Zscan30 (zinc finger and SCAN domain containing 30) - Rat Genome Database

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Pathways
Gene: Zscan30 (zinc finger and SCAN domain containing 30) Rattus norvegicus
Analyze
Symbol: Zscan30
Name: zinc finger and SCAN domain containing 30
RGD ID: 1306095
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human ZSCAN30 (zinc finger and SCAN domain containing 30); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AABR07031494.1; LOC364827; Zfp397os; zinc finger and SCAN domain-containing protein 30; zinc finger protein 397; zinc finger protein 397 opposite strand; Znf397; Znf397os; Zpf397os
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81815,524,313 - 15,540,983 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1815,524,313 - 15,540,953 (-)EnsemblGRCr8
mRatBN7.21815,245,140 - 15,266,204 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1815,244,379 - 15,264,632 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1815,434,671 - 15,451,334 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01816,217,375 - 16,234,038 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01815,507,113 - 15,523,776 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01815,866,470 - 15,880,569 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1815,868,068 - 15,873,793 (-)NCBIrn6Rnor6.0
Rnor_5.01815,633,119 - 15,646,180 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41815,734,841 - 15,740,323 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1815,199,908 - 15,214,437 (-)NCBICelera
RGSC_v3.11815,761,405 - 15,766,969 (-)NCBI
Cytogenetic Map18p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zscan30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81815,524,313 - 15,540,983 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1815,524,313 - 15,540,953 (-)EnsemblGRCr8
mRatBN7.21815,245,140 - 15,266,204 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1815,244,379 - 15,264,632 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1815,434,671 - 15,451,334 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01816,217,375 - 16,234,038 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01815,507,113 - 15,523,776 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01815,866,470 - 15,880,569 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1815,868,068 - 15,873,793 (-)NCBIrn6Rnor6.0
Rnor_5.01815,633,119 - 15,646,180 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41815,734,841 - 15,740,323 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1815,199,908 - 15,214,437 (-)NCBICelera
RGSC_v3.11815,761,405 - 15,766,969 (-)NCBI
Cytogenetic Map18p12NCBI
ZSCAN30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381835,251,062 - 35,290,229 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1835,251,058 - 35,290,245 (-)Ensemblhg38GRCh38
GRCh371832,831,026 - 32,870,193 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361831,084,629 - 31,124,191 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1829,638,924 - 29,678,100 (-)NCBICelera
Cytogenetic Map18q12.2NCBI
HuRef1829,690,031 - 29,729,813 (-)NCBIHuRef
CHM1_11832,758,008 - 32,797,171 (-)NCBICHM1_1
T2T-CHM13v2.01835,442,347 - 35,481,602 (-)NCBIT2T-CHM13v2.0
Zscan30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391824,065,597 - 24,120,362 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1824,097,875 - 24,104,844 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm39 Ensembl1824,064,311 - 24,120,366 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381823,932,591 - 23,987,305 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1823,964,818 - 23,987,226 (-)Ensemblmm10GRCm38
MGSCv371824,129,476 - 24,140,056 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361824,110,237 - 24,114,799 (-)NCBIMGSCv36mm8
Celera1824,461,048 - 24,471,627 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1812.47NCBI
ZSCAN30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21752,640,018 - 52,679,502 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11838,331,190 - 38,372,125 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01828,469,523 - 28,509,063 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11832,058,375 - 32,097,883 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1832,058,375 - 32,074,965 (-)EnsemblpanPan2panpan1.1
ZSCAN30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1754,741,734 - 54,748,122 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl754,742,067 - 54,746,668 (+)EnsemblcanFam3CanFam3.1
Zscan30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494450,460,608 - 50,475,816 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365179,787,933 - 9,803,224 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365179,788,240 - 9,802,619 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSCAN30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6119,088,184 - 119,116,270 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16119,088,184 - 119,116,257 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26111,405,593 - 111,431,217 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103222543
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11845,475,194 - 45,615,750 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1845,497,362 - 45,508,287 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605019,977,945 - 20,013,372 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zscan30
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247799,680,315 - 9,686,601 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247799,678,549 - 9,708,490 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Zscan30
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11519,855,995 - 19,872,493 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zscan30
116 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:16
Count of miRNA genes:16
Interacting mature miRNAs:16
Transcripts:ENSRNOT00000039216
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181221923726822399Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181221668431644508Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18126032889Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)18125071266Rat
6903356Bp354Blood pressure QTL 3544.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18115642423Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181522610142690662Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181221668431644508Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181221923726822399Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18125022372Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181221923726822399Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181221923726822399Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18381190230809809Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181221923726822399Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181221923726822399Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181221923726822399Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18126032889Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 52 67 138 95 11 51 36 32 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001400760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010059591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide FQ212990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000039216   ⟹   ENSRNOP00000034947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1815,525,473 - 15,540,953 (-)Ensembl
mRatBN7.2 Ensembl1815,244,379 - 15,254,254 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120251   ⟹   ENSRNOP00000092601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1815,524,313 - 15,540,953 (-)Ensembl
mRatBN7.2 Ensembl1815,251,730 - 15,264,632 (-)Ensembl
RefSeq Acc Id: NM_001400760   ⟹   NP_001387689
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,524,313 - 15,540,953 (-)NCBI
mRatBN7.21815,249,561 - 15,266,201 (-)NCBI
RefSeq Acc Id: XM_006254478   ⟹   XP_006254540
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,526,465 - 15,540,983 (-)NCBI
mRatBN7.21815,249,561 - 15,266,204 (-)NCBI
Rnor_6.01815,866,470 - 15,880,564 (-)NCBI
Rnor_5.01815,633,119 - 15,646,180 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008772002   ⟹   XP_008770224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,526,465 - 15,534,074 (-)NCBI
mRatBN7.21815,249,561 - 15,259,327 (-)NCBI
Rnor_6.01815,866,470 - 15,873,607 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039097323   ⟹   XP_038953251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,526,465 - 15,540,943 (-)NCBI
mRatBN7.21815,249,561 - 15,263,002 (-)NCBI
RefSeq Acc Id: XM_039097325   ⟹   XP_038953253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,533,473 - 15,540,942 (-)NCBI
mRatBN7.21815,258,753 - 15,264,480 (-)NCBI
RefSeq Acc Id: XM_063277487   ⟹   XP_063133557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,526,465 - 15,540,900 (-)NCBI
RefSeq Acc Id: XM_063277488   ⟹   XP_063133558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,526,465 - 15,540,965 (-)NCBI
RefSeq Acc Id: XM_063277489   ⟹   XP_063133559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,526,465 - 15,540,979 (-)NCBI
RefSeq Acc Id: XM_063277490   ⟹   XP_063133560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,533,473 - 15,540,957 (-)NCBI
RefSeq Acc Id: XR_010059591
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,524,313 - 15,540,946 (-)NCBI
RefSeq Acc Id: XP_006254540   ⟸   XM_006254478
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AI83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770224   ⟸   XM_008772002
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_038953251   ⟸   XM_039097323
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AI83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953253   ⟸   XM_039097325
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000034947   ⟸   ENSRNOT00000039216
Ensembl Acc Id: ENSRNOP00000092601   ⟸   ENSRNOT00000120251
RefSeq Acc Id: NP_001387689   ⟸   NM_001400760
- UniProtKB: A0A8I6AI83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133559   ⟸   XM_063277489
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AI83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133558   ⟸   XM_063277488
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AI83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133557   ⟸   XM_063277487
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AI83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133560   ⟸   XM_063277490
- Peptide Label: isoform X3
Protein Domains
C2H2-type   SCAN box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z940-F1-model_v2 AlphaFold D3Z940 1-453 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306095 AgrOrtholog
BioCyc Gene G2FUF-8167 BioCyc
Ensembl Genes ENSRNOG00000030131 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000039216 ENTREZGENE
  ENSRNOT00000039216.7 UniProtKB/TrEMBL
  ENSRNOT00000120251 ENTREZGENE
  ENSRNOT00000120251.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene 364827 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 771 UniProtKB/TrEMBL
Pfam SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PhenoGen Zscan30 PhenoGen
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030131 RatGTEx
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I6AI83 ENTREZGENE, UniProtKB/TrEMBL
  D3Z940_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Zscan30  zinc finger and SCAN domain containing 30  AABR07031494.1    Data merged from RGD:15003793 737654 PROVISIONAL
2021-09-02 AABR07031494.1    Zscan30  zinc finger and SCAN domain containing 30  Symbol and/or name change 19259462 PROVISIONAL
2021-08-09 Zscan30  zinc finger and SCAN domain containing 30  AABR07031494.1    Symbol and/or name change 19259462 PROVISIONAL
2019-11-08 AABR07031494.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2011-08-01 Zscan30  zinc finger and SCAN domain containing 30  Znf397os  zinc finger protein 397 opposite strand  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-22 Znf397os  zinc finger protein 397 opposite strand  Zscan30  zinc finger and SCAN domain containing 30  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-12 Zscan30  zinc finger and SCAN domain containing 30  Zfp397os  zinc finger protein 397 opposite strand  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-20 Zfp397os  zinc finger protein 397 opposite strand  Zpf397os  zinc finger protein 397 opposite strand  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-30 Zpf397os  zinc finger protein 397 opposite strand  Znf397  zinc finger protein 397   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Znf397  zinc finger protein 397   Znf397_predicted  zinc finger protein 397 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Znf397_predicted  zinc finger protein 397 (predicted)      Symbol and Name status set to approved 70820 APPROVED