Angel1 (angel homolog 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Angel1 (angel homolog 1) Heterocephalus glaber
Analyze
Symbol: Angel1
Name: angel homolog 1
RGD ID: 18931676
Description: ENCODES a protein that exhibits eukaryotic initiation factor 4E binding (ortholog); protein domain specific binding (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN cis-Golgi network (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein angel homolog 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473425,007,642 - 25,030,836 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473424,911,217 - 25,046,138 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Angel1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473425,007,642 - 25,030,836 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473424,911,217 - 25,046,138 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ANGEL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381476,786,009 - 76,812,882 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1476,781,733 - 76,826,246 (-)EnsemblGRCh38hg38GRCh38
GRCh371477,252,352 - 77,279,225 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361476,323,339 - 76,348,983 (-)NCBINCBI36Build 36hg18NCBI36
Build 341476,323,338 - 76,348,983NCBI
Celera1457,292,199 - 57,317,888 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1457,422,206 - 57,447,959 (-)NCBIHuRef
CHM1_11477,191,408 - 77,217,104 (-)NCBICHM1_1
T2T-CHM13v2.01470,995,319 - 71,022,310 (-)NCBIT2T-CHM13v2.0
Angel1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391286,740,185 - 86,781,075 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1286,747,276 - 86,780,995 (-)EnsemblGRCm39 Ensembl
GRCm381286,699,719 - 86,734,303 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1286,700,502 - 86,726,460 (-)EnsemblGRCm38mm10GRCm38
MGSCv371288,041,452 - 88,067,410 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361287,589,605 - 87,625,425 (-)NCBIMGSCv36mm8
Celera1288,162,457 - 88,188,512 (-)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1240.86NCBI
Angel1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,080,074 - 112,117,178 (-)NCBIGRCr8
mRatBN7.26106,349,125 - 106,386,202 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6106,349,126 - 106,386,209 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6106,517,892 - 106,543,458 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06106,816,745 - 106,842,312 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06106,186,400 - 106,211,968 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06110,644,327 - 110,681,397 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6110,644,267 - 110,681,408 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06119,941,589 - 119,978,472 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46110,825,006 - 110,850,916 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16110,828,535 - 110,854,396 (-)NCBI
Celera6104,171,806 - 104,197,441 (-)NCBICelera
Cytogenetic Map6q31NCBI
Angel1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955438776,213 - 797,948 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955438776,213 - 805,020 (-)NCBIChiLan1.0ChiLan1.0
ANGEL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21577,871,161 - 77,910,190 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11477,088,826 - 77,126,697 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01457,340,811 - 57,368,871 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11476,548,480 - 76,597,123 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1476,550,463 - 76,573,624 (-)Ensemblpanpan1.1panPan2
ANGEL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1849,655,243 - 49,696,897 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl849,656,854 - 49,750,707 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha849,339,104 - 49,385,267 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0849,882,024 - 49,928,223 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl849,881,238 - 49,927,864 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1849,551,960 - 49,593,799 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0849,575,137 - 49,616,791 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0849,973,262 - 50,014,928 (-)NCBIUU_Cfam_GSD_1.0
Angel1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864026,343,706 - 26,369,599 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364885,698,905 - 5,718,114 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364885,699,365 - 5,717,984 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANGEL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl799,930,684 - 99,959,417 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1799,929,401 - 99,959,441 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27105,991,733 - 105,999,661 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANGEL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12454,051,349 - 54,102,050 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2454,048,757 - 54,079,273 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605342,250,665 - 42,291,308 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004837144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004837146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021245961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021245971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021245974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021245977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021245984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021245995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002389879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002389882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002389884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01009769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000027066   ⟹   ENSHGLP00000026827
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473425,007,642 - 25,030,836 (+)Ensembl
RefSeq Acc Id: XM_004837144   ⟹   XP_004837201
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473425,007,668 - 25,030,836 (+)NCBI
RefSeq Acc Id: XM_004837146   ⟹   XP_004837203
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473425,007,708 - 25,030,836 (+)NCBI
RefSeq Acc Id: XM_021245961   ⟹   XP_021101620
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473424,911,220 - 25,030,836 (+)NCBI
RefSeq Acc Id: XM_021245971   ⟹   XP_021101630
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473424,912,172 - 25,030,836 (+)NCBI
RefSeq Acc Id: XM_021245974   ⟹   XP_021101633
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473424,926,388 - 25,030,836 (+)NCBI
RefSeq Acc Id: XM_021245977   ⟹   XP_021101636
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473424,981,044 - 25,030,836 (+)NCBI
RefSeq Acc Id: XM_021245984   ⟹   XP_021101643
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473424,948,356 - 25,030,836 (+)NCBI
RefSeq Acc Id: XM_021245995   ⟹   XP_021101654
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473425,000,700 - 25,030,836 (+)NCBI
RefSeq Acc Id: XM_021246005   ⟹   XP_021101664
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473424,911,217 - 25,028,118 (+)NCBI
RefSeq Acc Id: XM_021246009   ⟹   XP_021101668
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473425,007,973 - 25,030,836 (+)NCBI
RefSeq Acc Id: XM_021246014   ⟹   XP_021101673
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473425,007,822 - 25,030,836 (+)NCBI
RefSeq Acc Id: XM_021246019   ⟹   XP_021101678
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473424,911,218 - 25,043,613 (+)NCBI
RefSeq Acc Id: XM_021246026   ⟹   XP_021101685
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473424,911,218 - 25,046,138 (+)NCBI
RefSeq Acc Id: XM_021246034   ⟹   XP_021101693
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473424,911,218 - 25,029,005 (+)NCBI
RefSeq Acc Id: XR_002389879
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473424,911,218 - 25,030,836 (+)NCBI
RefSeq Acc Id: XR_002389882
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473424,911,217 - 25,028,290 (+)NCBI
RefSeq Acc Id: XR_002389884
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473424,911,217 - 25,028,338 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021101664   ⟸   XM_021246005
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021101685   ⟸   XM_021246026
- Peptide Label: isoform X9
RefSeq Acc Id: XP_021101678   ⟸   XM_021246019
- Peptide Label: isoform X8
RefSeq Acc Id: XP_021101693   ⟸   XM_021246034
- Peptide Label: isoform X10
RefSeq Acc Id: XP_021101620   ⟸   XM_021245961
- Peptide Label: isoform X1
- UniProtKB: G5B686 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101630   ⟸   XM_021245971
- Peptide Label: isoform X1
- UniProtKB: G5B686 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101633   ⟸   XM_021245974
- Peptide Label: isoform X1
- UniProtKB: G5B686 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101643   ⟸   XM_021245984
- Peptide Label: isoform X3
- UniProtKB: G5B686 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101636   ⟸   XM_021245977
- Peptide Label: isoform X2
- UniProtKB: G5B686 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101654   ⟸   XM_021245995
- Peptide Label: isoform X4
- UniProtKB: G5B686 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004837201   ⟸   XM_004837144
- Peptide Label: isoform X5
- UniProtKB: G5B686 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004837203   ⟸   XM_004837146
- Peptide Label: isoform X7
- UniProtKB: G5B686 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101673   ⟸   XM_021246014
- Peptide Label: isoform X7
- UniProtKB: G5B686 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101668   ⟸   XM_021246009
- Peptide Label: isoform X7
- UniProtKB: G5B686 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000026827   ⟸   ENSHGLT00000027066


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019080 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027066 ENTREZGENE
Gene3D-CATH Endonuclease/exonuclease/phosphatase UniProtKB/TrEMBL
InterPro Endo/exonu/phosph_ase_sf UniProtKB/TrEMBL
  Endo/exonuclease/phosphatase UniProtKB/TrEMBL
NCBI Gene Angel1 ENTREZGENE
PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 UniProtKB/TrEMBL
  PROTEIN ANGEL HOMOLOG 1 UniProtKB/TrEMBL
Pfam Exo_endo_phos UniProtKB/TrEMBL
Superfamily-SCOP DNase I-like UniProtKB/TrEMBL
UniProt G5B686 ENTREZGENE, UniProtKB/TrEMBL