Stxbp6 (syntaxin binding protein 6) - Rat Genome Database

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Gene: Stxbp6 (syntaxin binding protein 6) Rattus norvegicus
Analyze
Symbol: Stxbp6
Name: syntaxin binding protein 6
RGD ID: 1306117
Description: Predicted to be involved in regulation of SNARE complex assembly. Predicted to be located in membrane. Orthologous to human STXBP6 (syntaxin binding protein 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Amisyn; LOC362734; syntaxin binding protein 6 (amisyn); syntaxin-binding protein 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8667,647,721 - 67,884,369 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl667,650,556 - 67,884,725 (-)EnsemblGRCr8
mRatBN7.2661,920,756 - 62,157,405 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl661,920,756 - 62,158,024 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx662,284,322 - 62,508,459 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0662,599,438 - 62,823,576 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0662,048,557 - 62,266,257 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0665,086,483 - 65,319,527 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl665,089,318 - 65,319,527 (-)Ensemblrn6Rnor6.0
Rnor_5.0674,668,707 - 74,901,751 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4664,249,917 - 64,490,471 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera660,910,136 - 61,134,498 (-)NCBICelera
RGSC_v3.1664,252,939 - 64,917,595 (-)NCBI
Cytogenetic Map6q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
2-palmitoylglycerol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
carmustine  (ISO)
chlordecone  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dimethylarsinic acid  (EXP)
dioxygen  (ISO)
diquat  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
heroin  (ISO)
hydroquinone  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methidathion  (ISO)
methimazole  (EXP)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
nitrofen  (EXP)
paracetamol  (ISO)
pentanal  (ISO)
phenformin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (EXP)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
membrane  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12145319   PMID:16033762   PMID:25468996   PMID:32467162  


Genomics

Comparative Map Data
Stxbp6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8667,647,721 - 67,884,369 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl667,650,556 - 67,884,725 (-)EnsemblGRCr8
mRatBN7.2661,920,756 - 62,157,405 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl661,920,756 - 62,158,024 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx662,284,322 - 62,508,459 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0662,599,438 - 62,823,576 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0662,048,557 - 62,266,257 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0665,086,483 - 65,319,527 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl665,089,318 - 65,319,527 (-)Ensemblrn6Rnor6.0
Rnor_5.0674,668,707 - 74,901,751 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4664,249,917 - 64,490,471 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera660,910,136 - 61,134,498 (-)NCBICelera
RGSC_v3.1664,252,939 - 64,917,595 (-)NCBI
Cytogenetic Map6q21NCBI
STXBP6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381424,809,454 - 25,050,147 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1424,809,454 - 25,050,333 (-)Ensemblhg38GRCh38
GRCh371425,278,660 - 25,519,353 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361424,351,133 - 24,588,935 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341424,351,143 - 24,588,935NCBI
Celera145,145,717 - 5,383,553 (-)NCBICelera
Cytogenetic Map14q12NCBI
HuRef145,395,405 - 5,633,124 (-)NCBIHuRef
CHM1_11425,280,175 - 25,518,046 (-)NCBICHM1_1
T2T-CHM13v2.01419,007,660 - 19,248,390 (-)NCBIT2T-CHM13v2.0
Stxbp6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391244,899,267 - 45,121,248 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1244,899,267 - 45,121,492 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381244,852,484 - 45,075,118 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1244,852,484 - 45,074,709 (-)Ensemblmm10GRCm38
MGSCv371245,953,473 - 46,175,470 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361245,722,772 - 45,944,769 (-)NCBIMGSCv36mm8
Celera1246,183,223 - 46,404,169 (-)NCBICelera
Cytogenetic Map12B3NCBI
cM Map1220.71NCBI
Stxbp6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540935,168,453 - 35,358,637 (+)Ensembl
ChiLan1.0NW_00495540935,096,888 - 35,358,571 (+)NCBIChiLan1.0ChiLan1.0
STXBP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21526,156,926 - 26,397,853 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11425,373,418 - 25,614,344 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,578,254 - 5,819,152 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11423,701,597 - 23,942,355 (-)NCBIPanPan1.1PanPan1.1panPan2
STXBP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,638,376 - 4,877,589 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl84,641,460 - 4,877,030 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha84,559,579 - 4,804,661 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.084,749,177 - 4,988,271 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl84,749,209 - 4,988,313 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.184,437,959 - 4,676,664 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.084,501,118 - 4,739,548 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.084,763,295 - 5,002,153 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Stxbp6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864036,744,237 - 36,988,698 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936494250,126 - 438,956 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936494250,131 - 494,599 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STXBP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl774,294,948 - 74,552,433 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1774,294,859 - 74,551,370 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2779,440,176 - 79,715,501 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STXBP6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1241,761,659 - 2,012,533 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl241,758,660 - 2,012,322 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603613,464,630 - 13,716,905 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stxbp6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248207,450,857 - 7,724,304 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248207,450,825 - 7,724,175 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Stxbp6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1758,462,149 - 58,673,001 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Stxbp6
1731 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:52
Interacting mature miRNAs:62
Transcripts:ENSRNOT00000005618
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)66345744194939581Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)66303731995934232Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)66345744194939581Rat

Markers in Region
BF386377  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2662,038,859 - 62,039,025 (+)MAPPERmRatBN7.2
Rnor_6.0665,202,118 - 65,202,283NCBIRnor6.0
Rnor_5.0674,784,342 - 74,784,507UniSTSRnor5.0
RGSC_v3.4664,367,946 - 64,368,111UniSTSRGSC3.4
Celera661,016,852 - 61,017,017UniSTS
RH 3.4 Map6454.4UniSTS
Cytogenetic Map6q21UniSTS
RH141557  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2661,923,749 - 61,923,967 (+)MAPPERmRatBN7.2
Rnor_6.0665,089,477 - 65,089,694NCBIRnor6.0
Rnor_5.0674,671,701 - 74,671,918UniSTSRnor5.0
RGSC_v3.4664,250,076 - 64,250,293UniSTSRGSC3.4
Celera660,910,295 - 60,910,512UniSTS
RH 3.4 Map6454.4UniSTS
Cytogenetic Map6q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 68 165 91 90 59 64 59 6 337 166 12 146 88 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000005618   ⟹   ENSRNOP00000005618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl667,651,194 - 67,884,338 (-)Ensembl
mRatBN7.2 Ensembl661,923,491 - 62,157,278 (-)Ensembl
Rnor_6.0 Ensembl665,089,318 - 65,319,527 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094222   ⟹   ENSRNOP00000078765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl667,650,556 - 67,884,725 (-)Ensembl
mRatBN7.2 Ensembl661,920,756 - 62,158,024 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095611   ⟹   ENSRNOP00000088139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl667,655,906 - 67,884,338 (-)Ensembl
mRatBN7.2 Ensembl661,928,941 - 62,157,405 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111198   ⟹   ENSRNOP00000080587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl661,920,756 - 62,157,022 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116561   ⟹   ENSRNOP00000088446
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl667,656,208 - 67,884,338 (-)Ensembl
mRatBN7.2 Ensembl661,928,977 - 62,157,405 (-)Ensembl
RefSeq Acc Id: NM_001191872   ⟹   NP_001178801
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8667,650,556 - 67,884,338 (-)NCBI
mRatBN7.2661,923,591 - 62,157,387 (-)NCBI
Rnor_6.0665,089,318 - 65,319,527 (-)NCBI
Rnor_5.0674,668,707 - 74,901,751 (-)NCBI
Celera660,910,136 - 61,134,498 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764658   ⟹   XP_008762880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8667,647,721 - 67,884,188 (-)NCBI
mRatBN7.2661,920,756 - 62,157,405 (-)NCBI
Rnor_6.0665,086,483 - 65,319,346 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063262101   ⟹   XP_063118171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8667,647,721 - 67,884,369 (-)NCBI
RefSeq Acc Id: NP_001178801   ⟸   NM_001191872
- UniProtKB: A0A8I5ZQ52 (UniProtKB/TrEMBL),   A0A8I6A7D8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762880   ⟸   XM_008764658
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQ52 (UniProtKB/TrEMBL),   A0A8I6A7D8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005618   ⟸   ENSRNOT00000005618
Ensembl Acc Id: ENSRNOP00000080587   ⟸   ENSRNOT00000111198
Ensembl Acc Id: ENSRNOP00000088446   ⟸   ENSRNOT00000116561
Ensembl Acc Id: ENSRNOP00000088139   ⟸   ENSRNOT00000095611
Ensembl Acc Id: ENSRNOP00000078765   ⟸   ENSRNOT00000094222
RefSeq Acc Id: XP_063118171   ⟸   XM_063262101
- Peptide Label: isoform X2
Protein Domains
v-SNARE coiled-coil homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZCI5-F1-model_v2 AlphaFold D3ZCI5 1-210 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694578
Promoter ID:EPDNEW_R5103
Type:single initiation site
Name:Stxbp6_1
Description:syntaxin binding protein 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0665,319,545 - 65,319,605EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306117 AgrOrtholog
BioCyc Gene G2FUF-37682 BioCyc
Ensembl Genes ENSRNOG00000004198 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005618 ENTREZGENE
  ENSRNOT00000005618.7 UniProtKB/TrEMBL
  ENSRNOT00000094222.2 UniProtKB/TrEMBL
  ENSRNOT00000095611.2 UniProtKB/TrEMBL
  ENSRNOT00000116561.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
  2.30.29.90 UniProtKB/TrEMBL
InterPro Sec3-PIP2_bind UniProtKB/TrEMBL
  STXBP6_PH UniProtKB/TrEMBL
  STXBP6_SNARE UniProtKB/TrEMBL
  V_SNARE_CC UniProtKB/TrEMBL
NCBI Gene 362734 ENTREZGENE
PANTHER EXOCYST COMPLEX COMPONENT 1 ISOFORM X1 UniProtKB/TrEMBL
  SEC3/SYNTAXIN-RELATED UniProtKB/TrEMBL
Pfam Sec3-PIP2_bind UniProtKB/TrEMBL
  Synaptobrevin UniProtKB/TrEMBL
PhenoGen Stxbp6 PhenoGen
PROSITE V_SNARE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004198 RatGTEx
SMART Sec3-PIP2_bind UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/TrEMBL
UniProt A0A8I5ZLL4_RAT UniProtKB/TrEMBL
  A0A8I5ZQ52 ENTREZGENE
  A0A8I6A7D8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AIW8_RAT UniProtKB/TrEMBL
  D3ZCI5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-27 Stxbp6  syntaxin binding protein 6  Stxbp6  syntaxin binding protein 6 (amisyn)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Stxbp6  syntaxin binding protein 6 (amisyn)   Stxbp6_predicted  syntaxin binding protein 6 (amisyn) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Stxbp6_predicted  syntaxin binding protein 6 (amisyn) (predicted)      Symbol and Name status set to approved 70820 APPROVED