Cdc42ep3 (CDC42 effector protein 3) - Rat Genome Database

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Gene: Cdc42ep3 (CDC42 effector protein 3) Rattus norvegicus
Analyze
Symbol: Cdc42ep3
Name: CDC42 effector protein 3
RGD ID: 1305858
Description: Predicted to enable small GTPase binding activity. Predicted to be involved in Rho protein signal transduction; positive regulation of cellular component biogenesis; and regulation of cell shape. Predicted to be located in actin cytoskeleton and endomembrane system. Predicted to be active in cytoplasm; cytoskeleton; and plasma membrane. Orthologous to human CDC42EP3 (CDC42 effector protein 3); INTERACTS WITH 1,3-dinitrobenzene; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CDC42 effector protein (Rho GTPase binding) 3; LOC313838
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8621,463,081 - 21,483,553 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl621,461,762 - 21,508,540 (+)EnsemblGRCr8
mRatBN7.2615,710,894 - 15,731,366 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl615,708,730 - 15,732,721 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx616,009,294 - 16,029,787 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0616,331,501 - 16,352,000 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0615,827,760 - 15,848,253 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.061,922,500 - 1,942,972 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl61,922,500 - 1,942,972 (-)Ensemblrn6Rnor6.0
Rnor_5.061,912,346 - 1,932,818 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.462,111,458 - 2,132,242 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera615,376,813 - 15,397,267 (+)NCBICelera
RGSC_v3.162,111,145 - 2,132,242 (-)NCBI
Cytogenetic Map6q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP,ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
cantharidin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
corosolic acid  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
DDE  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
difenoconazole  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethyl methanesulfonate  (ISO)
fluoranthene  (ISO)
flusilazole  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glyphosate  (ISO)
isoprenaline  (ISO)
ketamine  (EXP)
ketoconazole  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (EXP,ISO)
melphalan  (ISO)
methamphetamine  (EXP)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
okadaic acid  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propiconazole  (EXP)
rac-lactic acid  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (ISO)
triadimefon  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP,ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Cdc42ep3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8621,463,081 - 21,483,553 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl621,461,762 - 21,508,540 (+)EnsemblGRCr8
mRatBN7.2615,710,894 - 15,731,366 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl615,708,730 - 15,732,721 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx616,009,294 - 16,029,787 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0616,331,501 - 16,352,000 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0615,827,760 - 15,848,253 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.061,922,500 - 1,942,972 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl61,922,500 - 1,942,972 (-)Ensemblrn6Rnor6.0
Rnor_5.061,912,346 - 1,932,818 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.462,111,458 - 2,132,242 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera615,376,813 - 15,397,267 (+)NCBICelera
RGSC_v3.162,111,145 - 2,132,242 (-)NCBI
Cytogenetic Map6q12NCBI
CDC42EP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38237,641,944 - 37,672,949 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl237,641,882 - 37,738,468 (-)Ensemblhg38GRCh38
GRCh37237,869,087 - 37,900,092 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36237,724,247 - 37,752,830 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34237,782,393 - 37,810,977NCBI
Celera237,711,639 - 37,740,219 (-)NCBICelera
Cytogenetic Map2p22.2NCBI
HuRef237,608,843 - 37,639,483 (-)NCBIHuRef
CHM1_1237,798,478 - 37,829,103 (-)NCBICHM1_1
T2T-CHM13v2.0237,648,900 - 37,679,907 (-)NCBIT2T-CHM13v2.0
Cdc42ep3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391779,641,152 - 79,662,520 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1779,641,156 - 79,662,520 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381779,333,723 - 79,355,091 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1779,333,727 - 79,355,091 (-)Ensemblmm10GRCm38
MGSCv371779,733,365 - 79,754,431 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361779,239,083 - 79,260,138 (-)NCBIMGSCv36mm8
Celera1783,643,319 - 83,664,470 (-)NCBICelera
Cytogenetic Map17E3NCBI
cM Map1750.3NCBI
Cdc42ep3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554415,437,626 - 5,461,085 (-)Ensembl
ChiLan1.0NW_0049554415,437,626 - 5,461,085 (-)NCBIChiLan1.0ChiLan1.0
CDC42EP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21288,810,902 - 88,841,486 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A88,809,369 - 88,845,460 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A37,665,482 - 37,696,817 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A38,429,213 - 38,460,283 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A38,433,075 - 38,433,839 (-)EnsemblpanPan2panpan1.1
CDC42EP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11729,949,452 - 29,973,008 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1729,950,210 - 29,973,008 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1729,763,162 - 29,786,805 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01730,599,265 - 30,622,939 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1730,599,304 - 30,603,875 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11729,825,858 - 29,849,497 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01729,892,669 - 29,916,277 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01730,107,873 - 30,131,523 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cdc42ep3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629242,012,013 - 42,035,924 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936663678,469 - 701,416 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936663676,869 - 701,416 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC42EP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3102,538,586 - 102,567,796 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13102,537,662 - 102,567,669 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23108,935,436 - 108,959,926 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDC42EP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11469,709,470 - 69,738,305 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1469,736,558 - 69,737,322 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604542,215,427 - 42,246,548 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc42ep3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473819,269,266 - 19,291,334 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473819,268,332 - 19,291,355 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cdc42ep3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1713,891,963 - 13,893,649 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cdc42ep3
145 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:94
Count of miRNA genes:70
Interacting mature miRNAs:85
Transcripts:ENSRNOT00000048711
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
8693699Alc37Alcohol consumption QTL 372.60.224drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61371716927053860Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6125740059Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
8693690Alc35Alcohol consumption QTL 352.20.606drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61371716927053860Rat

Markers in Region
RH133304  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2615,709,168 - 15,709,349 (-)MAPPERmRatBN7.2
Rnor_6.061,944,517 - 1,944,697NCBIRnor6.0
Rnor_5.061,934,363 - 1,934,543UniSTSRnor5.0
RGSC_v3.462,133,787 - 2,133,967UniSTSRGSC3.4
Celera615,375,088 - 15,375,268UniSTS
RH 3.4 Map639.9UniSTS
Cytogenetic Map6q11UniSTS
RH139335  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2615,721,882 - 15,722,094 (-)MAPPERmRatBN7.2
Rnor_6.061,931,770 - 1,931,981NCBIRnor6.0
Rnor_5.061,921,616 - 1,921,827UniSTSRnor5.0
RGSC_v3.462,120,729 - 2,120,940UniSTSRGSC3.4
Celera615,387,796 - 15,388,007UniSTS
Cytogenetic Map6q11UniSTS
RH141080  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2615,730,999 - 15,731,218 (-)MAPPERmRatBN7.2
Rnor_6.061,922,648 - 1,922,866NCBIRnor6.0
Rnor_5.061,912,494 - 1,912,712UniSTSRnor5.0
RGSC_v3.462,111,606 - 2,111,824UniSTSRGSC3.4
Celera615,396,901 - 15,397,119UniSTS
Cytogenetic Map6q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000048711   ⟹   ENSRNOP00000044798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl621,461,762 - 21,489,284 (+)Ensembl
mRatBN7.2 Ensembl615,708,730 - 15,732,721 (+)Ensembl
Rnor_6.0 Ensembl61,922,500 - 1,942,972 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157366   ⟹   ENSRNOP00000111590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl621,462,111 - 21,508,540 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000171383   ⟹   ENSRNOP00000106235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl621,463,929 - 21,484,089 (+)Ensembl
RefSeq Acc Id: NM_001048044   ⟹   NP_001041509
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8621,463,081 - 21,483,553 (+)NCBI
mRatBN7.2615,710,894 - 15,731,366 (+)NCBI
Rnor_6.061,922,500 - 1,942,972 (-)NCBI
Rnor_5.061,912,346 - 1,932,818 (-)NCBI
RGSC_v3.462,111,458 - 2,132,242 (-)RGD
Celera615,376,813 - 15,397,267 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001041509 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI05616 (Get FASTA)   NCBI Sequence Viewer  
  EDM02793 (Get FASTA)   NCBI Sequence Viewer  
  EDM02794 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000044798
  ENSRNOP00000044798.3
  ENSRNOP00000106235.1
  ENSRNOP00000111590.1
RefSeq Acc Id: NP_001041509   ⟸   NM_001048044
- UniProtKB: Q0VGK8 (UniProtKB/TrEMBL),   A6H9T8 (UniProtKB/TrEMBL),   A6H9T9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000044798   ⟸   ENSRNOT00000048711
Ensembl Acc Id: ENSRNOP00000111590   ⟸   ENSRNOT00000157366
Ensembl Acc Id: ENSRNOP00000106235   ⟸   ENSRNOT00000171383
Protein Domains
CRIB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q0VGK8-F1-model_v2 AlphaFold Q0VGK8 1-254 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694360
Promoter ID:EPDNEW_R4885
Type:multiple initiation site
Name:Cdc42ep3_1
Description:CDC42 effector protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.061,942,989 - 1,943,049EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305858 AgrOrtholog
BioCyc Gene G2FUF-38506 BioCyc
Ensembl Genes ENSRNOG00000032136 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000048711 ENTREZGENE
  ENSRNOT00000048711.6 UniProtKB/TrEMBL
  ENSRNOT00000157366.1 UniProtKB/TrEMBL
  ENSRNOT00000171383.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7453181 IMAGE-MGC_LOAD
InterPro Cdc42_effect UniProtKB/TrEMBL
  Cdc42_Effector_BORG/CEP UniProtKB/TrEMBL
  PAK_box_Rho_bd UniProtKB/TrEMBL
KEGG Report rno:313838 UniProtKB/TrEMBL
MGC_CLONE MGC:125211 IMAGE-MGC_LOAD
NCBI Gene 313838 ENTREZGENE
PANTHER CDC42 EFFECTOR PROTEIN 3 UniProtKB/TrEMBL
  CDC42 EFFECTOR PROTEIN BORG UniProtKB/TrEMBL
Pfam BORG_CEP UniProtKB/TrEMBL
  PBD UniProtKB/TrEMBL
PhenoGen Cdc42ep3 PhenoGen
PROSITE CRIB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032136 RatGTEx
SMART PBD UniProtKB/TrEMBL
UniProt A6H9T8 ENTREZGENE, UniProtKB/TrEMBL
  A6H9T9 ENTREZGENE, UniProtKB/TrEMBL
  Q0VGK8 ENTREZGENE
UniProt Secondary Q0VGK8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-13 Cdc42ep3  CDC42 effector protein 3  Cdc42ep3  CDC42 effector protein (Rho GTPase binding) 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Cdc42ep3  CDC42 effector protein (Rho GTPase binding) 3   Cdc42ep3_predicted  CDC42 effector protein (Rho GTPase binding) 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cdc42ep3_predicted  CDC42 effector protein (Rho GTPase binding) 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED