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Gene: Csrnp1 (cysteine and serine rich nuclear protein 1) Rattus norvegicus

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Symbol:

Csrnp1

Name:

cysteine and serine rich nuclear protein 1

RGD ID:

1305999

Description:

Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including face morphogenesis; platelet-derived growth factor receptor signaling pathway; and roof of mouth development. Predicted to be active in nucleus. Orthologous to human CSRNP1 (cysteine and serine rich nuclear protein 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

AXIN1 up-regulated 1; Axud1; cysteine-serine-rich nuclear protein 1; cysteine/serine-rich nuclear protein 1; LOC363165

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	128,582,364 - 128,594,163 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	128,582,365 - 128,588,469 (-)	Ensembl				GRCr8
mRatBN7.2	8	119,704,712 - 119,717,767 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	119,704,713 - 119,718,183 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	125,286,306 - 125,292,387 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	123,485,338 - 123,491,419 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	121,317,988 - 121,324,069 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	128,659,883 - 128,673,339 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	128,659,868 - 128,672,284 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	127,861,111 - 127,874,483 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	124,933,472 - 124,939,576 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	118,851,298 - 118,857,393 (-)	NCBI		Celera
RGSC_v3.1	8	124,954,224 - 124,959,315 (-)	NCBI
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

dilated cardiomyopathy (ISO)

hepatocellular carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetaldehyde (ISO)

acrolein (ISO)

acrylamide (ISO)

afimoxifene (ISO)

aflatoxin B1 (EXP)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antimycin A (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

atrazine (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

beta-lapachone (ISO)

bis(2-chloroethyl) sulfide (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

C.I. Natural Red 20 (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

Calcimycin (ISO)

calcitriol (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (EXP,ISO)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

cytarabine (ISO)

D-glucose (ISO)

DDE (ISO)

deguelin (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

dieldrin (ISO)

diethyl malate (ISO)

diethyl phthalate (ISO)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

dioxygen (ISO)

disulfiram (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

Enterolactone (ISO)

epoxiconazole (ISO)

fenthion (ISO)

fluoranthene (ISO)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

glucose (ISO)

glyphosate (EXP)

GSK-J4 (ISO)

imidacloprid (EXP)

iron dichloride (ISO)

L-methionine (ISO)

leflunomide (EXP,ISO)

Licochalcone B (ISO)

mercury dichloride (EXP)

methapyrilene (EXP)

methimazole (EXP)

methylisothiazolinone (ISO)

nickel dichloride (EXP)

niclosamide (ISO)

okadaic acid (ISO)

orphenadrine (EXP)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

pentanal (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (EXP,ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propionic acid (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

Shikonin (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

sodium hypochlorite (ISO)

Soman (EXP)

sunitinib (ISO)

T-2 toxin (ISO)

taurodeoxycholic acid (ISO)

testosterone (ISO)

tetrachloroethene (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

thiabendazole (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

torcetrapib (ISO)

triclosan (ISO)

triphenyl phosphate (EXP,ISO)

troglitazone (ISO)

trovafloxacin (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

DNA-templated transcription (IEA)

face morphogenesis (ISO)

platelet-derived growth factor receptor signaling pathway (ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

post-embryonic development (ISO)

regulation of DNA-templated transcription (ISO)

roof of mouth development (ISO)

skeletal system morphogenesis (ISO)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA,ISO)

DNA-binding transcription factor activity (IEA,ISO)

protein binding (ISO)

sequence-specific DNA binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17143286	PMID:17726538	PMID:28830684

Genomics

Comparative Map Data

Csrnp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	128,582,364 - 128,594,163 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	128,582,365 - 128,588,469 (-)	Ensembl				GRCr8
mRatBN7.2	8	119,704,712 - 119,717,767 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	119,704,713 - 119,718,183 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	125,286,306 - 125,292,387 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	123,485,338 - 123,491,419 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	121,317,988 - 121,324,069 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	128,659,883 - 128,673,339 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	128,659,868 - 128,672,284 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	127,861,111 - 127,874,483 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	124,933,472 - 124,939,576 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	118,851,298 - 118,857,393 (-)	NCBI		Celera
RGSC_v3.1	8	124,954,224 - 124,959,315 (-)	NCBI
Cytogenetic Map	8	q32	NCBI

CSRNP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	39,141,855 - 39,154,641 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	39,141,854 - 39,154,852 (-)	Ensembl			hg38	GRCh38
GRCh37	3	39,183,346 - 39,196,132 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	39,158,350 - 39,170,105 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	39,158,350 - 39,170,105	NCBI
Celera	3	39,123,855 - 39,135,613 (-)	NCBI		Celera
Cytogenetic Map	3	p22.2	NCBI
HuRef	3	39,225,267 - 39,236,987 (-)	NCBI		HuRef
CHM1_1	3	39,134,412 - 39,146,149 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	39,154,032 - 39,166,846 (-)	NCBI		T2T-CHM13v2.0

Csrnp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	119,800,229 - 119,813,808 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	119,800,229 - 119,813,724 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	119,971,163 - 119,984,742 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	119,971,163 - 119,984,658 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	119,880,284 - 119,893,776 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	119,819,864 - 119,833,356 (-)	NCBI		MGSCv36	mm8
Celera	9	120,438,418 - 120,451,791 (-)	NCBI		Celera
Cytogenetic Map	9	F4	NCBI
cM Map	9	71.34	NCBI

Csrnp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	24,825,010 - 24,828,988 (+)	Ensembl
ChiLan1.0	NW_004955427	24,825,010 - 24,830,030 (+)	NCBI	ChiLan1.0	ChiLan1.0

CSRNP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	39,093,423 - 39,106,137 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	39,098,185 - 39,110,930 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	39,038,039 - 39,050,754 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	39,318,438 - 39,331,226 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	39,318,438 - 39,331,228 (-)	Ensembl			panPan2	panpan1.1

CSRNP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	8,815,848 - 8,829,062 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	8,817,053 - 8,822,979 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	8,851,706 - 8,864,913 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	9,100,430 - 9,113,613 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	9,100,766 - 9,112,381 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	8,914,084 - 8,927,283 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	9,056,600 - 9,069,784 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	9,049,815 - 9,063,034 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Csrnp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	195,259,949 - 195,272,557 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	28,398,543 - 28,409,962 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	28,398,528 - 28,409,962 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CSRNP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	23,833,134 - 23,845,204 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	23,833,130 - 23,845,198 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	26,092,999 - 26,105,051 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CSRNP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	262,329 - 274,003 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	262,382 - 276,505 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	8,989,494 - 9,001,135 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Csrnp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	1,829,105 - 1,841,216 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624731	1,829,158 - 1,841,216 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Csrnp1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	111,215,505 - 111,227,200 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	665
Count of miRNA genes:	284
Interacting mature miRNAs:	354
Transcripts:	ENSRNOT00000050543
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat

Markers in Region

RH129052

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	119,704,756 - 119,704,954 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	128,659,928 - 128,660,125	NCBI	Rnor6.0
Rnor_5.0	8	127,861,156 - 127,861,353	UniSTS	Rnor5.0
RGSC_v3.4	8	124,933,516 - 124,933,713	UniSTS	RGSC3.4
Celera	8	118,851,342 - 118,851,539	UniSTS
RH 3.4 Map	8	1285.9	UniSTS
Cytogenetic Map	8	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000050543 ⟹ ENSRNOP00000045373

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	128,582,365 - 128,588,469 (-)	Ensembl
mRatBN7.2 Ensembl	8	119,704,715 - 119,718,183 (-)	Ensembl
Rnor_6.0 Ensembl	8	128,659,884 - 128,665,988 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083004 ⟹ ENSRNOP00000071969

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	119,704,713 - 119,715,202 (-)	Ensembl
Rnor_6.0 Ensembl	8	128,659,868 - 128,672,284 (-)	Ensembl

RefSeq Acc Id:

NM_001108786 ⟹ NP_001102256

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	128,582,365 - 128,588,469 (-)	NCBI
mRatBN7.2	8	119,704,713 - 119,710,817 (-)	NCBI
Rnor_6.0	8	128,659,884 - 128,665,988 (-)	NCBI
Rnor_5.0	8	127,861,111 - 127,874,483 (-)	NCBI
RGSC_v3.4	8	124,933,472 - 124,939,576 (-)	RGD
Celera	8	118,851,298 - 118,857,393 (-)	RGD

Sequence:

show sequence

GGAGACTGTACTGGAGACACTACCATGAACCCGGGCTGGAGGGTTCAGAGTCTGGGAGATACCC
TGGAAGGCCGTCTGTCCTCAGCTGCTTGGAACCCCTACATCCCACCATGGCTGGGATACAGAAG
AGGAAGTTTGACCAGCTGGAAGAGGACGACTGCAGCTCCTCCTCCTTGTCCTCTGGCGATCTCT
CTCCCTCTCCTCCCAGCTCTTCTGCCTCCCCTGCCTGGACCTCTGAGGAGGAGGGACTGGGTGA
TCAGCCACCCCAGCCTGATCAGGACTCCAGTGGCATCCAGAGTTTAATGCCCCCATCCATCCTG
AAGCGGGCTCCTCGGGAGCGTCCGGGTCACGTGGCCTTCGATGGCATCACTGTCTACTATTTCC
CGCGGTGCCAGGGATTCACCAGTGTGCCCAGCCATGGTGGCTGTACCCTGGGCATGGCTTCTCG
TCATAGCACCTGCCGCCTCTTCTCCTTAGCCGAGTTTAAACAGGAGCAGTTCCGGGCTCGGCGT
GAGAAGCTCCGTCGGCGTTTAAAGGAGGAGAAGCTAGAGATGCTGAAATGGAAGCTTTCAGTGT
CCGGAGTTCCGGAGGCAGGGGCAGACGTGCCGCTCACAGTGGACGCCATCGATGACGCTTCTGT
AGAGGAGGACTTGGCAGTGGCCGTGGCAGGTGGCCGCCTGGAGGAAGCGAATTTCCTACAGCCC
TATCCACCTCGGCAGCGACGGGCCCTACTTCGCGCTTCCGGTGTTCGAAGGATTGACCGAGAGG
AGAAGCGCGAGCTGCAGGCGCTACGCCAATCCCGGGAGGATTGTGGTTGTCACTGTGATGGCGT
CTGTGACCCTGAGACCTGCAGTTGCATCCTGGCCGGCATTAAATGCCAGATGGATCACACGTCC
TTCCCCTGTGGCTGCTGCAGCGAGGGCTGTGAGAACCCCCATGGTCGAGTGGAATTCAATCAGG
CGAGAGTTCAGACACACTTCATCCACACGCTCACCCGCCTGCAGATGGAGCAGGGTGCGGAGAG
TTTGGGGGACCCGGAGTCCCCCATGGAGGACGTTCCTGTCGAACAAACCGTGGTTTCCCCCTTT
CCTCCTTCCAAACCCACTATGAGCAATGACCTGGGGGACAGCAGCTGTGGCAGCGACATGACAG
ACTCTTCCACGACCTACTCCTCTGGCGGCAGTGGCAGCCGCAGCGAGGCTCCGAACCATCTTGC
CCACCCCAGCCTGCCAGGTTCCAGCTTCCGGTCTGGCATAGATGAAGACAGCCTGGAACAGATC
CTGAATTTCAGTGACTCTGACCTCGGTATTGAGGAAGAAGAGGAGGAGGGAGGGAGTGTGGGCA
ACTTGGATAACCTCAGCTGTTTTCATTTGGCTGACATCTTTGGTACCGGTGACCCCGGCAGCCT
GGCTAGCTGGACACACAGCCAGTTTGGCTCTAGCCTTCCATCGGGCATCCTAGATGAGAATGCC
AACCTGGACGCCAGCTGCTTCCTAAGCAGCGGACTCGAAGGGTTGAGAGAAGGTAGCCTCCCCA
GCAGTTCTGGGTCCCCTGAGGGGGAAGCCGCCCAGAGCAGCTCCTTGGACCTCAGTTTATCCTC
CTGTGACTCCTTTGAGCTTCTCCAATCTCTGCCAGATTATAGTCTGGGGCCTCACTATACTTCC
CGAAGGGTATCTGGCAGCCTGGACAGCCTTGAGACCTTCCACCCTTCGCCCAGCTTCTCTCCAC
CGAGGGATGCCAGCTTCCTGGATTCTCTCATAGGCCTGTCTGAGCCGGTTACAGATGTCCTGGC
GCCCCTTCTGGAGAGCCAGTTTGAGGACACTGCTGTGGTGCCTTTGGACCCTGTGCCTGTGTAA
GGATTGAGATGACTTTTTCCTGCCCTGAGACCCTGTTGCTGCTTTTTATGTGATCTTGGTGTCC
CCCAAGGTCTGTGTATGTAACGGTCTCCCGTGGGCTGGTTCTGCCCCCGTGCCATGTGGGCAAT
CCTCTATTTTTACAGTAACACTCTAGATTTATTTATTTTTTTATGTTTTTCTGTACTGAAGGGA
GGGTGGGAAGGGTATCCCTCTTTCAATGCCTGGCCTCTATGTCCAAACAGAGGTCTCCCACCTC
CTACTGTATGCCTGGAGGAGGAAGGGGCAGGGTTCACATCCCCTCTTTCTGTACTGTAAAATGC
TCCTTGGTCCAAAGACAGCTGAAAAGCAGGCCTTAGGGTTTCCTGTGGACCGTGGGAGCTAGGT
CTTCTGGACTGTGAAGATGTAATTTATTTCTGTAATTTATTTGGGGACTGAGACAGCAGTGGTT
GGGCCTCTCTGGCAGGTGGGCGGTGTTGAGGCAAAGTCTTCGGTGTCCCCCGCCGGTCTGGGCT
TCGGTGTGGCGTGTAGGTTCGAGCTGAGCAGACGGAGGCTGTGCTTGACCATCGGTGATCAAAA
CTCCCTCTGCCCCCTGCCCAGACGCTCTAACATGCCCTCTGTCCATTTCCCTCTCCCCAAGGCC
ATGGGTTATAAAGGCCCTATGTAGGATGGGGAGCCAGAGGCCCTAAGACATGAAGCACACCCCA
GATCACTGTCTCTAGCCTTTCTGGGCACTGAATCCATCCTGACCCACCACACACCCCCCGGCCA
GTTGGCAAGAAAGAGGTGGCTCTTGGGGGCTTTTATGCCCTTCATTAGCTGATGTTGGATTTTA
TATGCATTTTTATATTGTCTCTAAGTGTCAGAACTATAATTTATTCATTTCTCTGTGTGTGTGT
GTGCCAAGAAACGCAGGCTCTGGGCCTGCCTCCTTGCCCAGGAGGCCTTGCCAGCCTGTGTGCT
TGTGAGAACACATTGTACCTGAGCTGACAGGTACCAATAAAGACACTCTATTTTTA

hide sequence

RefSeq Acc Id:

XM_006244120 ⟹ XP_006244182

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	128,582,364 - 128,594,163 (-)	NCBI
mRatBN7.2	8	119,704,712 - 119,716,510 (-)	NCBI
Rnor_6.0	8	128,659,883 - 128,671,664 (-)	NCBI
Rnor_5.0	8	127,861,111 - 127,874,483 (-)	NCBI

Sequence:

show sequence

CGTATGTTCACCTGTCACCGTCACACGCAGAGGCCACTACCGTGAGTCACCGGGCGCAGCTACC
CCGGCCACCCGCGGGCACACGTAGGCTCTCTCCCACGCACCTCTACTCCTTCTGCACACATTTC
CTCTCCTTCCTCAGTTTACCCTTCCCGGAGGTCCTTTCGCCTTCACGTACTGTAGAAATGCCTA
CACCACAGCAACCGCCACACACTAGTCACTCGGGTTGCCGGTACAGTCACTCCTAGACGTAGCC
CACCCCCTGACAACAGAGAATCCCTCCCTGCTCTCTAGCTGCCCACCCAACACCTCTGGACCGA
AGTCTCAGGCTTTTGCCCAGAGCCGTCTGTCCTCAGCTGCTTGGAACCCCTACATCCCACCATG
GCTGGGATACAGAAGAGGAAGTTTGACCAGCTGGAAGAGGACGACTGCAGCTCCTCCTCCTTGT
CCTCTGGCGATCTCTCTCCCTCTCCTCCCAGCTCTTCTGCCTCCCCTGCCTGGACCTCTGAGGA
GGAGGGACTGGGTGATCAGCCACCCCAGCCTGATCAGGACTCCAGTGGCATCCAGAGTTTAATG
CCCCCATCCATCCTGAAGCGGGCTCCTCGGGAGCGTCCGGGTCACGTGGCCTTCGATGGCATCA
CTGTCTACTATTTCCCGCGGTGCCAGGGATTCACCAGTGTGCCCAGCCATGGTGGCTGTACCCT
GGGCATGGCTTCTCGTCATAGCACCTGCCGCCTCTTCTCCTTAGCCGAGTTTAAACAGGAGCAG
TTCCGGGCTCGGCGTGAGAAGCTCCGTCGGCGTTTAAAGGAGGAGAAGCTAGAGATGCTGAAAT
GGAAGCTTTCAGTGTCCGGAGTTCCGGAGGCAGGGGCAGACGTGCCGCTCACAGTGGACGCCAT
CGATGACGCTTCTGTAGAGGAGGACTTGGCAGTGGCCGTGGCAGGTGGCCGCCTGGAGGAAGCG
AATTTCCTACAGCCCTATCCACCTCGGCAGCGACGGGCCCTACTTCGCGCTTCCGGTGTTCGAA
GGATTGACCGAGAGGAGAAGCGCGAGCTGCAGGCGCTACGCCAATCCCGGGAGGATTGTGGTTG
TCACTGTGATGGCGTCTGTGACCCTGAGACCTGCAGTTGCATCCTGGCCGGCATTAAATGCCAG
ATGGATCACACGTCCTTCCCCTGTGGCTGCTGCAGCGAGGGCTGTGAGAACCCCCATGGTCGAG
TGGAATTCAATCAGGCGAGAGTTCAGACACACTTCATCCACACGCTCACCCGCCTGCAGATGGA
GCAGGGTGCGGAGAGTTTGGGGGACCCGGAGTCCCCCATGGAGGACGTTCCTGTCGAACAAACC
GTGGTTTCCCCCTTTCCTCCTTCCAAACCCACTATGAGCAATGACCTGGGGGACAGCAGCTGTG
GCAGCGACATGACAGACTCTTCCACGACCTACTCCTCTGGCGGCAGTGGCAGCCGCAGCGAGGC
TCCGAACCATCTTGCCCACCCCAGCCTGCCAGGTTCCAGCTTCCGGTCTGGCATAGATGAAGAC
AGCCTGGAACAGATCCTGAATTTCAGTGACTCTGACCTCGGTATTGAGGAAGAAGAGGAGGAGG
GAGGGAGTGTGGGCAACTTGGATAACCTCAGCTGTTTTCATTTGGCTGACATCTTTGGTACCGG
TGACCCCGGCAGCCTGGCTAGCTGGACACACAGCCAGTTTGGCTCTAGCCTTCCATCGGGCATC
CTAGATGAGAATGCCAACCTGGACGCCAGCTGCTTCCTAAGCAGCGGACTCGAAGGGTTGAGAG
AAGGTAGCCTCCCCAGCAGTTCTGGGTCCCCTGAGGGGGAAGCCGCCCAGAGCAGCTCCTTGGA
CCTCAGTTTATCCTCCTGTGACTCCTTTGAGCTTCTCCAATCTCTGCCAGATTATAGTCTGGGG
CCTCACTATACTTCCCGAAGGGTATCTGGCAGCCTGGACAGCCTTGAGACCTTCCACCCTTCGC
CCAGCTTCTCTCCACCGAGGGATGCCAGCTTCCTGGATTCTCTCATAGGCCTGTCTGAGCCGGT
TACAGATGTCCTGGCGCCCCTTCTGGAGAGCCAGTTTGAGGACACTGCTGTGGTGCCTTTGGAC
CCTGTGCCTGTGTAAGGATTGAGATGACTTTTTCCTGCCCTGAGACCCTGTTGCTGCTTTTTAT
GTGATCTTGGTGTCCCCCAAGGTCTGTGTATGTAACGGTCTCCCGTGGGCTGGTTCTGCCCCCG
TGCCATGTGGGCAATCCTCTATTTTTACAGTAACACTCTAGATTTATTTATTTTTTTATGTTTT
TCTGTACTGAAGGGAGGGTGGGAAGGGTATCCCTCTTTCAATGCCTGGCCTCTATGTCCAAACA
GAGGTCTCCCACCTCCTACTGTATGCCTGGAGGAGGAAGGGGCAGGGTTCACATCCCCTCTTTC
TGTACTGTAAAATGCTCCTTGGTCCAAAGACAGCTGAAAAGCAGGCCTTAGGGTTTCCTGTGGA
CCGTGGGAGCTAGGTCTTCTGGACTGTGAAGATGTAATTTATTTCTGTAATTTATTTGGGGACT
GAGACAGCAGTGGTTGGGCCTCTCTGGCAGGTGGGCGGTGTTGAGGCAAAGTCTTCGGTGTCCC
CCGCCGGTCTGGGCTTCGGTGTGGCGTGTAGGTTCGAGCTGAGCAGACGGAGGCTGTGCTTGAC
CATCGGTGATCAAAACTCCCTCTGCCCCCTGCCCAGACGCTCTAACATGCCCTCTGTCCATTTC
CCTCTCCCCAAGGCCATGGGTTATAAAGGCCCTATGTAGGATGGGGAGCCAGAGGCCCTAAGAC
ATGAAGCACACCCCAGATCACTGTCTCTAGCCTTTCTGGGCACTGAATCCATCCTGACCCACCA
CACACCCCCCGGCCAGTTGGCAAGAAAGAGGTGGCTCTTGGGGGCTTTTATGCCCTTCATTAGC
TGATGTTGGATTTTATATGCATTTTTATATTGTCTCTAAGTGTCAGAACTATAATTTATTCATT
TCTCTGTGTGTGTGTGTGCCAAGAAACGCAGGCTCTGGGCCTGCCTCCTTGCCCAGGAGGCCTT
GCCAGCCTGTGTGCTTGTGAGAACACATTGTACCTGAGCTGACAGGTACCAATAAAGACACTCT
ATTTTTAA

hide sequence

RefSeq Acc Id:

XM_006244121 ⟹ XP_006244183

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	128,582,364 - 128,593,790 (-)	NCBI
mRatBN7.2	8	119,704,712 - 119,716,139 (-)	NCBI
Rnor_6.0	8	128,659,883 - 128,667,147 (-)	NCBI
Rnor_5.0	8	127,861,111 - 127,874,483 (-)	NCBI

Sequence:

show sequence

TTGAGCCTCTCCCATGTCTGCCTGGAGGAGATGGCTGTCACTCTCCCATGAGTGCTTTTATCCA
GGGAGTTGTAGCTGGTGCCCTCGGATTTAGGACCTGCCAGAGGCTTGGACTAGGAGAGGGGACC
TCAGGCTACCTCAGTGGAGGAGACCCAGACAGCTTTCTGCTTGGTTTCCCTGCCTCTTTCACTT
CCCGTGATGATGGTGGGGGAAGGGTCCCAGCTGTGGGCATTCAACCCTGAATGAGTGAGTACCA
CAGACTCAAGCCAGCCTCACGGCAGGTAGCTGCACTCAGCCACCATCCTTGAACCCTCTGAGGG
TCCCCAAGTCCTGGAAAGACTGTTACTTGTCCAAGCACTGGAGGGTTAGGGAAGGAGCCTGACT
GGCCGTCTGTCCTCAGCTGCTTGGAACCCCTACATCCCACCATGGCTGGGATACAGAAGAGGAA
GTTTGACCAGCTGGAAGAGGACGACTGCAGCTCCTCCTCCTTGTCCTCTGGCGATCTCTCTCCC
TCTCCTCCCAGCTCTTCTGCCTCCCCTGCCTGGACCTCTGAGGAGGAGGGACTGGGTGATCAGC
CACCCCAGCCTGATCAGGACTCCAGTGGCATCCAGAGTTTAATGCCCCCATCCATCCTGAAGCG
GGCTCCTCGGGAGCGTCCGGGTCACGTGGCCTTCGATGGCATCACTGTCTACTATTTCCCGCGG
TGCCAGGGATTCACCAGTGTGCCCAGCCATGGTGGCTGTACCCTGGGCATGGCTTCTCGTCATA
GCACCTGCCGCCTCTTCTCCTTAGCCGAGTTTAAACAGGAGCAGTTCCGGGCTCGGCGTGAGAA
GCTCCGTCGGCGTTTAAAGGAGGAGAAGCTAGAGATGCTGAAATGGAAGCTTTCAGTGTCCGGA
GTTCCGGAGGCAGGGGCAGACGTGCCGCTCACAGTGGACGCCATCGATGACGCTTCTGTAGAGG
AGGACTTGGCAGTGGCCGTGGCAGGTGGCCGCCTGGAGGAAGCGAATTTCCTACAGCCCTATCC
ACCTCGGCAGCGACGGGCCCTACTTCGCGCTTCCGGTGTTCGAAGGATTGACCGAGAGGAGAAG
CGCGAGCTGCAGGCGCTACGCCAATCCCGGGAGGATTGTGGTTGTCACTGTGATGGCGTCTGTG
ACCCTGAGACCTGCAGTTGCATCCTGGCCGGCATTAAATGCCAGATGGATCACACGTCCTTCCC
CTGTGGCTGCTGCAGCGAGGGCTGTGAGAACCCCCATGGTCGAGTGGAATTCAATCAGGCGAGA
GTTCAGACACACTTCATCCACACGCTCACCCGCCTGCAGATGGAGCAGGGTGCGGAGAGTTTGG
GGGACCCGGAGTCCCCCATGGAGGACGTTCCTGTCGAACAAACCGTGGTTTCCCCCTTTCCTCC
TTCCAAACCCACTATGAGCAATGACCTGGGGGACAGCAGCTGTGGCAGCGACATGACAGACTCT
TCCACGACCTACTCCTCTGGCGGCAGTGGCAGCCGCAGCGAGGCTCCGAACCATCTTGCCCACC
CCAGCCTGCCAGGTTCCAGCTTCCGGTCTGGCATAGATGAAGACAGCCTGGAACAGATCCTGAA
TTTCAGTGACTCTGACCTCGGTATTGAGGAAGAAGAGGAGGAGGGAGGGAGTGTGGGCAACTTG
GATAACCTCAGCTGTTTTCATTTGGCTGACATCTTTGGTACCGGTGACCCCGGCAGCCTGGCTA
GCTGGACACACAGCCAGTTTGGCTCTAGCCTTCCATCGGGCATCCTAGATGAGAATGCCAACCT
GGACGCCAGCTGCTTCCTAAGCAGCGGACTCGAAGGGTTGAGAGAAGGTAGCCTCCCCAGCAGT
TCTGGGTCCCCTGAGGGGGAAGCCGCCCAGAGCAGCTCCTTGGACCTCAGTTTATCCTCCTGTG
ACTCCTTTGAGCTTCTCCAATCTCTGCCAGATTATAGTCTGGGGCCTCACTATACTTCCCGAAG
GGTATCTGGCAGCCTGGACAGCCTTGAGACCTTCCACCCTTCGCCCAGCTTCTCTCCACCGAGG
GATGCCAGCTTCCTGGATTCTCTCATAGGCCTGTCTGAGCCGGTTACAGATGTCCTGGCGCCCC
TTCTGGAGAGCCAGTTTGAGGACACTGCTGTGGTGCCTTTGGACCCTGTGCCTGTGTAAGGATT
GAGATGACTTTTTCCTGCCCTGAGACCCTGTTGCTGCTTTTTATGTGATCTTGGTGTCCCCCAA
GGTCTGTGTATGTAACGGTCTCCCGTGGGCTGGTTCTGCCCCCGTGCCATGTGGGCAATCCTCT
ATTTTTACAGTAACACTCTAGATTTATTTATTTTTTTATGTTTTTCTGTACTGAAGGGAGGGTG
GGAAGGGTATCCCTCTTTCAATGCCTGGCCTCTATGTCCAAACAGAGGTCTCCCACCTCCTACT
GTATGCCTGGAGGAGGAAGGGGCAGGGTTCACATCCCCTCTTTCTGTACTGTAAAATGCTCCTT
GGTCCAAAGACAGCTGAAAAGCAGGCCTTAGGGTTTCCTGTGGACCGTGGGAGCTAGGTCTTCT
GGACTGTGAAGATGTAATTTATTTCTGTAATTTATTTGGGGACTGAGACAGCAGTGGTTGGGCC
TCTCTGGCAGGTGGGCGGTGTTGAGGCAAAGTCTTCGGTGTCCCCCGCCGGTCTGGGCTTCGGT
GTGGCGTGTAGGTTCGAGCTGAGCAGACGGAGGCTGTGCTTGACCATCGGTGATCAAAACTCCC
TCTGCCCCCTGCCCAGACGCTCTAACATGCCCTCTGTCCATTTCCCTCTCCCCAAGGCCATGGG
TTATAAAGGCCCTATGTAGGATGGGGAGCCAGAGGCCCTAAGACATGAAGCACACCCCAGATCA
CTGTCTCTAGCCTTTCTGGGCACTGAATCCATCCTGACCCACCACACACCCCCCGGCCAGTTGG
CAAGAAAGAGGTGGCTCTTGGGGGCTTTTATGCCCTTCATTAGCTGATGTTGGATTTTATATGC
ATTTTTATATTGTCTCTAAGTGTCAGAACTATAATTTATTCATTTCTCTGTGTGTGTGTGTGCC
AAGAAACGCAGGCTCTGGGCCTGCCTCCTTGCCCAGGAGGCCTTGCCAGCCTGTGTGCTTGTGA
GAACACATTGTACCTGAGCTGACAGGTACCAATAAAGACACTCTATTTTTAA

hide sequence

RefSeq Acc Id:

XM_039081812 ⟹ XP_038937740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	128,582,364 - 128,589,236 (-)	NCBI
mRatBN7.2	8	119,704,712 - 119,711,585 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102256	(Get FASTA)	NCBI Sequence Viewer
	NP_001423462	(Get FASTA)	NCBI Sequence Viewer
	NP_001423463	(Get FASTA)	NCBI Sequence Viewer
	NP_001423464	(Get FASTA)	NCBI Sequence Viewer
	XP_006244182	(Get FASTA)	NCBI Sequence Viewer
	XP_006244183	(Get FASTA)	NCBI Sequence Viewer
	XP_038937740	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL76892	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000045373
	ENSRNOP00000045373.3

RefSeq Acc Id:

NP_001102256 ⟸ NM_001108786

- UniProtKB:

D4AAK3 (UniProtKB/TrEMBL), A6I3Y5 (UniProtKB/TrEMBL), A0A0G2K1S7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGIQKRKFDQLEEDDCSSSSLSSGDLSPSPPSSSASPAWTSEEEGLGDQPPQPDQDSSGIQSL
MPPSILKRAPRERPGHVAFDGITVYYFPRCQGFTSVPSHGGCTLGMASRHSTCRLFSLAEFKQE
QFRARREKLRRRLKEEKLEMLKWKLSVSGVPEAGADVPLTVDAIDDASVEEDLAVAVAGGRLEE
ANFLQPYPPRQRRALLRASGVRRIDREEKRELQALRQSREDCGCHCDGVCDPETCSCILAGIKC
QMDHTSFPCGCCSEGCENPHGRVEFNQARVQTHFIHTLTRLQMEQGAESLGDPESPMEDVPVEQ
TVVSPFPPSKPTMSNDLGDSSCGSDMTDSSTTYSSGGSGSRSEAPNHLAHPSLPGSSFRSGIDE
DSLEQILNFSDSDLGIEEEEEEGGSVGNLDNLSCFHLADIFGTGDPGSLASWTHSQFGSSLPSG
ILDENANLDASCFLSSGLEGLREGSLPSSSGSPEGEAAQSSSLDLSLSSCDSFELLQSLPDYSL
GPHYTSRRVSGSLDSLETFHPSPSFSPPRDASFLDSLIGLSEPVTDVLAPLLESQFEDTAVVPL
DPVPV

hide sequence

RefSeq Acc Id:

XP_006244182 ⟸ XM_006244120

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAGIQKRKFDQLEEDDCSSSSLSSGDLSPSPPSSSASPAWTSEEEGLGDQPPQPDQDSSGIQSL
MPPSILKRAPRERPGHVAFDGITVYYFPRCQGFTSVPSHGGCTLGMASRHSTCRLFSLAEFKQE
QFRARREKLRRRLKEEKLEMLKWKLSVSGVPEAGADVPLTVDAIDDASVEEDLAVAVAGGRLEE
ANFLQPYPPRQRRALLRASGVRRIDREEKRELQALRQSREDCGCHCDGVCDPETCSCILAGIKC
QMDHTSFPCGCCSEGCENPHGRVEFNQARVQTHFIHTLTRLQMEQGAESLGDPESPMEDVPVEQ
TVVSPFPPSKPTMSNDLGDSSCGSDMTDSSTTYSSGGSGSRSEAPNHLAHPSLPGSSFRSGIDE
DSLEQILNFSDSDLGIEEEEEEGGSVGNLDNLSCFHLADIFGTGDPGSLASWTHSQFGSSLPSG
ILDENANLDASCFLSSGLEGLREGSLPSSSGSPEGEAAQSSSLDLSLSSCDSFELLQSLPDYSL
GPHYTSRRVSGSLDSLETFHPSPSFSPPRDASFLDSLIGLSEPVTDVLAPLLESQFEDTAVVPL
DPVPV

hide sequence

RefSeq Acc Id:

XP_006244183 ⟸ XM_006244121

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAGIQKRKFDQLEEDDCSSSSLSSGDLSPSPPSSSASPAWTSEEEGLGDQPPQPDQDSSGIQSL
MPPSILKRAPRERPGHVAFDGITVYYFPRCQGFTSVPSHGGCTLGMASRHSTCRLFSLAEFKQE
QFRARREKLRRRLKEEKLEMLKWKLSVSGVPEAGADVPLTVDAIDDASVEEDLAVAVAGGRLEE
ANFLQPYPPRQRRALLRASGVRRIDREEKRELQALRQSREDCGCHCDGVCDPETCSCILAGIKC
QMDHTSFPCGCCSEGCENPHGRVEFNQARVQTHFIHTLTRLQMEQGAESLGDPESPMEDVPVEQ
TVVSPFPPSKPTMSNDLGDSSCGSDMTDSSTTYSSGGSGSRSEAPNHLAHPSLPGSSFRSGIDE
DSLEQILNFSDSDLGIEEEEEEGGSVGNLDNLSCFHLADIFGTGDPGSLASWTHSQFGSSLPSG
ILDENANLDASCFLSSGLEGLREGSLPSSSGSPEGEAAQSSSLDLSLSSCDSFELLQSLPDYSL
GPHYTSRRVSGSLDSLETFHPSPSFSPPRDASFLDSLIGLSEPVTDVLAPLLESQFEDTAVVPL
DPVPV

hide sequence

Ensembl Acc Id:

ENSRNOP00000071969 ⟸ ENSRNOT00000083004

Ensembl Acc Id:

ENSRNOP00000045373 ⟸ ENSRNOT00000050543

RefSeq Acc Id:	XP_038937740 ⟸ XM_039081812
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K1S7 (UniProtKB/TrEMBL)

Protein Domains

Cysteine/serine-rich nuclear protein N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AAK3-F1-model_v2	AlphaFold	D4AAK3	1-581	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696379

Promoter ID:

EPDNEW_R6903

Type:

multiple initiation site

Name:

Csrnp1_1

Description:

cysteine and serine rich nuclear protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	128,672,325 - 128,672,385	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305999	AgrOrtholog
BioCyc Gene	G2FUF-28774	BioCyc
Ensembl Genes	ENSRNOG00000033433	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000050543	ENTREZGENE
	ENSRNOT00000050543.5	UniProtKB/TrEMBL
InterPro	CSRNP_N	UniProtKB/TrEMBL
	Cys/Ser-rich_nuc_prot	UniProtKB/TrEMBL
KEGG Report	rno:363165	UniProtKB/TrEMBL
NCBI Gene	363165	ENTREZGENE
PANTHER	Cys/Ser-rich_nuc_prot	UniProtKB/TrEMBL
	CYSTEINE/SERINE-RICH NUCLEAR PROTEIN 1	UniProtKB/TrEMBL
Pfam	CSRNP_N	UniProtKB/TrEMBL
PhenoGen	Csrnp1	PhenoGen
PRINTS	CYSSERRICHNP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000033433	RatGTEx
UniProt	A0A0G2K1S7	ENTREZGENE
	A6I3Y5	ENTREZGENE, UniProtKB/TrEMBL
	D4AAK3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-15	Csrnp1	cysteine and serine rich nuclear protein 1	Csrnp1	cysteine-serine-rich nuclear protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-05-06	Csrnp1	cysteine-serine-rich nuclear protein 1	Axud1	AXIN1 up-regulated 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Axud1	AXIN1 up-regulated 1	Axud1_predicted	AXIN1 up-regulated 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Axud1_predicted	AXIN1 up-regulated 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD