Fam234b (family with sequence similarity 234, member B) - Rat Genome Database

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Gene: Fam234b (family with sequence similarity 234, member B) Rattus norvegicus
Analyze
Symbol: Fam234b
Name: family with sequence similarity 234, member B
RGD ID: 1306151
Description: Predicted to be located in Golgi apparatus; membrane; and microtubule organizing center. Orthologous to human FAM234B (family with sequence similarity 234 member B); INTERACTS WITH bisphenol A; decabromodiphenyl ether; paracetamol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC362455; LOC362455; RGD1306151; similar to hypothetical protein DKFZp761D0211; uncharacterized protein KIAA1467 homolog; uncharacterized protein LOC362455
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84169,779,651 - 169,854,024 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4169,779,737 - 169,828,678 (+)EnsemblGRCr8
mRatBN7.24168,048,313 - 168,124,017 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4168,048,396 - 168,097,338 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4174,343,624 - 174,384,877 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04170,124,864 - 170,166,117 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04168,748,745 - 168,791,586 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04168,976,797 - 169,052,750 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4168,976,859 - 169,019,561 (+)Ensemblrn6Rnor6.0
Rnor_5.04233,247,117 - 233,290,088 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44172,149,689 - 172,190,878 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4156,646,736 - 156,688,790 (+)NCBICelera
RGSC_v3.14172,393,462 - 172,433,858 (+)NCBI
Cytogenetic Map4q43NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:21873635  


Genomics

Comparative Map Data
Fam234b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84169,779,651 - 169,854,024 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4169,779,737 - 169,828,678 (+)EnsemblGRCr8
mRatBN7.24168,048,313 - 168,124,017 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4168,048,396 - 168,097,338 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4174,343,624 - 174,384,877 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04170,124,864 - 170,166,117 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04168,748,745 - 168,791,586 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04168,976,797 - 169,052,750 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4168,976,859 - 169,019,561 (+)Ensemblrn6Rnor6.0
Rnor_5.04233,247,117 - 233,290,088 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44172,149,689 - 172,190,878 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4156,646,736 - 156,688,790 (+)NCBICelera
RGSC_v3.14172,393,462 - 172,433,858 (+)NCBI
Cytogenetic Map4q43NCBI
FAM234B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381213,044,381 - 13,083,449 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1213,044,185 - 13,142,521 (+)Ensemblhg38GRCh38
GRCh371213,197,315 - 13,236,383 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361213,088,582 - 13,127,650 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1218,346,197 - 18,385,250 (+)NCBICelera
Cytogenetic Map12p13.1NCBI
HuRef1212,967,424 - 13,006,477 (+)NCBIHuRef
CHM1_11213,162,735 - 13,201,779 (+)NCBICHM1_1
T2T-CHM13v2.01212,918,604 - 12,957,659 (+)NCBIT2T-CHM13v2.0
Fam234b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396135,173,881 - 135,213,240 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6135,174,975 - 135,221,953 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm386135,196,880 - 135,236,242 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6135,197,977 - 135,244,955 (+)Ensemblmm10GRCm38
MGSCv376135,148,005 - 135,186,258 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366135,163,745 - 135,200,715 (+)NCBIMGSCv36mm8
Celera6138,152,578 - 138,190,242 (+)NCBICelera
Cytogenetic Map6G1NCBI
cM Map666.02NCBI
Fam234b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554139,899,940 - 9,932,050 (+)Ensembl
ChiLan1.0NW_0049554139,899,940 - 9,932,050 (+)NCBIChiLan1.0ChiLan1.0
FAM234B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21018,500,392 - 18,539,477 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11218,497,243 - 18,536,237 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01213,056,208 - 13,095,200 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11213,460,006 - 13,498,904 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1213,459,629 - 13,498,904 (+)EnsemblpanPan2panpan1.1
FAM234B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12733,302,816 - 33,337,751 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2733,305,231 - 33,337,577 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2713,106,966 - 13,141,792 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02733,608,740 - 33,643,565 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2733,608,760 - 33,643,524 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12733,503,101 - 33,537,903 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02733,452,414 - 33,487,215 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02712,842,210 - 12,877,023 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fam234b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494594,518,537 - 94,552,880 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365874,246,004 - 4,280,817 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365874,246,172 - 4,280,506 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM234B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl559,413,064 - 59,491,536 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1559,410,908 - 59,493,052 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2562,763,745 - 62,827,016 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM234B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11112,953,013 - 12,989,151 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1112,952,976 - 12,989,305 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606922,329,729 - 22,365,860 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam234b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475224,915,436 - 24,955,879 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475224,916,838 - 24,955,567 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Fam234b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1614,193,295 - 14,232,339 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fam234b
565 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:256
Count of miRNA genes:177
Interacting mature miRNAs:211
Transcripts:ENSRNOT00000068663
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4149763204169799698Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4148121375176967367Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat

Markers in Region
D4Rat68  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84169,799,519 - 169,799,698 (+)Marker Load Pipeline
mRatBN7.24168,068,179 - 168,069,246 (+)MAPPERmRatBN7.2
mRatBN7.24168,068,179 - 168,068,358 (+)MAPPERmRatBN7.2
Rnor_6.04168,996,642 - 168,998,263NCBIRnor6.0
Rnor_6.04168,996,642 - 168,996,820NCBIRnor6.0
Rnor_5.04233,266,962 - 233,267,140UniSTSRnor5.0
RGSC_v3.44172,169,471 - 172,169,650RGDRGSC3.4
RGSC_v3.44172,169,472 - 172,169,650UniSTSRGSC3.4
Celera4156,666,511 - 156,666,677UniSTS
RGSC_v3.14172,414,408 - 172,414,586RGD
RH 3.4 Map41021.2UniSTS
RH 3.4 Map41021.2RGD
SHRSP x BN Map487.2799RGD
SHRSP x BN Map487.2799UniSTS
FHH x ACI Map4107.8399RGD
Cytogenetic Map4q43UniSTS
AU046710  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24168,068,177 - 168,068,360 (+)MAPPERmRatBN7.2
mRatBN7.24168,068,177 - 168,069,246 (+)MAPPERmRatBN7.2
Rnor_6.04168,996,640 - 168,998,265NCBIRnor6.0
Rnor_6.04168,996,640 - 168,996,822NCBIRnor6.0
Rnor_5.04233,266,960 - 233,267,142UniSTSRnor5.0
RGSC_v3.44172,169,470 - 172,169,652UniSTSRGSC3.4
Celera4156,666,509 - 156,666,679UniSTS
Cytogenetic Map4q43UniSTS
RH139407  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84169,820,786 - 169,820,952 (+)Marker Load Pipeline
mRatBN7.24168,089,448 - 168,089,614 (+)MAPPERmRatBN7.2
Rnor_6.04169,019,356 - 169,019,521NCBIRnor6.0
Rnor_5.04233,289,882 - 233,290,047UniSTSRnor5.0
RGSC_v3.44172,190,673 - 172,190,838UniSTSRGSC3.4
Celera4156,688,585 - 156,688,750UniSTS
RH 3.4 Map41021.1UniSTS
Cytogenetic Map4q43UniSTS
RH141826  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24168,088,154 - 168,088,357 (+)MAPPERmRatBN7.2
Rnor_6.04169,018,062 - 169,018,264NCBIRnor6.0
Rnor_5.04233,288,588 - 233,288,790UniSTSRnor5.0
RGSC_v3.44172,189,379 - 172,189,581UniSTSRGSC3.4
Celera4156,687,291 - 156,687,493UniSTS
RH 3.4 Map41024.3UniSTS
Cytogenetic Map4q43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 91 59 6 355 191 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000068663   ⟹   ENSRNOP00000063612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4169,779,746 - 169,820,992 (+)Ensembl
mRatBN7.2 Ensembl4168,048,396 - 168,089,654 (+)Ensembl
Rnor_6.0 Ensembl4168,976,859 - 169,019,561 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100976   ⟹   ENSRNOP00000092666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4169,791,596 - 169,818,262 (+)Ensembl
mRatBN7.2 Ensembl4168,060,256 - 168,086,924 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114246   ⟹   ENSRNOP00000077658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4169,779,820 - 169,820,992 (+)Ensembl
mRatBN7.2 Ensembl4168,048,735 - 168,089,654 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116621   ⟹   ENSRNOP00000097300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4169,779,737 - 169,828,678 (+)Ensembl
mRatBN7.2 Ensembl4168,048,396 - 168,097,338 (+)Ensembl
RefSeq Acc Id: NM_001108652   ⟹   NP_001102122
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,779,737 - 169,820,992 (+)NCBI
mRatBN7.24168,048,396 - 168,089,654 (+)NCBI
Rnor_6.04168,976,859 - 169,019,561 (+)NCBI
Rnor_5.04233,247,117 - 233,290,088 (+)NCBI
RGSC_v3.44172,149,689 - 172,190,878 (+)RGD
Celera4156,646,736 - 156,688,790 (+)RGD
Sequence:
RefSeq Acc Id: XM_039107909   ⟹   XP_038963837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,780,026 - 169,854,024 (+)NCBI
mRatBN7.24168,048,689 - 168,124,017 (+)NCBI
RefSeq Acc Id: XM_039107910   ⟹   XP_038963838
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,780,031 - 169,854,024 (+)NCBI
mRatBN7.24168,048,691 - 168,124,015 (+)NCBI
RefSeq Acc Id: XM_039107911   ⟹   XP_038963839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,780,031 - 169,820,993 (+)NCBI
mRatBN7.24168,048,692 - 168,089,655 (+)NCBI
RefSeq Acc Id: XM_039107912   ⟹   XP_038963840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,779,651 - 169,854,024 (+)NCBI
mRatBN7.24168,048,313 - 168,124,017 (+)NCBI
RefSeq Acc Id: XM_039107913   ⟹   XP_038963841
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,779,651 - 169,854,024 (+)NCBI
mRatBN7.24168,048,313 - 168,124,015 (+)NCBI
RefSeq Acc Id: XM_063286371   ⟹   XP_063142441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,779,805 - 169,820,993 (+)NCBI
RefSeq Acc Id: XM_063286372   ⟹   XP_063142442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,779,651 - 169,820,993 (+)NCBI
RefSeq Acc Id: NP_001102122   ⟸   NM_001108652
- UniProtKB: D3ZWJ9 (UniProtKB/TrEMBL),   A0A8I6AHZ5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000063612   ⟸   ENSRNOT00000068663
RefSeq Acc Id: XP_038963840   ⟸   XM_039107912
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AHZ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963841   ⟸   XM_039107913
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AHZ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963837   ⟸   XM_039107909
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AHZ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963838   ⟸   XM_039107910
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AHZ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963839   ⟸   XM_039107911
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AHZ5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092666   ⟸   ENSRNOT00000100976
Ensembl Acc Id: ENSRNOP00000077658   ⟸   ENSRNOT00000114246
Ensembl Acc Id: ENSRNOP00000097300   ⟸   ENSRNOT00000116621
RefSeq Acc Id: XP_063142442   ⟸   XM_063286372
- Peptide Label: isoform X7
- UniProtKB: A0A8L2QV23 (UniProtKB/TrEMBL),   A0A8I6AHZ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142441   ⟸   XM_063286371
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZKC6 (UniProtKB/TrEMBL),   A0A8I6AHZ5 (UniProtKB/TrEMBL)
Protein Domains
FAM234A/B beta-propeller

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZWJ9-F1-model_v2 AlphaFold D3ZWJ9 1-624 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693458
Promoter ID:EPDNEW_R3983
Type:multiple initiation site
Name:Fam234b_1
Description:family with sequence similarity 234, member B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04168,976,870 - 168,976,930EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306151 AgrOrtholog
BioCyc Gene G2FUF-42631 BioCyc
Ensembl Genes ENSRNOG00000008443 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000068663 ENTREZGENE
  ENSRNOT00000114246 ENTREZGENE
  ENSRNOT00000116621 ENTREZGENE
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot
InterPro FAM234 UniProtKB/Swiss-Prot
  FAM234A_B_beta-prop UniProtKB/Swiss-Prot
  Quinoprotein_ADH-like_supfam UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:362455 UniProtKB/Swiss-Prot
NCBI Gene 362455 ENTREZGENE
PANTHER PROTEIN FAM234B UniProtKB/Swiss-Prot
  PTHR21419 UniProtKB/Swiss-Prot
Pfam Beta-prop_FAM234A_B UniProtKB/Swiss-Prot
PharmGKB KIAA1467 RGD
PhenoGen Fam234b PhenoGen
RatGTEx ENSRNOG00000008443 RatGTEx
Superfamily-SCOP SSF50998 UniProtKB/Swiss-Prot
UniProt A0A8I5ZKC6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHZ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ASE9_RAT UniProtKB/TrEMBL
  A0A8L2QV23 ENTREZGENE, UniProtKB/TrEMBL
  D3ZWJ9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-27 Fam234b  family with sequence similarity 234, member B  RGD1306151  similar to hypothetical protein DKFZp761D0211  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1306151  similar to hypothetical protein DKFZp761D0211   RGD1306151_predicted  similar to hypothetical protein DKFZp761D0211 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1306151_predicted  similar to hypothetical protein DKFZp761D0211 (predicted)  LOC362455_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362455_predicted  similar to hypothetical protein DKFZp761D0211 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL