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Gene: Atp10a (ATPase phospholipid transporting 10A (putative)) Rattus norvegicus

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Symbol:

Atp10a

Name:

ATPase phospholipid transporting 10A (putative)

RGD ID:

1306150

Description:

Predicted to enable glycosylceramide flippase activity and phosphatidylcholine flippase activity. Predicted to be involved in phospholipid translocation and positive regulation of membrane tubulation. Predicted to be located in endoplasmic reticulum. Predicted to be part of phospholipid-translocating ATPase complex. Predicted to be active in plasma membrane. Orthologous to human ATP10A (ATPase phospholipid transporting 10A (putative)); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ATPase, class V, type 10A; LOC365266; phospholipid-transporting ATPase VA; probable phospholipid-transporting ATPase VA

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATP10A (ATPase phospholipid transporting 10A (putative))	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Atp10a (ATPase, class V, type 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atp10a (ATPase phospholipid transporting 10A (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATP10A (ATPase phospholipid transporting 10A (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATP10A (ATPase phospholipid transporting 10A (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atp10a (ATPase phospholipid transporting 10A (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATP10A (ATPase phospholipid transporting 10A (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATP10A (ATPase phospholipid transporting 10A (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atp10a (ATPase phospholipid transporting 10A (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Atp10a (ATPase phospholipid transporting 10A (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	BECN1 (beclin 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ATP10A (ATPase phospholipid transporting 10A (putative))	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Atp10a (ATPase, class V, type 10A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	atp10a (ATPase phospholipid transporting 10A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG33298	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG33298	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	DNF1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder)
Saccharomyces cerevisiae (baker's yeast):	DNF2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder)
Saccharomyces cerevisiae (baker's yeast):	DNF2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)
Caenorhabditis elegans (roundworm):	tat-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tat-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tat-4	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	atp10a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	atp10a	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	118,692,456 - 118,866,117 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	118,692,478 - 118,866,114 (+)	Ensembl				GRCr8
mRatBN7.2	1	109,556,760 - 109,730,440 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	109,556,782 - 109,730,437 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	114,933,084 - 115,106,698 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	123,405,670 - 123,579,304 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	116,653,929 - 116,827,548 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	115,973,343 - 116,141,892 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	115,975,324 - 116,141,892 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	117,144,423 - 117,311,749 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	110,175,554 - 110,360,215 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	103,705,305 - 103,873,921 (+)	NCBI		Celera
RGSC_v3.1	1	110,266,151 - 110,438,558 (+)	NCBI
Cytogenetic Map	1	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autistic disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

atrazine (EXP)

Azoxymethane (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (EXP,ISO)

cocaine (EXP)

copper atom (EXP)

copper(0) (EXP)

decabromodiphenyl ether (EXP)

deoxynivalenol (ISO)

dextran sulfate (ISO)

Dibutyl phosphate (ISO)

dichloroacetic acid (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

fonofos (ISO)

fulvestrant (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

nitrofen (EXP)

organophosphorus compound (EXP)

paraquat (EXP)

parathion (ISO)

phenobarbital (ISO)

progesterone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

terbufos (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lipid translocation (IEA)

lipid transport (IEA)

phospholipid translocation (IBA)

phospholipid transport (IEA)

positive regulation of membrane tubulation (IEA,ISO)

Cellular Component

endoplasmic reticulum (IEA,ISO)

endoplasmic reticulum membrane (IEA)

membrane (IEA)

phospholipid-translocating ATPase complex (IEA,ISO)

plasma membrane (IBA,IEA,ISO)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IEA)

ATPase-coupled intramembrane lipid transporter activity (IBA,IEA)

glycosylceramide flippase activity (IEA,ISO)

magnesium ion binding (IEA)

metal ion binding (IEA)

nucleotide binding (IEA)

phosphatidylcholine flippase activity (IEA,ISO)

phosphatidylcholine floppase activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:21914794

Genomics

Comparative Map Data

Atp10a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	118,692,456 - 118,866,117 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	118,692,478 - 118,866,114 (+)	Ensembl				GRCr8
mRatBN7.2	1	109,556,760 - 109,730,440 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	109,556,782 - 109,730,437 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	114,933,084 - 115,106,698 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	123,405,670 - 123,579,304 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	116,653,929 - 116,827,548 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	115,973,343 - 116,141,892 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	115,975,324 - 116,141,892 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	117,144,423 - 117,311,749 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	110,175,554 - 110,360,215 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	103,705,305 - 103,873,921 (+)	NCBI		Celera
RGSC_v3.1	1	110,266,151 - 110,438,558 (+)	NCBI
Cytogenetic Map	1	q22	NCBI

ATP10A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	25,672,237 - 25,865,088 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	25,677,273 - 25,865,184 (-)	Ensembl			hg38	GRCh38
GRCh37	15	25,923,859 - 26,108,474 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	23,474,952 - 23,659,442 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	15	23,473,512 - 23,659,963	NCBI
Celera	15	4,086,178 - 4,270,059 (-)	NCBI		Celera
Cytogenetic Map	15	q12	NCBI
HuRef	15	4,050,003 - 4,238,595 (-)	NCBI		HuRef
CHM1_1	15	25,873,187 - 26,058,234 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	23,410,024 - 23,605,753 (-)	NCBI		T2T-CHM13v2.0

Atp10a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	58,305,896 - 58,479,783 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	58,305,914 - 58,479,168 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	58,656,142 - 58,830,244 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	58,656,166 - 58,829,420 (+)	Ensembl			mm10	GRCm38
MGSCv37	7	65,913,572 - 66,084,796 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	58,526,201 - 58,696,660 (+)	NCBI		MGSCv36	mm8
Celera	7	55,925,365 - 56,096,428 (+)	NCBI		Celera
Cytogenetic Map	7	B5	NCBI
cM Map	7	33.88	NCBI

Atp10a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955533	3,413,607 - 3,533,834 (+)	Ensembl
ChiLan1.0	NW_004955533	3,413,607 - 3,533,834 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATP10A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	9,439,368 - 9,625,703 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	13,080,832 - 13,266,857 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	4,064,605 - 4,262,695 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	23,090,927 - 23,275,674 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	23,090,927 - 23,275,674 (-)	Ensembl			panPan2	panpan1.1

ATP10A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	34,841,218 - 35,028,718 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	34,841,073 - 35,028,040 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	37,493,146 - 37,680,324 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	35,199,119 - 35,386,437 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	35,199,014 - 35,386,437 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	34,722,125 - 34,909,415 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	34,990,050 - 35,177,719 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	35,138,930 - 35,326,711 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Atp10a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	122,931,799 - 123,131,824 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	40,782,793 - 40,976,524 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	40,868,114 - 40,976,707 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATP10A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	141,570,493 - 141,667,338 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	141,493,551 - 141,667,346 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	157,465,338 - 157,522,099 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATP10A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	56,230,006 - 56,416,398 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	56,230,723 - 56,417,052 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	39,071,634 - 39,313,635 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atp10a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624896	361,936 - 482,072 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624896	361,277 - 482,074 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Atp10a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	140,515,396 - 140,675,229 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Atp10a
1160 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	60
Count of miRNA genes:	56
Interacting mature miRNAs:	57
Transcripts:	ENSRNOT00000023888
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631496	Bp97	Blood pressure QTL 97	3.08		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	115183611	176289080	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	87889942	132889942	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	102780511	182384005	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	101228864	146228864	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	111949780	210707719	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	87785026	142582336	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
9590300	Scort16	Serum corticosterone level QTL 16	4.39	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	112521556	157521556	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	93903998	191260518	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
61399	Tcat1	Tongue tumor resistance QTL 1	3.3		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)	1	108680016	153680016	Rat
631569	Bp93	Blood pressure QTL 93		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	115183611	131244255	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	91302413	136302413	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
724567	Tcas6	Tongue tumor susceptibility QTL 6	6.85		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	102359314	153680016	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	99645382	182701046	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	99645382	221502378	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	111949780	210707719	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	86622262	131622262	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	109493780	193400781	Rat
8694370	Bw154	Body weight QTL 154	8.91	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	1	112521556	157521556	Rat
2317833	Alcrsp19	Alcohol response QTL 19	12.4	0.001	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	110389869	155389869	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	103779152	223964440	Rat
1354623	Rf46	Renal function QTL 46	3.8		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	1	111949780	160574007	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	98879955	208479939	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)	1	92683681	137683681	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	86993904	131993904	Rat
1641897	Alcrsp1	Alcohol response QTL 1			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	110389869	155389869	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	92683681	137683681	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	87558587	132558587	Rat
737977	Bp160	Blood pressure QTL 160		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	97582336	142582336	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	116099376	191260518	Rat
2293142	Bp314	Blood pressure QTL 314			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	101594089	146594089	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	100345976	145345976	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	96717367	160111531	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	111949780	228180370	Rat
61370	Mcs3	Mammary carcinoma susceptibility QTL 3	2.15		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	111404407	142582336	Rat

Markers in Region

D1Rat104

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	109,640,208 - 109,640,360 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	116,056,451 - 116,056,602	NCBI	Rnor6.0
Rnor_5.0	1	117,226,875 - 117,227,026	UniSTS	Rnor5.0
RGSC_v3.4	1	110,268,904 - 110,269,056	RGD	RGSC3.4
RGSC_v3.4	1	110,268,905 - 110,269,056	UniSTS	RGSC3.4
Celera	1	103,788,580 - 103,788,719	UniSTS
RGSC_v3.1	1	110,347,247 - 110,347,399	RGD
RH 2.0 Map	1	640.9	RGD
FHH x ACI Map	1	55.51	RGD
Cytogenetic Map	1	q22	UniSTS

D1Got270

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	109,610,140 - 109,610,333 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	116,026,384 - 116,026,576	NCBI	Rnor6.0
Rnor_5.0	1	117,196,808 - 117,197,000	UniSTS	Rnor5.0
RGSC_v3.4	1	110,238,838 - 110,239,030	UniSTS	RGSC3.4
RGSC_v3.4	1	110,238,838 - 110,239,030	RGD	RGSC3.4
Celera	1	103,758,512 - 103,758,704	UniSTS
RGSC_v3.1	1	110,317,181 - 110,317,373	RGD
Cytogenetic Map	1	q22	UniSTS

BI301372

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	109,580,362 - 109,580,524 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	115,996,612 - 115,996,773	NCBI	Rnor6.0
Rnor_5.0	1	117,167,036 - 117,167,197	UniSTS	Rnor5.0
RGSC_v3.4	1	110,209,066 - 110,209,227	UniSTS	RGSC3.4
Celera	1	103,728,798 - 103,728,959	UniSTS
Cytogenetic Map	1	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	158	91	90	59	92	59	6	356	192	11	137	81	92	31	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001141935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC107909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000080907 ⟹ ENSRNOP00000069976

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	118,692,478 - 118,866,114 (+)	Ensembl
mRatBN7.2 Ensembl	1	109,556,782 - 109,730,437 (+)	Ensembl
Rnor_6.0 Ensembl	1	115,975,324 - 116,141,892 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000146399 ⟹ ENSRNOP00000103615

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	118,692,478 - 118,866,114 (+)	Ensembl

RefSeq Acc Id:

NM_001141935 ⟹ NP_001135407

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	118,692,478 - 118,866,114 (+)	NCBI
mRatBN7.2	1	109,556,782 - 109,730,437 (+)	NCBI
Rnor_6.0	1	115,973,343 - 116,141,892 (+)	NCBI
Rnor_5.0	1	117,144,423 - 117,311,749 (+)	NCBI
RGSC_v3.4	1	110,175,554 - 110,360,215 (+)	RGD
Celera	1	103,705,305 - 103,873,921 (+)	RGD

Sequence:

show sequence

GGTCTGTTCTGAGAAGGGTAAGGAGACCTCTCACCCTGGGGTTGGCAGGGACTAGAAGGGGCAG
AGTTAAACCAGCTGGTGCCAGTTCCCCTAGGGCCTTAAGGGACCTTTGCCTGAGGAGTCAACAT
TTGACTTTGAAAGCAACGGGGGAGTCCTAGGAGCTCCGGGAGGGGAACCCGTGCTGCCGCGCCC
GGGTGGCGGGCAATGATCACCTAGGAGGCTGGCGCGAGCGGCAGAGGAGCCGGGCGCGGCGACA
CGCGGCCATGGAGCGGGAGTCCGCGGCGGCCGAAGAGCCCGCATCCCCGGGGCGGCGGCGTCCT
CGACGAAGGCGCTGGGAGGGCCGGACGCGCACGGTGCGCTCCAACCTGCTGCCGTCCCTGGGCA
CCGAAGACTCCACTGCCGGAGCCTCCAAGGGCGAACGGCTGCTGATGCGCGGCTGCATCCAGCA
CCTGGCCGACAACCGCCTCAAGACCACCAAGTACACTCTGCTGTCCTTCTTGCCCAAGAATCTC
TTCGAACAGTTCCACCGCCTAGCCAATGTGTACTTCGTCTTCATCGCGCTACTCAACTTTGTGC
CGGCAGTGAACGCTTTCCAGCCGGTCCTGGCACTGGCGCCTGTGCTCTTTATTCTGGCGGTCAC
TGCCATCAAGGACCTGTGGGAGGACTACAGCCGCCACCGTTCGGACCACGAAATCAACCACCTG
GGCTGCCTTGTCTTCAGCAGGGAAGAAAAGAAGTATGTGAATCGATACTGGAAAGAAATCCGAG
TGGGCGACTTTGTCCGTCTTTGCTGCAATGAAATCATACCTGCGGACATTTTGCTGCTGTCATC
CAGTGACCCTGATGGGTTGTGCCACATCGAGACTGCTAACCTGGATGGAGAGACCAACCTGAAG
CGGCGGCAAGTGGTCCGTGGCTTCTCGGAGCTTGTCTCTGAATTCAATCCCTTAACGTTCACCA
GCGTAATCGAATGTGAGAAGCCAAACAATGACCTGAGTAGGTTTCGTGGCTGCATAATCCACAG
CAATGGGGAGAAGGCTGGGCTGCATAAGGAAAACTTGCTGCTTCGAGGGTGCACCATCAGAAAC
ACAGAAGCAGTGGCTGGGATTGTCATCTATGCAGGACATGAAACCAAAGCCCTCCTGAACAATA
GTGGGCCCCGCTACAAGCGCAGCCAGCTTGAAAGGCAGATGAACTGTGATGTCCTCTGGTGTGT
CCTTCTCCTCGTTTGTATATCTCTATTTTCAGCAGTTGGACATGGATTGTGGGTTCGGCGCTAT
CAAGAGAAAAAAGCACTGTTTGATGTTCCCGAGTCTGATGGCAGCTCTTTATCCCCAGCCACTG
CTGCAGTTTACTCGTTTTTGACAATGATAATTGTTCTGCAGGTTTTGATTCCAATTTCCTTATA
TGTTTCCATTGAAATTGTTAAAGTGTGTCAAGTATACTTCATTAACCAAGATATAGAGCTGTAC
GATGAAGAGACAGATTCACAGCTGCAGTGCCGAGCTCTGAACATAACAGAAGACTTAGGGCAGA
TAAAATACATCTTCTCAGACAAAACTGGCACATTAACTGAGAACAAGATGGTCTTTCGAAGATG
CACTGTGTCCGGCATAGAATATTCTCATGATGCTAATGCCCAGCGACTGGCCAAGTATCAAGAG
GCGGACTCAGAAGAGGAGGAAATGGTGTCCAAGGTGGGCCCAATATCCCACCGTGGCAGCACTG
GGAGCCATCAGAGCATCTGGATGACTCATAAGACCCAGAGTATCAAGTCCCACCGGCGTACAGG
CAGTCGGGCTGAGGCCAAGAGAGCCAGCATGCTGTCTAAGCACACTGCCTTCAGCAGCCCCATG
GAGAAAGACATTACCCCTGACCCCAAGCTGCTGGAGAAGGTGAGCGAGTGTGACCGGTTCCTCT
CCATTGCAAGGCACCAGGAGCACCCTCTGGCCCATCTTTCACCAGAGCTGTCTGATGTTTTTGA
TTTCTTCATCGCACTCACCATCTGCAATACAGTAGTTGTCACCTCTCCAGACCAGCCACGACAA
AAGGTAAGAGTGAGGTTTGAGCTGAAGTCCCCAGTGAAGACCATAGAAGATTTCCTTCGGAAGT
TCACACCCAGCCGCCTGGCTTCTGGCTGCAGCAGTATCGGGAACCTCACCAACAATAAATCCAG
CAACAAATCTGGATCAACTTTTCTGCCCAGCCTGTCTCAGGACAACATGCTTCTCAGGCTGGAG
GAGAGGCTAGGTCAAACAGCGCCAGTCATTGCCAGCAATGGCTATGCCAGCCAGGCAAGCCAGG
CGGAAAGCTGGACCTCAGAGTGCACCTCAGAGCAGAAGTGTCCAGGGGACCAGAGGGAGCAGCA
AGAGGGGGAGCTTCGATATGAGGCTGAGAGCCCAGATGAGGCTGCGCTGGTGTATGCAGCCAAA
GCCTATAACTGTGCACTGGTGGACCGGCTTCACGACCAGGTGTCTGTGGAGTTGCCCCACCTAG
GCAGGCTCACCTTTGAGCTGCTGCACACACTTGGCTTCGACTCCATCCGCAAGAGGATGTCAGT
GGTGATCCGACACCCACTGACTGACGAGATCAATGTGTACACCAAGGGGGCTGATTCAGTGGTC
ATGGACCTTCTGCTGCCCTGTTCCTCAGATGACGCCAGAGGAAGGCATCAGAAAAAGATCAGGA
GTAAAACACAAAATTACCTCAACCTTTATGCAGTAGAAGGCCTGCGCACCCTGTGCATTGCCAA
GAGGGTTCTGAGCAAAGAAGAATATGCCTGCTGGTTGCAGAGCCACATAGAAGCTGAGACATCT
GTGGAGAGCCGTGAGGAGCTCCTCTTCCAGTCTGCTGTTCGCCTGGAGACGAACTTGCACCTGC
TGGGTGCCACTGGGATAGAAGACCGCCTTCAGGATGGAGTACCTGAAACCATTGCCAAATTACG
ACAAGCTGGCCTGCAGATTTGGGTTCTCACAGGTGACAAACAAGAAACAGCCATTAACATTGCA
TATGCCTGCAAATTGCTGGACCATGGTGAAGAGGTCATCACACTGAATGCTGATTCTAGGGAAG
CATGTGCAGCCCTGCTGGACCAATGCCTCTGTTATGTGCAATCCAGAAACTCTAGAAGCGTCCC
TCAGAACTCTGAAAGCAGCTTCAGTGTGGGGTTCTCTTTCAACCCAGCCTCCACATCCACTGAC
TCGAGCCCCAGCCCAAGCCTTGTGATTGATGGGAGAAGTCTGGCCTATGCCCTTGAGAAAAGCC
TGGAGGACAAATTTCTTTTCCTTGCCAAGCAGTGTCGCTCCGTCCTCTGCTGCCGATCGACGCC
TTTGCAGAAAAGCATGGTGGTGAAGCTTGTCAGAAACAAGCTCAAGGCCATGACCCTGGCCATA
GGTGATGGGGCCAATGATGTCAGCATGATCCAGGTGGCAGATGTAGGCGTGGGGATCTCAGGCC
AGGAAGGCATGCAGGCTGTGATGGCAAGTGACTTTGCAGTGCCAAGATTCCGATACCTGGAGAG
ACTTCTAATCGTTCATGGACACTGGTGCTACTCCAGACTGGCCAACATGGTGCTGTATTTCTTC
TACAAAAATACAATGTTTGTGGGTCTCTTGTTTTGGTTCCAGTTTTACTGTGGCTTTTCTGCAT
CTGCCATGATTGATCAGTGGTATCTGATTTTCTTCAATCTGCTCTTCTCATCGCTTCCTCAGCT
GGTAACTGGGGTGCTGGATAAAGATGTTCCAGCTGACATGTTGCTGAGAAAGCCACAGCTTTAC
AAGAGTGGCCAAAACATGGAGGAATACAGTCCACGAGCATTCTGGTTAAACATGGTGGATGCTG
CCTTCCAAAGCCTGGTCTGCTTTTTCATTCCCTATCTGGCCTACTATGACTCCGATGTGGATGT
ATTTACCTGGGGGACCCCTGTCACAGCAATAGCATTGTTCACCTTCCTGCTGCACCTGGGTATT
GAAACCAAAACCTGGACCTGGCTCAACTGGTTAGCCTGTGGCTTCAGTACCTTTTTGTTTTTCT
CCGTGGCTCTAATTTACAACACTTCCTGTGCCACATGCTATCCTCCATCTAACCCTTACTGGAC
CATGCCGACATTACTGGGAGACCCTCTGTTCTACTTGACTTGTCTCATCGCACCTGTTGCTGCA
TTGCTGCCCAGATTGTTTTTCAAAGCCCTCCAGGGGAGCCTTTTCCCCACCCAACTCCAGCTAG
GACGCCAGTTGGCCAAGAAATCCCTCAACAAGTTCAGCGTTCCCAAAGAGACTTTTGCTCAGGG
ACAACCACCTGGACACACAGAACCTGAGCTATCAGAAAGGAAGGCCATGGGACCTTTTGAGTCT
CTCCCTAGAGACTGTGCCTCTCAAGCTTCCCAGTTCACACAGCAGCTGGCCTGTTCCCCAGAGG
CCAGTGGGGAGCCCAGTGCAGTGGATACAAACATGCCACTGAGAGAGAACACCTTGCTGGAAGG
ACTTGGCTCTCAGGCCTCAGGGTCTGCTATGCCCAGAGAGGCTATTTCAGAAGACTGTCCTGGG
GACTCCAAGAGGAAATCCACCAGTGCTAGTCAAACAGCCCCCTTGTCGTCACTCTTCCATCTGC
CCAGCTTTGGCTCACTAAACTGGATCTCCTCACTATCACTGGCCAGTGGTCTGGGAAGTGTCTT
GCAATTGTCCAGAAGTAGTTTACAGATGGACAAGCAGGATGGTGAGTTCCTGTCCAACCCACCA
CAACCAGATCAGGACCTGCACAACTTACAGGGACAAGTTACAGGCTACTTCTAGTATCACCTCC
AAAGGGCCACAGCCAATTGTGGTGACAAAGAAATCCTTGAAATGGCCTTTTATTTTATGTAACA
AATGTTAATGTTATTTATGTTTATTATTTGCACAGAAGAGTTCTAGAAAGATGTATTTTTTAAA
TGTTTCCAAGACATATATAGGAAACCAGAGGTACCAAAAAAGAAAGTTTATTTTTTAAAAGTTC
TAAGTAGAGTATACTTATGAAAAATAACACATATCTTTATCTATCTATATATAAAGTTTAAAGA
AGAGTGACACTTAAAAGGTGTGTCGAGATTTATTTTTTCATCTCATTTTGTAAGGAAAAGCAAT
ATGCATTGTTTCTTCAACACACATGACCCTTGCTTTCTGCAGGAAGGCATAACCATGTGGCCAA
TCCCGTAAAGCCTGGGGTAGCAGTGGCGGGTGTGGAGACAGGGCAGGGAGGAAAGAGGACAGAG
AGAAGGGCGTGTGGCCTTTGAGGCAAATACCTCCATTGGCTTCCAATGTTACCATCAGTGAACA
GGACAGTGAAACCTTGAGAAAAACCCATGTGAAATCCCTGCCAACACTCAAACTTCTGGGCAGG
CATTTCATTAGGTTCACCTCATAGGTTTGACAGCTCCATTGTTGTGTGTATTTCTTGCTAAAAT
CATCACAGGCAATAAACAACCCCCCACTTTGC

hide sequence

RefSeq Acc Id:

XM_039084992 ⟹ XP_038940920

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	118,694,447 - 118,866,117 (+)	NCBI
mRatBN7.2	1	109,558,751 - 109,730,035 (+)	NCBI

RefSeq Acc Id:

XM_039084993 ⟹ XP_038940921

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	118,692,456 - 118,866,117 (+)	NCBI
mRatBN7.2	1	109,556,760 - 109,730,035 (+)	NCBI

RefSeq Acc Id:

XM_039084995 ⟹ XP_038940923

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	118,692,695 - 118,866,117 (+)	NCBI
mRatBN7.2	1	109,556,996 - 109,730,035 (+)	NCBI

RefSeq Acc Id:

XM_039085001 ⟹ XP_038940929

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	118,828,452 - 118,866,117 (+)	NCBI
mRatBN7.2	1	109,692,777 - 109,730,035 (+)	NCBI

RefSeq Acc Id:

XM_063269214 ⟹ XP_063125284

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	118,692,501 - 118,864,663 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001135407	(Get FASTA)	NCBI Sequence Viewer
	NP_001426774	(Get FASTA)	NCBI Sequence Viewer
	NP_001426775	(Get FASTA)	NCBI Sequence Viewer
	XP_038940920	(Get FASTA)	NCBI Sequence Viewer
	XP_038940921	(Get FASTA)	NCBI Sequence Viewer
	XP_038940923	(Get FASTA)	NCBI Sequence Viewer
	XP_038940929	(Get FASTA)	NCBI Sequence Viewer
	XP_063125284	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI07910	(Get FASTA)	NCBI Sequence Viewer
	EDL86445	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069976
	ENSRNOP00000069976.2
	ENSRNOP00000103615.1

RefSeq Acc Id:

NP_001135407 ⟸ NM_001141935

- UniProtKB:

A0A0G2JWQ8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MERESAAAEEPASPGRRRPRRRRWEGRTRTVRSNLLPSLGTEDSTAGASKGERLLMRGCIQHLA
DNRLKTTKYTLLSFLPKNLFEQFHRLANVYFVFIALLNFVPAVNAFQPVLALAPVLFILAVTAI
KDLWEDYSRHRSDHEINHLGCLVFSREEKKYVNRYWKEIRVGDFVRLCCNEIIPADILLLSSSD
PDGLCHIETANLDGETNLKRRQVVRGFSELVSEFNPLTFTSVIECEKPNNDLSRFRGCIIHSNG
EKAGLHKENLLLRGCTIRNTEAVAGIVIYAGHETKALLNNSGPRYKRSQLERQMNCDVLWCVLL
LVCISLFSAVGHGLWVRRYQEKKALFDVPESDGSSLSPATAAVYSFLTMIIVLQVLIPISLYVS
IEIVKVCQVYFINQDIELYDEETDSQLQCRALNITEDLGQIKYIFSDKTGTLTENKMVFRRCTV
SGIEYSHDANAQRLAKYQEADSEEEEMVSKVGPISHRGSTGSHQSIWMTHKTQSIKSHRRTGSR
AEAKRASMLSKHTAFSSPMEKDITPDPKLLEKVSECDRFLSIARHQEHPLAHLSPELSDVFDFF
IALTICNTVVVTSPDQPRQKVRVRFELKSPVKTIEDFLRKFTPSRLASGCSSIGNLTNNKSSNK
SGSTFLPSLSQDNMLLRLEERLGQTAPVIASNGYASQASQAESWTSECTSEQKCPGDQREQQEG
ELRYEAESPDEAALVYAAKAYNCALVDRLHDQVSVELPHLGRLTFELLHTLGFDSIRKRMSVVI
RHPLTDEINVYTKGADSVVMDLLLPCSSDDARGRHQKKIRSKTQNYLNLYAVEGLRTLCIAKRV
LSKEEYACWLQSHIEAETSVESREELLFQSAVRLETNLHLLGATGIEDRLQDGVPETIAKLRQA
GLQIWVLTGDKQETAINIAYACKLLDHGEEVITLNADSREACAALLDQCLCYVQSRNSRSVPQN
SESSFSVGFSFNPASTSTDSSPSPSLVIDGRSLAYALEKSLEDKFLFLAKQCRSVLCCRSTPLQ
KSMVVKLVRNKLKAMTLAIGDGANDVSMIQVADVGVGISGQEGMQAVMASDFAVPRFRYLERLL
IVHGHWCYSRLANMVLYFFYKNTMFVGLLFWFQFYCGFSASAMIDQWYLIFFNLLFSSLPQLVT
GVLDKDVPADMLLRKPQLYKSGQNMEEYSPRAFWLNMVDAAFQSLVCFFIPYLAYYDSDVDVFT
WGTPVTAIALFTFLLHLGIETKTWTWLNWLACGFSTFLFFSVALIYNTSCATCYPPSNPYWTMP
TLLGDPLFYLTCLIAPVAALLPRLFFKALQGSLFPTQLQLGRQLAKKSLNKFSVPKETFAQGQP
PGHTEPELSERKAMGPFESLPRDCASQASQFTQQLACSPEASGEPSAVDTNMPLRENTLLEGLG
SQASGSAMPREAISEDCPGDSKRKSTSASQTAPLSSLFHLPSFGSLNWISSLSLASGLGSVLQL
SRSSLQMDKQDGEFLSNPPQPDQDLHNLQGQVTGYF

hide sequence

Ensembl Acc Id:

ENSRNOP00000069976 ⟸ ENSRNOT00000080907

RefSeq Acc Id:	XP_038940921 ⟸ XM_039084993
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038940923 ⟸ XM_039084995
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JWQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038940920 ⟸ XM_039084992
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038940929 ⟸ XM_039085001
- Peptide Label:	isoform X3
- UniProtKB:	Q32Q02 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125284 ⟸ XM_063269214
- Peptide Label:	isoform X2
- UniProtKB:	A6KD43 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000103615 ⟸ ENSRNOT00000146399

Protein Domains

P-type ATPase C-terminal P-type ATPase N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JWQ8-F1-model_v2	AlphaFold	A0A0G2JWQ8	1-1471	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690087

Promoter ID:

EPDNEW_R612

Type:

single initiation site

Name:

Atp10a_1

Description:

ATPase phospholipid transporting 10A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	115,975,378 - 115,975,438	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306150	AgrOrtholog
BioCyc Gene	G2FUF-59425	BioCyc
Ensembl Genes	ENSRNOG00000056228	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000080907	ENTREZGENE
	ENSRNOT00000080907.3	UniProtKB/TrEMBL
	ENSRNOT00000146399.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.1110.10	UniProtKB/TrEMBL
	3.40.50.1000	UniProtKB/TrEMBL
	Calcium-transporting ATPase, cytoplasmic transduction domain A	UniProtKB/TrEMBL
	Calcium-transporting ATPase, transmembrane domain	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7454243	IMAGE-MGC_LOAD
InterPro	ATPase_P-typ_cyto_domN	UniProtKB/TrEMBL
	ATPase_P-typ_ion-transptr	UniProtKB/TrEMBL
	ATPase_P-typ_P_site	UniProtKB/TrEMBL
	ATPase_P-typ_Plipid-transl	UniProtKB/TrEMBL
	ATPase_P-typ_TM_dom	UniProtKB/TrEMBL
	ATPase_P-typ_transduc_dom_A	UniProtKB/TrEMBL
	HAD-like_sf	UniProtKB/TrEMBL
	HAD_sf	UniProtKB/TrEMBL
	P-type_ATPase_N	UniProtKB/TrEMBL
	P_typ_ATPase_c	UniProtKB/TrEMBL
	P_typ_ATPase_HD_dom	UniProtKB/TrEMBL
KEGG Report	rno:365266	UniProtKB/TrEMBL
MGC_CLONE	MGC:125225	IMAGE-MGC_LOAD
NCBI Gene	365266	ENTREZGENE
PANTHER	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	UniProtKB/TrEMBL
	PTHR24092:SF81	UniProtKB/TrEMBL
Pfam	Cation_ATPase	UniProtKB/TrEMBL
	PhoLip_ATPase_C	UniProtKB/TrEMBL
	PhoLip_ATPase_N	UniProtKB/TrEMBL
PhenoGen	Atp10a	PhenoGen
PRINTS	CATATPASE	UniProtKB/TrEMBL
PROSITE	ATPASE_E1_E2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000056228	RatGTEx
Superfamily-SCOP	ATPase_cation_domN	UniProtKB/TrEMBL
	HAD-like_dom	UniProtKB/TrEMBL
	SSF81653	UniProtKB/TrEMBL
	SSF81665	UniProtKB/TrEMBL
UniProt	A0A0G2JWQ8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LNT1_RAT	UniProtKB/TrEMBL
	A6KD43	ENTREZGENE, UniProtKB/TrEMBL
	Q32Q02	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Atp10a	ATPase phospholipid transporting 10A (putative)	Atp10a	ATPase, class V, type 10A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Atp10a	ATPase, class V, type 10A			Symbol and Name updated	1299863	APPROVED
2006-03-07	Atp10a	ATPase, class V, type 10A	Atp10a_predicted	ATPase, class V, type 10A (predicted)	Symbol and Name status set to approved	1299863	APPROVED
2005-01-12	Atp10a_predicted	ATPase, class V, type 10A (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD