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Gene: Caln1 (calneuron 1) Rattus norvegicus

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Symbol:

Caln1

Name:

calneuron 1

RGD ID:

1305843

Description:

Predicted to enable calcium ion binding activity. Predicted to be located in Golgi apparatus; perinuclear region of cytoplasm; and plasma membrane. Predicted to be active in trans-Golgi network membrane. Orthologous to human CALN1 (calneuron 1); INTERACTS WITH 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

caBP8; calcium-binding protein 8; calneuron I; calneuron-1; calneuron-I; LOC363909

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CALN1 (calneuron 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Caln1 (calneuron 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Caln1 (calneuron 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CALN1 (calneuron 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CALN1 (calneuron 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Caln1 (calneuron 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CALN1 (calneuron 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Caln1 (calneuron 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Caln1 (calneuron 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CABP7 (calcium binding protein 7)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	CALN1 (calneuron 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Caln1 (calneuron 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	caln2 (calneuron 2)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	caln2 (calneuron 2)	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	caln1 (calneuron 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	caln1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	31,447,964 - 31,939,847 (-)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	12	25,811,743 - 26,303,670 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	25,819,628 - 26,303,344 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	26,965,639 - 27,399,677 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	27,576,121 - 28,010,201 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	26,636,702 - 27,071,428 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	29,307,117 - 29,796,996 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	29,308,341 - 29,743,705 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	31,251,402 - 31,733,594 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	26,860,409 - 27,287,503 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	27,542,062 - 27,969,078 (-)	NCBI		Celera
RGSC_v3.1	12	26,723,371 - 27,193,845 (-)	NCBI
Cytogenetic Map	12	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3-chloropropane-1,2-diol (EXP)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

choline (ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dorsomorphin (ISO)

doxorubicin (EXP,ISO)

entinostat (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

fonofos (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

furan (EXP)

glyphosate (EXP)

L-methionine (ISO)

lead(0) (ISO)

maneb (ISO)

methapyrilene (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

O-methyleugenol (ISO)

organophosphorus compound (EXP)

p-chloromercuribenzoic acid (ISO)

paracetamol (ISO)

paraquat (ISO)

parathion (ISO)

permethrin (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

progesterone (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

terbufos (ISO)

testosterone (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

gene expression (ISO)

Golgi organization (ISO)

long-term synaptic potentiation (ISO)

protein sialylation (ISO)

Cellular Component

Golgi apparatus (IEA)

perinuclear region of cytoplasm (IEA)

plasma membrane (IEA)

trans-Golgi network membrane (IBA,IEA,ISO)

Molecular Function

calcium ion binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:17055077	PMID:19338761	PMID:19458041	PMID:19682431	PMID:22688515	PMID:26116628

Genomics

Comparative Map Data

Caln1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	31,447,964 - 31,939,847 (-)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	12	25,811,743 - 26,303,670 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	25,819,628 - 26,303,344 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	26,965,639 - 27,399,677 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	27,576,121 - 28,010,201 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	26,636,702 - 27,071,428 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	29,307,117 - 29,796,996 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	29,308,341 - 29,743,705 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	31,251,402 - 31,733,594 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	26,860,409 - 27,287,503 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	27,542,062 - 27,969,078 (-)	NCBI		Celera
RGSC_v3.1	12	26,723,371 - 27,193,845 (-)	NCBI
Cytogenetic Map	12	q12	NCBI

CALN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	71,779,491 - 72,504,279 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	71,779,491 - 72,447,151 (-)	Ensembl			hg38	GRCh38
GRCh37	7	71,244,476 - 71,912,128 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	70,882,412 - 71,515,296 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	7	70,692,565 - 71,356,697	NCBI
Celera	7	64,619,023 - 65,251,883 (-)	NCBI		Celera
Cytogenetic Map	7	q11.22	NCBI
HuRef	7	67,413,680 - 68,045,799 (-)	NCBI		HuRef
CHM1_1	7	71,338,794 - 71,972,776 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	72,996,291 - 73,722,754 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	70,577,428 - 71,210,210 (-)	NCBI

Caln1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	130,398,245 - 130,876,253 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	130,398,296 - 130,876,253 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	130,369,404 - 130,846,325 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	130,369,455 - 130,847,412 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	130,845,328 - 131,316,515 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	130,733,504 - 131,124,904 (+)	NCBI		MGSCv36	mm8
Celera	5	127,382,573 - 127,853,118 (+)	NCBI		Celera
Cytogenetic Map	5	G1.3- G2	NCBI
cM Map	5	69.29	NCBI

Caln1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955456	9,079,917 - 9,543,754 (+)	Ensembl
ChiLan1.0	NW_004955456	9,079,917 - 9,547,459 (+)	NCBI	ChiLan1.0	ChiLan1.0

CALN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	92,121,039 - 92,783,896 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	140,385,673 - 141,048,531 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	7	79,659,066 - 80,324,368 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	79,667,347 - 80,280,077 (-)	Ensembl			panPan2	panpan1.1

CALN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	1,545,151 - 2,067,927 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	1,556,003 - 2,067,352 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	3,244,577 - 3,773,112 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	1,356,619 - 1,878,362 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	1,367,490 - 1,878,353 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	1,285,832 - 1,814,587 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	1,293,382 - 1,820,418 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	1,465,357 - 1,994,422 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Caln1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	126,873,811 - 127,223,088 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936543	6,820,362 - 7,135,207 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936543	6,813,479 - 7,054,644 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CALN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	2,846,868 - 3,578,564 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666070	13,019,544 - 13,761,534 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Caln1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	9,088,443 - 9,581,642 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624740	9,049,512 - 9,589,028 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Caln1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	23,133,275 - 23,595,767 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Caln1
4363 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	89
Count of miRNA genes:	76
Interacting mature miRNAs:	81
Transcripts:	ENSRNOT00000001185
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24805022	52308831	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	50386405	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	25989355	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	1	33700600	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	29775522	42298555	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	49212240	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	1	33700556	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	18749469	36488809	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	18749469	34312613	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	29636637	37764351	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	7901625	33938215	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	33700556	Rat

Markers in Region

D12Got67

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	26,062,355 - 26,062,598 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	29,551,323 - 29,551,563	NCBI	Rnor6.0
Rnor_5.0	12	31,492,686 - 31,492,926	UniSTS	Rnor5.0
RGSC_v3.4	12	27,096,977 - 27,097,218	RGD	RGSC3.4
RGSC_v3.4	12	27,096,978 - 27,097,218	UniSTS	RGSC3.4
Celera	12	27,779,143 - 27,779,370	UniSTS
RGSC_v3.1	12	26,960,194 - 26,960,434	RGD
RH 3.4 Map	12	447.2	UniSTS
RH 3.4 Map	12	447.2	RGD
RH 2.0 Map	12	315.7	RGD
Cytogenetic Map	12	q13	UniSTS

D12Got104

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	25,862,107 - 25,862,303 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	29,350,530 - 29,350,725	NCBI	Rnor6.0
Rnor_5.0	12	31,294,754 - 31,294,949	UniSTS	Rnor5.0
RGSC_v3.4	12	26,902,909 - 26,903,105	RGD	RGSC3.4
RGSC_v3.4	12	26,902,910 - 26,903,105	UniSTS	RGSC3.4
Celera	12	27,583,362 - 27,583,557	UniSTS
RGSC_v3.1	12	26,766,126 - 26,766,321	RGD
RH 3.4 Map	12	408.8	UniSTS
RH 3.4 Map	12	408.8	RGD
RH 2.0 Map	12	320.0	RGD
Cytogenetic Map	12	q13	UniSTS

D12Got59

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	26,142,576 - 26,142,765 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	29,631,815 - 29,632,001	NCBI	Rnor6.0
Rnor_5.0	12	31,570,525 - 31,570,711	UniSTS	Rnor5.0
RGSC_v3.4	12	27,176,103 - 27,176,290	RGD	RGSC3.4
RGSC_v3.4	12	27,176,104 - 27,176,290	UniSTS	RGSC3.4
Celera	12	27,858,597 - 27,858,783	UniSTS
RGSC_v3.1	12	27,039,320 - 27,039,506	RGD
RH 3.4 Map	12	436.6	RGD
RH 3.4 Map	12	436.6	UniSTS
Cytogenetic Map	12	q13	UniSTS

C85851

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	25,819,345 - 25,819,451 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	29,307,911 - 29,308,016	NCBI	Rnor6.0
Rnor_5.0	12	31,252,261 - 31,252,366	UniSTS	Rnor5.0
RGSC_v3.4	12	26,859,979 - 26,860,084	UniSTS	RGSC3.4
Celera	12	27,541,632 - 27,541,737	UniSTS
Cytogenetic Map	12	q13	UniSTS

BE119354

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	25,906,020 - 25,906,190 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	29,394,762 - 29,394,931	NCBI	Rnor6.0
Rnor_5.0	12	31,338,278 - 31,338,447	UniSTS	Rnor5.0
RGSC_v3.4	12	26,940,060 - 26,940,229	UniSTS	RGSC3.4
Celera	12	27,624,040 - 27,624,209	UniSTS
RH 3.4 Map	12	413.6	UniSTS
Cytogenetic Map	12	q13	UniSTS

BE097726

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	25,988,703 - 25,988,906 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	29,477,770 - 29,477,972	NCBI	Rnor6.0
Rnor_5.0	12	31,419,231 - 31,419,433	UniSTS	Rnor5.0
RGSC_v3.4	12	27,023,490 - 27,023,692	UniSTS	RGSC3.4
Celera	12	27,705,597 - 27,705,799	UniSTS
RH 3.4 Map	12	439.6	UniSTS
Cytogenetic Map	12	q13	UniSTS

AU049064

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	26,062,350 - 26,062,537 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	29,551,318 - 29,551,502	NCBI	Rnor6.0
Rnor_5.0	12	31,492,681 - 31,492,865	UniSTS	Rnor5.0
RGSC_v3.4	12	27,096,973 - 27,097,157	UniSTS	RGSC3.4
Celera	12	27,779,138 - 27,779,309	UniSTS
Cytogenetic Map	12	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
7	8	26	149	71	70	41	22	41	6	205	68	1	131	81	82	29	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001077201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC091379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ914829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ914830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001185 ⟹ ENSRNOP00000001185

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	25,819,628 - 26,303,344 (-)	Ensembl
Rnor_6.0 Ensembl	12	29,308,341 - 29,743,705 (-)	Ensembl

RefSeq Acc Id:

NM_001077201 ⟹ NP_001070669

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	31,447,964 - 31,939,498 (-)	NCBI
mRatBN7.2	12	25,811,743 - 26,303,321 (-)	NCBI
Rnor_6.0	12	29,308,341 - 29,743,705 (-)	NCBI
Rnor_5.0	12	31,251,402 - 31,733,594 (-)	NCBI
RGSC_v3.4	12	26,860,409 - 27,287,503 (-)	RGD
Celera	12	27,542,062 - 27,969,078 (-)	RGD

Sequence:

show sequence

ATGCGGCTGCCTGAGCAACCTGGAGATGGAAAGCCTGAGAATGAGACAAAGGGGGACCAAGAAA
CCCCCGAAAGGGGAGAGGAGCCACGGAGAAGCCCAGCCCCTGACTTCCCCACCTGGGAAAAGAT
GCCGTTCCACCATGTAACTGCTGGCTTGTTGTACAAGGGGAATTACCTCAACCGATCTCTGTCT
GCAGGCAGCGACAGTGAGCAGTTGGCTAATATCTCTGTGGAAGAACTCGATGAAATCCGAGAAG
CCTTCCGTGTTCTGGACAGAGATGGGAACGGCTTCATCTCTAAGCAGGAGCTGGGCATGGCGAT
GCGTTCTTTGGGGTACATGCCAAGCGAAGTGGAACTGGCTATCATCATGCAGCGCCTGGACATG
GACGGAGATGGGCAGGTAGATTTTGATGAATTCATGACGATTCTTGGACCCAAGCTGGTATCAT
CCGAAGGTCGAGATGGTTTTCTTGGAAATACGATAGACAGTATCTTCTGGCAGTTCGACATGCA
GAGAGTCACTCTGGAAGAGCTGAAGCATATCCTGTACCATGCCTTCCGGGATCACTTAACAATG
AAGGACATTGAGAACATTATTATCAACGAGGAGGAGAGTTTGAACGAGACCTCGGGGAACTGCC
AGACAGAGTTTGAAGGAGTCCATTCGCAGAAACAGAACCGGCAGACCTGCGTCCGCAAGAGCCT
CATATGCGCCTTTGCCATGGCCTTTATCATAAGCGTCATGCTGATCGCAGCCAACCAGATCCTG
CGGAGCGGCATGGAGTAG

hide sequence

RefSeq Acc Id:

XM_006249243 ⟹ XP_006249305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	31,447,966 - 31,855,335 (-)	NCBI
mRatBN7.2	12	25,811,743 - 26,219,141 (-)	NCBI
Rnor_6.0	12	29,307,117 - 29,708,656 (-)	NCBI
Rnor_5.0	12	31,251,402 - 31,733,594 (-)	NCBI

Sequence:

show sequence

GTCCCCAATCCTGGGAGAAAAGCGAAGAGATAGACTGGGGTGGCCAAGCCAGCCCAGCAACCCA
GCTCCAGGCTCGGTGGGGAGGGAAGAAGGCAAGAGTGGTAGGGGGATCTCTTTGCTAGAGACCG
CTAGGCTTCTTCTTCCTCTGGAGGAACCGGGGAGGCACTGGGGAGGAGGCCGGAGCTGCATGGA
GTTTCTGGGGCGCGCAACTCCGGCGGGGCCTCGGCCACTGGGCTCCCAGGCGCTGCGAGGAGGC
AGCCGCGCACATGGGCTAAGCCCGCGCGGCCAGCGGGCGCGGGAGGGGTAGAGGCGAGAGCGGT
GCAGGGGGTGCGGGGCGCACGTTCCCCCAGACGGGAGGCGAGGACAAGGACAGGGGAGAAAGGA
GCAGCCTAGATCACCGCGGGCTCTGCAAAGACCAGCTGAGATACTCAAGGGAAAGGAGAGACTC
GCGCCGGGCTCTCGGGTGCCGCTGGGTTGGGCAAAGCGGCCTCCCAACCGGAGTGGGGGGAACG
CCGTGGGAGCCGGCTACGGAGAGGAAGGATGCCCGCGCGGGGACGCGTGTGAGCGCCAGGCTGA
GCGCTCGGGTTCGCGTCGCCCCCTCCCTGCGGGCCTCGGAGGAGGTGCCTGGGCAGCCGGGCAG
CGGAGCTCCGGCTCCAGGAGAGGGAAAAGATGCCGTTCCACCATGTAACTGCTGGCTTGTTGTA
CAAGGGGAATTACCTCAACCGATCTCTGTCTGCAGGCAGCGACAGTGAGCAGTTGGCTAATATC
TCTGTGGAAGAACTCGATGAAATCCGAGAAGCCTTCCGTGTTCTGGACAGAGATGGGAACGGCT
TCATCTCTAAGCAGGAGCTGGGCATGGCGATGCGTTCTTTGGGGTACATGCCAAGCGAAGTGGA
ACTGGCTATCATCATGCAGCGCCTGGACATGGACGGAGATGGGCAGGTAGATTTTGATGAATTC
ATGACGATTCTTGGACCCAAGCTGGTATCATCCGAAGGTCGAGATGGTTTTCTTGGAAATACGA
TAGACAGTATCTTCTGGCAGTTCGACATGCAGAGAGTCACTCTGGAAGAGCTGAAGCATATCCT
GTACCATGCCTTCCGGGATCACTTAACAATGAAGGACATTGAGAACATTATTATCAACGAGGAG
GAGAGTTTGAACGAGACCTCGGGGAACTGCCAGACAGAGTTTGAAGGAGTCCATTCGCAGAAAC
AGAACCGGCAGACCTGCGTCCGCAAGAGCCTCATATGCGCCTTTGCCATGGCCTTTATCATAAG
CGTCATGCTGATCGCAGCCAACCAGATCCTGCGGAGCGGCATGGAGTAGCAGTCTCCCACCAGC
CACACCGCGTTGCCAGCTCACCGCGCATGTGCATGCCCCGCGGGCAGACTCTGTTCCTTCACAC
AGGAGATCTGGACCTTTGGATGGATGCAAGCGTTGGTACCGTTCAATAAAAACTCGAGTTTGCA
GTGCAACCGGGCTCACGGATCAACTCCATCTCCTTGGCAGGGACACAAAAGGGCTGTCTTCAAT
GCTTTCATGGTTTTGTTTCCCAATGCAATAAATAGCCAGGAGCTCTCAGTTATTGCTTCAACCG
CCAGTAACAACTCTGAAGCAAGGGGGAAAAAATACTGCTTTCTTTTCGTCTTGGAATTCCAGTA
GCCATCCAGATATCATGGTGGCATCTGAGGGCGAGAAAGAAAGACAGACGTGAGTAACAGTCAC
CTCCATCCATGACCCAATTCTTTCAACCCAGGGATGCATTGAGACTCCCTGCTGAAGTTGACTT
CTGGGTTGCTACAGAAAAGGGGACTTTCCATCTCACCCTGGCTTCCTGCCTCCACCCAGTGGAG
ACCCCTCCCACCAAGGCACGGAGGGGGAAAGCCATTAAGCAGGGCGCAACTCCTTTGCAGTCCC
CGCTGCTGTTCTTAATCGCCTTTTCTACAGGACTCTTGTCGGTAGAGCTGGGGCACTCTCGGTT
GGTTTCCACGGCTCTTGGCTTTCTGTTTCTGAAGTCCATCCCGCACCAGCATCTTGGAATCTGC
AGAGAGCCTGGCTCCCAGCTTTCTTGCCTGTGCCGCCATTAGAGAAAAAAAAGAAAAAGAAAAA
ATATTCCATAACCTGTGTGTCTCTATAACCCAGACACGTAGACAGACAGGGGACTTTTCTGTGT
AATGCTGTTTTTCCCAAATTGCTTACTTTGGACATGAACTTGTTCTCTATCTCACACCTGTCTG
TGCTTCTTTAGAGAAAAGGATGCAGTAACTAGGGTAGAGGAAGGAATGAGTCTGGCAGTGAGGA
GGCCTAGACCCCAGGCATCTGAAGTAACAGAGCCGCTCCGAGTCGCCATATTTGATAATATCTG
TAACTTTAGATTGGTGTACATCTAACCTTCCCCTCATCGTGGACTTTATTAGTGAGCCTTTCCC
CAGCTAAGGAAAGGACACCTAGAACTTGAAGCAAAAAGATGGAAGGATCAGATTGCTGTGTTTT
GCTTAATAACTCATGAAATTCAGGTTGTGCTGATGACTCATTAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017598405 ⟹ XP_017453894

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	31,447,966 - 31,939,847 (-)	NCBI
mRatBN7.2	12	25,811,743 - 26,303,670 (-)	NCBI
Rnor_6.0	12	29,307,117 - 29,796,996 (-)	NCBI

Sequence:

show sequence

TTGCAGTGTGAATTTTAATTAAATTAAAATAAAAGTTTGAGAAGAATTAAGTGAAATCCTAAAG
TTCTCGGCTCATTGGTCGGGGACTGCATAGAGTATCAGGCTCCAATTGATGGTGAGTACATTCA
ATTTATCCAGGACCAGACGCTATTAGAACCAGAGTCACAATGAGGCCCCAGCAGTTTGGAATAG
GACCTGGCCTTGAGCTCATGGCTGCCGCCCTCAGCCAGTTGCTTTTGTGGCTTCTTGGGAGTTA
ATGTGACACTGGAGATTGGCCAGGATCCCTGAGCTCCACCTCCATCTGCCCGGTAGGTCAGCTG
GGCTTGGCCTGGCTCCAGAAAGCAGGCGACATGCTTCCCTGACCCACAGTTGGACCGGGCATTG
TAGCCAGGGTCCGTCGCACTTTTCGGTGGTCTGCACGGACTGAGCCAACTCGGTGTGGACGATC
TCCTGGCTGTGGCTGTGTGGCTAGTCCACCTTTGCAGTTCCAGTAGTCAGACTGGAGTCTCTTT
GGAAGCAGCTCTAAGGAATACACCAGGATCTCAGAGTCTCAATGTCTTCGCTGACGCTCCTTTG
ATGTACCCCCAAATCTCTGACCACATCACCCTGGACCCCCGATGCGGCTGCCTGAGCAACCTGG
AGATGGAAAGCCTGAGAATGAGACAAAGGGGGACCAAGAAACCCCCGAAAGGGGAGAGGAGCCA
CGGAGAAGCCCAGCCCCTGACTTCCCCACCTGGCAAGTCTCCCCCCAACCCCAAATCCCTGGAT
CTAGATTGCTTTGCAACTCCCAGGGAAAAGATGCCGTTCCACCATGTAACTGCTGGCTTGTTGT
ACAAGGGGAATTACCTCAACCGATCTCTGTCTGCAGGCAGCGACAGTGAGCAGTTGGCTAATAT
CTCTGTGGAAGAACTCGATGAAATCCGAGAAGCCTTCCGTGTTCTGGACAGAGATGGGAACGGC
TTCATCTCTAAGCAGGAGCTGGGCATGGCGATGCGTTCTTTGGGGTACATGCCAAGCGAAGTGG
AACTGGCTATCATCATGCAGCGCCTGGACATGGACGGAGATGGGCAGGTAGATTTTGATGAATT
CATGACGATTCTTGGACCCAAGCTGGTATCATCCGAAGGTCGAGATGGTTTTCTTGGAAATACG
ATAGACAGTATCTTCTGGCAGTTCGACATGCAGAGAGTCACTCTGGAAGAGCTGAAGCATATCC
TGTACCATGCCTTCCGGGATCACTTAACAATGAAGGACATTGAGAACATTATTATCAACGAGGA
GGAGAGTTTGAACGAGACCTCGGGGAACTGCCAGACAGAGTTTGAAGGAGTCCATTCGCAGAAA
CAGAACCGGCAGACCTGCGTCCGCAAGAGCCTCATATGCGCCTTTGCCATGGCCTTTATCATAA
GCGTCATGCTGATCGCAGCCAACCAGATCCTGCGGAGCGGCATGGAGTAGCAGTCTCCCACCAG
CCACACCGCGTTGCCAGCTCACCGCGCATGTGCATGCCCCGCGGGCAGACTCTGTTCCTTCACA
CAGGAGATCTGGACCTTTGGATGGATGCAAGCGTTGGTACCGTTCAATAAAAACTCGAGTTTGC
AGTGCAACCGGGCTCACGGATCAACTCCATCTCCTTGGCAGGGACACAAAAGGGCTGTCTTCAA
TGCTTTCATGGTTTTGTTTCCCAATGCAATAAATAGCCAGGAGCTCTCAGTTATTGCTTCAACC
GCCAGTAACAACTCTGAAGCAAGGGGGAAAAAATACTGCTTTCTTTTCGTCTTGGAATTCCAGT
AGCCATCCAGATATCATGGTGGCATCTGAGGGCGAGAAAGAAAGACAGACGTGAGTAACAGTCA
CCTCCATCCATGACCCAATTCTTTCAACCCAGGGATGCATTGAGACTCCCTGCTGAAGTTGACT
TCTGGGTTGCTACAGAAAAGGGGACTTTCCATCTCACCCTGGCTTCCTGCCTCCACCCAGTGGA
GACCCCTCCCACCAAGGCACGGAGGGGGAAAGCCATTAAGCAGGGCGCAACTCCTTTGCAGTCC
CCGCTGCTGTTCTTAATCGCCTTTTCTACAGGACTCTTGTCGGTAGAGCTGGGGCACTCTCGGT
TGGTTTCCACGGCTCTTGGCTTTCTGTTTCTGAAGTCCATCCCGCACCAGCATCTTGGAATCTG
CAGAGAGCCTGGCTCCCAGCTTTCTTGCCTGTGCCGCCATTAGAGAAAAAAAAGAAAAAGAAAA
AATATTCCATAACCTGTGTGTCTCTATAACCCAGACACGTAGACAGACAGGGGACTTTTCTGTG
TAATGCTGTTTTTCCCAAATTGCTTACTTTGGACATGAACTTGTTCTCTATCTCACACCTGTCT
GTGCTTCTTTAGAGAAAAGGATGCAGTAACTAGGGTAGAGGAAGGAATGAGTCTGGCAGTGAGG
AGGCCTAGACCCCAGGCATCTGAAGTAACAGAGCCGCTCCGAGTCGCCATATTTGATAATATCT
GTAACTTTAGATTGGTGTACATCTAACCTTCCCCTCATCGTGGACTTTATTAGTGAGCCTTTCC
CCAGCTAAGGAAAGGACACCTAGAACTTGAAGCAAAAAGATGGAAGGATCAGATTGCTGTGTTT
TGCTTAATAACTCATGAAATTCAGGTTGTGCTGATGACTCATTAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017598406 ⟹ XP_017453895

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	31,447,966 - 31,939,847 (-)	NCBI
mRatBN7.2	12	25,811,743 - 26,303,670 (-)	NCBI
Rnor_6.0	12	29,307,117 - 29,796,996 (-)	NCBI

Sequence:

show sequence

TTGCAGTGTGAATTTTAATTAAATTAAAATAAAAGTTTGAGAAGAATTAAGTGAAATCCTAAAG
TTCTCGGCTCATTGGTCGGGGACTGCATAGAGTATCAGGCTCCAATTGATGGTGAGTACATTCA
ATTTATCCAGGACCAGACGCTATTAGAACCAGAGTCACAATGAGGCCCCAGCAGTTTGGAATAG
GACCTGGCCTTGAGCTCATGGCTGCCGCCCTCAGCCAGTTGCTTTTGTGGCTTCTTGGGAGTTA
ATGTGACACTGGAGATTGGCCAGGATCCCTGAGCTCCACCTCCATCTGCCCGGTAGGTCAGCTG
GGCTTGGCCTGGCTCCAGAAAGCAGGCGACATGCTTCCCTGACCCACAGTTGGACCGGGCATTG
TAGCCAGGGTCCGTCGCACTTTTCGGTGGTCTGCACGGACTGAGCCAACTCGGTGTGGACGATC
TCCTGGCTGTGGCTGTGTGGCTAGTCCACCTTTGCAGTTCCAGTAGTCAGACTGGAGTCTCTTT
GGAAGCAGCTCTAAGGAATACACCAGGATCTCAGAAATTTTAACCTGTCCCCCAGGGCAATACA
ATACAGAACCAGTATCGGACACAGGCTGAAAACTGGACATTGTAAACCTCCTTGCTCTAACCGA
GTCTCAATGTCTTCGCTGACGCTCCTTTGATGTACCCCCAAATCTCTGACCACATCACCCTGGA
CCCCCGATGCGGCTGCCTGAGCAACCTGGAGATGGAAAGCCTGAGAATGAGACAAAGGGGGACC
AAGAAACCCCCGAAAGGGGAGAGGAGCCACGGAGAAGCCCAGCCCCTGACTTCCCCACCTGGCA
AGTCTCCCCCCAACCCCAAATCCCTGGATCTAGATTGCTTTGCAACTCCCAGGGAAAAGATGCC
GTTCCACCATGTAACTGCTGGCTTGTTGTACAAGGGGAATTACCTCAACCGATCTCTGTCTGCA
GGCAGCGACAGTGAGCAGTTGGCTAATATCTCTGTGGAAGAACTCGATGAAATCCGAGAAGCCT
TCCGTGTTCTGGACAGAGATGGGAACGGCTTCATCTCTAAGCAGGAGCTGGGCATGGCGATGCG
TTCTTTGGGGTACATGCCAAGCGAAGTGGAACTGGCTATCATCATGCAGCGCCTGGACATGGAC
GGAGATGGGCAGGTAGATTTTGATGAATTCATGACGATTCTTGGACCCAAGCTGGTATCATCCG
AAGGTCGAGATGGTTTTCTTGGAAATACGATAGACAGTATCTTCTGGCAGTTCGACATGCAGAG
AGTCACTCTGGAAGAGCTGAAGCATATCCTGTACCATGCCTTCCGGGATCACTTAACAATGAAG
GACATTGAGAACATTATTATCAACGAGGAGGAGAGTTTGAACGAGACCTCGGGGAACTGCCAGA
CAGAGTTTGAAGGAGTCCATTCGCAGAAACAGAACCGGCAGACCTGCGTCCGCAAGAGCCTCAT
ATGCGCCTTTGCCATGGCCTTTATCATAAGCGTCATGCTGATCGCAGCCAACCAGATCCTGCGG
AGCGGCATGGAGTAGCAGTCTCCCACCAGCCACACCGCGTTGCCAGCTCACCGCGCATGTGCAT
GCCCCGCGGGCAGACTCTGTTCCTTCACACAGGAGATCTGGACCTTTGGATGGATGCAAGCGTT
GGTACCGTTCAATAAAAACTCGAGTTTGCAGTGCAACCGGGCTCACGGATCAACTCCATCTCCT
TGGCAGGGACACAAAAGGGCTGTCTTCAATGCTTTCATGGTTTTGTTTCCCAATGCAATAAATA
GCCAGGAGCTCTCAGTTATTGCTTCAACCGCCAGTAACAACTCTGAAGCAAGGGGGAAAAAATA
CTGCTTTCTTTTCGTCTTGGAATTCCAGTAGCCATCCAGATATCATGGTGGCATCTGAGGGCGA
GAAAGAAAGACAGACGTGAGTAACAGTCACCTCCATCCATGACCCAATTCTTTCAACCCAGGGA
TGCATTGAGACTCCCTGCTGAAGTTGACTTCTGGGTTGCTACAGAAAAGGGGACTTTCCATCTC
ACCCTGGCTTCCTGCCTCCACCCAGTGGAGACCCCTCCCACCAAGGCACGGAGGGGGAAAGCCA
TTAAGCAGGGCGCAACTCCTTTGCAGTCCCCGCTGCTGTTCTTAATCGCCTTTTCTACAGGACT
CTTGTCGGTAGAGCTGGGGCACTCTCGGTTGGTTTCCACGGCTCTTGGCTTTCTGTTTCTGAAG
TCCATCCCGCACCAGCATCTTGGAATCTGCAGAGAGCCTGGCTCCCAGCTTTCTTGCCTGTGCC
GCCATTAGAGAAAAAAAAGAAAAAGAAAAAATATTCCATAACCTGTGTGTCTCTATAACCCAGA
CACGTAGACAGACAGGGGACTTTTCTGTGTAATGCTGTTTTTCCCAAATTGCTTACTTTGGACA
TGAACTTGTTCTCTATCTCACACCTGTCTGTGCTTCTTTAGAGAAAAGGATGCAGTAACTAGGG
TAGAGGAAGGAATGAGTCTGGCAGTGAGGAGGCCTAGACCCCAGGCATCTGAAGTAACAGAGCC
GCTCCGAGTCGCCATATTTGATAATATCTGTAACTTTAGATTGGTGTACATCTAACCTTCCCCT
CATCGTGGACTTTATTAGTGAGCCTTTCCCCAGCTAAGGAAAGGACACCTAGAACTTGAAGCAA
AAAGATGGAAGGATCAGATTGCTGTGTTTTGCTTAATAACTCATGAAATTCAGGTTGTGCTGAT
GACTCATTAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017598407 ⟹ XP_017453896

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	31,447,966 - 31,924,645 (-)	NCBI
mRatBN7.2	12	25,811,743 - 26,288,085 (-)	NCBI
Rnor_6.0	12	29,307,117 - 29,781,487 (-)	NCBI

Sequence:

show sequence

GTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGCAGGCAAGCATGTGCAAGGGCAGGCTTGTGT
CTGAATGTGTACATTCTACAGTGGTCATGCTCAAGGAACCCTCTCTGAACAGAAACTCCCTCCC
ACTCTCCCTGACCAGCGTCCAGTCCAGGCTCCGGTGGGGACAGGGTGCCCTTGATGCTACCTGC
CTACCCCCTCCAGTGCAGCCCTTCTCCTTGGCCAAAGAGGACAACAGGCAGGACGTTGGTACTC
ACTGCTGTGGGCTGTGCTTGGTACCCGTGGTCCAGTTTCCCAACCTCAGATCCCAAGAGACCCT
GCACGAGCAGCCCCATTTCCTGTCCTCCTGGCTCCATCTCCTCATTGGAACTAGCAAGCTGCAG
GAAGCTTTCTCAGCAGCCGAGAGCAGCAGCCAGGAGCAGCCACAGCAGCAGCAGCCCGAGTAGC
AGCAGCCCGAGTAGCAGCAGCAGGCAGCAGCACCCTTCAAATTGGGTCTCTAGCCCTTTAAATC
TGCTCAGTTACCAAAAAAGAAGAGGCATCAGACCCTGTTAATTAAAGCTCGCCCTGGTCCATCA
GGCTGAGGAGCTGCAGTGCTCTGTTCCTTCAGATGGCTTAGCGACTCTCCCCCAACTCCACAGC
CATGGATCTTGGAGCACTTCTCCCGAGATCAGCAGGAGAGTCTCAATGTCTTCGCTGACGCTCC
TTTGATGTACCCCCAAATCTCTGACCACATCACCCTGGACCCCCGATGCGGCTGCCTGAGCAAC
CTGGAGATGGAAAGCCTGAGAATGAGACAAAGGGGGACCAAGAAACCCCCGAAAGGGGAGAGGA
GCCACGGAGAAGCCCAGCCCCTGACTTCCCCACCTGGCAAGTCTCCCCCCAACCCCAAATCCCT
GGATCTAGATTGCTTTGCAACTCCCAGGGAAAAGATGCCGTTCCACCATGTAACTGCTGGCTTG
TTGTACAAGGGGAATTACCTCAACCGATCTCTGTCTGCAGGCAGCGACAGTGAGCAGTTGGCTA
ATATCTCTGTGGAAGAACTCGATGAAATCCGAGAAGCCTTCCGTGTTCTGGACAGAGATGGGAA
CGGCTTCATCTCTAAGCAGGAGCTGGGCATGGCGATGCGTTCTTTGGGGTACATGCCAAGCGAA
GTGGAACTGGCTATCATCATGCAGCGCCTGGACATGGACGGAGATGGGCAGGTAGATTTTGATG
AATTCATGACGATTCTTGGACCCAAGCTGGTATCATCCGAAGGTCGAGATGGTTTTCTTGGAAA
TACGATAGACAGTATCTTCTGGCAGTTCGACATGCAGAGAGTCACTCTGGAAGAGCTGAAGCAT
ATCCTGTACCATGCCTTCCGGGATCACTTAACAATGAAGGACATTGAGAACATTATTATCAACG
AGGAGGAGAGTTTGAACGAGACCTCGGGGAACTGCCAGACAGAGTTTGAAGGAGTCCATTCGCA
GAAACAGAACCGGCAGACCTGCGTCCGCAAGAGCCTCATATGCGCCTTTGCCATGGCCTTTATC
ATAAGCGTCATGCTGATCGCAGCCAACCAGATCCTGCGGAGCGGCATGGAGTAGCAGTCTCCCA
CCAGCCACACCGCGTTGCCAGCTCACCGCGCATGTGCATGCCCCGCGGGCAGACTCTGTTCCTT
CACACAGGAGATCTGGACCTTTGGATGGATGCAAGCGTTGGTACCGTTCAATAAAAACTCGAGT
TTGCAGTGCAACCGGGCTCACGGATCAACTCCATCTCCTTGGCAGGGACACAAAAGGGCTGTCT
TCAATGCTTTCATGGTTTTGTTTCCCAATGCAATAAATAGCCAGGAGCTCTCAGTTATTGCTTC
AACCGCCAGTAACAACTCTGAAGCAAGGGGGAAAAAATACTGCTTTCTTTTCGTCTTGGAATTC
CAGTAGCCATCCAGATATCATGGTGGCATCTGAGGGCGAGAAAGAAAGACAGACGTGAGTAACA
GTCACCTCCATCCATGACCCAATTCTTTCAACCCAGGGATGCATTGAGACTCCCTGCTGAAGTT
GACTTCTGGGTTGCTACAGAAAAGGGGACTTTCCATCTCACCCTGGCTTCCTGCCTCCACCCAG
TGGAGACCCCTCCCACCAAGGCACGGAGGGGGAAAGCCATTAAGCAGGGCGCAACTCCTTTGCA
GTCCCCGCTGCTGTTCTTAATCGCCTTTTCTACAGGACTCTTGTCGGTAGAGCTGGGGCACTCT
CGGTTGGTTTCCACGGCTCTTGGCTTTCTGTTTCTGAAGTCCATCCCGCACCAGCATCTTGGAA
TCTGCAGAGAGCCTGGCTCCCAGCTTTCTTGCCTGTGCCGCCATTAGAGAAAAAAAAGAAAAAG
AAAAAATATTCCATAACCTGTGTGTCTCTATAACCCAGACACGTAGACAGACAGGGGACTTTTC
TGTGTAATGCTGTTTTTCCCAAATTGCTTACTTTGGACATGAACTTGTTCTCTATCTCACACCT
GTCTGTGCTTCTTTAGAGAAAAGGATGCAGTAACTAGGGTAGAGGAAGGAATGAGTCTGGCAGT
GAGGAGGCCTAGACCCCAGGCATCTGAAGTAACAGAGCCGCTCCGAGTCGCCATATTTGATAAT
ATCTGTAACTTTAGATTGGTGTACATCTAACCTTCCCCTCATCGTGGACTTTATTAGTGAGCCT
TTCCCCAGCTAAGGAAAGGACACCTAGAACTTGAAGCAAAAAGATGGAAGGATCAGATTGCTGT
GTTTTGCTTAATAACTCATGAAATTCAGGTTGTGCTGATGACTCATTAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039089627 ⟹ XP_038945555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	31,447,966 - 31,939,847 (-)	NCBI
mRatBN7.2	12	25,811,743 - 26,303,670 (-)	NCBI

RefSeq Acc Id:

XM_039089628 ⟹ XP_038945556

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	31,447,966 - 31,924,649 (-)	NCBI
mRatBN7.2	12	25,811,743 - 26,288,094 (-)	NCBI

RefSeq Acc Id:

XM_039089631 ⟹ XP_038945559

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	31,447,966 - 31,889,617 (-)	NCBI
mRatBN7.2	12	25,811,743 - 26,253,414 (-)	NCBI

RefSeq Acc Id:

XM_063271555 ⟹ XP_063127625

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	31,447,966 - 31,939,847 (-)	NCBI

RefSeq Acc Id:

XM_063271556 ⟹ XP_063127626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	31,447,966 - 31,939,847 (-)	NCBI

RefSeq Acc Id:

XM_063271557 ⟹ XP_063127627

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	31,447,966 - 31,939,847 (-)	NCBI

RefSeq Acc Id:

XM_063271558 ⟹ XP_063127628

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	31,447,966 - 31,939,847 (-)	NCBI

RefSeq Acc Id:

XM_063271559 ⟹ XP_063127629

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	31,447,966 - 31,939,847 (-)	NCBI

RefSeq Acc Id:

XM_063271560 ⟹ XP_063127630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	31,774,165 - 31,939,847 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001070669	(Get FASTA)	NCBI Sequence Viewer
	XP_006249305	(Get FASTA)	NCBI Sequence Viewer
	XP_017453894	(Get FASTA)	NCBI Sequence Viewer
	XP_017453895	(Get FASTA)	NCBI Sequence Viewer
	XP_017453896	(Get FASTA)	NCBI Sequence Viewer
	XP_038945555	(Get FASTA)	NCBI Sequence Viewer
	XP_038945556	(Get FASTA)	NCBI Sequence Viewer
	XP_038945559	(Get FASTA)	NCBI Sequence Viewer
	XP_063127625	(Get FASTA)	NCBI Sequence Viewer
	XP_063127626	(Get FASTA)	NCBI Sequence Viewer
	XP_063127627	(Get FASTA)	NCBI Sequence Viewer
	XP_063127628	(Get FASTA)	NCBI Sequence Viewer
	XP_063127629	(Get FASTA)	NCBI Sequence Viewer
	XP_063127630	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABI94064	(Get FASTA)	NCBI Sequence Viewer
	ABI94065	(Get FASTA)	NCBI Sequence Viewer
	EDM13456	(Get FASTA)	NCBI Sequence Viewer
	EDM13457	(Get FASTA)	NCBI Sequence Viewer
	EDM13458	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001185.5
	ENSRNOP00000099195
	ENSRNOP00000108139
GenBank Protein	Q06BI3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001070669 ⟸ NM_001077201

- UniProtKB:

Q06BI3 (UniProtKB/Swiss-Prot), Q06BI2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRLPEQPGDGKPENETKGDQETPERGEEPRRSPAPDFPTWEKMPFHHVTAGLLYKGNYLNRSLS
AGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDM
DGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRVTLEELKHILYHAFRDHLTM
KDIENIIINEEESLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFAMAFIISVMLIAANQIL
RSGME

hide sequence

RefSeq Acc Id:	XP_006249305 ⟸ XM_006249243
- Peptide Label:	isoform X3
- UniProtKB:	A6J0L8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMA MRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDM QRVTLEELKHILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHSQKQNRQTCVRKS LICAFAMAFIISVMLIAANQILRSGME hide sequence

RefSeq Acc Id:	XP_017453894 ⟸ XM_017598405
- Peptide Label:	isoform X1
- UniProtKB:	A6J0L7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYPQISDHITLDPRCGCLSNLEMESLRMRQRGTKKPPKGERSHGEAQPLTSPPGKSPPNPKSLD LDCFATPREKMPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNG FISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNT IDSIFWQFDMQRVTLEELKHILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHSQK QNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME hide sequence

RefSeq Acc Id:	XP_017453895 ⟸ XM_017598406
- Peptide Label:	isoform X1
- UniProtKB:	A6J0L7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYPQISDHITLDPRCGCLSNLEMESLRMRQRGTKKPPKGERSHGEAQPLTSPPGKSPPNPKSLD LDCFATPREKMPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNG FISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNT IDSIFWQFDMQRVTLEELKHILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHSQK QNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME hide sequence

RefSeq Acc Id:	XP_017453896 ⟸ XM_017598407
- Peptide Label:	isoform X1
- UniProtKB:	A6J0L7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYPQISDHITLDPRCGCLSNLEMESLRMRQRGTKKPPKGERSHGEAQPLTSPPGKSPPNPKSLD LDCFATPREKMPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNG FISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNT IDSIFWQFDMQRVTLEELKHILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHSQK QNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME hide sequence

Ensembl Acc Id:

ENSRNOP00000001185 ⟸ ENSRNOT00000001185

RefSeq Acc Id:	XP_038945555 ⟸ XM_039089627
- Peptide Label:	isoform X1
- UniProtKB:	A6J0L7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945556 ⟸ XM_039089628
- Peptide Label:	isoform X2
- UniProtKB:	Q06BI3 (UniProtKB/Swiss-Prot), Q06BI2 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038945559 ⟸ XM_039089631
- Peptide Label:	isoform X3
- UniProtKB:	A6J0L8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127626 ⟸ XM_063271556
- Peptide Label:	isoform X2
- UniProtKB:	Q06BI3 (UniProtKB/Swiss-Prot), Q06BI2 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063127625 ⟸ XM_063271555
- Peptide Label:	isoform X1
- UniProtKB:	A6J0L7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127629 ⟸ XM_063271559
- Peptide Label:	isoform X2
- UniProtKB:	Q06BI3 (UniProtKB/Swiss-Prot), Q06BI2 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063127628 ⟸ XM_063271558
- Peptide Label:	isoform X2
- UniProtKB:	Q06BI3 (UniProtKB/Swiss-Prot), Q06BI2 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063127627 ⟸ XM_063271557
- Peptide Label:	isoform X2
- UniProtKB:	Q06BI3 (UniProtKB/Swiss-Prot), Q06BI2 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063127630 ⟸ XM_063271560
- Peptide Label:	isoform X4

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q06BI3-F1-model_v2	AlphaFold	Q06BI3	1-261	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305843	AgrOrtholog
BioCyc Gene	G2FUF-19534	BioCyc
Ensembl Genes	ENSRNOG00000000886	Ensembl, UniProtKB/Swiss-Prot
	ENSRNOG00000080098	ENTREZGENE
Ensembl Transcript	ENSRNOT00000001185.5	UniProtKB/Swiss-Prot
	ENSRNOT00000137173	ENTREZGENE
	ENSRNOT00000164359	ENTREZGENE
Gene3D-CATH	EF-hand	UniProtKB/Swiss-Prot
InterPro	Ca-binding_regulatory	UniProtKB/Swiss-Prot
	EF-hand-dom_pair	UniProtKB/Swiss-Prot
	EF_Hand_1_Ca_BS	UniProtKB/Swiss-Prot
	EF_hand_dom	UniProtKB/Swiss-Prot
	S100/CaBP-9k_CS	UniProtKB/Swiss-Prot
KEGG Report	rno:363909	UniProtKB/Swiss-Prot
NCBI Gene	363909	ENTREZGENE
PANTHER	CALCIUM-BINDING PROTEIN 8	UniProtKB/Swiss-Prot
	CALCIUM-BINDING PROTEIN 8-RELATED	UniProtKB/Swiss-Prot
Pfam	EF-hand_7	UniProtKB/Swiss-Prot
PhenoGen	Caln1	PhenoGen
PROSITE	EF_HAND_1	UniProtKB/Swiss-Prot
	EF_HAND_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000000886	RatGTEx
	ENSRNOG00000080098	RatGTEx
SMART	EFh	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47473	UniProtKB/Swiss-Prot
UniProt	A0ABK0LBY4_RAT	UniProtKB/TrEMBL
	A0ABK0LCV6_RAT	UniProtKB/TrEMBL
	A6J0L7	ENTREZGENE, UniProtKB/TrEMBL
	A6J0L8	ENTREZGENE, UniProtKB/TrEMBL
	CABP8_RAT	UniProtKB/Swiss-Prot
	Q06BI2	ENTREZGENE
	Q06BI3	ENTREZGENE
UniProt Secondary	Q06BI2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Caln1	calneuron 1	Caln1_predicted	calneuron 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Caln1_predicted	calneuron 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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