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Gene: Efr3a (EFR3 homolog A) Rattus norvegicus

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Symbol:

Efr3a

Name:

EFR3 homolog A

RGD ID:

1305976

Description:

Predicted to be involved in protein localization to plasma membrane and synaptic vesicle priming. Predicted to be located in membrane and presynapse. Predicted to be active in glutamatergic synapse and plasma membrane. Orthologous to human EFR3A (EFR3 homolog A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aconitine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

EFR3 homolog A (S. cerevisiae); LOC362923; RGD1305976; similar to RIKEN cDNA C920006C10

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EFR3A (EFR3 homolog A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Efr3a (EFR3 homolog A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Efr3a (EFR3 homolog A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EFR3A (EFR3 homolog A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EFR3A (EFR3 homolog A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Efr3a (EFR3 homolog A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EFR3A (EFR3 homolog A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EFR3A (EFR3 homolog A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Efr3a (EFR3 homolog A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Efr3a (EFR3 homolog A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Efr3a (EFR3 homolog A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Efr3a (EFR3 homolog A)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	EFR3A (EFR3 homolog A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	EFR3A (EFR3 homolog A)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	efr3a (EFR3 homolog A (S. cerevisiae))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	efr3a (EFR3 homolog A (S. cerevisiae))	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	EFR3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)
Caenorhabditis elegans (roundworm):	efr-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	efr-3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	stmA	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	stmA	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	efr3a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	efr3a	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	99,441,764 - 99,522,454 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	99,441,767 - 99,522,454 (+)	Ensembl				GRCr8
mRatBN7.2	7	97,552,677 - 97,633,369 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	97,552,677 - 97,633,369 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	99,306,220 - 99,386,911 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	101,507,880 - 101,588,569 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	101,427,222 - 101,507,909 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	106,535,428 - 106,616,805 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	106,535,434 - 106,616,805 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	106,483,576 - 106,564,947 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	103,147,405 - 103,228,104 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	94,107,584 - 94,188,271 (+)	NCBI		Celera
RGSC_v3.1	7	103,181,640 - 103,262,319 (+)	NCBI
Cytogenetic Map	7	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aconitine (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

caffeine (ISO)

carbamazepine (ISO)

chloroprene (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

entinostat (ISO)

ethanol (ISO)

fenvalerate (EXP)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

genistein (ISO)

glafenine (EXP)

indometacin (ISO)

methapyrilene (EXP)

methylmercury chloride (ISO)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

potassium chromate (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (EXP)

silicon dioxide (ISO)

sunitinib (ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

protein localization to plasma membrane (IBA,ISO)

synaptic vesicle priming (ISO)

Cellular Component

cytosol (ISO)

glutamatergic synapse (ISO)

plasma membrane (IBA,IEA,ISO)

presynapse (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:15363888	PMID:22871113	PMID:23229899	PMID:23376485

Genomics

Comparative Map Data

Efr3a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	99,441,764 - 99,522,454 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	99,441,767 - 99,522,454 (+)	Ensembl				GRCr8
mRatBN7.2	7	97,552,677 - 97,633,369 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	97,552,677 - 97,633,369 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	99,306,220 - 99,386,911 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	101,507,880 - 101,588,569 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	101,427,222 - 101,507,909 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	106,535,428 - 106,616,805 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	106,535,434 - 106,616,805 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	106,483,576 - 106,564,947 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	103,147,405 - 103,228,104 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	94,107,584 - 94,188,271 (+)	NCBI		Celera
RGSC_v3.1	7	103,181,640 - 103,262,319 (+)	NCBI
Cytogenetic Map	7	q33	NCBI

EFR3A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	131,904,093 - 132,013,642 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	131,904,077 - 132,013,642 (+)	Ensembl			hg38	GRCh38
GRCh37	8	132,916,340 - 133,025,889 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	132,985,541 - 133,094,956 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	8	129,092,075 - 129,201,496 (+)	NCBI		Celera
Cytogenetic Map	8	q24.22	NCBI
HuRef	8	128,233,937 - 128,343,448 (+)	NCBI		HuRef
CHM1_1	8	132,956,757 - 133,066,224 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	133,027,004 - 133,136,550 (+)	NCBI		T2T-CHM13v2.0

Efr3a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	65,658,852 - 65,745,661 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	65,658,883 - 65,745,665 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	65,787,020 - 65,873,812 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	65,787,034 - 65,873,816 (+)	Ensembl			mm10	GRCm38
MGSCv37	15	65,618,603 - 65,705,374 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	65,616,714 - 65,703,485 (+)	NCBI		MGSCv36	mm8
Celera	15	67,294,721 - 67,381,478 (+)	NCBI		Celera
Cytogenetic Map	15	D1	NCBI
cM Map	15	29.12	NCBI

Efr3a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955461	6,588,026 - 6,687,499 (+)	Ensembl
ChiLan1.0	NW_004955461	6,588,178 - 6,687,499 (+)	NCBI	ChiLan1.0	ChiLan1.0

EFR3A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	149,287,874 - 149,397,101 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	124,802,328 - 124,911,673 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	128,553,529 - 128,662,782 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	131,530,743 - 131,639,642 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	131,530,751 - 131,639,637 (+)	Ensembl			panPan2	panpan1.1

EFR3A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	28,571,080 - 28,676,379 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	28,570,957 - 28,674,138 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	28,543,776 - 28,649,207 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	28,925,212 - 29,030,960 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	28,923,991 - 29,030,950 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	28,652,608 - 28,758,118 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	28,752,177 - 28,857,760 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	29,064,268 - 29,169,740 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Efr3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	9,679,583 - 9,770,042 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	17,105,682 - 17,196,448 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	17,105,682 - 17,196,399 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EFR3A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	9,053,086 - 9,137,265 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	9,053,439 - 9,137,289 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

EFR3A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	126,355,535 - 126,458,427 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	126,355,476 - 126,458,501 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	13,650,007 - 13,752,924 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Efr3a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	23,873,431 - 23,964,093 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624735	23,875,299 - 23,964,030 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Efr3a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	239,947,342 - 240,035,838 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Efr3a
591 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	734
Count of miRNA genes:	291
Interacting mature miRNAs:	377
Transcripts:	ENSRNOT00000045357
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	92388565	119280177	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	82111245	123048330	Rat
2317035	Aia16	Adjuvant induced arthritis QTL 16	2.71		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	71103011	106126789	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
1298525	Cm1	Cardiac mass QTL 1	2.7		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	7	56625161	101625161	Rat
1357338	Stl17	Serum triglyceride level QTL 17	3.23		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	71621154	114982716	Rat
70159	Bp61	Blood pressure QTL 61		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	73618702	118618702	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	93302009	131686183	Rat
61397	Bw17	Body weight QTL 17	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	7	95485047	137014596	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	85043242	130043242	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	85497398	130497398	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	92362341	137014596	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	83626689	128626689	Rat
1331723	Bw25	Body weight QTL 25	3.348		body mass (VT:0001259)	body weight (CMO:0000012)	7	96700404	111672180	Rat
631529	Tls2	T-lymphoma susceptibility QTL 2	0	0.001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	7	82111382	132099989	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	98549867	137014596	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	55498584	105834451	Rat
1559283	Emca4	Estrogen-induced mammary cancer QTL 4	3.7		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	7	63889858	108889858	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
631201	Panci1	Pancreas inflammation QTL 1	0	0.001	pancreas integrity trait (VT:0010560)	percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)	7	73557047	118557047	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	82111245	123048330	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
2313102	Bmd79	Bone mineral density QTL 79	2.3	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	7	96700404	118618702	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
10450862	Kidm55	Kidney mass QTL 55	4.9		kidney mass (VT:0002707)	kidney weight (CMO:0000081)	7	72725037	117725037	Rat
1298528	Bp169	Blood pressure QTL 169		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	62963207	107963207	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	82111245	134948181	Rat
1576303	Ept7	Estrogen-induced pituitary tumorigenesis QTL 7	3.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	7	63889858	108889858	Rat
10450856	Livw4	Liver weight QTL 4	3.8		liver mass (VT:0003402)	liver weight (CMO:0000092)	7	72725037	117725037	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	78682549	123682549	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	71621154	119349044	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	71827901	136544683	Rat

Markers in Region

BF403636

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	97,626,396 - 97,626,563 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	106,609,833 - 106,609,999	NCBI	Rnor6.0
Rnor_5.0	7	106,557,975 - 106,558,141	UniSTS	Rnor5.0
RGSC_v3.4	7	103,221,132 - 103,221,298	UniSTS	RGSC3.4
Celera	7	94,181,299 - 94,181,465	UniSTS
RH 3.4 Map	7	671.0	UniSTS
Cytogenetic Map	7	q33	UniSTS

BI301673

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	97,584,622 - 97,584,815 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	106,567,523 - 106,567,715	NCBI	Rnor6.0
Rnor_5.0	7	106,515,665 - 106,515,857	UniSTS	Rnor5.0
RGSC_v3.4	7	103,179,351 - 103,179,543	UniSTS	RGSC3.4
Celera	7	94,139,529 - 94,139,721	UniSTS
RH 3.4 Map	7	671.4	UniSTS
Cytogenetic Map	7	q33	UniSTS

RH140640

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	7	106,563,769 - 106,563,966	NCBI	Rnor5.0
RGSC_v3.4	7	103,226,927 - 103,227,123	UniSTS	RGSC3.4
Celera	17	62,635,409 - 62,635,605	UniSTS
Celera	7	94,187,094 - 94,187,290	UniSTS
Cytogenetic Map	7	q33	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001130564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000045357 ⟹ ENSRNOP00000048877

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	99,441,767 - 99,522,454 (+)	Ensembl
mRatBN7.2 Ensembl	7	97,552,677 - 97,633,369 (+)	Ensembl
Rnor_6.0 Ensembl	7	106,535,434 - 106,616,805 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102392 ⟹ ENSRNOP00000090413

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	99,441,784 - 99,521,237 (+)	Ensembl
mRatBN7.2 Ensembl	7	97,552,702 - 97,631,046 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107204 ⟹ ENSRNOP00000077887

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	99,470,322 - 99,522,454 (+)	Ensembl
mRatBN7.2 Ensembl	7	97,581,232 - 97,633,369 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000165815 ⟹ ENSRNOP00000106693

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	99,466,535 - 99,522,454 (+)	Ensembl

RefSeq Acc Id:

NM_001130564 ⟹ NP_001124036

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	99,441,767 - 99,522,454 (+)	NCBI
mRatBN7.2	7	97,552,677 - 97,633,369 (+)	NCBI
Rnor_6.0	7	106,535,434 - 106,616,805 (+)	NCBI
Rnor_5.0	7	106,483,576 - 106,564,947 (+)	NCBI
RGSC_v3.4	7	103,147,405 - 103,228,104 (+)	RGD
Celera	7	94,107,584 - 94,188,271 (+)	RGD

Sequence:

show sequence

GTGGGTCGGCCCAACGCGTCGTCGACGGGGCGCGGATCGCGGCCGGTGGTAGCTGTACCCGGTC
AGCGTCCGCTCGCTCGGCTATTCGTCCTCCGCCCCGACGAGGCGTCCGTGGCCGGGCTTCCGCA
GTCATGCTGTGGTCGACGCGGCTCGCGCTGCCCCTCTGAGTCCCGGGACGGCGGCGAGCGCGGC
GAGCTCGGGTCGCCATGCCTACCCGAGTGTGCTGCTGCTGCTCTGCTTTGCGTCCTCGATACAA
ACGTCTGGTGGACAACATATTCCCTGAAGATCCCAAAGATGGCCTTGTTAAAGCTGATATGGAG
AAACTGACATTTTATGCAGTGTCTGCACCAGAGAAGCTCGATCGGATTGGTGCCTACCTGGCAG
AGAGGCTGAGCAGGGATGTTGTCAGACACCGCTCTGGATACGTTCTAATCGCTATGGAGGCGTT
GGACCAGCTTCTCATGGCCTGCCATTCTCAAAGCATCAAGCCATTTGTAGAAAGCTTCCTTCAC
ATGGTAGCAAAGCTCCTGGAATCAGGGGAACCAAAGCTTCAAGTTCTTGGAACAAATTCTTTTG
TCAAATTTGCAAATATTGAAGAAGATACACCGTCCTATCATAGACGTTATGACTTCTTTGTATC
TCGATTCAGTGCCATGTGTCACTCCTGTCATAGTGATCCAGAAATACGAACCGAGATTCGCATT
GCTGGAATAAGAGGTATTCAAGGTGTGGTTCGCAAAACAGTTAATGATGAACTTCGGGCTACCA
TTTGGGAACCACAGCATATGGATAAGATTGTTCCATCCCTTTTGTTTAACATGCAGAAGATAGA
AGAAGTTGACAGTCGCCTAGGCCCACCTTCTTCCCCCTCTGCAGCTGACAAAGAAGAGAACCCT
GCAGTGCTGGCAGAGAGCTGTTTCAGAGAATTGCTGGGCAGAGCAACTTTTGGGAATATGAATA
ATGCCGTTAGGCCAGTTTTTGCGCATTTAGATCATCACAAGCTGTGGGATCCTAATGAGTTTGC
AGTTCACTGCTTTAAGATTATAATGTATTCTATTCAGGCCCAGTATTCTCACCATGTGATCCAG
GAAATTCTTGGACACCTTGATGCTCGTAAGAAGGATTCTCCACGGGTTCGAGCAGGTATCATTC
AGGTTCTGTTAGAGGCTGTCGCCATTGCTGCTAAAGGTTCTATAGGTCCAACTGTGTTAGAAGT
CTTCAACACCCTGTTGAAGCACCTGCGGCTCAGCGTGGAACTGGAAGCCAGTGACTCCCAGAAG
GGCTCTGTAGGCAGCGTCTCCCTAAGCTCCAAAGACAACGATGAGAAGATTGTGCAGAACGCTG
TCATCCAGACAATAGGATTTTTTGGAAGTAACTTACCAGACTATCAGAGGTCAGAGATCATGAT
GTTCATCATGGGGAAAGTGCCTGTTTTTGGAACATCCACTCATACTTTGGATATCAGCCAACTA
GGGGATTTAGGAACCAGGAGGATTCAGATAATGTTGCTGAGGTCTTTGCTCATGGTGACGTCTG
GATACAAAGCCAAGACAATTGTTACTGCACTGCCTGGGTCATTTCTGGATCCTCTATTGTCACC
ATCCCTCATGGAAGACTATGAGCTGAGGCAGTTAGTCTTGGAAGTGATGCACAACCTAATGGAC
CGCCATGACAACAGAGCGAAGCTCCGTGGCATCAGAATAATTCCAGATGTGGCTGACTTGAAGA
TAAAAAGAGAGAAAATCTGTAGACAAGATACAAGCTTCATGAAAAAGAATGGGCAACAGCTATA
TAGGCACATATATCTGGGCTGCAAAGAAGAAGACAACGTTCAGAAAAACTATGAGCTTCTTTAT
ACATCTCTCGCTCTGATAACTATCGAACTTGCCAATGAAGAGGTGGTTATCGACCTCATTCGAT
TGGCCATTGCTTTACAGGACAGTGCAATTATCAATGAAGATAATCTGCCAATGTTTCATCGTTG
TGGGATTATGGCACTGGTTGCAGCCTATCTCAACTTTGTGAGTCAAATGATAGCTGTTCCAGCA
TTCTGCCAGCATGTTAGCAAGGTTATTGAAACTCGAACTATGGAAGCCCCTTATTTTCTACCAG
AGCATATTTTCAGAGATAAGTGCATGCTTCCGAAATCTTTAGAGAAGCATGACAAAAATTTATA
TTTTCTGACCAACAAGATTGCAGAATCCCTGGGTGGAAGCGGGTACAGTGTGGAGAGGCTGTCG
GTTCCTTATGTGCCACAGGTGACAGATGAAGATCGCCTTTCTAGAAGAAAAAGTATTGTGGATA
CTGTATCTATTCAGGTGGATATTTTATCCAACAGTGTGCCTTCTGATGATGTGGTTAGCAACAC
TGAAGAAATCACTTTTGAAGCACTGAAGAAAGCAATTGATACCAATGGAATGGAAGAACAGGAA
AAGGAAAAGAGACGTCTTGTGATAGAGAAGTTCCAGAAAGCACCATTTGAAGAAATAGCAGCAC
AGTGTGAATCCAAAGCAAATTTGCTTCATGATAGACTTGCTCAAATATTGGAGCTCACCATACG
GCCTCCTCCCAGTCCATCTGGAACATTGACTGTTACTTCTGGGCATGCCCAATACCAGTCCGTC
CCGGTCTATGAGATGAAGTTTCCAGATCTGTGTGTATATTAACTGGCTCATGAAGACTACAGCA
TTTAAAAAGGATCTTAAAACCTGAAAAACAGGGCCAAGACGAGTTTCAGGATTTGCATAAGGCT
TACTGGAATGTCCTGAAGTGTTATGGGACTTGTCTCTACCAACACTTGTCATGCTGTATTAGAG
GTTTAGGGCCCCTGATTTAGTACCTCTGGAGATAAGCTTATACCACATTAATTTGTTTCGAGGT
TCCTGTTAGATTTAAGACTGAACATGTATTGCTTTCACATTATGCTCTTGTTTAATAGTATATT
TTAAACTTTGCACAAACATGATTTTAAAAAATGATTGAAAAATGTATTAAGTGTCTGCTCCACT
GCTTAAAAATGGATTGCTTTTATTTTCTTTTCTTCAAAAGTAAATATATTCCTAATTTTAGGGT
TGCAAATTCTCTCGTGCTTTCTCAATCCATGCTTCAGATGGACTGTGTAGGCATCCCGTCAGTC
CTCCATAGTAACATGCGGCAGGCATTCCTAGGGAGCCCGTGTAGACTGTGTAGACATCCCATCA
GTCCTCCATAGTAACATGCGGCAGGCATTCCTAGGGTGCCCGTGTAGACTGTGTAGGCATCCCG
TCAGTCCTCCATAGTAACATGTGGCAGGCATCCCTGGGGTGCCCGTGATAGAAAATATCTCGTG
GATAGCATTCCACCCAGGTTCCCATCTGGAACTGGTCTTGTGATACTATGTTTTCTGCTTCAAG
TTGAGCTCTTGAGCCCCTTAAAGCTCACTCTTGGAGTGGGAAAAAGGTAAAGTGTTTTTCATAT
ATAATGTGTTAGTTTACAGACTGCGCTTTGAAACTATAGTTGTATTTTCCTGTGATTCCATTAA
ATGAAATATATATTTACTATAGAAAAGAAAGACATTTAAAACAGCTACCTGTTCACCTGTGCAG
AGTCCATAAATTTCAGTTTCTTAATGAATTAATTTACATTTTATATTGACGTTTTAAGTCTTCA
TTGTACAAAAATTCTCCCAGTGAATCTTTTAATTTGTAAGAGTTGAACCAAAACTTATATACAT
CTCTATGAAGATTAGTTATATACTTCAAAATAGTCTGTGTGTTCTTGCTACGTTGTGTGAGTGT
AAGCTGCCTGTCACTTGTGAGACTTGTAAGACTACAAGGGCAGTATGTACTGCACATGCTAGCG
ACACCACCGCATGCTAAACAGAAGAATTCTGCAGTTAGAAAATTCTCCTAGCACAGTTTTGTGG
AATCACTTTGTATAACTCTACCTTTTCAAATTCAGTTTCTTTTTACATAAAACAGTATTCCTGT
CAAAAAGTATAGATCAAAAATAATTCAGTTTTAGTTTTGTTTTTGTTTGAAGAAACGAGATAAA
ATATAGGGTGTTTTATCAGTGTGTTTTTTGGTTATTTGGGCATCATTAGTAGAAAAAGGGAAAA
AAAAAAGAAAGAAAAAGAAAAAAGAAAGAGACCAGGCATGCCCAAAGCTCTGAATATTTACAGC
CAAGTAGACCATCTTGAAGAGGGGTCCATTTGCTATCACCTCTGACAGGACAGCCCAGGCTGCT
GACCAAGTGCAGATCTACCAGACCTTGTTCTCAAGAGGGACACCGCAGCTGCCACTGGAAGGCC
AGTGCTCTGCTCCAGCTCTCACTGTACTTCCCTCACACCGGGAATATGTTGCCAGTTATGAAAA
ACCTAATGCACTTTTGTTTCCCTTTTTTCTTCTTCATTTTAAAAGAAGGATATTATTTTTTGAT
TGCATTTAAAATCTAGACAGGGGGACATGCAAAAACAATCATCATCCACTTGGATGTCATTTTA
TAAATTAACACTGTGTGCTTTTGTATGGAAAAATATATAATTTAATAGTATAAGAAAAGATATA
TATTCACTGGCATTCATGCAGAACACAAACTTTGCTGTACACATTTTGTGTTTCTTAGTGGTTT
AAAATGGCATGCTTTGCATGCAAAGGAAAACCATTGCAATTAGTCTTTTATTATACCTGTATCT
TGGGTTTTATAAACTGCTGGCTTGAGTTTTGTTGCTCTTAAACCACAGTACATGTCTGGATATC
TTAGGTCCAACAGACTGAACTAGTTTTGTTGACAAGGGTTCCCAAGCAATGGATGTTTGTCTGT
CTGATTCTTCCACATTTACAGGAATCACATTTGGGCGCGTGTGCAAGCTATGCTGTAGCTAGTT
CAGGTACTGAATCTTTAGGACTTGCAGAAGTTCATTTTGGCAGGTACATGATACTCAAAGCATT
TATCATTCTCCTTGCTGTATACAGTTGATTATATTCTTTTGTGTGACACCAAGCTGTTAATTTA
AACATTCCTCCTACGCTAGTGTCTAGGAATTTTACCTGAACTCTCATACTCATTCTCTCTCATT
TCCTTTTTCCTCCCCCTGGTCCTCTCAGTTCCCTCCAACCTCCTGTAGAACTCATTATCCTTTA
GAGTAATACCACCCTTAACCAGCAGTTTAACTCCCCACTCCCTCAAAGGGGATTCATTTGTCTC
ACTAATGCTTATATGTATACACATATAACATTACTGTATTACTGTAACAAAGTATGTTTTTTAA
GTGTAAATTTTCATTGTGCAATCATATGTAAGCAATAAAACAAATAGAAAAATAACATCAC

hide sequence

RefSeq Acc Id:

XM_039079526 ⟹ XP_038935454

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	99,441,764 - 99,515,872 (+)	NCBI
mRatBN7.2	7	97,582,023 - 97,625,724 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001124036	(Get FASTA)	NCBI Sequence Viewer
	XP_038935454	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM16167	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000048877
	ENSRNOP00000048877.3
	ENSRNOP00000077887.1
	ENSRNOP00000090413.2
	ENSRNOP00000106693.1

RefSeq Acc Id:

NP_001124036 ⟸ NM_001130564

- UniProtKB:

D4ADS9 (UniProtKB/TrEMBL), A6HRQ5 (UniProtKB/TrEMBL), A0A8I5Y1P9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPTRVCCCCSALRPRYKRLVDNIFPEDPKDGLVKADMEKLTFYAVSAPEKLDRIGAYLAERLSR
DVVRHRSGYVLIAMEALDQLLMACHSQSIKPFVESFLHMVAKLLESGEPKLQVLGTNSFVKFAN
IEEDTPSYHRRYDFFVSRFSAMCHSCHSDPEIRTEIRIAGIRGIQGVVRKTVNDELRATIWEPQ
HMDKIVPSLLFNMQKIEEVDSRLGPPSSPSAADKEENPAVLAESCFRELLGRATFGNMNNAVRP
VFAHLDHHKLWDPNEFAVHCFKIIMYSIQAQYSHHVIQEILGHLDARKKDSPRVRAGIIQVLLE
AVAIAAKGSIGPTVLEVFNTLLKHLRLSVELEASDSQKGSVGSVSLSSKDNDEKIVQNAVIQTI
GFFGSNLPDYQRSEIMMFIMGKVPVFGTSTHTLDISQLGDLGTRRIQIMLLRSLLMVTSGYKAK
TIVTALPGSFLDPLLSPSLMEDYELRQLVLEVMHNLMDRHDNRAKLRGIRIIPDVADLKIKREK
ICRQDTSFMKKNGQQLYRHIYLGCKEEDNVQKNYELLYTSLALITIELANEEVVIDLIRLAIAL
QDSAIINEDNLPMFHRCGIMALVAAYLNFVSQMIAVPAFCQHVSKVIETRTMEAPYFLPEHIFR
DKCMLPKSLEKHDKNLYFLTNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQ
VDILSNSVPSDDVVSNTEEITFEALKKAIDTNGMEEQEKEKRRLVIEKFQKAPFEEIAAQCESK
ANLLHDRLAQILELTIRPPPSPSGTLTVTSGHAQYQSVPVYEMKFPDLCVY

hide sequence

Ensembl Acc Id:

ENSRNOP00000048877 ⟸ ENSRNOT00000045357

RefSeq Acc Id:	XP_038935454 ⟸ XM_039079526
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ADR8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000077887 ⟸ ENSRNOT00000107204

Ensembl Acc Id:

ENSRNOP00000090413 ⟸ ENSRNOT00000102392

Ensembl Acc Id:

ENSRNOP00000106693 ⟸ ENSRNOT00000165815

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ADS9-F1-model_v2	AlphaFold	D4ADS9	1-819	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695364

Promoter ID:

EPDNEW_R5888

Type:

initiation region

Name:

Efr3a_1

Description:

EFR3 homolog A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	106,535,451 - 106,535,511	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305976	AgrOrtholog
BioCyc Gene	G2FUF-33131	BioCyc
Ensembl Genes	ENSRNOG00000025528	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000045357	ENTREZGENE
	ENSRNOT00000045357.5	UniProtKB/TrEMBL
	ENSRNOT00000102392.2	UniProtKB/TrEMBL
	ENSRNOT00000107204.2	UniProtKB/TrEMBL
	ENSRNOT00000165815.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	EFR3-like_ARM	UniProtKB/TrEMBL
	EFR3_Homologs	UniProtKB/TrEMBL
KEGG Report	rno:362923	UniProtKB/TrEMBL
NCBI Gene	362923	ENTREZGENE
PANTHER	PROTEIN EFR3 HOMOLOG A	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	EFR3_ARM	UniProtKB/TrEMBL
PharmGKB	KIAA0143	RGD
PhenoGen	Efr3a	PhenoGen
RatGTEx	ENSRNOG00000025528	RatGTEx
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
UniProt	A0A8I5Y1P9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ADR8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LXL3_RAT	UniProtKB/TrEMBL
	A6HRQ5	ENTREZGENE, UniProtKB/TrEMBL
	D4ADS9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-09	Efr3a	EFR3 homolog A	Efr3a	EFR3 homolog A (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-11	Efr3a	EFR3 homolog A (S. cerevisiae)	RGD1305976_predicted	similar to RIKEN cDNA C920006C10 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1305976_predicted	similar to RIKEN cDNA C920006C10 (predicted)	LOC362923_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC362923_predicted	similar to RIKEN cDNA C920006C10 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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