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Gene: Arhgap29 (Rho GTPase activating protein 29) Rattus norvegicus

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Symbol:

Arhgap29

Name:

Rho GTPase activating protein 29

RGD ID:

1306185

Description:

Predicted to enable GTPase activator activity and PDZ domain binding activity. Predicted to be involved in negative regulation of small GTPase mediated signal transduction. Predicted to be located in cytosol. Predicted to be part of protein-containing complex. Predicted to be active in cytoplasm. Orthologous to human ARHGAP29 (Rho GTPase activating protein 29); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

B130017i01rik; LOC103695137; LOC310833; MGC95332; PTPL1-associated RhoGAP 1; RGD1306185; rho GTPase-activating protein 29; rho-type GTPase-activating protein 29; similar to Parg1-pending protein; uncharacterized LOC103695137

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARHGAP29 (Rho GTPase activating protein 29)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Arhgap29 (Rho GTPase activating protein 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arhgap29 (Rho GTPase activating protein 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARHGAP29 (Rho GTPase activating protein 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARHGAP29 (Rho GTPase activating protein 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arhgap29 (Rho GTPase activating protein 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARHGAP29 (Rho GTPase activating protein 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARHGAP29 (Rho GTPase activating protein 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arhgap29 (Rho GTPase activating protein 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Arhgap29 (Rho GTPase activating protein 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ARHGAP22 (Rho GTPase activating protein 22)	HGNC	PhylomeDB
Homo sapiens (human):	CCSER2 (coiled-coil serine rich protein 2)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Arhgap29 (Rho GTPase activating protein 29)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ARHGAP29 (Rho GTPase activating protein 29)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arhgap29b (Rho GTPase activating protein 29b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arhgap29b (Rho GTPase activating protein 29b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arhgap29a (Rho GTPase activating protein 29a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SAC7	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	SAC7	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	spv-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	BAG7	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	arhgap29	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	arhgap29	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	212,744,626 - 212,816,710 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	212,755,803 - 212,986,729 (+)	Ensembl				GRCr8
mRatBN7.2	2	210,060,036 - 210,132,572 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	210,071,199 - 210,132,028 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	217,744,272 - 217,803,881 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	215,652,016 - 215,711,628 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	210,493,986 - 210,553,600 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	225,552,075 - 225,613,349 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	225,552,148 - 225,613,359 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	243,589,204 - 243,650,478 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	218,619,428 - 218,679,087 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	202,500,963 - 202,560,640 (+)	NCBI		Celera
RGSC_v3.1	2	218,582,489 - 218,642,148 (+)	NCBI
Cytogenetic Map	2	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cleft lip (ISO)

COVID-19 (ISO)

EEC syndrome (ISS)

genetic disease (ISO)

isolated cleft palate (ISO)

mantle cell lymphoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

antirheumatic drug (ISO)

apigenin (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bilirubin IXalpha (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cobalt dichloride (ISO)

cocaine (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

flutamide (EXP)

fluvastatin (ISO)

folic acid (ISO)

fonofos (ISO)

fulvestrant (ISO)

glycidyl methacrylate (ISO)

glyphosate (ISO)

hyaluronic acid (EXP)

hydrogen peroxide (EXP,ISO)

indometacin (ISO)

ivermectin (ISO)

lead(0) (ISO)

leflunomide (ISO)

lithium chloride (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methamphetamine (ISO)

methylmercury chloride (ISO)

N-nitrosodiethylamine (ISO)

nickel atom (ISO)

okadaic acid (ISO)

ozone (ISO)

parathion (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pinosylvin (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

raloxifene (ISO)

rofecoxib (ISO)

SB 431542 (ISO)

silicon dioxide (EXP,ISO)

simvastatin (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

terbufos (ISO)

tetrachloromethane (EXP)

thiram (ISO)

titanium dioxide (ISO)

torcetrapib (ISO)

trans-pinosylvin (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

triptonide (ISO)

troglitazone (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lipid transport (IEA)

negative regulation of small GTPase mediated signal transduction (IBA)

regulation of small GTPase mediated signal transduction (IEA)

signal transduction (IEA)

transmembrane transport (IEA)

visual perception (IEA)

Cellular Component

cytoplasm (IBA,ISO)

cytosol (IEA)

membrane (IEA)

plasma membrane (IEA)

protein-containing complex (ISO)

Molecular Function

ABC-type transporter activity (IEA)

ATP binding (IEA)

ATP hydrolysis activity (IEA)

GTPase activator activity (IBA,IEA)

metal ion binding (IEA)

PDZ domain binding (ISO)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:23209302	PMID:25468996	PMID:25931508	PMID:26780829

Genomics

Comparative Map Data

Arhgap29
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	212,744,626 - 212,816,710 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	212,755,803 - 212,986,729 (+)	Ensembl				GRCr8
mRatBN7.2	2	210,060,036 - 210,132,572 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	210,071,199 - 210,132,028 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	217,744,272 - 217,803,881 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	215,652,016 - 215,711,628 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	210,493,986 - 210,553,600 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	225,552,075 - 225,613,349 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	225,552,148 - 225,613,359 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	243,589,204 - 243,650,478 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	218,619,428 - 218,679,087 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	202,500,963 - 202,560,640 (+)	NCBI		Celera
RGSC_v3.1	2	218,582,489 - 218,642,148 (+)	NCBI
Cytogenetic Map	2	q42	NCBI

ARHGAP29
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	94,168,905 - 94,314,592 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	94,148,988 - 94,275,068 (-)	Ensembl			hg38	GRCh38
GRCh37	1	94,634,461 - 94,713,302 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	94,407,051 - 94,475,895 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	92,888,168 - 92,957,024 (-)	NCBI		Celera
Cytogenetic Map	1	p22.1-p21.3	NCBI
HuRef	1	92,755,306 - 92,824,255 (-)	NCBI		HuRef
CHM1_1	1	94,749,423 - 94,818,276 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	94,017,108 - 94,123,270 (-)	NCBI		T2T-CHM13v2.0

Arhgap29
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	121,746,752 - 121,810,326 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	121,746,190 - 121,810,402 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	121,953,113 - 122,016,677 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	121,952,541 - 122,016,753 (+)	Ensembl			mm10	GRCm38
MGSCv37	3	121,656,244 - 121,719,072 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	121,945,349 - 122,008,176 (+)	NCBI		MGSCv36	mm8
Celera	3	128,357,895 - 128,420,732 (+)	NCBI		Celera
Cytogenetic Map	3	G1	NCBI
cM Map	3	52.94	NCBI

Arhgap29
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	500,905 - 570,593 (+)	Ensembl
ChiLan1.0	NW_004955423	511,635 - 570,593 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARHGAP29
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	132,747,235 - 132,871,784 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	131,902,243 - 132,026,713 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	96,835,259 - 96,910,999 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	95,561,922 - 95,640,214 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	95,561,933 - 95,640,214 (-)	Ensembl			panPan2	panpan1.1

ARHGAP29
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	54,964,666 - 55,027,471 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	54,959,542 - 55,024,104 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	57,667,487 - 57,733,499 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	55,335,685 - 55,401,512 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	55,340,965 - 55,400,208 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	55,015,499 - 55,081,390 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	55,000,190 - 55,066,198 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	55,453,042 - 55,519,079 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Arhgap29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	104,007,473 - 104,061,026 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936537	4,886,938 - 4,940,465 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936537	4,886,924 - 4,940,466 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARHGAP29
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	123,085,922 - 123,158,928 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	123,082,137 - 123,158,275 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	134,727,733 - 134,803,812 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARHGAP29
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	39,031,352 - 39,096,227 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	39,036,500 - 39,097,068 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	78,954,580 - 79,029,594 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arhgap29
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624742	3,410,123 - 3,495,300 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Arhgap29
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	37,813,729 - 37,884,441 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Arhgap29
917 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	100
Count of miRNA genes:	42
Interacting mature miRNAs:	45
Transcripts:	ENSRNOT00000017076, ENSRNOT00000066486
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	163997722	225110681	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	169358774	214358774	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170656145	239614549	Rat
631563	Hcuc3	Hepatic copper content QTL 3	3.87		liver copper amount (VT:0003065)	liver copper weight to liver dry weight ratio (CMO:0001512)	2	212145502	231732847	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149957381	221199885	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1300126	Bp175	Blood pressure QTL 175	3.46		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	204795005	249795005	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
61458	Bp10	Blood pressure QTL 10	3.42		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	191709311	217961898	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	145807215	220931416	Rat
1302789	Stl26	Serum triglyceride level QTL 26	3.1	0.0035	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	206613059	226891081	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	122597372	215234002	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	205135267	250135267	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	196140964	251540988	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	205135267	250135267	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170652929	215652929	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	220931218	Rat
1581499	Esta2	Estrogen-induced thymic atrophy QTL 2			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	192287802	229609668	Rat
1359031	Bp275	Blood pressure QTL 275			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	188565047	233565047	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	184856304	229856304	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	184856304	229856304	Rat
631203	Gluco14	Glucose level QTL 14		0.0001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	2	209350500	221678003	Rat
1298083	Bp158	Blood pressure QTL 158	2.62		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	191709311	217961898	Rat
1357991	Ael2	Aortic elastin QTL 2	4.2	0.000071	aorta elastin amount (VT:0003905)	aortic elastin	2	169227906	214227906	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1331745	Bp203	Blood pressure QTL 203	4.377		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	192287802	221089121	Rat
61366	Iddm3	Insulin dependent diabetes mellitus QTL 3	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	192287802	237287802	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	184856304	229856304	Rat
1578671	Bmd10	Bone mineral density QTL 10	5.4		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	2	175931416	220931416	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	251712708	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	182024327	227024327	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	159440760	228950743	Rat
2301408	Kidm36	Kidney mass QTL 36		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	184482291	229482291	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	205135267	250135267	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	210956252	251712708	Rat
1598813	Memor9	Memory QTL 9	2.7		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	202029709	236904960	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
2298479	Eau5	Experimental allergic uveoretinitis QTL 5		0.0021	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	2	205135267	225627153	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
738013	Alc15	Alcohol consumption QTL 15	4.1	0.00022	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	2	186850607	231850607	Rat
61398	Bp50	Blood pressure QTL 50	4.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	192287802	237287802	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	223841096	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	182635347	227635347	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	175008837	220008837	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	203664411	248664411	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	184856304	229856304	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166372086	229820014	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	78	59	6	342	178	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001009405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC087167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017076 ⟹ ENSRNOP00000017076

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	210,083,406 - 210,132,028 (+)	Ensembl
Rnor_6.0 Ensembl	2	225,570,721 - 225,613,359 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000066486 ⟹ ENSRNOP00000062636

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	210,071,199 - 210,130,861 (+)	Ensembl
Rnor_6.0 Ensembl	2	225,552,148 - 225,611,638 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118092 ⟹ ENSRNOP00000092338

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	210,083,406 - 210,132,028 (+)	Ensembl

RefSeq Acc Id:

NM_001009405 ⟹ NP_001009405

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	212,755,885 - 212,815,544 (+)	NCBI
mRatBN7.2	2	210,071,199 - 210,130,862 (+)	NCBI
Rnor_6.0	2	225,552,148 - 225,611,639 (+)	NCBI
Rnor_5.0	2	243,589,204 - 243,650,478 (+)	NCBI
RGSC_v3.4	2	218,619,428 - 218,679,087 (+)	RGD
Celera	2	202,500,963 - 202,560,640 (+)	RGD

Sequence:

show sequence

CCGTGGGGGATGGGGACAGCGAGCTCCAGCCCGCTGAGGGGGCGGTGGCCGTGAGTGATAGGCG
TCCGGGTCGCGGGATGGAGCCCCACGGATTTCAGTTTTTCTGACTGTTAAATGAGAGGATGATT
GCTCACAAACAGAAAAAGGCAAAGAAAAAACGTGTTTGGGCATCAGGCCAACTCTCTGCCGCTA
TTACAACTTCTGAAATGGGGCTCAAGTCCGTAAGTTCCAACTCCATTTTTGATCCGGAATACAT
CAAGGAGCTGGTGAATGATATCAGGAAGTTCTCCCATGTGTTACTATATTTGAAAGAAGCTATT
CTTTCAGGTGTTGTAGCTGGCTCTTGATTTACAAATAAATGAACTCCTTAAAGAGAGAGATCTG
AGGCCTGAATCCATACTCTGCCTCGGACTGTTTTAAAGAAGTCATTCATATCCGTCTGGATGAA
CTTCTTCATGTTTTAAAGTCTGTAATGAGTAAGCATCAGAACCTCAATTCTGTAGACCTTCAGA
ACGCTGCAGAAACGCTCGCTTCGAAAGTGAAAGCTGTGAACTTTACAGAAGTTAATGACGAAAA
CAAAAACGATCTATTTCGAGAAGTCTTTTCCTCCATTGAAACTCTGGCATTTACCTTTGGAAAC
ATCCTCACAAACTTCCTTATGGGAGATGTAGGCAATGATTCGATACTACGACTGCCTATTTCTC
GAGAGAGTAAGTCCTTTGAAAACATTTCTATGGACTCAGTGGACTTACCTCATGAAAAAGGAAA
CTTTTCTCCTATAGAACTAGACAACTTGCTGTTAAAGAACTCTGACTCTATAGAACTGGCTTTG
TCTTATGCTAAAACTTGGTCAAAATATACCAAGAACATAGTGTCCTGGGTTGAAAAAAAGCTCA
ACTTGGAATTGGAGTCCACTAGAAATATTGTAAAATTGGCAGAGGCAACTAGATCTAGCATTGG
AATACAGGAGTTTATGCCTTTGCAGTCTCTCTTTACCAACGCTCTCCTTAATGATATACACAGC
AGTCACCTTTTACAACAGACAATCGCAGCTCTCCAAGCCAACAAATTCGTGCAGCCTCTACTTG
GGAGGAAGAATGAAATGGAGAAACAAAGGAAAGAAATAAAAGAACTTTGGAAGCAGCAGCAGAA
TAAATTGCTTGAAACAGAGACGGCTCTTAAAAAGGCAAAACTGTTATGCATGCAACGGCAAGAT
GAATACGAAAAGGCAAAATCATCCATGTTTCGAGCAGAAGAAGAGCAGCTGAGTTCAAGTGTTG
GACTGGGAAAAAATCTCAACAAACTACTAGAAAAAAGGCGGAGATTGGAAGAAGAGGCGCTTCA
AAAAGTAGAAGAAGCAAATGAGCACTACAAAGTCTGTGTAACAAATGTTGAAGAAAGACGGAAT
GATCTAGAAAATACGAAGCGAGAAATTTTAACACAGCTCCGGACACTTGTTTTCCAGTGTGACC
TTACACTTAAAGCTGTAACAGTTAACCTCTTTCATATGCAGCAGCTTCAGGCTGCTTCCCTCGC
CAACAGTTTACAGTCCCTCTGTGACAGTGCCAAACTCTATGATCCAGGTCAGGAGTATAGTGAA
TTCGTGAAGGCTACAAGCTCAAGTGAATTAGAAGAAAAGGTTGACGGGAATGTAAACAAACAAA
TAGCCAGCAGTCCGCAGACATCTGGATATGAACCTGCTGACTCTTTAGAGGATGTTGCACGCCT
CCCTGACAGCTGTCACAAACTTGAAGAGGACAGGTGTTCCAACAGTGCAGACATGACAGGTCCT
TCTTTCATAAGATCGTGGAAGTTCGGGATGTTTAGTGACTCTGAGAGTACTGGAGGAAGCAGTG
AGTCTAGATCTCTGGATTCAGAATCTATAAGTCCAGGAGACTTTCATCGGAAACTTCCACGAAC
TCCATCCAGTGGAACCATGTCTTCTGCTGATGATCTAGATGAACGAGAGCCACCATCACCTTCA
GAAGCTGGACCCAATTCCCTCGGAACATTTAAGAAAACTTTGATGTCGAAGGCAGCTCTCACTC
ACAAGTTTCGCAAGTTGAGATCCCCCACAAAGTGCAGGGATTGTGAAGGCATCGTAATGTTCCC
GGGCGTCGAGTGTGAAGAGTGTCTCCTTGTTTGTCACCGAAAGTGTTTGGAGAATTTAGTCATT
GTTTGTGGTCATCAAAAACTTCAGGGGAAAATGCACATATTTGGAGCAGAATTCATACAAGTTG
CAAAAAAGGAACCAGATGGCATCCCTTTCGTGCTAAAAATATGCGCCTCAGAAATTGAAAGTAG
AGCCTTGTGTCTCCAGGGAATTTATCGTGTTTGTGGAAACAAAATAAAAACTGAAAAACTGTGC
CAAGCTTTGGAAAATGGAATGCACTTAGTAGACATTTCAGAATTCAGTTCACATGACATCTGTG
ATGTCTTGAAATTATACCTGCGACAGCTTCCAGAACCATTTATTTTATTCAGATTGTACAAGGA
ATTTATAGACCTTGCAAAAGAGATACAACATGTAAATGAAGAACAAGAGGCAAAAAAAGATAGC
CCCGAAGACAAAAAGCACCCACACGTGAGCATAGAAATCAACCGCATCCTTCTGAGGAGCAAGG
ACCTGCTGCGACAGCTGCCAGCATCAAACTTCAACAGTCTTCATTACCTCATCGTCCATCTGAA
GCGGGTGGTGGACCATGCAGAAGAGAACAAGATGAATTCTAAGAACTTGGGGGTGATATTTGGC
CCAACGCTCATTAGGCCAAGGCCTACAACGGCTCCTGTCACCATCTCGTCCCTTGCTGAATATT
CCAGTCAGGCACGAGTAGTAGAGTTCCTCATTACTTACGCACAGAAGATCTTCGATGGGTCCCT
CCAGCCTCAAGCTGGTGTCATAGCTAACACAGGTGCTATTGCACCTCAAGTCGATCACGGGTGT
CATCCAAAACCGCTCTTATCACCAGATGAGAGAGACTCGGATCATTCTTTGAAACAACTATTCT
TCTCTTCAAAGGAAGATATCCGTACTATGGATTGTGAGAGCAAAACTTTTGAATTAACTACATC
ATTTGAAGAATCAGAACGCAAACAAAATGCATTGGGAAAATGTGATGCTCCCATCCTTGATAAC
AAAGTACATTTGCTTTTTGACCAAGAGCTTGAGTCAGCATCCCACAAGACGGAAGATACCTGTA
AAAGCCCTAAGCTGCTCCTTCTGAGATCTGATAGGGTAGCAAATAGTGTGCAGAGACCGACTCC
GAGGACCAGGCTAAGACCTGTAAGTCTGCCTGTGGATCGACTGCTGCTGCTTGCCGGGTCTCCT
ACTGAGAGAAGCAGCCGGAATACAGGAAACACAGACTCAGACAAGTTTGGCAAGAATGCCGCCT
TTGAAGGACTCCATAGAAAGGACAACTCAAATACTACTTGTTCCAAAGTTAATGGCTTTGACCA
GCAAAATGTACAGAAATCCTGGGACAAACAGAATGAGCGGAACAGTTTCACTGCCAAGACTACG
GTGATTATCCCCAGTGCCTATGCCGAGAAGGGATTGGCAGTGAGCACGGGGAACAACAGGGGCC
ATTCCAGTGGTGCTGCCCAGCCTAGTAAAGCACATGCAGACCCCGCCAGGTCTGCAAGAGACAC
GTCCGAGCACAGCTCCTCTGACTCCTGCCCTGTTGCTGCTGTCAGAGCACCCAGAACACTGCAG
CCCCAGCACTGGACAACGTTTTACAAACCACCTAACCCCACCTTCAATGTCAGGGGCACTGAGG
AGAAAACAGCATTCCCCTCAGCAGCTGTGCCTCCTGTCCTGGTGCATGCTCCCCAGAGTCATGT
GGCAAAGTCAGACCCAGATTTGGAGGCCACATTGGCTTGTCCTGTGCAGACAAGTGGTCAACCT
AAAGAGAGCTCTGAGGAGCCCGGCCTGCCTGAGGGGACTCCAACCTGCCAGAGACCTCGACTAA
AACGAATGCAGCAGTTTGAAGACCTTGAAGATGAAATCCCACAGTTTGTGTAGGATTGTCAAAT
TTTAGATGTTTCTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006233239 ⟹ XP_006233301

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	212,768,072 - 212,816,710 (+)	NCBI
mRatBN7.2	2	210,083,384 - 210,132,572 (+)	NCBI
Rnor_6.0	2	225,564,315 - 225,613,349 (+)	NCBI
Rnor_5.0	2	243,589,204 - 243,650,478 (+)	NCBI

Sequence:

show sequence

GTGGGCCAGGGCGGAGCACCTTTGCTGCAGCTGCCTCACAGCAGTGCTGGCTTGGCCCGGCATG
GGGGATGGAGGCAACAAGTTTGAGCCCTAGGCGGCACCAGCCGCCCGTCCCGGGCTGTGGGTGT
TCATCTGGAGTCGGCACGGGGGATACAGGATGGAGCCCCACGGATTTCAGTTTTTCTGACTGTT
AAATGAGAGGATGATTGCTCACAAACAGAAAAAGGCAAAGAAAAAACGTGTTTGGGCATCAGGC
CAACTCTCTGCCGCTATTACAACTTCTGAAATGGGGCTCAAGTCCGTAAGTTCCAACTCCATTT
TTGATCCGGAATACATCAAGGAGCTGGTGAATGATATCAGGAAGTTCTCCCATGTGTTACTATA
TTTGAAAGAAGCTATTCTTTCAGACTGTTTTAAAGAAGTCATTCATATCCGTCTGGATGAACTT
CTTCATGTTTTAAAGTCTGTAATGAGTAAGCATCAGAACCTCAATTCTGTAGACCTTCAGAACG
CTGCAGAAACGCTCGCTTCGAAAGTGAAAGCTGTGAACTTTACAGAAGTTAATGACGAAAACAA
AAACGATCTATTTCGAGAAGTCTTTTCCTCCATTGAAACTTTGGCATTTACCTTTGGAAACATC
CTCACAAACTTCCTTATGGGAGATGTAGGCAATGATTCGATACTACGACTGCCTATTTCTCGAG
AGAGTAAGTCCTTTGAAAACATTTCTATGGACTCAGTGGACTTACCTCATGAAAAAGGAAACTT
TTCTCCTATAGAACTAGACAACTTGCTGTTAAAGAACTCTGACTCTATAGAACTGGCTTTGTCT
TATGCTAAAACTTGGTCAAAATATACCAAGAACATAGTGTCCTGGGTTGAAAAAAAGCTCAACT
TGGAATTGGAGTCCACTAGAAATATTGTAAAATTGGCAGAGGCAACTAGATCTAGCATTGGAAT
ACAGGAGTTTATGCCTTTGCAGTCTCTCTTTACCAACGCTCTCCTTAATGATATACACAGCAGT
CACCTTTTACAACAGACAATCGCAGCTCTCCAAGCCAACAAATTCGTGCAGCCTCTACTTGGGA
GGAAGAATGAAATGGAGAAACAAAGGAAAGAAATAAAAGAACTTTGGAAGCAGCAGCAGAATAA
ATTGCTTGAAACAGAGACGGCTCTTAAAAAGGCAAAACTGTTATGCATGCAACGGCAAGATGAA
TACGAAAAGGCAAAATCATCCATGTTTCGAGCAGAAGAAGAGCAGCTGAGTTCAAGTGTTGGAC
TGGGAAAAAATCTCAACAAACTACTAGAAAAAAGGCGGAGATTGGAAGAAGAGGCGCTTCAAAA
AGTAGAAGAAGCAAATGAGCACTACAAAGTCTGTGTAACAAATGTTGAAGAAAGACGGAATGAT
CTAGAAAATACGAAGCGAGAAATTTTAACACAGCTCCGGACACTTGTTTTCCAGTGTGACCTTA
CACTTAAAGCTGTAACAGTTAACCTCTTTCATATGCAGCAGCTTCAGGCTGCTTCCCTCGCCAA
CAGTTTACAGTCCCTCTGTGACAGTGCCAAACTCTATGATCCAGGTCAGGAGTATAGTGAATTC
GTGAAGGCTACAAGCTCAAGTGAATTAGAAGAAAAGGTTGACGGGAATGTAAACAAACAAATAG
CCAGCAGTCCGCAGACATCTGGATATGAACCTGCTGACTCTTTAGAGGATGTTGCACGCCTCCC
TGACAGCTGTCACAAACTTGAAGAGGACAGGTGTTCCAACAGTGCAGACATGACAGGTCCTTCT
TTCATAAGATCGTGGAAGTTCGGGATGTTTAGTGACTCTGAGAGTACTGGAGGAAGCAGTGAGT
CTAGATCTCTGGATTCAGAATCTATAAGTCCAGGAGACTTTCATCGGAAACTTCCACGAACTCC
ATCCAGTGGAACCATGTCTTCTGCTGATGATCTAGATGAACGAGAGCCACCATCACCTTCAGAA
GCTGGACCCAATTCCCTCGGAACATTTAAGAAAACTTTGATGTCGAAGGCAGCTCTCACTCACA
AGTTTCGCAAGTTGAGATCCCCCACAAAGTGCAGGGATTGTGAAGGCATCGTAATGTTCCCGGG
CGTCGAGTGTGAAGAGTGTCTCCTTGTTTGTCACCGAAAGTGTTTGGAGAATTTAGTCATTGTT
TGTGGTCATCAAAAACTTCAGGGGAAAATGCACATATTTGGAGCAGAATTCATACAAGTTGCAA
AAAAGGAACCAGATGGCATCCCTTTCGTGCTAAAAATATGCGCCTCAGAAATTGAAAGTAGAGC
CTTGTGTCTCCAGGGAATTTATCGTGTTTGTGGAAACAAAATAAAAACTGAAAAACTGTGCCAA
GCTTTGGAAAATGGAATGCACTTAGTAGACATTTCAGAATTCAGTTCACATGACATCTGTGATG
TCTTGAAATTATACCTGCGACAGCTTCCAGAACCATTTATTTTATTCAGATTGTACAAGGAATT
TATAGACCTTGCAAAAGAGATACAACATGTAAATGAAGAACAAGAGGCAAAAAAAGATAGCCCC
GAAGACAAAAAGCACCCACACGTGAGCATAGAAATCAACCGCATCCTTCTGAGGAGCAAGGACC
TGCTGCGACAGCTGCCAGCATCAAACTTCAACAGTCTTCATTACCTCATCGTCCATCTGAAGCG
GGTGGTGGACCATGCAGAAGAGAACAAGATGAATTCTAAGAACTTGGGGGTGATATTTGGCCCA
ACGCTCATTAGGCCAAGGCCTACAACGGCTCCTGTCACCATCTCGTCCCTTGCTGAATATTCCA
GTCAGGCACGAGTAGTAGAGTTCCTCATTACTTACGCACAGAAGATCTTCGATGGGTCCCTCCA
GCCTCAAGCTGGTGTCATAGCTAACACAGGTGCTATTGCACCTCAAGTCGATCACGGGTGTCAT
CCAAAACCGCTCTTATCACCAGATGAGAGAGACTCGGATCATTCTTTGAAACAACTATTCTTCT
CTTCAAAGGAAGATATCCGTACTATGGATTGTGAGAGCAAAACTTTTGAATTAACTACATCATT
TGAAGAATCAGAACGCAAACAAAATGCATTGGGAAAATGTGATGCTCCCATCCTTGATAACAAA
GTACATTTGCTTTTTGACCAAGAGCTTGAGTCAGCATCCCACAAGACGGAAGATACCTGTAAAA
GCCCTAAGCTGCTCCTTCTGAGATCTGATAGGGTAGCAAATAGTGTGCAGAGACCGACTCCGAG
GACCAGGCTAAGACCTGTAAGTCTGCCTGTGGATCGACTGCTGCTGCTTGCCGGGTCTCCTACT
GAGAGAAGCAGCCGGAATACAGGAAACACAGACTCAGACAAGTTTGGCAAGAATGCCGCCTTTG
AAGGACTCCATAGAAAGGACAACTCAAATACTACTTGTTCCAAAGTTAATGGCTTTGACCAGCA
AAATGTACAGAAATCCTGGGACAAACAGAATGAGCGGAACAGTTTCACTGCCAAGACTACGGTG
ATTATCCCCAGTGCCTATGCCGAGAAGGGATTGGCAGTGAGCACGGGGAACAACAGGGGCCATT
CCAGTGGTGCTGCCCAGCCTAGTAAAGCACATGCAGACCCCGCCAGGTCTGCAAGAGACACGTC
CGAGCACAGCTCCTCTGACTCCTGCCCTGTTGCTGCTGTCAGAGCACCCAGAACACTGCAGCCC
CAGCACTGGACAACGTTTTACAAACCACCTAACCCCACCTTCAATGTCAGGGGCACTGAGGAGA
AAACAGCATTCCCCTCAGCAGCTGTGCCTCCTGTCCTGGTGCATGCTCCCCAGAGTCATGTGGC
AAAGTCAGACCCAGATTTGGAGGCCACATTGGCTTGTCCTGTGCAGACAAGTGGTCAACCTAAA
GAGAGCTCTGAGGAGCCCGGCCTGCCTGAGGGGACTCCAACCTGCCAGAGACCTCGACTAAAAC
GAATGCAGCAGTTTGAAGACCTTGAAGATGAAATCCCACAGTTTGTGTAGGATTGTCAAATTTT
AGATGTTTCTGTTTTATTTTGTTCTGTGGTGTCATTTTGTGAGAGGATGTTTGGACAGGGCCCT
TGTGTATAGGATTGCCAAAGCTGTTTGTCAGGTGTGTTGTTTGTTGATCATGTGGGTTAGGAGA
GTGTTCTGACAAGGCTCCCTTTATGCCTCACTGGAATAATCTTGTTGTAAAGAAAATGGGTGGG
TTCATGTTTTTTAGAGTTGATTTTCCCAAAAAATGATCCACTTAAATGCATCACTGACGTATGG
TAGTTTTTAGCAGTAGGTGTGATTGGGGAAGATCAGCTTTAGTGAGGAGAGAGAGACCAAGTGC
ATATTTATAAAGTATTTCTGACCACGAGAGCCTGGCGGGTGTCCATGTGCTGTGTCTCCCCACA
GTTTCACAGGGCGTCTTTGACCATTTGTGCTTCTGTAATCGTAAGTCAGCTTTGATTTTTCAAT
TGGAAATTCACCTTTTAATATTTACATAATGGCCAAAGGGTTTGCCAGTCTGTGTTTAATTACA
TTTTAATTGCCAATTTTTACATATGGCAGTTAAATTGTACCCCCAAAAATGCACTTAAACTTGA
ACTGTGTAGTTCTCTTACCTCTTATTTGACTTTAAATGGATTTAATACATTTGGTAGGGGTTGG
GAGTTTTGTTTTGTTTTTTTTAATCCCGTAGTCTTGTCTGTATAAACTGTTTCCAACAGTTCTG
AACACATTTTGTACAGTGGTCCAGGAAAGATGCTATTTTCAGAAGTTTTTAAATTCAGTACATT
TCCCCTTTTTGCTACCTGGGTTTGTTTAAACTTTCTTTTATAAGAAATGTTTTGACTTATGGGT
CATTTTATATTCTTTTTCTACCTGACTTTCAACCACTGAAAATGTATAGTTCTTTCAGATGGAG
TGAAGATTTATTTAAGTTGATCCAAAGGGTACACCCCAGTAAGCCTCTTTTCAGAAGTTTGAGA
GAAGGTGTAGATGACCAGGTCTGTTTTGTTAAAAACAAAAACCAACAACCTAGTTTTCAGAATG
TTGTGCAAACCTGTCATTCTCTGCACCATTGTTTGTCTAAGATAGGATGTAAAAGGGACAACAA
ATACAGCAGCCTTTTGTATGTGTGAATTATATTATGCTTTTGTATGACCTTGTTATATTTGATA
AATATATGTATATATCCACTTCTTAAATTATTTCAGGTTCTCATGGCTTGTCTGATAATATTGC
CTCCTACATTGTGATCTTCAGTGTAATTAACCGTTGACTTAGGGGTCAGCGCTTAGGGCCATGC
ATCCCTTAACTATACCATGGAGTGTTTTGTGACAAGTTGTGTCGGAGTCTCTGTGCCATTAAGA
AGTAAGAAGAAATTAAGCAGCCTTTTCATGGAAGCTTGGTTTTTTATTACACACCCTATTTGTA
ATTGTAAGAACCTAGAATGAAATCAGCCAGCATTTATTGAGCCCCTTCTGTATGATACAAACTT
AAAGTTCCTACATATACTTTCCTGGCAACCTGTAGTGGGTGGGTGAGCCTGCTGTCCCACTGGT
GTCAGCAGCAGAGTTAATATAGAACACACGGCTCTCTGATTTTGATGGTTGGTGTATTCAGTGA
CCATGTGATAGAACTAAGTATCAAAAGTGCTTAATAACAAATGCCCCTTATACTGCGAAAATAA
GATCACTTTGTGATCACTTCTGCACATGTGGTTCAGGAACAGTAAATATATTCTCATTGTTA

hide sequence

RefSeq Acc Id:

XM_006233240 ⟹ XP_006233302

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	212,755,767 - 212,816,710 (+)	NCBI
mRatBN7.2	2	210,071,103 - 210,132,572 (+)	NCBI
Rnor_6.0	2	225,552,075 - 225,613,349 (+)	NCBI
Rnor_5.0	2	243,589,204 - 243,650,478 (+)	NCBI

Sequence:

show sequence

TGGCGCGGTCGTGGCGGTAGCTGCAGGGGTGGCGACGGCGGCGGCGGCTCCTCGACCCAAGTCC
TCAGGCCAGCCGTGGGGGATGGGGACAGCGAGCTCCAGCCCGCTGAGGGGGCGGTGGCCGTGAG
TGATAGGCGTCCGGGTCGCGGGATGGAGCCCCACGGATTTCAGTTTTTCTGACTGTTAAATGAG
AGGATGATTGCTCACAAACAGAAAAAGGCAAAGAAAAAACGTGTTTGGGCATCAGGCCAACTCT
CTGCCGCTATTACAACTTCTGAAATGGGGCTCAAGTCCGTAAGTTCCAACTCCATTTTTGATCC
GGAATACATCAAGGAGCTGGTGAATGATATCAGGAAGTTCTCCCATGTGTTACTATATTTGAAA
GAAGCTATTCTTTCAGACTGTTTTAAAGAAGTCATTCATATCCGTCTGGATGAACTTCTTCATG
TTTTAAAGTCTGTAATGAGTAAGCATCAGAACCTCAATTCTGTAGACCTTCAGAACGCTGCAGA
AACGCTCGCTTCGAAAGTGAAAGCTGTGAACTTTACAGAAGTTAATGACGAAAACAAAAACGAT
CTATTTCGAGAAGTCTTTTCCTCCATTGAAACTTTGGCATTTACCTTTGGAAACATCCTCACAA
ACTTCCTTATGGGAGATGTAGGCAATGATTCGATACTACGACTGCCTATTTCTCGAGAGAGTAA
GTCCTTTGAAAACATTTCTATGGACTCAGTGGACTTACCTCATGAAAAAGGAAACTTTTCTCCT
ATAGAACTAGACAACTTGCTGTTAAAGAACTCTGACTCTATAGAACTGGCTTTGTCTTATGCTA
AAACTTGGTCAAAATATACCAAGAACATAGTGTCCTGGGTTGAAAAAAAGCTCAACTTGGAATT
GGAGTCCACTAGAAATATTGTAAAATTGGCAGAGGCAACTAGATCTAGCATTGGAATACAGGAG
TTTATGCCTTTGCAGTCTCTCTTTACCAACGCTCTCCTTAATGATATACACAGCAGTCACCTTT
TACAACAGACAATCGCAGCTCTCCAAGCCAACAAATTCGTGCAGCCTCTACTTGGGAGGAAGAA
TGAAATGGAGAAACAAAGGAAAGAAATAAAAGAACTTTGGAAGCAGCAGCAGAATAAATTGCTT
GAAACAGAGACGGCTCTTAAAAAGGCAAAACTGTTATGCATGCAACGGCAAGATGAATACGAAA
AGGCAAAATCATCCATGTTTCGAGCAGAAGAAGAGCAGCTGAGTTCAAGTGTTGGACTGGGAAA
AAATCTCAACAAACTACTAGAAAAAAGGCGGAGATTGGAAGAAGAGGCGCTTCAAAAAGTAGAA
GAAGCAAATGAGCACTACAAAGTCTGTGTAACAAATGTTGAAGAAAGACGGAATGATCTAGAAA
ATACGAAGCGAGAAATTTTAACACAGCTCCGGACACTTGTTTTCCAGTGTGACCTTACACTTAA
AGCTGTAACAGTTAACCTCTTTCATATGCAGCAGCTTCAGGCTGCTTCCCTCGCCAACAGTTTA
CAGTCCCTCTGTGACAGTGCCAAACTCTATGATCCAGGTCAGGAGTATAGTGAATTCGTGAAGG
CTACAAGCTCAAGTGAATTAGAAGAAAAGGTTGACGGGAATGTAAACAAACAAATAGCCAGCAG
TCCGCAGACATCTGGATATGAACCTGCTGACTCTTTAGAGGATGTTGCACGCCTCCCTGACAGC
TGTCACAAACTTGAAGAGGACAGGTGTTCCAACAGTGCAGACATGACAGGTCCTTCTTTCATAA
GATCGTGGAAGTTCGGGATGTTTAGTGACTCTGAGAGTACTGGAGGAAGCAGTGAGTCTAGATC
TCTGGATTCAGAATCTATAAGTCCAGGAGACTTTCATCGGAAACTTCCACGAACTCCATCCAGT
GGAACCATGTCTTCTGCTGATGATCTAGATGAACGAGAGCCACCATCACCTTCAGAAGCTGGAC
CCAATTCCCTCGGAACATTTAAGAAAACTTTGATGTCGAAGGCAGCTCTCACTCACAAGTTTCG
CAAGTTGAGATCCCCCACAAAGTGCAGGGATTGTGAAGGCATCGTAATGTTCCCGGGCGTCGAG
TGTGAAGAGTGTCTCCTTGTTTGTCACCGAAAGTGTTTGGAGAATTTAGTCATTGTTTGTGGTC
ATCAAAAACTTCAGGGGAAAATGCACATATTTGGAGCAGAATTCATACAAGTTGCAAAAAAGGA
ACCAGATGGCATCCCTTTCGTGCTAAAAATATGCGCCTCAGAAATTGAAAGTAGAGCCTTGTGT
CTCCAGGGAATTTATCGTGTTTGTGGAAACAAAATAAAAACTGAAAAACTGTGCCAAGCTTTGG
AAAATGGAATGCACTTAGTAGACATTTCAGAATTCAGTTCACATGACATCTGTGATGTCTTGAA
ATTATACCTGCGACAGCTTCCAGAACCATTTATTTTATTCAGATTGTACAAGGAATTTATAGAC
CTTGCAAAAGAGATACAACATGTAAATGAAGAACAAGAGGCAAAAAAAGATAGCCCCGAAGACA
AAAAGCACCCACACGTGAGCATAGAAATCAACCGCATCCTTCTGAGGAGCAAGGACCTGCTGCG
ACAGCTGCCAGCATCAAACTTCAACAGTCTTCATTACCTCATCGTCCATCTGAAGCGGGTGGTG
GACCATGCAGAAGAGAACAAGATGAATTCTAAGAACTTGGGGGTGATATTTGGCCCAACGCTCA
TTAGGCCAAGGCCTACAACGGCTCCTGTCACCATCTCGTCCCTTGCTGAATATTCCAGTCAGGC
ACGAGTAGTAGAGTTCCTCATTACTTACGCACAGAAGATCTTCGATGGGTCCCTCCAGCCTCAA
GCTGGTGTCATAGCTAACACAGGTGCTATTGCACCTCAAGTCGATCACGGGTGTCATCCAAAAC
CGCTCTTATCACCAGATGAGAGAGACTCGGATCATTCTTTGAAACAACTATTCTTCTCTTCAAA
GGAAGATATCCGTACTATGGATTGTGAGAGCAAAACTTTTGAATTAACTACATCATTTGAAGAA
TCAGAACGCAAACAAAATGCATTGGGAAAATGTGATGCTCCCATCCTTGATAACAAAGTACATT
TGCTTTTTGACCAAGAGCTTGAGTCAGCATCCCACAAGACGGAAGATACCTGTAAAAGCCCTAA
GCTGCTCCTTCTGAGATCTGATAGGGTAGCAAATAGTGTGCAGAGACCGACTCCGAGGACCAGG
CTAAGACCTGTAAGTCTGCCTGTGGATCGACTGCTGCTGCTTGCCGGGTCTCCTACTGAGAGAA
GCAGCCGGAATACAGGAAACACAGACTCAGACAAGTTTGGCAAGAATGCCGCCTTTGAAGGACT
CCATAGAAAGGACAACTCAAATACTACTTGTTCCAAAGTTAATGGCTTTGACCAGCAAAATGTA
CAGAAATCCTGGGACAAACAGAATGAGCGGAACAGTTTCACTGCCAAGACTACGGTGATTATCC
CCAGTGCCTATGCCGAGAAGGGATTGGCAGTGAGCACGGGGAACAACAGGGGCCATTCCAGTGG
TGCTGCCCAGCCTAGTAAAGCACATGCAGACCCCGCCAGGTCTGCAAGAGACACGTCCGAGCAC
AGCTCCTCTGACTCCTGCCCTGTTGCTGCTGTCAGAGCACCCAGAACACTGCAGCCCCAGCACT
GGACAACGTTTTACAAACCACCTAACCCCACCTTCAATGTCAGGGGCACTGAGGAGAAAACAGC
ATTCCCCTCAGCAGCTGTGCCTCCTGTCCTGGTGCATGCTCCCCAGAGTCATGTGGCAAAGTCA
GACCCAGATTTGGAGGCCACATTGGCTTGTCCTGTGCAGACAAGTGGTCAACCTAAAGAGAGCT
CTGAGGAGCCCGGCCTGCCTGAGGGGACTCCAACCTGCCAGAGACCTCGACTAAAACGAATGCA
GCAGTTTGAAGACCTTGAAGATGAAATCCCACAGTTTGTGTAGGATTGTCAAATTTTAGATGTT
TCTGTTTTATTTTGTTCTGTGGTGTCATTTTGTGAGAGGATGTTTGGACAGGGCCCTTGTGTAT
AGGATTGCCAAAGCTGTTTGTCAGGTGTGTTGTTTGTTGATCATGTGGGTTAGGAGAGTGTTCT
GACAAGGCTCCCTTTATGCCTCACTGGAATAATCTTGTTGTAAAGAAAATGGGTGGGTTCATGT
TTTTTAGAGTTGATTTTCCCAAAAAATGATCCACTTAAATGCATCACTGACGTATGGTAGTTTT
TAGCAGTAGGTGTGATTGGGGAAGATCAGCTTTAGTGAGGAGAGAGAGACCAAGTGCATATTTA
TAAAGTATTTCTGACCACGAGAGCCTGGCGGGTGTCCATGTGCTGTGTCTCCCCACAGTTTCAC
AGGGCGTCTTTGACCATTTGTGCTTCTGTAATCGTAAGTCAGCTTTGATTTTTCAATTGGAAAT
TCACCTTTTAATATTTACATAATGGCCAAAGGGTTTGCCAGTCTGTGTTTAATTACATTTTAAT
TGCCAATTTTTACATATGGCAGTTAAATTGTACCCCCAAAAATGCACTTAAACTTGAACTGTGT
AGTTCTCTTACCTCTTATTTGACTTTAAATGGATTTAATACATTTGGTAGGGGTTGGGAGTTTT
GTTTTGTTTTTTTTAATCCCGTAGTCTTGTCTGTATAAACTGTTTCCAACAGTTCTGAACACAT
TTTGTACAGTGGTCCAGGAAAGATGCTATTTTCAGAAGTTTTTAAATTCAGTACATTTCCCCTT
TTTGCTACCTGGGTTTGTTTAAACTTTCTTTTATAAGAAATGTTTTGACTTATGGGTCATTTTA
TATTCTTTTTCTACCTGACTTTCAACCACTGAAAATGTATAGTTCTTTCAGATGGAGTGAAGAT
TTATTTAAGTTGATCCAAAGGGTACACCCCAGTAAGCCTCTTTTCAGAAGTTTGAGAGAAGGTG
TAGATGACCAGGTCTGTTTTGTTAAAAACAAAAACCAACAACCTAGTTTTCAGAATGTTGTGCA
AACCTGTCATTCTCTGCACCATTGTTTGTCTAAGATAGGATGTAAAAGGGACAACAAATACAGC
AGCCTTTTGTATGTGTGAATTATATTATGCTTTTGTATGACCTTGTTATATTTGATAAATATAT
GTATATATCCACTTCTTAAATTATTTCAGGTTCTCATGGCTTGTCTGATAATATTGCCTCCTAC
ATTGTGATCTTCAGTGTAATTAACCGTTGACTTAGGGGTCAGCGCTTAGGGCCATGCATCCCTT
AACTATACCATGGAGTGTTTTGTGACAAGTTGTGTCGGAGTCTCTGTGCCATTAAGAAGTAAGA
AGAAATTAAGCAGCCTTTTCATGGAAGCTTGGTTTTTTATTACACACCCTATTTGTAATTGTAA
GAACCTAGAATGAAATCAGCCAGCATTTATTGAGCCCCTTCTGTATGATACAAACTTAAAGTTC
CTACATATACTTTCCTGGCAACCTGTAGTGGGTGGGTGAGCCTGCTGTCCCACTGGTGTCAGCA
GCAGAGTTAATATAGAACACACGGCTCTCTGATTTTGATGGTTGGTGTATTCAGTGACCATGTG
ATAGAACTAAGTATCAAAAGTGCTTAATAACAAATGCCCCTTATACTGCGAAAATAAGATCACT
TTGTGATCACTTCTGCACATGTGGTTCAGGAACAGTAAATATATTCTCATTGTTA

hide sequence

RefSeq Acc Id:

XM_039102436 ⟹ XP_038958364

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	212,744,626 - 212,816,710 (+)	NCBI
mRatBN7.2	2	210,060,036 - 210,132,572 (+)	NCBI

RefSeq Acc Id:

XM_039102437 ⟹ XP_038958365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	212,757,549 - 212,816,710 (+)	NCBI
mRatBN7.2	2	210,072,862 - 210,132,572 (+)	NCBI

RefSeq Acc Id:

XM_039102440 ⟹ XP_038958368

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	212,768,103 - 212,816,710 (+)	NCBI
mRatBN7.2	2	210,083,506 - 210,132,572 (+)	NCBI

RefSeq Acc Id:

XM_063281944 ⟹ XP_063138014

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	212,768,525 - 212,816,710 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001009405	(Get FASTA)	NCBI Sequence Viewer
	NP_001426550	(Get FASTA)	NCBI Sequence Viewer
	NP_001426551	(Get FASTA)	NCBI Sequence Viewer
	NP_001426552	(Get FASTA)	NCBI Sequence Viewer
	NP_001426553	(Get FASTA)	NCBI Sequence Viewer
	XP_006233301	(Get FASTA)	NCBI Sequence Viewer
	XP_006233302	(Get FASTA)	NCBI Sequence Viewer
	XP_038958364	(Get FASTA)	NCBI Sequence Viewer
	XP_038958365	(Get FASTA)	NCBI Sequence Viewer
	XP_038958368	(Get FASTA)	NCBI Sequence Viewer
	XP_063138014	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87167	(Get FASTA)	NCBI Sequence Viewer
	EDL82092	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017076
	ENSRNOP00000062636
	ENSRNOP00000062636.1
	ENSRNOP00000106014
GenBank Protein	Q5PQJ5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001009405 ⟸ NM_001009405

- UniProtKB:

A0A8I6ADH0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSKHQNLNSVDLQNAAETLASKVKAVNFTEVNDENKNDLFREVFSSIETLAFTFGNILTNFLMG
DVGNDSILRLPISRESKSFENISMDSVDLPHEKGNFSPIELDNLLLKNSDSIELALSYAKTWSK
YTKNIVSWVEKKLNLELESTRNIVKLAEATRSSIGIQEFMPLQSLFTNALLNDIHSSHLLQQTI
AALQANKFVQPLLGRKNEMEKQRKEIKELWKQQQNKLLETETALKKAKLLCMQRQDEYEKAKSS
MFRAEEEQLSSSVGLGKNLNKLLEKRRRLEEEALQKVEEANEHYKVCVTNVEERRNDLENTKRE
ILTQLRTLVFQCDLTLKAVTVNLFHMQQLQAASLANSLQSLCDSAKLYDPGQEYSEFVKATSSS
ELEEKVDGNVNKQIASSPQTSGYEPADSLEDVARLPDSCHKLEEDRCSNSADMTGPSFIRSWKF
GMFSDSESTGGSSESRSLDSESISPGDFHRKLPRTPSSGTMSSADDLDEREPPSPSEAGPNSLG
TFKKTLMSKAALTHKFRKLRSPTKCRDCEGIVMFPGVECEECLLVCHRKCLENLVIVCGHQKLQ
GKMHIFGAEFIQVAKKEPDGIPFVLKICASEIESRALCLQGIYRVCGNKIKTEKLCQALENGMH
LVDISEFSSHDICDVLKLYLRQLPEPFILFRLYKEFIDLAKEIQHVNEEQEAKKDSPEDKKHPH
VSIEINRILLRSKDLLRQLPASNFNSLHYLIVHLKRVVDHAEENKMNSKNLGVIFGPTLIRPRP
TTAPVTISSLAEYSSQARVVEFLITYAQKIFDGSLQPQAGVIANTGAIAPQVDHGCHPKPLLSP
DERDSDHSLKQLFFSSKEDIRTMDCESKTFELTTSFEESERKQNALGKCDAPILDNKVHLLFDQ
ELESASHKTEDTCKSPKLLLLRSDRVANSVQRPTPRTRLRPVSLPVDRLLLLAGSPTERSSRNT
GNTDSDKFGKNAAFEGLHRKDNSNTTCSKVNGFDQQNVQKSWDKQNERNSFTAKTTVIIPSAYA
EKGLAVSTGNNRGHSSGAAQPSKAHADPARSARDTSEHSSSDSCPVAAVRAPRTLQPQHWTTFY
KPPNPTFNVRGTEEKTAFPSAAVPPVLVHAPQSHVAKSDPDLEATLACPVQTSGQPKESSEEPG
LPEGTPTCQRPRLKRMQQFEDLEDEIPQFV

hide sequence

RefSeq Acc Id:

XP_006233302 ⟸ XM_006233240

- Peptide Label:

isoform X1

- Sequence:

show sequence

MIAHKQKKAKKKRVWASGQLSAAITTSEMGLKSVSSNSIFDPEYIKELVNDIRKFSHVLLYLKE
AILSDCFKEVIHIRLDELLHVLKSVMSKHQNLNSVDLQNAAETLASKVKAVNFTEVNDENKNDL
FREVFSSIETLAFTFGNILTNFLMGDVGNDSILRLPISRESKSFENISMDSVDLPHEKGNFSPI
ELDNLLLKNSDSIELALSYAKTWSKYTKNIVSWVEKKLNLELESTRNIVKLAEATRSSIGIQEF
MPLQSLFTNALLNDIHSSHLLQQTIAALQANKFVQPLLGRKNEMEKQRKEIKELWKQQQNKLLE
TETALKKAKLLCMQRQDEYEKAKSSMFRAEEEQLSSSVGLGKNLNKLLEKRRRLEEEALQKVEE
ANEHYKVCVTNVEERRNDLENTKREILTQLRTLVFQCDLTLKAVTVNLFHMQQLQAASLANSLQ
SLCDSAKLYDPGQEYSEFVKATSSSELEEKVDGNVNKQIASSPQTSGYEPADSLEDVARLPDSC
HKLEEDRCSNSADMTGPSFIRSWKFGMFSDSESTGGSSESRSLDSESISPGDFHRKLPRTPSSG
TMSSADDLDEREPPSPSEAGPNSLGTFKKTLMSKAALTHKFRKLRSPTKCRDCEGIVMFPGVEC
EECLLVCHRKCLENLVIVCGHQKLQGKMHIFGAEFIQVAKKEPDGIPFVLKICASEIESRALCL
QGIYRVCGNKIKTEKLCQALENGMHLVDISEFSSHDICDVLKLYLRQLPEPFILFRLYKEFIDL
AKEIQHVNEEQEAKKDSPEDKKHPHVSIEINRILLRSKDLLRQLPASNFNSLHYLIVHLKRVVD
HAEENKMNSKNLGVIFGPTLIRPRPTTAPVTISSLAEYSSQARVVEFLITYAQKIFDGSLQPQA
GVIANTGAIAPQVDHGCHPKPLLSPDERDSDHSLKQLFFSSKEDIRTMDCESKTFELTTSFEES
ERKQNALGKCDAPILDNKVHLLFDQELESASHKTEDTCKSPKLLLLRSDRVANSVQRPTPRTRL
RPVSLPVDRLLLLAGSPTERSSRNTGNTDSDKFGKNAAFEGLHRKDNSNTTCSKVNGFDQQNVQ
KSWDKQNERNSFTAKTTVIIPSAYAEKGLAVSTGNNRGHSSGAAQPSKAHADPARSARDTSEHS
SSDSCPVAAVRAPRTLQPQHWTTFYKPPNPTFNVRGTEEKTAFPSAAVPPVLVHAPQSHVAKSD
PDLEATLACPVQTSGQPKESSEEPGLPEGTPTCQRPRLKRMQQFEDLEDEIPQFV

hide sequence

RefSeq Acc Id:

XP_006233301 ⟸ XM_006233239

- Peptide Label:

isoform X1

- Sequence:

show sequence

MIAHKQKKAKKKRVWASGQLSAAITTSEMGLKSVSSNSIFDPEYIKELVNDIRKFSHVLLYLKE
AILSDCFKEVIHIRLDELLHVLKSVMSKHQNLNSVDLQNAAETLASKVKAVNFTEVNDENKNDL
FREVFSSIETLAFTFGNILTNFLMGDVGNDSILRLPISRESKSFENISMDSVDLPHEKGNFSPI
ELDNLLLKNSDSIELALSYAKTWSKYTKNIVSWVEKKLNLELESTRNIVKLAEATRSSIGIQEF
MPLQSLFTNALLNDIHSSHLLQQTIAALQANKFVQPLLGRKNEMEKQRKEIKELWKQQQNKLLE
TETALKKAKLLCMQRQDEYEKAKSSMFRAEEEQLSSSVGLGKNLNKLLEKRRRLEEEALQKVEE
ANEHYKVCVTNVEERRNDLENTKREILTQLRTLVFQCDLTLKAVTVNLFHMQQLQAASLANSLQ
SLCDSAKLYDPGQEYSEFVKATSSSELEEKVDGNVNKQIASSPQTSGYEPADSLEDVARLPDSC
HKLEEDRCSNSADMTGPSFIRSWKFGMFSDSESTGGSSESRSLDSESISPGDFHRKLPRTPSSG
TMSSADDLDEREPPSPSEAGPNSLGTFKKTLMSKAALTHKFRKLRSPTKCRDCEGIVMFPGVEC
EECLLVCHRKCLENLVIVCGHQKLQGKMHIFGAEFIQVAKKEPDGIPFVLKICASEIESRALCL
QGIYRVCGNKIKTEKLCQALENGMHLVDISEFSSHDICDVLKLYLRQLPEPFILFRLYKEFIDL
AKEIQHVNEEQEAKKDSPEDKKHPHVSIEINRILLRSKDLLRQLPASNFNSLHYLIVHLKRVVD
HAEENKMNSKNLGVIFGPTLIRPRPTTAPVTISSLAEYSSQARVVEFLITYAQKIFDGSLQPQA
GVIANTGAIAPQVDHGCHPKPLLSPDERDSDHSLKQLFFSSKEDIRTMDCESKTFELTTSFEES
ERKQNALGKCDAPILDNKVHLLFDQELESASHKTEDTCKSPKLLLLRSDRVANSVQRPTPRTRL
RPVSLPVDRLLLLAGSPTERSSRNTGNTDSDKFGKNAAFEGLHRKDNSNTTCSKVNGFDQQNVQ
KSWDKQNERNSFTAKTTVIIPSAYAEKGLAVSTGNNRGHSSGAAQPSKAHADPARSARDTSEHS
SSDSCPVAAVRAPRTLQPQHWTTFYKPPNPTFNVRGTEEKTAFPSAAVPPVLVHAPQSHVAKSD
PDLEATLACPVQTSGQPKESSEEPGLPEGTPTCQRPRLKRMQQFEDLEDEIPQFV

hide sequence

Ensembl Acc Id:

ENSRNOP00000017076 ⟸ ENSRNOT00000017076

Ensembl Acc Id:

ENSRNOP00000062636 ⟸ ENSRNOT00000066486

RefSeq Acc Id:	XP_038958364 ⟸ XM_039102436
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQJ5 (UniProtKB/Swiss-Prot), A6HVF6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958365 ⟸ XM_039102437
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038958368 ⟸ XM_039102440
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000092338 ⟸ ENSRNOT00000118092

RefSeq Acc Id:	XP_063138014 ⟸ XM_063281944
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQJ5 (UniProtKB/Swiss-Prot), A6HVF6 (UniProtKB/TrEMBL)

Protein Domains

F-BAR Phorbol-ester/DAG-type Rho-GAP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PQJ5-F1-model_v2	AlphaFold	Q5PQJ5	1-1266	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691721

Promoter ID:

EPDNEW_R2246

Type:

multiple initiation site

Name:

Arhgap29_1

Description:

Rho GTPase activating protein 29

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	225,552,079 - 225,552,139	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306185	AgrOrtholog
BioCyc Gene	G2FUF-51383	BioCyc
Ensembl Genes	ENSRNOG00000012563	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000017076	ENTREZGENE
	ENSRNOT00000066486	ENTREZGENE
	ENSRNOT00000066486.4	UniProtKB/Swiss-Prot
	ENSRNOT00000168211	ENTREZGENE
Gene3D-CATH	1.10.555.10	UniProtKB/Swiss-Prot
	1.20.1270.60	UniProtKB/Swiss-Prot
	3.30.60.20	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7135494	IMAGE-MGC_LOAD
InterPro	AH/BAR_dom_sf	UniProtKB/Swiss-Prot
	C1-like_sf	UniProtKB/Swiss-Prot
	F_BAR	UniProtKB/Swiss-Prot
	GMIP/FCHO2-like_FCH	UniProtKB/Swiss-Prot
	PE/DAG-bd	UniProtKB/Swiss-Prot
	RHG29_45_N	UniProtKB/Swiss-Prot
	Rho_GTPase_activation_prot	UniProtKB/Swiss-Prot
	RhoGAP	UniProtKB/Swiss-Prot
	RhoGAP_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:310833	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:95332	IMAGE-MGC_LOAD
NCBI Gene	310833	ENTREZGENE
PANTHER	RHO GTPASE-ACTIVATING PROTEIN 29	UniProtKB/Swiss-Prot
	SPERMATHECAL PHYSIOLOGY VARIANT	UniProtKB/Swiss-Prot
Pfam	C1_1	UniProtKB/Swiss-Prot
	GMIP-like_FCH	UniProtKB/Swiss-Prot
	RHG29_45_N	UniProtKB/Swiss-Prot
	RhoGAP	UniProtKB/Swiss-Prot
PhenoGen	Arhgap29	PhenoGen
PROSITE	F_BAR	UniProtKB/Swiss-Prot
	RHOGAP	UniProtKB/Swiss-Prot
	ZF_DAG_PE_1	UniProtKB/Swiss-Prot
	ZF_DAG_PE_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000012563	RatGTEx
SMART	RhoGAP	UniProtKB/Swiss-Prot
	SM00109	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF103657	UniProtKB/Swiss-Prot
	SSF48350	UniProtKB/Swiss-Prot
	SSF57889	UniProtKB/Swiss-Prot
UniProt	A0A8I6ADH0	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0KWE8_RAT	UniProtKB/TrEMBL
	A0ABK0LHY8_RAT	UniProtKB/TrEMBL
	A0ABK0M5V6_RAT	UniProtKB/TrEMBL
	A6HVF6	ENTREZGENE, UniProtKB/TrEMBL
	F1LPZ1_RAT	UniProtKB/TrEMBL
	Q5PQJ5	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Arhgap29	Rho GTPase activating protein 29	LOC103695137	uncharacterized LOC103695137	Data merged from RGD:9078043	737654	PROVISIONAL
2014-08-25	LOC103695137	uncharacterized LOC103695137			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-03-30	Arhgap29	Rho GTPase activating protein 29	RGD1306185	similar to Parg1-pending protein	Symbol and Name updated	1299863	APPROVED
2005-12-06	RGD1306185	similar to Parg1-pending protein	RGD1306185_predicted	similar to Parg1-pending protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306185_predicted	similar to Parg1-pending protein (predicted)	LOC310833_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC310833_predicted	similar to Parg1-pending protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI