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Gene: C2h5orf34 (similar to human chromosome 5 open reading frame 34) Rattus norvegicus

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Symbol:

C2h5orf34

Name:

similar to human chromosome 5 open reading frame 34

RGD ID:

1306227

Description:

Orthologous to human C5orf34 (chromosome 5 open reading frame 34); INTERACTS WITH 17beta-estradiol; acrylamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC310377; LOC310377; RGD1306227; similar to 4833420G17Rik protein; similar to humqan chromosome 5 open reading frame 34; uncharacterized protein C5orf34 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	53,287,353 - 53,309,804 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	53,287,957 - 53,309,806 (+)	Ensembl				GRCr8
mRatBN7.2	2	51,553,223 - 51,577,090 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	51,555,432 - 51,577,085 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	58,674,322 - 58,696,030 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	56,733,033 - 56,754,742 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	51,667,187 - 51,688,882 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	52,333,396 - 52,355,044 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	52,333,396 - 52,355,042 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	70,696,592 - 70,718,964 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	51,642,381 - 51,664,029 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	47,210,389 - 47,232,051 (+)	NCBI		Celera
RGSC_v3.1	2	51,570,613 - 51,592,260 (+)	NCBI
Cytogenetic Map	2	q15	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-nitropyrene (ISO)

17beta-estradiol (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

atrazine (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

cadmium dichloride (ISO)

calcitriol (ISO)

cannabidiol (ISO)

cisplatin (ISO)

clothianidin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

dioxygen (ISO)

endosulfan (EXP)

Enterolactone (ISO)

ethyl methanesulfonate (ISO)

gentamycin (EXP)

leflunomide (ISO)

lucanthone (ISO)

methyl methanesulfonate (ISO)

ochratoxin A (EXP)

okadaic acid (ISO)

paracetamol (ISO)

quercetin (ISO)

resorcinol (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

sunitinib (ISO)

testosterone (ISO)

thioacetamide (EXP)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
2.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

C2h5orf34
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	53,287,353 - 53,309,804 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	53,287,957 - 53,309,806 (+)	Ensembl				GRCr8
mRatBN7.2	2	51,553,223 - 51,577,090 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	51,555,432 - 51,577,085 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	58,674,322 - 58,696,030 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	56,733,033 - 56,754,742 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	51,667,187 - 51,688,882 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	52,333,396 - 52,355,044 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	52,333,396 - 52,355,042 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	70,696,592 - 70,718,964 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	51,642,381 - 51,664,029 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	47,210,389 - 47,232,051 (+)	NCBI		Celera
RGSC_v3.1	2	51,570,613 - 51,592,260 (+)	NCBI
Cytogenetic Map	2	q15	NCBI

C5orf34
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	43,486,709 - 43,515,148 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	43,486,709 - 43,515,148 (-)	Ensembl			hg38	GRCh38
GRCh37	5	43,486,811 - 43,515,250 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	43,522,567 - 43,550,944 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	43,377,936 - 43,406,275 (-)	NCBI		Celera
Cytogenetic Map	5	p12	NCBI
HuRef	5	43,437,926 - 43,466,376 (-)	NCBI		HuRef
CHM1_1	5	43,488,068 - 43,516,540 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	43,739,532 - 43,767,935 (-)	NCBI		T2T-CHM13v2.0

4833420G17Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	119,599,295 - 119,622,656 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	119,599,304 - 119,622,656 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	119,462,015 - 119,486,120 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	119,462,768 - 119,486,120 (+)	Ensembl			mm10	GRCm38
MGSCv37	13	120,251,566 - 120,274,924 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	120,581,645 - 120,604,990 (+)	NCBI		MGSCv36	mm8
Celera	13	123,916,321 - 123,941,603 (+)	NCBI		Celera
Cytogenetic Map	13	D2.3	NCBI
cM Map	13	67.24	NCBI

CUNH5orf34
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955446	18,841,517 - 18,862,814 (+)	Ensembl
ChiLan1.0	NW_004955446	18,837,488 - 18,862,396 (+)	NCBI	ChiLan1.0	ChiLan1.0

C4H5orf34
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	66,808,521 - 66,842,673 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	64,962,147 - 64,991,977 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	66,856,042 - 66,886,158 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	71,907,790 - 71,935,955 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	71,907,790 - 71,935,955 (+)	Ensembl			panPan2	panpan1.1

C4H5orf34
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	66,496,210 - 66,538,317 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	66,461,257 - 66,528,051 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	66,256,967 - 66,290,673 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	66,988,663 - 67,022,387 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	66,988,611 - 67,020,514 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	66,746,764 - 66,780,465 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	66,877,423 - 66,911,117 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	67,412,978 - 67,446,684 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH5orf34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	209,800,959 - 209,827,694 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	18,737,628 - 18,764,004 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	18,737,455 - 18,764,177 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C16H5orf34
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	28,058,264 - 28,094,452 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	28,060,297 - 28,094,206 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	29,633,610 - 29,654,205 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C4H5orf34
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	42,234,849 - 42,295,683 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	42,273,956 - 42,295,320 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666071	32,740,349 - 32,768,356 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH5orf34
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624759	11,700,413 - 11,720,868 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624759	11,696,985 - 11,721,000 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C3H5orf34
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	177,293,017 - 177,314,774 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C2h5orf34
171 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	35
Count of miRNA genes:	26
Interacting mature miRNAs:	35
Transcripts:	ENSRNOT00000046174
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	13325041	58325041	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	24117813	69117813	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	36750344	81750344	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300160	Hrtrt3	Heart rate QTL 3	3.62		heart pumping trait (VT:2000009)	absolute change in heart rate (CMO:0000534)	2	35614083	53462005	Rat
1579916	Bp270	Blood pressure QTL 270		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	16051883	61051883	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	22038044	67038044	Rat
731166	Mamtr2	Mammary tumor resistance QTL 2		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	54623581	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	40306867	124537199	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	28889991	73889991	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	41801363	104744824	Rat
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	14368707	59368707	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
631208	Bw1	Body weight QTL1	5.09		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	2	44904355	85286097	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1300155	Bp174	Blood pressure QTL 174	4.09		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	44537979	112567334	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	83465677	Rat
1359034	Bp274	Blood pressure QTL 274			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	51266859	96266859	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
2306903	Bp336	Blood pressure QTL 336		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	38426449	111295694	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	18227137	63227137	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	36868643	81868643	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	44904355	89904355	Rat
1582246	Cm60	Cardiac mass QTL 60	5.8		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	33269996	78269996	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	73652666	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC098186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000046174 ⟹ ENSRNOP00000050757

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	53,287,957 - 53,309,806 (+)	Ensembl
mRatBN7.2 Ensembl	2	51,555,432 - 51,577,085 (+)	Ensembl
Rnor_6.0 Ensembl	2	52,333,396 - 52,355,042 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000136824 ⟹ ENSRNOP00000112497

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	53,287,957 - 53,306,889 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000142671 ⟹ ENSRNOP00000112489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	53,287,957 - 53,309,806 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000148519 ⟹ ENSRNOP00000102227

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	53,289,336 - 53,309,806 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000163295 ⟹ ENSRNOP00000107742

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	53,290,127 - 53,309,806 (+)	Ensembl

RefSeq Acc Id:

NM_001014037 ⟹ NP_001014059

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	53,288,156 - 53,309,804 (+)	NCBI
mRatBN7.2	2	51,555,432 - 51,577,087 (+)	NCBI
Rnor_6.0	2	52,333,396 - 52,355,044 (+)	NCBI
Rnor_5.0	2	70,696,592 - 70,718,964 (+)	NCBI
RGSC_v3.4	2	51,642,381 - 51,664,029 (+)	RGD
Celera	2	47,210,389 - 47,232,051 (+)	RGD

Sequence:

show sequence

CGGTAGTTAATATATTACTTATTGAAGGAACCGTGGCGAAGCGGTCGCAGACAGTACAGTTCCT
GCCACTTGAGCAAAATAGAGGTCGGTCAGAGGCTGTGGTTGCCCTCCTTTCGAAGTGGAAAACA
ACTTCGCAGCCCACAACTGCCGTCCCTGCTGAGAAGTGTGGCGTACCCAGGCATGGGAACGGCA
GCTGAAGTGCGAATGGTACTGTACGAGGATGACTCAGTCCAAGTGAACTATGCTGATGGTTCCA
CACTGCAGCTCTCTCCTTGCGGCTCTGAATTTCTCTTTGAAAAGGCACCTCCTCCTTCCACACA
TCCTTTAGAACAACCAGAGAGGATTCGTCAACGGACACACTTTGTTATTAGCAACTACCGAGAG
CAACTACAGCGAGCCCTAGATTTTCGAAACTCTTCAGCTACTTGCCCTTTTTTATCTGAAAGCA
TCATACCTTCTGAAAGAAAAAAGCGTGTCTTCATTGATTTCTCGGAAGTAGAGTGGCCCAGCCC
TGACAGAGACGACTGCATCACGTACTCGGAGAGTGGTATAGTGAAGATAACGTCGCTGGATGGA
CACGCGTACCTTTGCCTGCCCAGATCTCAGCATGAATTTACAGTGCATTTTTTGTGTAAAGTGA
GCCAGAAGCCAGATTCATCTGTGATGCCACCCGAAACGAAGAATCGGGTCCCAAAAGAAGAACT
AGTTGGGAAGACCAGAAACGTCTGCAGAAGTGGACGTTTATCAGGACAAAGGTTAAGGAATAAA
GAAAACGAGCCTCCTCGCCAGCTCTTGACATCTAAAAACGCTTCAGCGAACATACATTGCGTGA
GTGAAACTGAGGGGAGGGAGGAGCTGCCTTCCCCTGGCACAAAGCGCAGATATGTCCACGTGTG
GGTGAAGCAGTCTTGGTCTGCTGCCTCCTGTCCAGAGGAGTGGAAATACCCTCTGTCTTTGGGA
CTTCGTTTCTATAACAAAGTTCCTGCCGCATCTGCAGCTGATGCAGAAGTCCCTGTGAGTGGCA
TTGTGACTTCCGACAATCCTGAAGAGAGAGGAACAGGGGTTTCTGTCCTTCCCAGGGCCTTGTT
ACTCAGCTGCTCTGCCCCACACATGCACAGGTGGAACTTCTGTGACTCACTTCTACAGAGACAG
TCTGATGCAGAAGAGTATTCCTATCCTGAGCTTATAAAGGTGGTGTGGTATAAGGGTGTTACAT
ACAGGCTCACCCATAAAAATGTAAACTCAATAGAGATTTTTCCTGGCGATGGATCGGTTTTCAA
GTCAGAAGGAACTCATTTTGGCAACTATTTCACATATTCAAGCCAAGACAACTCAGGAAAGAGA
GAAGAGAAAACTTATTCTGTAAATAACCTACCTCCAGACAGACCAGGAAATCTCTACTCTGTCC
GTTCCCTGATTAAACAGGCAACCAGAATTCTTCAACATTGTGCCAAGATAAGGCTTTCACTAAG
CCACAACTACCGTGTATGCTGCTGGAGAATGGCACCTGGAGTAAATGTTAGCAGTATCCTGCCC
GTGCTTCTGAAGGAATCCCTCATCCCAGGCGTGGGGAGATTCCTCGCCTACTCCGATGACAAAG
TCCATGCTGTCTTTTTGGATGGCGTCACACTAACGCTGAATTGGGATCTTAGCTCCTCTGCTGA
AAAGACACAAGTAGATCAAGGTCTCCGCTTACGCTGGTGCAGATTAACTTTTCCTGATGGACAG
GATCAGTTAATTCAAACCGAGCACCCTGGAGTGTATGAAAGATATGTGACTTCAGTAGTAACAT
GGTGCAGAAGACTAACGCAGACTAGTTCAAGACACGTGTCCCCACGTCTCTCACCTGTTCCCGA
GGAAAATTGGTCTGTTGCTTCTGAGCTTGAGAAAATACAGAAATTTAACTGGCTGCTGGAAAAC
AGTGGTGTCCTCAACCTGACTTCTGGCAAGAAAAATGAACAGTGTTCTTCTGATCACTGTAAAC
CAGGATCTTCAGAAACCTTGCCAGAAGCAACTAATGAAGAGAGTGTATCAGTAGCATTGAAAAG
AACTTCTGAAGTCCTTCAGGATATTGACTATCTTCTGTCACTCACTAGAAAGTGAAAAATGGCA
GTATTACAAAATCTTAAGGATGTTTCAAATTACTAGTATGGAATTGCTAACCCAAGAAATTGCA
AATGTTACTTCTATAGAATGATCGTTCAGAACTGATTTCACTTTGATTGGATTTTGCTCAGCTT
GTAAATTTTAGTGTTCGTGTGTATATGCACTTTTTAAAATAAAAAAAATTGAAATTTTGAAAAA
AAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039102254 ⟹ XP_038958182

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	53,287,353 - 53,307,586 (+)	NCBI
mRatBN7.2	2	51,553,223 - 51,573,606 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014059	(Get FASTA)	NCBI Sequence Viewer
	XP_038958182	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH78991	(Get FASTA)	NCBI Sequence Viewer
	EDM10414	(Get FASTA)	NCBI Sequence Viewer
	EDM10415	(Get FASTA)	NCBI Sequence Viewer
	EDM10416	(Get FASTA)	NCBI Sequence Viewer
	EDM10417	(Get FASTA)	NCBI Sequence Viewer
	EDM10418	(Get FASTA)	NCBI Sequence Viewer
	EDM10419	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000050757
	ENSRNOP00000050757.2
	ENSRNOP00000112497
GenBank Protein	Q6AYM1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014059 ⟸ NM_001014037

- UniProtKB:

Q6AYM1 (UniProtKB/Swiss-Prot), A6I5V6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGTAAEVRMVLYEDDSVQVNYADGSTLQLSPCGSEFLFEKAPPPSTHPLEQPERIRQRTHFVIS
NYREQLQRALDFRNSSATCPFLSESIIPSERKKRVFIDFSEVEWPSPDRDDCITYSESGIVKIT
SLDGHAYLCLPRSQHEFTVHFLCKVSQKPDSSVMPPETKNRVPKEELVGKTRNVCRSGRLSGQR
LRNKENEPPRQLLTSKNASANIHCVSETEGREELPSPGTKRRYVHVWVKQSWSAASCPEEWKYP
LSLGLRFYNKVPAASAADAEVPVSGIVTSDNPEERGTGVSVLPRALLLSCSAPHMHRWNFCDSL
LQRQSDAEEYSYPELIKVVWYKGVTYRLTHKNVNSIEIFPGDGSVFKSEGTHFGNYFTYSSQDN
SGKREEKTYSVNNLPPDRPGNLYSVRSLIKQATRILQHCAKIRLSLSHNYRVCCWRMAPGVNVS
SILPVLLKESLIPGVGRFLAYSDDKVHAVFLDGVTLTLNWDLSSSAEKTQVDQGLRLRWCRLTF
PDGQDQLIQTEHPGVYERYVTSVVTWCRRLTQTSSRHVSPRLSPVPEENWSVASELEKIQKFNW
LLENSGVLNLTSGKKNEQCSSDHCKPGSSETLPEATNEESVSVALKRTSEVLQDIDYLLSLTRK

hide sequence

Ensembl Acc Id:

ENSRNOP00000050757 ⟸ ENSRNOT00000046174

RefSeq Acc Id:	XP_038958182 ⟸ XM_039102254
- Peptide Label:	isoform X1
- UniProtKB:	A6I5V6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000107742 ⟸ ENSRNOT00000163295

Ensembl Acc Id:

ENSRNOP00000112489 ⟸ ENSRNOT00000142671

Ensembl Acc Id:

ENSRNOP00000102227 ⟸ ENSRNOT00000148519

Ensembl Acc Id:

ENSRNOP00000112497 ⟸ ENSRNOT00000136824

Protein Domains

C5orf34-like C5orf34-like C-terminal C5orf34-like N-terminal C5orf34-like second

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYM1-F1-model_v2	AlphaFold	Q6AYM1	1-640	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306227	AgrOrtholog
BioCyc Gene	G2FUF-54288	BioCyc
Ensembl Genes	ENSRNOG00000017581	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000046174	ENTREZGENE
	ENSRNOT00000046174.3	UniProtKB/Swiss-Prot
	ENSRNOT00000136824	ENTREZGENE
IMAGE_CLONE	IMAGE:7112582	IMAGE-MGC_LOAD
InterPro	C5orf34-like	UniProtKB/Swiss-Prot
	C5orf34-like_2nd	UniProtKB/Swiss-Prot
	C5orf34-like_dom	UniProtKB/Swiss-Prot
	DUF4520	UniProtKB/Swiss-Prot
	DUF4524	UniProtKB/Swiss-Prot
KEGG Report	rno:310377	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93889	IMAGE-MGC_LOAD
NCBI Gene	310377	ENTREZGENE
PANTHER	ZGC:153352	UniProtKB/Swiss-Prot
	ZGC:153352	UniProtKB/Swiss-Prot
Pfam	DUF4520	UniProtKB/Swiss-Prot
	DUF4524	UniProtKB/Swiss-Prot
	DUF4524_C	UniProtKB/Swiss-Prot
	Polo_box_4	UniProtKB/Swiss-Prot
PhenoGen	C2h5orf34	PhenoGen
RatGTEx	ENSRNOG00000017581	RatGTEx
UniProt	A0ABK0LMF0_RAT	UniProtKB/TrEMBL
	A0ABK0LZB1_RAT	UniProtKB/TrEMBL
	A0ABK0M2I9_RAT	UniProtKB/TrEMBL
	A0ABK0MAW6_RAT	UniProtKB/TrEMBL
	A6I5V6	ENTREZGENE, UniProtKB/TrEMBL
	A6I5W0_RAT	UniProtKB/TrEMBL
	CE034_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-07-21	C2h5orf34	similar to human chromosome 5 open reading frame 34	C2h5orf34	similar to humqan chromosome 5 open reading frame 34	Name changed	629549	APPROVED
2022-07-21	C2h5orf34	similar to humqan chromosome 5 open reading frame 34	RGD1306227	similar to 4833420G17Rik protein	Name and Symbol changed	629549	APPROVED
2005-12-06	RGD1306227	similar to 4833420G17Rik protein	RGD1306227_predicted	similar to 4833420G17Rik protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306227_predicted	similar to 4833420G17Rik protein (predicted)	LOC310377_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC310377_predicted	similar to 4833420G17Rik protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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