATCAGCACGGTTCGTTGCTACCCCAGCATTGCTCACG
CCAGACTCCTAAGCTGTTTAACTTGAGGCCAGCATTCCCCACTCAGCTGTGCTCGCATGTGGAG
TTGAAGTTCACTCGAGGTGCAGTGTCGAGAGATCCCAAGGGCTTGTCCATTGTTCCTTGATTAA
GGCTTCAGGGCGTCAACAGTCAGGGTCTCTTGCTGAACTCGGAACTCATTGATTGGCTAGAGTG
GCTGACTAGTGAACCCCAAGATCCTCCTGTCTTCACCAAACACTGTTGGGATTACAGGGGTACA
TTGCTTTTTATGTGGATGCTGGGGATTCGAATTCAAGCCATCACGCTTGCCAGCTAAGCCATCT
TCCTAGCGCTAGATGCCTTGGCTGAATCTATGTCTGTGTGCCACTTATATGCCTGGTGCCTGCA
GAGCCTAGAAGAGGGGAGTTACAGATGACTGTGAGCCACCATTTCGTCAGTATTATGATGTATC
CAGCTGGTCCAGGATCTGGTGACTCCCCAGAGGGCTTCCCTGAACAGCCAAGGCTCCAGTCACA
AATTGGAAACGGCGCAGCTCAGACACTGGATGCTTTCTTTACATGTCGAAAAAATGCCCTTCTG
GCGAAGAGCTCGTCCCCCCAGGTAGAGGGTAACTTTGCCATGGCCCCTCGGGGGCCTGACCAAG
AGGAGTGTGAGGGCCTGCTTCAGCAGTGGCGAGAAGAAGGGTGGAACCAGACACTCTCAACTGC
AAGTGAGGGTCCTCTTGCAGATAAGGGACTGGCTGAGAGCAGCCTGGCCCTCCTGATGGATAAC
TCTGGAGAACAGGACACTGCCTCGGAGGACAAGTGGTCCAGCAGGCAGCTGAGTGACCTTCGGG
CAGCGGACAACCTGGACCAGCCTTTCCCTGAGGTGCTAGGGGAGGAACCTCTGGCCGAGGATGA
GGGTCCTTTGTGGGCAGCTGTTCCCGTACAGACAGGGCCCCAGTATGCAGACTGTGCTGTTCTC
CCAATGGGTGCAATGGCTGCAGAACAATGGGAAGAGGACCCTGCAATGGTGGCCTGGAGCATAG
CACCGGAGCCTATGCCCCAGGAAGAGACTTCCATGTGGCCCTTTGAAGGCCTGGAACAGCTGCA
GCCTCCCCCAATGGAAATACCTTATCATGAAATCCTGTGGCGAGAATGGGAGGATTTCTCCACG
CAGCCAGATGCTCAGGGTCTGGAGGCAGGAGATGGCCCTCAGTTCCAGTTCACTCTGATGTCGT
ATAATATCCTGGCCCAGGATCTGATGCAGCAGAGCTCAGAGCTCTATCTGCATTGCCATCCAGA
CATCCTCAACTGGAATTACCGCTTTGCCAACCTCATGCAGGAATTCCAGCACTGGGACCCGGAT
ATCCTGTGCCTTCAGGAAGTCCAGGAAGACCATTACTGGGAGCAGCTGGAGCCCTCTCTGCGGA
TGATGGGCTTCACCTGTTTTTACAAGAGGAGGACTGGGTGTAAAACGGATGGCTGCGCTGTGTG
CTACAAGCCCACCAGGTTCCGTCTGCTGTGTGCCAGCCCTGTGGAGTACTTCCGGCCTGGGTTG
GAGCTCCTCAATCGGGACAATGTGGGCTTAGTGTTGCTGCTGCAGCCGCTGGTGCCAGAAGGTC
TGGGGCAAGTCTCAGTGGCTCCCCTGTGTGTGGCAAATACCCATGTCCTGTACAACCCACGTCG
GGGTGATGTCAAGCTGGCCCAGATGGCCATTCTTCTGGCCGAGGTGGACAAGGTGGCCAGGTTG
TCAGATGGCAGCCACTGCCCTATCATCTTGTGTGGGGACCTGAATTCTGTCCCTGATTCACCTC
TCTACAACTTCATCAGGGATGGAGAGCTCCAGTACAATGGGATGCCAGCCTGGAAGGTTTCTGG
ACAGGAAGACTTCTCTCATCAGCTTTACCAGAGGAAGCTGCAGGCCCCATTGTGGCCCAGCTCC
CTGGGCATCACTGATTGCTGTCAATATGTCACCTCCTGTCATCCCAAGAGATCAGAGAGACTAA
AATATGGCCGAGACTTCCTACTACGATTCCGCTTCTGCGACCTCGCTTGTCAGCGACCAGTAGG
ACTGGTTCTCATGGAAGGAGTGACAGACACTAAGCCAGATCGACCTGCTGGTTGGGCCGAGTGT
ATCTTTGAGGAAGAGATATCTGAACTTGAGCCTGTCTTCCCCAGGACTATAGGCACCATCCAGC
ACTGCCTCCACCTGACCTCAGTATATACCCATTTCCTGCCCCAGCACGGCCGCCCGGAGGTCAC
GACGATGCCCTTAGGTCTTGGGATGACAGTGGATTACATTTTTTTCTCAGCTGAGTCCTGTGAG
AATGAGAACAGAAGTGATCACAGGTTGGATCGAGATGGAACCCTCAAGCTCCTGGGCCGCCTCT
CCCTCCTCTCTGAAGAGATTCTCTGGGCGGCCAATGGCTTGCCCAACCCGTTCTACTCTTCAGA
CCATCTCTGCTTGCTTGCCAGCTTCGGCATGGAAGTCACTGCCCCATGAGGGCCCCCAGGGAAA
GAGCTCACTGGACCGACGACTGCAAATGCCCCGTGCTGTGGAAACTTATGCCCCTTCCCTTGTT
CCCTCCTGCCCGTGGTTAGACTTTCTCCAGGCCTGTCCACGTTCTCGGCCTGTGGTCCCTGCCC
TGCCCCAACCTCTTCCTAATCCTGTGCCACATGCTAGGTGGCCCCGGGAGAGGTAGAGAGCATC
CCCTTTCTTCTGTGTACCCAGCGCCCCCTTCCCCCCCATTGATTTTTAATGACCAGGGTTGCGG
GAGTTATTGATCTCATTGGTTATTCGCTTTAGGCCATTTCTTGGTGGCACCCTCTGACCCAACC
TTCCCCTTCCTTTCATGACCTCTGGGCTCTGGCATGCACATGCAAGGTGTGTGTAAAGCATGAG
TTCTCTTGGGGTGGGACTGCCCAGCACAGCCAAGCCTGCTTCTGCCTAGTCCATGTGCCACCAT
GAGGTACTGGACTAGGGGCAGGTGGAGAGCATGATGTAGTAGCTGTGTGCTGCCAGGAGGCAGC
AAGCAGGGGCCCTTTTCTCCCAGTCAGTCATCTAGGCATCCTGGGCACACTTGTTATTTCTGGA
GACAAACTGGCCCACAGCCTGGAGCGGTAGCCCAGGGATACCCCACACCTCTGATCTCCTCACT
GACTTCCTTGAGGAAGGCGGTTGATGCCTTGTGCTGGGGCTCGCTGGGCTGGCACAGTGCTGGG
AGGCTTTAAGGATGAGGAGACTCCACCTTCAGGGAACTGTTGTCTCACCAGACTGAGGAACTGG
GTAAGAGGCGGAGCCCGGTAGAAAGAGCAGGAGGCTCTACAGCCTTAGCCAGCACTGGAGCCCC
AGAGGGCTTGACCTCTGACCTCTGTGCACCTAAGAAAGTTTCTTTGCTTCTTCTCCCCACCCAC
CCCCACCCCCTCTTGTTCCCTTCCATTTTCTCTCCGGAGAAGCGTGCTGTTTAGCTCAGGCCAA
AACATCTCAACAGAAGCCTGGCTTTGGGCACACTAGGTCTAAGAACTCAGGGTGGCAGTGCTTA
CTCATTTGCTCTGCCTTTCCTCCCCAAAAGTGGGCTCCCTAACCTACAGAAAACCCCTGTAGCC
CAAACCATGTCACCTGCATGCCTTATTCAGTGCTGGGGTACAGCCTAGGGTGTCCTTGGGCCAG
ATCCTCCACACAGCTTTAACTCAAAATATCTGCTGGCCCTAGTTGGGAGGGAATTGACTGAGGC
TGGAGTTAGGCTTGGTGGACCAGGAGCCCCATTCTTCCCTTGATTTGGAAGCCAAAAACCCAGC
TGGAACGCTGCTGCTGCACTGCTGACTCTCAGCTTCCCATGCTCAGGTCTGGGGACTTCTTGTC
CTGTGTGTGTCTATTTTAAGTTTTGTTCTCTGGGTACTGGGCATCTGCCTGTCTGAGCCCCAGG
CCCATCTGCCCACAACCCACTTTTCTCTGTCACTCTCTGGGCACCTCCTGAGATGGCCCCACAG
CTGAGCCCTGCTGGTTCTCAGAACAGGGCCAATGATTGTTCCCTCTGCCAGGAAATGCAGGGTC
AACTGCTAAAGAAGGTGGAGGCCCAGAGCTTGATGGTTTATCTTTTCCTTGTTTCTCCTTTGTT
TCTGTTTTAGAAATGAAGTGTGGGGGTTTAAATGGCATTTAAGCTGTACCCTGGAGCCGGCAGA
ACCAGGCAACGTTTTTTTCAAATAAAGGCTTATCATGCCCCCTA

hide sequence

RefSeq Acc Id:

XM_039112514 ⟹ XP_038968442

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	112,080,074 - 112,117,158 (-)	NCBI
mRatBN7.2	6	106,349,125 - 106,386,202 (-)	NCBI

RefSeq Acc Id:

XM_039112516 ⟹ XP_038968444

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	112,080,074 - 112,117,158 (-)	NCBI
mRatBN7.2	6	106,349,125 - 106,386,202 (-)	NCBI

RefSeq Acc Id:

XM_039112517 ⟹ XP_038968445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	112,080,074 - 112,105,473 (-)	NCBI
mRatBN7.2	6	106,349,125 - 106,374,516 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102187	(Get FASTA)	NCBI Sequence Viewer
	XP_006240454	(Get FASTA)	NCBI Sequence Viewer
	XP_008763037	(Get FASTA)	NCBI Sequence Viewer
	XP_017449718	(Get FASTA)	NCBI Sequence Viewer
	XP_038968442	(Get FASTA)	NCBI Sequence Viewer
	XP_038968444	(Get FASTA)	NCBI Sequence Viewer
	XP_038968445	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66827	(Get FASTA)	NCBI Sequence Viewer
	B2RYM0	(Get FASTA)	NCBI Sequence Viewer
	EDL81607	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014635
	ENSRNOP00000014635.3
	ENSRNOP00000072809
	ENSRNOP00000072809.2
	ENSRNOP00055034853
	ENSRNOP00060024974
	ENSRNOP00065035823

RefSeq Acc Id:

NP_001102187 ⟸ NM_001108717

- UniProtKB:

B2RYM0 (UniProtKB/Swiss-Prot), A6JE63 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MIASCLYYLLLPAARLFRFLSDAFFTCRKNALLAKSSSPQVEGNFAMAPRGPDQEECEGLLQQW
REEGWNQTLSTASEGPLADKGLAESSLALLMDNSGEQDTASEDKWSSRQLSDLRAADNLDQPFP
EVLGEEPLAEDEGPLWAAVPVQTGPQYADCAVLPMGAMAAEQWEEDPAMVAWSIAPEPMPQEET
SMWPFEGLEQLQPPPMEIPYHEILWREWEDFSTQPDAQGLEAGDGPQFQFTLMSYNILAQDLMQ
QSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKR
RTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNVGLVLLLQPLVPEGLGQVSVAPLC
VANTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGDLNSVPDSPLYNFIRDGEL
QYNGMPAWKVSGQEDFSHQLYQRKLQAPLWPSSLGITDCCQYVTSCHPKRSERLKYGRDFLLRF
RFCDLACQRPVGLVLMEGVTDTKPDRPAGWAECIFEEEISELEPVFPRTIGTIQHCLHLTSVYT
HFLPQHGRPEVTTMPLGLGMTVDYIFFSAESCENENRSDHRLDRDGTLKLLGRLSLLSEEILWA
ANGLPNPFYSSDHLCLLASFGMEVTAP

hide sequence

RefSeq Acc Id:	XP_006240454 ⟸ XM_006240392
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K3W9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMYPAGPGSGDSPEGFPEQPRLQSQIGNGAAQTLDAFFTCRKNALLAKSSSPQVEGNFAMAPRG PDQEECEGLLQQWREEGWNQTLSTASEGPLADKGLAESSLALLMDNSGEQDTASEDKWSSRQLS DLRAADNLDQPFPEVLGEEPLAEDEGPLWAAVPVQTGPQYADCAVLPMGAMAAEQWEEDPAMVA WSIAPEPMPQEETSMWPFEGLEQLQPPPMEIPYHEILWREWEDFSTQPDAQGLEAGDGPQFQFT LMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHYWEQLEP SLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNVGLVLLLQPLV PEGLGQVSVAPLCVANTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGDLNSVP DSPLYNFIRDGELQYNGMPAWKVSGQEDFSHQLYQRKLQAPLWPSSLGITDCCQYVTSCHPKRS ERLKYGRDFLLRFRFCDLACQRPVGLVLMEGVTDTKPDRPAGWAECIFEEEISELEPVFPRTIG TIQHCLHLTSVYTHFLPQHGRPEVTTMPLGLGMTVDYIFFSAESCENENRSDHRLDRDGTLKLL GRLSLLSEEILWAANGLPNPFYSSDHLCLLASFGMEVTAP hide sequence

RefSeq Acc Id:

XP_008763037 ⟸ XM_008764815

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAPRGPDQEECEGLLQQWREEGWNQTLSTASEGPLADKGLAESSLALLMDNSGEQDTASEDKWS
SRQLSDLRAADNLDQPFPEVLGEEPLAEDEGPLWAAVPVQTGPQYADCAVLPMGAMAAEQWEED
PAMVAWSIAPEPMPQEETSMWPFEGLEQLQPPPMEIPYHEILWREWEDFSTQPDAQGLEAGDGP
QFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHYW
EQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNVGLVLL
LQPLVPEGLGQVSVAPLCVANTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGD
LNSVPDSPLYNFIRDGELQYNGMPAWKVSGQEDFSHQLYQRKLQAPLWPSSLGITDCCQYVTSC
HPKRSERLKYGRDFLLRFRFCDLACQRPVGLVLMEGVTDTKPDRPAGWAECIFEEEISELEPVF
PRTIGTIQHCLHLTSVYTHFLPQHGRPEVTTMPLGLGMTVDYIFFSAESCENENRSDHRLDRDG
TLKLLGRLSLLSEEILWAANGLPNPFYSSDHLCLLASFGMEVTAP

hide sequence

RefSeq Acc Id:	XP_017449718 ⟸ XM_017594229
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K3W9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTVSHHFVSIMMYPAGPGSGDSPEGFPEQPRLQSQIGNGAAQTLDAFFTCRKNALLAKSSSPQV EGNFAMAPRGPDQEECEGLLQQWREEGWNQTLSTASEGPLADKGLAESSLALLMDNSGEQDTAS EDKWSSRQLSDLRAADNLDQPFPEVLGEEPLAEDEGPLWAAVPVQTGPQYADCAVLPMGAMAAE QWEEDPAMVAWSIAPEPMPQEETSMWPFEGLEQLQPPPMEIPYHEILWREWEDFSTQPDAQGLE AGDGPQFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQ EDHYWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNV GLVLLLQPLVPEGLGQVSVAPLCVANTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPI ILCGDLNSVPDSPLYNFIRDGELQYNGMPAWKVSGQEDFSHQLYQRKLQAPLWPSSLGITDCCQ YVTSCHPKRSERLKYGRDFLLRFRFCDLACQRPVGLVLMEGVTDTKPDRPAGWAECIFEEEISE LEPVFPRTIGTIQHCLHLTSVYTHFLPQHGRPEVTTMPLGLGMTVDYIFFSAESCENENRSDHR LDRDGTLKLLGRLSLLSEEILWAANGLPNPFYSSDHLCLLASFGMEVTAP hide sequence

RefSeq Acc Id:

ENSRNOP00000014635 ⟸ ENSRNOT00000014635

RefSeq Acc Id:

ENSRNOP00000072809 ⟸ ENSRNOT00000078265

RefSeq Acc Id:	XP_038968442 ⟸ XM_039112514
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K3W9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968444 ⟸ XM_039112516
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038968445 ⟸ XM_039112517
- Peptide Label:	isoform X3

Protein Domains

Endonuclease/exonuclease/phosphatase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2RYM0-F1-model_v2	AlphaFold	B2RYM0	1-667	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694748

Promoter ID:

EPDNEW_R5272

Type:

single initiation site

Name:

Angel1_2

Description:

angel homolog 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R5273

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	110,669,913 - 110,669,973	EPDNEW

RGD ID:

13694755

Promoter ID:

EPDNEW_R5273

Type:

multiple initiation site

Name:

Angel1_1

Description:

angel homolog 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R5272

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	110,681,355 - 110,681,415	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306238	AgrOrtholog
BioCyc Gene	G2FUF-36754	BioCyc
Ensembl Genes	ENSRNOG00000010567	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055024756	UniProtKB/Swiss-Prot
	ENSRNOG00060017936	UniProtKB/Swiss-Prot
	ENSRNOG00065025293	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000014635	ENTREZGENE
	ENSRNOT00000014635.5	UniProtKB/Swiss-Prot
	ENSRNOT00000078265.2	UniProtKB/TrEMBL
	ENSRNOT00055042689	UniProtKB/Swiss-Prot
	ENSRNOT00060030846	UniProtKB/Swiss-Prot
	ENSRNOT00065043641	UniProtKB/Swiss-Prot
Gene3D-CATH	3.60.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8372804	IMAGE-MGC_LOAD
InterPro	Endo/exonu/phosph_ase_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Endo/exonuclease/phosphatase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:362765	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:188710	IMAGE-MGC_LOAD
NCBI Gene	362765	ENTREZGENE
PANTHER	CARBON CATABOLITE REPRESSOR PROTEIN 4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN ANGEL HOMOLOG 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Exo_endo_phos	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Angel1	PhenoGen
RatGTEx	ENSRNOG00000010567	RatGTEx
	ENSRNOG00055024756	RatGTEx
	ENSRNOG00060017936	RatGTEx
	ENSRNOG00065025293	RatGTEx
Superfamily-SCOP	SSF56219	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K3W9	ENTREZGENE, UniProtKB/TrEMBL
	A6JE63	ENTREZGENE, UniProtKB/TrEMBL
	ANGE1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-06	Angel1	angel homolog 1	Angel1	angel homolog 1 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Angel1	angel homolog 1 (Drosophila)	Angel1_predicted	angel homolog 1 (Drosophila) (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Angel1_predicted	angel homolog 1 (Drosophila) (predicted)	RGD1306238_predicted	similar to RIKEN cDNA 1110030H02 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1306238_predicted	similar to RIKEN cDNA 1110030H02 (predicted)	LOC362765_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC362765_predicted	similar to RIKEN cDNA 1110030H02 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar