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Gene: Cc2d1a (coiled-coil and C2 domain containing 1A) Rattus norvegicus

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Symbol:

Cc2d1a

Name:

coiled-coil and C2 domain containing 1A

RGD ID:

1306108

Description:

Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of snRNA transcription by RNA polymerase II and regulation of postsynapse assembly. Predicted to act upstream of or within several processes, including apical dendrite arborization; long-term synaptic potentiation; and regulation of respiratory gaseous exchange by nervous system process. Located in nucleus. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 3 and intellectual disability. Orthologous to human CC2D1A (coiled-coil and C2 domain containing 1A); INTERACTS WITH 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil; allethrin.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

coiled-coil and C2 domain-containing protein 1A; five prime repressor element under dual repression-binding protein 1; five repressor element under dual repression-binding protein 1; FRE under dual repression-binding protein 1; freud-1; LOC288908; RGD1306108; similar to cDNA sequence BC016188

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CC2D1A (coiled-coil and C2 domain containing 1A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cc2d1a (coiled-coil and C2 domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cc2d1a (coiled-coil and C2 domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CC2D1A (coiled-coil and C2 domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CC2D1A (coiled-coil and C2 domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cc2d1a (coiled-coil and C2 domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CC2D1A (coiled-coil and C2 domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CC2D1A (coiled-coil and C2 domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cc2d1a (coiled-coil and C2 domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cc2d1a (coiled-coil and C2 domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TRAV13-1 (T cell receptor alpha variable 13-1)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Cc2d1a (coiled-coil and C2 domain containing 1A)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CC2D1A (coiled-coil and C2 domain containing 1A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CC2D1A (coiled-coil and C2 domain containing 1A)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cc2d1a (coiled-coil and C2 domain containing 1A)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y37H9A.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y37H9A.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	l(2)gd1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	l(2)gd1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cc2d1a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cc2d1a	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	40,916,587 - 40,931,702 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	40,916,532 - 40,931,701 (+)	Ensembl				GRCr8
mRatBN7.2	19	24,011,897 - 24,026,937 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	24,011,938 - 24,026,936 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	30,832,782 - 30,847,779 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	31,487,192 - 31,502,189 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	33,709,951 - 33,724,961 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	25,246,912 - 25,261,965 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	25,246,913 - 25,261,946 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	36,224,012 - 36,239,076 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	25,695,784 - 25,710,783 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	23,560,276 - 23,575,275 (+)	NCBI		Celera
RGSC_v3.1	19	25,700,609 - 25,715,608 (+)	NCBI
Cytogenetic Map	19	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive intellectual developmental disorder 3 (ISO)

ciliopathy (ISO)

Developmental Disabilities (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Smith-Magenis syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

allethrin (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

butanal (ISO)

cisplatin (ISO)

clobetasol (ISO)

coumarin (ISO)

cyhalothrin (EXP)

cypermethrin (EXP)

DDE (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fenthion (ISO)

fenvalerate (EXP)

FR900359 (ISO)

indometacin (ISO)

ivermectin (ISO)

methidathion (ISO)

methimazole (EXP)

paracetamol (ISO)

pirinixic acid (ISO)

pyrethrins (EXP)

rac-lactic acid (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

thapsigargin (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triticonazole (EXP)

troglitazone (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apical dendrite arborization (ISO)

dendrite arborization (ISO)

DNA-templated transcription (IEA)

endosome organization (ISO)

negative regulation of snRNA transcription by RNA polymerase II (IEA,ISO)

negative regulation of transcription by RNA polymerase II (ISO)

positive regulation of canonical NF-kappaB signal transduction (ISO)

regulation of postsynapse assembly (IEA,ISO)

regulation of respiratory gaseous exchange (ISO)

regulation of respiratory gaseous exchange by nervous system process (ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

centrosome (IEA)

cytoplasm (IEA)

cytosol (IEA,ISO)

endosome membrane (IEA,ISO)

glutamatergic synapse (IEA,ISO)

nucleus (IBA,IDA,IEA)

synapse (IEA,ISO)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IEA,ISO)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Freud-2/CC2D1B mediates dual repression of the serotonin-1A receptor gene.	Hadjighassem MR, etal., Eur J Neurosci. 2011 Jan;33(2):214-23. doi: 10.1111/j.1460-9568.2010.07498.x. Epub 2010 Dec 14.
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Positive association of CC2D1A and CC2D2A gene haplotypes with mental retardation in a Han Chinese population.	Shi ZY, etal., DNA Cell Biol. 2012 Jan;31(1):80-7. doi: 10.1089/dna.2011.1253. Epub 2011 Oct 24.
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:12761501	PMID:12917378	PMID:15057822	PMID:15489334	PMID:19056867	PMID:19647046	PMID:19946888	PMID:20026183	PMID:23533145	PMID:24946016	PMID:25468996	PMID:27150226

Genomics

Comparative Map Data

Cc2d1a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	40,916,587 - 40,931,702 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	40,916,532 - 40,931,701 (+)	Ensembl				GRCr8
mRatBN7.2	19	24,011,897 - 24,026,937 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	24,011,938 - 24,026,936 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	30,832,782 - 30,847,779 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	31,487,192 - 31,502,189 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	33,709,951 - 33,724,961 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	25,246,912 - 25,261,965 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	25,246,913 - 25,261,946 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	36,224,012 - 36,239,076 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	25,695,784 - 25,710,783 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	23,560,276 - 23,575,275 (+)	NCBI		Celera
RGSC_v3.1	19	25,700,609 - 25,715,608 (+)	NCBI
Cytogenetic Map	19	q11	NCBI

CC2D1A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	13,906,201 - 13,930,879 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	13,906,160 - 13,930,884 (+)	Ensembl			hg38	GRCh38
GRCh37	19	14,017,014 - 14,041,692 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	13,878,052 - 13,902,692 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	13,910,701 - 13,935,438 (+)	NCBI		Celera
Cytogenetic Map	19	p13.12	NCBI
HuRef	19	13,588,253 - 13,612,989 (+)	NCBI		HuRef
CHM1_1	19	14,017,664 - 14,042,297 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	14,032,358 - 14,057,039 (+)	NCBI		T2T-CHM13v2.0

Cc2d1a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	84,859,457 - 84,874,546 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	84,859,457 - 84,874,565 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	84,132,828 - 84,147,917 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	84,132,828 - 84,147,936 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	86,656,727 - 86,671,652 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	87,022,933 - 87,037,858 (-)	NCBI		MGSCv36	mm8
Celera	8	88,433,223 - 88,448,143 (-)	NCBI		Celera
Cytogenetic Map	8	C2	NCBI
cM Map	8	40.32	NCBI

Cc2d1a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	32,668,066 - 32,682,571 (+)	Ensembl
ChiLan1.0	NW_004955415	32,667,832 - 32,682,945 (+)	NCBI	ChiLan1.0	ChiLan1.0

CC2D1A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	18,835,548 - 18,860,262 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	17,836,446 - 17,861,127 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	13,468,650 - 13,493,308 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	14,210,594 - 14,219,550 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

CC2D1A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	48,549,107 - 48,566,062 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	48,549,591 - 48,565,828 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	48,423,173 - 48,440,139 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	49,067,294 - 49,084,315 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	49,067,295 - 49,084,158 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	48,277,836 - 48,294,830 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	48,704,318 - 48,721,302 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	48,947,626 - 48,964,622 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cc2d1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	207,727,636 - 207,743,011 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	2,613,365 - 2,626,666 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936659	2,611,621 - 2,627,071 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CC2D1A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	65,235,758 - 65,252,506 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	65,235,757 - 65,252,481 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	65,509,481 - 65,526,202 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CC2D1A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	12,567,165 - 12,589,680 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	12,567,237 - 12,589,815 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666074	7,070,733 - 7,095,510 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cc2d1a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624901	1,188,986 - 1,205,511 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624901	1,188,687 - 1,204,627 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cc2d1a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	16,139,960 - 16,155,075 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cc2d1a
141 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	178
Count of miRNA genes:	65
Interacting mature miRNAs:	73
Transcripts:	ENSRNOT00000009806, ENSRNOT00000045180
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	7997750	52997750	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	7997750	52997750	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	5748064	50748064	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	31287532	51431640	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	7997750	52997750	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	7997750	52997750	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
1354607	Gmadr1	Adrenal mass QTL 1	5.83		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	19	40727092	54856850	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1354600	Salc2	Saline consumption QTL 2	9.91	0.001	drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	19	40727092	54856850	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat
1354633	Bw28	Body weight QTL 28	6.04		body mass (VT:0001259)	body weight (CMO:0000012)	19	40727092	54856850	Rat
61407	Scl12	Serum cholesterol level QTL 12		0.001	blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	19	30099383	47207961	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC081948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009806 ⟹ ENSRNOP00000009806

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	25,247,094 - 25,261,946 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000045180 ⟹ ENSRNOP00000045667

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	40,916,532 - 40,931,701 (+)	Ensembl
mRatBN7.2 Ensembl	19	24,011,938 - 24,026,936 (+)	Ensembl
Rnor_6.0 Ensembl	19	25,246,913 - 25,261,911 (-)	Ensembl

RefSeq Acc Id:

NM_001013869 ⟹ NP_001013891

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	40,916,703 - 40,931,702 (+)	NCBI
mRatBN7.2	19	24,011,938 - 24,026,937 (+)	NCBI
Rnor_6.0	19	25,246,912 - 25,261,911 (-)	NCBI
Rnor_5.0	19	36,224,012 - 36,239,076 (-)	NCBI
RGSC_v3.4	19	25,695,784 - 25,710,783 (+)	RGD
Celera	19	23,560,276 - 23,575,275 (+)	RGD

Sequence:

show sequence

CGGAAGCTGGGCGGCCAAAAGTCGAGAATCCCAGGGGCCGGTCGCAGAGAAGGAACTCGGGGCT
CAGGCACAGCGCGAGCTCTGAGACGCGACTTCGGTGAAGAGGCAAGGCAAGGCAAAGGTGCAGG
GGCTGGTAGTCCGGGCTTCGAGCCTGGAAGATGCACAAGAGGAATGGACCCCAGGCACCCCCGG
GCCGAGGTGCTGTCACCGCCCGCCAGCTTGGTCTGCTGGTTGACTTCTCCCCAGATGGCCTGAT
GATCCCTGAGGATGGGGTAAATGATGAAGAATTGGAGGCTGAATTCCTGGCTTTGGTGGGGGGT
CAGCCCCAGGCCCTAGAGAAACTGAAAGGCAAAGGTCCCCTGCCAATGGAAGCCATTGAGAAAA
TGGCCCGGCTCTGCATGAGAGACCTGGATGAGGATGAGGAGGGGACAGATGAGGATGTGGAGGC
TGACGAGGACCTGCTGGCAGAGCTAAATGAGGTCCTTGGAGAAGAAAGGAAGGCTGTGGAGCCC
GCGATGCCTGTGGTCCAGACGCTGGAAAACCTGCTGGTCTCTGCAAAGAAGGGCAACACCATCA
ATGAAGCCGATATTCCACCACCTGTAGCCTCGGGGAAGGGGCCAGCAATTGGGCACAGCCACAC
CCACACTACTTCCCACCTGGCTCCTGTAAGCCCGCCAGCCCCAGAGCCCAGCGTCACCTTGGAG
GCCCCATCTACCACTGCACAAACCTCTGCTAAGCCCCAGCTATCCCCAGATCCCTGCAGCCCCC
TTGCCCGGTTGCAGAGCCTCCAGCATGAGTACAAAGTGGCTGCTCTCAGAGCCAAGCATCAGGA
TGACACTGCTACAGCCGCCAGATACTTGAGAGTCTCGAAGAGCTTTGACCCTGTCTTGGAGGCC
CTGAGCCGAGGGGAACTGGTAGACCTGTCCCGCCTGCCCCCTCCACCTGACCAGCTGTCCCCAG
AGCCCCCCTTGCCAGCAGCCCAACCTGTGACTCCTGCCTCAACACTCACCAGGCCAGAGGTTCC
CCAGCCCCCGAAGAACCTCCTGGAGGCGCTGGAGCAGCGAATGGAGCGGTACCACGTGGCTGCA
GCCCAGGCCAAGGCCAAGGGTGACCAGAGGAAGGCACGCATGCACGAACGAATTGTCAAGCAAT
ACCAAGATGCTATTCGAGCCCACAAGGCAGGCCGAGCTGTGGATGTGGCTGAGCTCCCAGTGCC
CCCAGGCTTCCCCCCAATTCAGGGCTTGGAGTCTGCGGAGCCTTCTCAGCAGAGCCTGGTGGGA
GTCCTAGAAACCGCCATGAAGCTTGCCAACCACGAAGAAGGCTCAGATGAGGAAGAGGAAGAGA
CTCCAAAGAAGAACACCCCTGCTGCCTCCACAGCCCAGCCGAAGGCCTCGCCCTCCAGGGCACC
TCCATCAGGACCAGCCCCAGCAGGCAAAGCTGCTTCCAAGGGCACCTCCACCAGGGCCCAGCAG
CAGCTGGCCTTCCTGGAGGGCCGTAAGAAGCAGCTCCTTCAGGCTGCGCTGCGCGCCAAGCAAA
AGAACGACGTAGAGGGCGCCAAGATGCATCTGCGCCAGGCCAAAGGGCTGGAGCCCATGCTAGA
GGCCTCCCGCAATGGACTGCCTGTGGATATTGCCAAGGTGCCACCTGCTCCTGTCAACAAGGAT
GATTTTGTGCTGGTCCAGCGGCCTGGCCCAGGCATGTCTCAGGAGGCCGTGCGTCGCTATGGGG
AGCTTACCAAGCTCCTGAGACAGCAACATGAAATGTGTCTAAACCACTCCACACAGTTCACCCA
CCTGGGCAACATTGCTGAAACCATTAAGTTCGAGAAGCTGGCAGAAGACTGTAAGCGGAGCATG
GACACCTTAAAACAAGCCTTCGCCCGCAGTCTGCCCACACCTGCAGCCCGCTTTGAGCAAAGGA
CCTTCAGTGTCATCAAGATCTTTCCGGACTTGAGCAACAACGACATGCTCCTGTTTATTGTGAA
GGGCATCAACTTGCCCACACCCCCAGGACTGTCCCCCAGTGACCTGGATGCCTTTGTCCGCTTC
GACTTCCCTTATCCCAATGTGGAGGAAGCTCAGAAAGATAAGACCAGCGTGATCAAAAGCACAG
ACTCCCCTGAATTCAAGGAGCAGTTCAAACTCTGCATCAACCGTGGCCACCGTGGCTTCCGAAG
GGCCATCCAAACCAAGGGCATCAAGTTCGAAGTGGTCCACAAGGGGGGATTATTTAAGACTGAC
AGGGTGCTGGGGACAGCCCAGCTGAAGCTGGATACATTGGAAACAGCTTGTGAGGTCCACGAGA
TCCTGGAGGTTTTGGATGGCCGCCGGCCCACAGGGGGTCGCCTTGAGGTGATGGTCCGCATCCG
GGAGCCACTGACAGCCCAGCAGTTGGAGACTACAACTGAGAGGTGGCTGGTCATTGATCACATC
CCAGCAGCTGTGCCCACTGTCACTGGGCCCAAAGCAAAGGTTCCTCTCATACCTGCGTCTTCAA
AGGAAGCAGGCAACAGATCATCACGGCCCCTGCATAGCCTTAGTGTGCTGGCCTTTGACCAAGA
GCGGCTAGAAAGGAAGATCCTGGCCCTGAGGCAGGCACGCCGGCCTGTACCTCCAGAAGTGGCC
CAGCAGTACCAGGACGTAGTACAGCGTAGCCAGTGGCAGAGGGCACAGCTGGAGCAGGGAGGTG
CTGCCCTCCGCAGGGAGTATGCAAGCCATCTGGAGCGCCAGCTGCACTTCTATACAGAGGCTGC
CCGGCGCCTGGGCTATGACGGAAGCAGGGAGGCCGCGAAGGAGGCATTGTACCGGCGGAACCTG
GTGGAGAGTGAGCTGCAGCGACTCCGCAGGTGAGGCCCATCCTGGACCACAGCCTGATGCCAGG
CAGAGCTCCAGGGCCACCGAAGAGACAAGCAGACAATCAGTGGACAATCAGTGGTTCTGGGCTC
CCCCTGTCCGGGCCCCCGGCCCTAGGGGCATCAGGACAGCACCTCACCCCAGCCTGGCTGGTCG
GGCCTTGGAGAGTCCTGTTTGCACATCCAGGAGCGTCTGGAGCAAGGAGAGTAGCTAGGACACG
AGCCCAGAGGGCCCTGCAAGCACTTTACTTCCTGCCCTTCCCATCGTTGACCCCAAAGATACCT
CTGAGGCTGTCAAGCTCAGCTGACTCTCTAAGGACTGTGCTGACCCCGCTGCCCCTCACCCCCA
GGGCCAACACAGAATGAACAGCCAAGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006255233 ⟹ XP_006255295

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	40,916,587 - 40,931,702 (+)	NCBI
mRatBN7.2	19	24,011,899 - 24,026,937 (+)	NCBI
Rnor_6.0	19	25,246,912 - 25,261,965 (-)	NCBI
Rnor_5.0	19	36,224,012 - 36,239,076 (-)	NCBI

Sequence:

show sequence

AGTTTAGTTGCAGAGTGCCCAAGAATCCAGTGGCCGCGCTCCCGAAGGCCAAGGCGGAAGCTGG
GCGGCCAAAAGTCGAGAATCCCAGGGGCCGGTCGCAGAGAAGGAACTCGGGGCTCAGGCACAGC
GCGAGCTCTGAGACGCGACTTCGGTGAAGAGGCAAGGCAAGGCAAAGGTGCAGGGGCTGGTAGT
CCGGGCTTCGAGCCTGGAAGATGCACAAGAGGAATGGACCCCAGGCACCCCCGGGCCGAGGTGC
TGTCACCGCCCGCCAGCTTGGTCTGCTGGTTGACTTCTCCCCAGATGGCCTGATGATCCCTGAG
GATGGGGTAAATGATGAAGAATTGGAGGCTGAATTCCTGGCTTTGGTGGGGGGTCAGCCCCAGG
CCCTAGAGAAACTGAAAGGCAAAGGTCCCCTGCCAATGGAAGCCATTGAGAAAATGGCCCGGCT
CTGCATGAGAGACCTGGATGAGGATGAGGAGGGGACAGATGAGGATGTGGAGGCTGACGAGGAC
CTGCTGGCAGAGCTAAATGAGGTCCTTGGAGAAGAAAGGAAGGCTGTGGAGCCCGCGATGCCTG
TGGTCCAGCCGAAGCCTTCAAGCCCCAACCCAGGAATAGAGGCCACACTGCAGGAGAGGCTAAT
CCTCTACCAGTCCGCAGTGGAGAGTGCCAGGCAAGCTGGGGACAGCGCCAAGATGCGACGCTAT
GACCGGGGACTCAAGACGCTGGAAAACCTGCTGGTCTCTGCAAAGAAGGGCAACACCATCAATG
AAGCCGATATTCCACCACCTGTAGCCTCGGGGAAGGGGCCAGCAATTGGGCACAGCCACACCCA
CACTACTTCCCACCTGGCTCCTGTAAGCCCGCCAGCCCCAGAGCCCAGCGTCACCTTGGAGGCC
CCATCTACCACTGCACAAACCTCTGCTAAGCCCCAGCTATCCCCAGATCCCTGCAGCCCCCTTG
CCCGGTTGCAGAGCCTCCAGCATGAGTACAAAGTGGCTGCTCTCAGAGCCAAGCATCAGGATGA
CACTGCTACAGCCGCCAGATACTTGAGAGTCTCGAAGAGCTTTGACCCTGTCTTGGAGGCCCTG
AGCCGAGGGGAACTGGTAGACCTGTCCCGCCTGCCCCCTCCACCTGACCAGCTGTCCCCAGAGC
CCCCCTTGCCAGCAGCCCAACCTGTGACTCCTGCCTCAACACTCACCAGGCCAGAGGTTCCCCA
GCCCCCGAAGAACCTCCTGGAGGCGCTGGAGCAGCGAATGGAGCGGTACCACGTGGCTGCAGCC
CAGGCCAAGGCCAAGGGTGACCAGAGGAAGGCACGCATGCACGAACGAATTGTCAAGCAATACC
AAGATGCTATTCGAGCCCACAAGGCAGGCCGAGCTGTGGATGTGGCTGAGCTCCCAGTGCCCCC
AGGCTTCCCCCCAATTCAGGGCTTGGAGTCTGCGGAGCCTTCTCAGCAGAGCCTGGTGGGAGTC
CTAGAAACCGCCATGAAGCTTGCCAACCACGAAGAAGGCTCAGATGAGGAAGAGGAAGAGACTC
CAAAGAAGCAGAACACCCCTGCTGCCTCCACAGCCCAGCCGAAGGCCTCGCCCTCCAGGGCACC
TCCATCAGGACCAGCCCCAGCAGGCAAAGCTGCTTCCAAGGGCACCTCCACCAGGGCCCAGCAG
CAGCTGGCCTTCCTGGAGGGCCGTAAGAAGCAGCTCCTTCAGGCTGCGCTGCGCGCCAAGCAAA
AGAACGACGTAGAGGGCGCCAAGATGCATCTGCGCCAGGCCAAAGGGCTGGAGCCCATGCTAGA
GGCCTCCCGCAATGGACTGCCTGTGGATATTGCCAAGGTGCCACCTGCTCCTGTCAACAAGGAT
GATTTTGTGCTGGTCCAGCGGCCTGGCCCAGGCATGTCTCAGGAGGCCGTGCGTCGCTATGGGG
AGCTTACCAAGCTCCTGAGACAGCAACATGAAATGTGTCTAAACCACTCCACACAGTTCACCCA
CCTGGGCAACATTGCTGAAACCATTAAGTTCGAGAAGCTGGCAGAAGACTGTAAGCGGAGCATG
GACACCTTAAAACAAGCCTTCGCCCGCAGTCTGCCCACACCTGCAGCCCGCTTTGAGCAAAGGA
CCTTCAGTGTCATCAAGATCTTTCCGGACTTGAGCAACAACGACATGCTCCTGTTTATTGTGAA
GGGCATCAACTTGCCCACACCCCCAGGACTGTCCCCCAGTGACCTGGATGCCTTTGTCCGCTTC
GACTTCCCTTATCCCAATGTGGAGGAAGCTCAGAAAGATAAGACCAGCGTGATCAAAAGCACAG
ACTCCCCTGAATTCAAGGAGCAGTTCAAACTCTGCATCAACCGTGGCCACCGTGGCTTCCGAAG
GGCCATCCAAACCAAGGGCATCAAGTTCGAAGTGGTCCACAAGGGGGGATTATTTAAGACTGAC
AGGGTGCTGGGGACAGCCCAGCTGAAGCTGGATACATTGGAAACAGCTTGTGAGGTCCACGAGA
TCCTGGAGGTTTTGGATGGCCGCCGGCCCACAGGGGGTCGCCTTGAGGTGATGGTCCGCATCCG
GGAGCCACTGACAGCCCAGCAGTTGGAGACTACAACTGAGAGGTGGCTGGTCATTGATCACATC
CCAGCAGCTGTGCCCACTGTCACTGGGCCCAAAGCAAAGGTTCCTCTCATACCTGCGTCTTCAA
AGGAAGCAGGCAACAGATCATCACGGCCCCTGCATAGCCTTAGTGTGCTGGCCTTTGACCAAGA
GCGGCTAGAAAGGAAGATCCTGGCCCTGAGGCAGGCACGCCGGCCTGTACCTCCAGAAGTGGCC
CAGCAGTACCAGGACGTAGTACAGCGTAGCCAGTGGCAGAGGGCACAGCTGGAGCAGGGAGGTG
CTGCCCTCCGCAGGGAGTATGCAAGCCATCTGGAGCGCCAGCTGCACTTCTATACAGAGGCTGC
CCGGCGCCTGGGCTATGACGGAAGCAGGGAGGCCGCGAAGGAGGCATTGTACCGGCGGAACCTG
GTGGAGAGTGAGCTGCAGCGACTCCGCAGGTGAGGCCCATCCTGGACCACAGCCTGATGCCAGG
CAGAGCTCCAGGGCCACCGAAGAGACAAGCAGACAATCAGTGGACAATCAGTGGTTCTGGGCTC
CCCCTGTCCGGGCCCCCGGCCCTAGGGGCATCAGGACAGCACCTCACCCCAGCCTGGCTGGTCG
GGCCTTGGAGAGTCCTGTTTGCACATCCAGGAGCGTCTGGAGCAAGGAGAGTAGCTAGGACACG
AGCCCAGAGGGCCCTGCAAGCACTTTACTTCCTGCCCTTCCCATCGTTGACCCCAAAGATACCT
CTGAGGCTGTCAAGCTCAGCTGACTCTCTAAGGACTGTGCTGACCCCGCTGCCCCTCACCCCCA
GGGCCAACACAGAATGAACAGCCAAGGCCA

hide sequence

RefSeq Acc Id:

XM_006255234 ⟹ XP_006255296

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	40,916,587 - 40,931,702 (+)	NCBI
mRatBN7.2	19	24,011,899 - 24,026,937 (+)	NCBI
Rnor_6.0	19	25,246,912 - 25,261,965 (-)	NCBI
Rnor_5.0	19	36,224,012 - 36,239,076 (-)	NCBI

Sequence:

show sequence

AGTTTAGTTGCAGAGTGCCCAAGAATCCAGTGGCCGCGCTCCCGAAGGCCAAGGCGGAAGCTGG
GCGGCCAAAAGTCGAGAATCCCAGGGGCCGGTCGCAGAGAAGGAACTCGGGGCTCAGGCACAGC
GCGAGCTCTGAGACGCGACTTCGGTGAAGAGGCAAGGCAAGGCAAAGGTGCAGGGGCTGGTAGT
CCGGGCTTCGAGCCTGGAAGATGCACAAGAGGAATGGACCCCAGGCACCCCCGGGCCGAGGTGC
TGTCACCGCCCGCCAGCTTGGTCTGCTGGTTGACTTCTCCCCAGATGGCCTGATGATCCCTGAG
GATGGGGTAAATGATGAAGAATTGGAGGCTGAATTCCTGGCTTTGGTGGGGGGTCAGCCCCAGG
CCCTAGAGAAACTGAAAGGCAAAGGTCCCCTGCCAATGGAAGCCATTGAGAAAATGGCCCGGCT
CTGCATGAGAGACCTGGATGAGGATGAGGAGGGGACAGATGAGGATGTGGAGGCTGACGAGGAC
CTGCTGGCAGAGCTAAATGAGGTCCTTGGAGAAGAAAGGAAGGCTGTGGAGCCCGCGATGCCTG
TGGTCCAGCCGAAGCCTTCAAGCCCCAACCCAGGAATAGAGGCCACACTGCAGGAGAGGCTAAT
CCTCTACCAGTCCGCAGTGGAGAGTGCCAGGCAAGCTGGGGACAGCGCCAAGATGCGACGCTAT
GACCGGGGACTCAAGACGCTGGAAAACCTGCTGGTCTCTGCAAAGAAGGGCAACACCATCAATG
AAGCCGATATTCCACCACCTGTAGCCTCGGGGAAGGGGCCAGCAATTGGGCACAGCCACACCCA
CACTACTTCCCACCTGGCTCCTGTAAGCCCGCCAGCCCCAGAGCCCAGCGTCACCTTGGAGGCC
CCATCTACCACTGCACAAACCTCTGCTAAGCCCCAGCTATCCCCAGATCCCTGCAGCCCCCTTG
CCCGGTTGCAGAGCCTCCAGCATGAGTACAAAGTGGCTGCTCTCAGAGCCAAGCATCAGGATGA
CACTGCTACAGCCGCCAGATACTTGAGAGTCTCGAAGAGCTTTGACCCTGTCTTGGAGGCCCTG
AGCCGAGGGGAACTGGTAGACCTGTCCCGCCTGCCCCCTCCACCTGACCAGCTGTCCCCAGAGC
CCCCCTTGCCAGCAGCCCAACCTGTGACTCCTGCCTCAACACTCACCAGGCCAGAGGTTCCCCA
GCCCCCGAAGAACCTCCTGGAGGCGCTGGAGCAGCGAATGGAGCGGTACCACGTGGCTGCAGCC
CAGGCCAAGGCCAAGGGTGACCAGAGGAAGGCACGCATGCACGAACGAATTGTCAAGCAATACC
AAGATGCTATTCGAGCCCACAAGGCAGGCCGAGCTGTGGATGTGGCTGAGCTCCCAGTGCCCCC
AGGCTTCCCCCCAATTCAGGGCTTGGAGTCTGCGGAGCCTTCTCAGCAGAGCCTGGTGGGAGTC
CTAGAAACCGCCATGAAGCTTGCCAACCACGAAGAAGGCTCAGATGAGGAAGAGGAAGAGACTC
CAAAGAAGAACACCCCTGCTGCCTCCACAGCCCAGCCGAAGGCCTCGCCCTCCAGGGCACCTCC
ATCAGGACCAGCCCCAGCAGGCAAAGCTGCTTCCAAGGGCACCTCCACCAGGGCCCAGCAGCAG
CTGGCCTTCCTGGAGGGCCGTAAGAAGCAGCTCCTTCAGGCTGCGCTGCGCGCCAAGCAAAAGA
ACGACGTAGAGGGCGCCAAGATGCATCTGCGCCAGGCCAAAGGGCTGGAGCCCATGCTAGAGGC
CTCCCGCAATGGACTGCCTGTGGATATTGCCAAGGTGCCACCTGCTCCTGTCAACAAGGATGAT
TTTGTGCTGGTCCAGCGGCCTGGCCCAGGCATGTCTCAGGAGGCCGTGCGTCGCTATGGGGAGC
TTACCAAGCTCCTGAGACAGCAACATGAAATGTGTCTAAACCACTCCACACAGTTCACCCACCT
GGGCAACATTGCTGAAACCATTAAGTTCGAGAAGCTGGCAGAAGACTGTAAGCGGAGCATGGAC
ACCTTAAAACAAGCCTTCGCCCGCAGTCTGCCCACACCTGCAGCCCGCTTTGAGCAAAGGACCT
TCAGTGTCATCAAGATCTTTCCGGACTTGAGCAACAACGACATGCTCCTGTTTATTGTGAAGGG
CATCAACTTGCCCACACCCCCAGGACTGTCCCCCAGTGACCTGGATGCCTTTGTCCGCTTCGAC
TTCCCTTATCCCAATGTGGAGGAAGCTCAGAAAGATAAGACCAGCGTGATCAAAAGCACAGACT
CCCCTGAATTCAAGGAGCAGTTCAAACTCTGCATCAACCGTGGCCACCGTGGCTTCCGAAGGGC
CATCCAAACCAAGGGCATCAAGTTCGAAGTGGTCCACAAGGGGGGATTATTTAAGACTGACAGG
GTGCTGGGGACAGCCCAGCTGAAGCTGGATACATTGGAAACAGCTTGTGAGGTCCACGAGATCC
TGGAGGTTTTGGATGGCCGCCGGCCCACAGGGGGTCGCCTTGAGGTGATGGTCCGCATCCGGGA
GCCACTGACAGCCCAGCAGTTGGAGACTACAACTGAGAGGTGGCTGGTCATTGATCACATCCCA
GCAGCTGTGCCCACTGTCACTGGGCCCAAAGCAAAGGTTCCTCTCATACCTGCGTCTTCAAAGG
AAGCAGGCAACAGATCATCACGGCCCCTGCATAGCCTTAGTGTGCTGGCCTTTGACCAAGAGCG
GCTAGAAAGGAAGATCCTGGCCCTGAGGCAGGCACGCCGGCCTGTACCTCCAGAAGTGGCCCAG
CAGTACCAGGACGTAGTACAGCGTAGCCAGTGGCAGAGGGCACAGCTGGAGCAGGGAGGTGCTG
CCCTCCGCAGGGAGTATGCAAGCCATCTGGAGCGCCAGCTGCACTTCTATACAGAGGCTGCCCG
GCGCCTGGGCTATGACGGAAGCAGGGAGGCCGCGAAGGAGGCATTGTACCGGCGGAACCTGGTG
GAGAGTGAGCTGCAGCGACTCCGCAGGTGAGGCCCATCCTGGACCACAGCCTGATGCCAGGCAG
AGCTCCAGGGCCACCGAAGAGACAAGCAGACAATCAGTGGACAATCAGTGGTTCTGGGCTCCCC
CTGTCCGGGCCCCCGGCCCTAGGGGCATCAGGACAGCACCTCACCCCAGCCTGGCTGGTCGGGC
CTTGGAGAGTCCTGTTTGCACATCCAGGAGCGTCTGGAGCAAGGAGAGTAGCTAGGACACGAGC
CCAGAGGGCCCTGCAAGCACTTTACTTCCTGCCCTTCCCATCGTTGACCCCAAAGATACCTCTG
AGGCTGTCAAGCTCAGCTGACTCTCTAAGGACTGTGCTGACCCCGCTGCCCCTCACCCCCAGGG
CCAACACAGAATGAACAGCCAAGGCCA

hide sequence

RefSeq Acc Id:

XM_039097531 ⟹ XP_038953459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	40,916,587 - 40,931,702 (+)	NCBI
mRatBN7.2	19	24,011,898 - 24,026,937 (+)	NCBI

RefSeq Acc Id:

XM_039097532 ⟹ XP_038953460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	40,916,587 - 40,931,702 (+)	NCBI
mRatBN7.2	19	24,011,898 - 24,026,937 (+)	NCBI

RefSeq Acc Id:

XM_039097533 ⟹ XP_038953461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	40,916,587 - 40,931,702 (+)	NCBI
mRatBN7.2	19	24,011,897 - 24,026,937 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013891	(Get FASTA)	NCBI Sequence Viewer
	NP_001420919	(Get FASTA)	NCBI Sequence Viewer
	NP_001420920	(Get FASTA)	NCBI Sequence Viewer
	NP_001420921	(Get FASTA)	NCBI Sequence Viewer
	XP_006255295	(Get FASTA)	NCBI Sequence Viewer
	XP_006255296	(Get FASTA)	NCBI Sequence Viewer
	XP_038953459	(Get FASTA)	NCBI Sequence Viewer
	XP_038953460	(Get FASTA)	NCBI Sequence Viewer
	XP_038953461	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81948	(Get FASTA)	NCBI Sequence Viewer
	EDL92235	(Get FASTA)	NCBI Sequence Viewer
	EDL92236	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000045667
GenBank Protein	Q66HA5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013891 ⟸ NM_001013869

- UniProtKB:

A6IYA7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MHKRNGPQAPPGRGAVTARQLGLLVDFSPDGLMIPEDGVNDEELEAEFLALVGGQPQALEKLKG
KGPLPMEAIEKMARLCMRDLDEDEEGTDEDVEADEDLLAELNEVLGEERKAVEPAMPVVQTLEN
LLVSAKKGNTINEADIPPPVASGKGPAIGHSHTHTTSHLAPVSPPAPEPSVTLEAPSTTAQTSA
KPQLSPDPCSPLARLQSLQHEYKVAALRAKHQDDTATAARYLRVSKSFDPVLEALSRGELVDLS
RLPPPPDQLSPEPPLPAAQPVTPASTLTRPEVPQPPKNLLEALEQRMERYHVAAAQAKAKGDQR
KARMHERIVKQYQDAIRAHKAGRAVDVAELPVPPGFPPIQGLESAEPSQQSLVGVLETAMKLAN
HEEGSDEEEEETPKKNTPAASTAQPKASPSRAPPSGPAPAGKAASKGTSTRAQQQLAFLEGRKK
QLLQAALRAKQKNDVEGAKMHLRQAKGLEPMLEASRNGLPVDIAKVPPAPVNKDDFVLVQRPGP
GMSQEAVRRYGELTKLLRQQHEMCLNHSTQFTHLGNIAETIKFEKLAEDCKRSMDTLKQAFARS
LPTPAARFEQRTFSVIKIFPDLSNNDMLLFIVKGINLPTPPGLSPSDLDAFVRFDFPYPNVEEA
QKDKTSVIKSTDSPEFKEQFKLCINRGHRGFRRAIQTKGIKFEVVHKGGLFKTDRVLGTAQLKL
DTLETACEVHEILEVLDGRRPTGGRLEVMVRIREPLTAQQLETTTERWLVIDHIPAAVPTVTGP
KAKVPLIPASSKEAGNRSSRPLHSLSVLAFDQERLERKILALRQARRPVPPEVAQQYQDVVQRS
QWQRAQLEQGGAALRREYASHLERQLHFYTEAARRLGYDGSREAAKEALYRRNLVESELQRLRR

hide sequence

RefSeq Acc Id:

XP_006255296 ⟸ XM_006255234

- Peptide Label:

isoform X5

- Sequence:

show sequence

MHKRNGPQAPPGRGAVTARQLGLLVDFSPDGLMIPEDGVNDEELEAEFLALVGGQPQALEKLKG
KGPLPMEAIEKMARLCMRDLDEDEEGTDEDVEADEDLLAELNEVLGEERKAVEPAMPVVQPKPS
SPNPGIEATLQERLILYQSAVESARQAGDSAKMRRYDRGLKTLENLLVSAKKGNTINEADIPPP
VASGKGPAIGHSHTHTTSHLAPVSPPAPEPSVTLEAPSTTAQTSAKPQLSPDPCSPLARLQSLQ
HEYKVAALRAKHQDDTATAARYLRVSKSFDPVLEALSRGELVDLSRLPPPPDQLSPEPPLPAAQ
PVTPASTLTRPEVPQPPKNLLEALEQRMERYHVAAAQAKAKGDQRKARMHERIVKQYQDAIRAH
KAGRAVDVAELPVPPGFPPIQGLESAEPSQQSLVGVLETAMKLANHEEGSDEEEEETPKKNTPA
ASTAQPKASPSRAPPSGPAPAGKAASKGTSTRAQQQLAFLEGRKKQLLQAALRAKQKNDVEGAK
MHLRQAKGLEPMLEASRNGLPVDIAKVPPAPVNKDDFVLVQRPGPGMSQEAVRRYGELTKLLRQ
QHEMCLNHSTQFTHLGNIAETIKFEKLAEDCKRSMDTLKQAFARSLPTPAARFEQRTFSVIKIF
PDLSNNDMLLFIVKGINLPTPPGLSPSDLDAFVRFDFPYPNVEEAQKDKTSVIKSTDSPEFKEQ
FKLCINRGHRGFRRAIQTKGIKFEVVHKGGLFKTDRVLGTAQLKLDTLETACEVHEILEVLDGR
RPTGGRLEVMVRIREPLTAQQLETTTERWLVIDHIPAAVPTVTGPKAKVPLIPASSKEAGNRSS
RPLHSLSVLAFDQERLERKILALRQARRPVPPEVAQQYQDVVQRSQWQRAQLEQGGAALRREYA
SHLERQLHFYTEAARRLGYDGSREAAKEALYRRNLVESELQRLRR

hide sequence

RefSeq Acc Id:

XP_006255295 ⟸ XM_006255233

- Peptide Label:

isoform X4

- Sequence:

show sequence

MHKRNGPQAPPGRGAVTARQLGLLVDFSPDGLMIPEDGVNDEELEAEFLALVGGQPQALEKLKG
KGPLPMEAIEKMARLCMRDLDEDEEGTDEDVEADEDLLAELNEVLGEERKAVEPAMPVVQPKPS
SPNPGIEATLQERLILYQSAVESARQAGDSAKMRRYDRGLKTLENLLVSAKKGNTINEADIPPP
VASGKGPAIGHSHTHTTSHLAPVSPPAPEPSVTLEAPSTTAQTSAKPQLSPDPCSPLARLQSLQ
HEYKVAALRAKHQDDTATAARYLRVSKSFDPVLEALSRGELVDLSRLPPPPDQLSPEPPLPAAQ
PVTPASTLTRPEVPQPPKNLLEALEQRMERYHVAAAQAKAKGDQRKARMHERIVKQYQDAIRAH
KAGRAVDVAELPVPPGFPPIQGLESAEPSQQSLVGVLETAMKLANHEEGSDEEEEETPKKQNTP
AASTAQPKASPSRAPPSGPAPAGKAASKGTSTRAQQQLAFLEGRKKQLLQAALRAKQKNDVEGA
KMHLRQAKGLEPMLEASRNGLPVDIAKVPPAPVNKDDFVLVQRPGPGMSQEAVRRYGELTKLLR
QQHEMCLNHSTQFTHLGNIAETIKFEKLAEDCKRSMDTLKQAFARSLPTPAARFEQRTFSVIKI
FPDLSNNDMLLFIVKGINLPTPPGLSPSDLDAFVRFDFPYPNVEEAQKDKTSVIKSTDSPEFKE
QFKLCINRGHRGFRRAIQTKGIKFEVVHKGGLFKTDRVLGTAQLKLDTLETACEVHEILEVLDG
RRPTGGRLEVMVRIREPLTAQQLETTTERWLVIDHIPAAVPTVTGPKAKVPLIPASSKEAGNRS
SRPLHSLSVLAFDQERLERKILALRQARRPVPPEVAQQYQDVVQRSQWQRAQLEQGGAALRREY
ASHLERQLHFYTEAARRLGYDGSREAAKEALYRRNLVESELQRLRR

hide sequence

Ensembl Acc Id:

ENSRNOP00000045667 ⟸ ENSRNOT00000045180

Ensembl Acc Id:

ENSRNOP00000009806 ⟸ ENSRNOT00000009806

RefSeq Acc Id:	XP_038953461 ⟸ XM_039097533
- Peptide Label:	isoform X3
- UniProtKB:	A6IYA7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953459 ⟸ XM_039097531
- Peptide Label:	isoform X1
- UniProtKB:	A6IYA7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953460 ⟸ XM_039097532
- Peptide Label:	isoform X2

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66HA5-F1-model_v2	AlphaFold	Q66HA5	1-941	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701013

Promoter ID:

EPDNEW_R11537

Type:

initiation region

Name:

Cc2d1a_1

Description:

coiled-coil and C2 domain containing 1A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	25,261,915 - 25,261,975	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306108	AgrOrtholog
BioCyc Gene	G2FUF-6065	BioCyc
Ensembl Genes	ENSRNOG00000006747	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000045180	ENTREZGENE
Gene3D-CATH	2.60.40.150	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7122187	IMAGE-MGC_LOAD
InterPro	C2_dom	UniProtKB/Swiss-Prot
	C2_domain_sf	UniProtKB/Swiss-Prot
	C2_Freud	UniProtKB/Swiss-Prot
	CC2D1A/B	UniProtKB/Swiss-Prot
	DM14	UniProtKB/Swiss-Prot
KEGG Report	rno:288908	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94029	IMAGE-MGC_LOAD
NCBI Gene	288908	ENTREZGENE
PANTHER	COILED-COIL AND C2 DOMAIN-CONTAINING PROTEIN 1A	UniProtKB/Swiss-Prot
	PTHR13076	UniProtKB/Swiss-Prot
Pfam	CC2D1A-B_DM14	UniProtKB/Swiss-Prot
	PF00168	UniProtKB/Swiss-Prot
PhenoGen	Cc2d1a	PhenoGen
PROSITE	PS50004	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000006747	RatGTEx
SMART	DM14	UniProtKB/Swiss-Prot
	SM00239	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49562	UniProtKB/Swiss-Prot
UniProt	A0A8L2QP71	ENTREZGENE, UniProtKB/TrEMBL
	A6IYA7	ENTREZGENE, UniProtKB/TrEMBL
	C2D1A_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Cc2d1a	coiled-coil and C2 domain containing 1A	RGD1306108	similar to cDNA sequence BC016188	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1306108	similar to cDNA sequence BC016188	RGD1306108_predicted	similar to cDNA sequence BC016188 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306108_predicted	similar to cDNA sequence BC016188 (predicted)	LOC288908_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC288908_predicted	similar to cDNA sequence BC016188 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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