Efr3a (EFR3 homolog A) - Rat Genome Database

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Gene: Efr3a (EFR3 homolog A) Rattus norvegicus
Analyze
Symbol: Efr3a
Name: EFR3 homolog A
RGD ID: 1305976
Description: Predicted to be involved in protein localization to plasma membrane. Predicted to be located in cytosol. Predicted to be active in plasma membrane. Orthologous to human EFR3A (EFR3 homolog A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aconitine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: EFR3 homolog A (S. cerevisiae); LOC362923; RGD1305976; similar to RIKEN cDNA C920006C10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8799,441,764 - 99,522,454 (+)NCBIGRCr8
mRatBN7.2797,552,677 - 97,633,369 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl797,552,677 - 97,633,369 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx799,306,220 - 99,386,911 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07101,507,880 - 101,588,569 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07101,427,222 - 101,507,909 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07106,535,428 - 106,616,805 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7106,535,434 - 106,616,805 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07106,483,576 - 106,564,947 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47103,147,405 - 103,228,104 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17103,181,640 - 103,262,319 (+)NCBI
Celera794,107,584 - 94,188,271 (+)NCBICelera
Cytogenetic Map7q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
glutamatergic synapse  (ISO)
plasma membrane  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:15363888   PMID:22871113   PMID:23229899   PMID:23376485  


Genomics

Comparative Map Data
Efr3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8799,441,764 - 99,522,454 (+)NCBIGRCr8
mRatBN7.2797,552,677 - 97,633,369 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl797,552,677 - 97,633,369 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx799,306,220 - 99,386,911 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07101,507,880 - 101,588,569 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07101,427,222 - 101,507,909 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07106,535,428 - 106,616,805 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7106,535,434 - 106,616,805 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07106,483,576 - 106,564,947 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47103,147,405 - 103,228,104 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17103,181,640 - 103,262,319 (+)NCBI
Celera794,107,584 - 94,188,271 (+)NCBICelera
Cytogenetic Map7q33NCBI
EFR3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388131,904,093 - 132,013,642 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8131,904,093 - 132,013,642 (+)EnsemblGRCh38hg38GRCh38
GRCh378132,916,340 - 133,025,889 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368132,985,541 - 133,094,956 (+)NCBINCBI36Build 36hg18NCBI36
Celera8129,092,075 - 129,201,496 (+)NCBICelera
Cytogenetic Map8q24.22NCBI
HuRef8128,233,937 - 128,343,448 (+)NCBIHuRef
CHM1_18132,956,757 - 133,066,224 (+)NCBICHM1_1
T2T-CHM13v2.08133,027,004 - 133,136,550 (+)NCBIT2T-CHM13v2.0
Efr3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391565,658,852 - 65,745,661 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1565,658,883 - 65,745,665 (+)EnsemblGRCm39 Ensembl
GRCm381565,787,020 - 65,873,812 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1565,787,034 - 65,873,816 (+)EnsemblGRCm38mm10GRCm38
MGSCv371565,618,603 - 65,705,374 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361565,616,714 - 65,703,485 (+)NCBIMGSCv36mm8
Celera1567,294,721 - 67,381,478 (+)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1529.12NCBI
Efr3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554616,588,026 - 6,687,499 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554616,588,178 - 6,687,499 (+)NCBIChiLan1.0ChiLan1.0
EFR3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27149,287,874 - 149,397,101 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18124,802,328 - 124,911,673 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08128,553,529 - 128,662,782 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18131,530,743 - 131,639,642 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8131,530,751 - 131,639,637 (+)Ensemblpanpan1.1panPan2
EFR3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11328,571,080 - 28,676,379 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1328,570,957 - 28,674,138 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1328,543,776 - 28,649,207 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01328,925,212 - 29,030,960 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1328,923,991 - 29,030,950 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11328,652,608 - 28,758,118 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01328,752,177 - 28,857,760 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01329,064,268 - 29,169,740 (+)NCBIUU_Cfam_GSD_1.0
Efr3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053039,679,583 - 9,770,042 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647017,105,682 - 17,196,448 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647017,105,682 - 17,196,399 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFR3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl49,053,086 - 9,137,265 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.149,053,439 - 9,137,289 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
EFR3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18126,355,535 - 126,458,427 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8126,355,476 - 126,458,501 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603913,650,007 - 13,752,924 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Efr3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473523,873,431 - 23,964,093 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473523,875,299 - 23,964,030 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Efr3a
159 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:734
Count of miRNA genes:291
Interacting mature miRNAs:377
Transcripts:ENSRNOT00000045357
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
10450828Scl79Serum cholesterol level QTL 793.50.001blood HDL cholesterol amount (VT:0000184)blood low density lipoprotein cholesterol level (CMO:0000053)789867376101773158Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)793595647106839474Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat

Markers in Region
BF403636  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2797,626,396 - 97,626,563 (+)MAPPERmRatBN7.2
Rnor_6.07106,609,833 - 106,609,999NCBIRnor6.0
Rnor_5.07106,557,975 - 106,558,141UniSTSRnor5.0
RGSC_v3.47103,221,132 - 103,221,298UniSTSRGSC3.4
Celera794,181,299 - 94,181,465UniSTS
RH 3.4 Map7671.0UniSTS
Cytogenetic Map7q33UniSTS
BI301673  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2797,584,622 - 97,584,815 (+)MAPPERmRatBN7.2
Rnor_6.07106,567,523 - 106,567,715NCBIRnor6.0
Rnor_5.07106,515,665 - 106,515,857UniSTSRnor5.0
RGSC_v3.47103,179,351 - 103,179,543UniSTSRGSC3.4
Celera794,139,529 - 94,139,721UniSTS
RH 3.4 Map7671.4UniSTS
Cytogenetic Map7q33UniSTS
RH140640  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.07106,563,769 - 106,563,966NCBIRnor5.0
RGSC_v3.47103,226,927 - 103,227,123UniSTSRGSC3.4
Celera1762,635,409 - 62,635,605UniSTS
Celera794,187,094 - 94,187,290UniSTS
Cytogenetic Map7q33UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 54 38 19 38 8 8 74 35 41 11 8
Low 3 3 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000045357   ⟹   ENSRNOP00000048877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl797,552,677 - 97,633,369 (+)Ensembl
Rnor_6.0 Ensembl7106,535,434 - 106,616,805 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102392   ⟹   ENSRNOP00000090413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl797,552,702 - 97,631,046 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107204   ⟹   ENSRNOP00000077887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl797,581,232 - 97,633,369 (+)Ensembl
RefSeq Acc Id: NM_001130564   ⟹   NP_001124036
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8799,441,767 - 99,522,454 (+)NCBI
mRatBN7.2797,552,677 - 97,633,369 (+)NCBI
Rnor_6.07106,535,434 - 106,616,805 (+)NCBI
Rnor_5.07106,483,576 - 106,564,947 (+)NCBI
RGSC_v3.47103,147,405 - 103,228,104 (+)RGD
Celera794,107,584 - 94,188,271 (+)RGD
Sequence:
RefSeq Acc Id: XM_039079526   ⟹   XP_038935454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8799,441,764 - 99,515,872 (+)NCBI
mRatBN7.2797,582,023 - 97,625,724 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001124036 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935454 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM16167 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000048877
  ENSRNOP00000048877.3
  ENSRNOP00000077887.1
  ENSRNOP00000090413.1
Reference Protein Sequences
RefSeq Acc Id: NP_001124036   ⟸   NM_001130564
- UniProtKB: D4ADS9 (UniProtKB/TrEMBL),   A6HRQ5 (UniProtKB/TrEMBL),   A0A8I5Y1P9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000048877   ⟸   ENSRNOT00000045357
RefSeq Acc Id: XP_038935454   ⟸   XM_039079526
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000077887   ⟸   ENSRNOT00000107204
RefSeq Acc Id: ENSRNOP00000090413   ⟸   ENSRNOT00000102392

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ADS9-F1-model_v2 AlphaFold D4ADS9 1-819 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695364
Promoter ID:EPDNEW_R5888
Type:initiation region
Name:Efr3a_1
Description:EFR3 homolog A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07106,535,451 - 106,535,511EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305976 AgrOrtholog
BioCyc Gene G2FUF-33131 BioCyc
Ensembl Genes ENSRNOG00000025528 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045357 ENTREZGENE
  ENSRNOT00000045357.4 UniProtKB/TrEMBL
  ENSRNOT00000102392.1 UniProtKB/TrEMBL
  ENSRNOT00000107204.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  EFR3-like_ARM UniProtKB/TrEMBL
KEGG Report rno:362923 UniProtKB/TrEMBL
NCBI Gene 362923 ENTREZGENE
PANTHER PROTEIN EFR3 HOMOLOG A UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam EFR3_ARM UniProtKB/TrEMBL
PharmGKB KIAA0143 RGD
PhenoGen Efr3a PhenoGen
RatGTEx ENSRNOG00000025528 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I5Y1P9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ADR8_RAT UniProtKB/TrEMBL
  A6HRQ5 ENTREZGENE, UniProtKB/TrEMBL
  D4ADS9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-09 Efr3a  EFR3 homolog A  Efr3a  EFR3 homolog A (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-11 Efr3a  EFR3 homolog A (S. cerevisiae)  RGD1305976_predicted  similar to RIKEN cDNA C920006C10 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1305976_predicted  similar to RIKEN cDNA C920006C10 (predicted)  LOC362923_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362923_predicted  similar to RIKEN cDNA C920006C10 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL