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Gene: Col14a1 (collagen type XIV alpha 1 chain) Rattus norvegicus

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Symbol:

Col14a1

Name:

collagen type XIV alpha 1 chain

RGD ID:

1305806

Description:

Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within several processes, including collagen fibril organization; regulation of cell growth involved in cardiac muscle cell development; and ventricular cardiac muscle tissue development. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in interstitial matrix. Human ortholog(s) of this gene implicated in esophagus squamous cell carcinoma. Orthologous to human COL14A1 (collagen type XIV alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

collagen alpha-1(XIV) chain; collagen, type XIV, alpha 1; collagen, type XIV, alpha 1 (undulin); LOC314981; procollagen, type XIV, alpha 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	COL14A1 (collagen type XIV alpha 1 chain)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Col14a1 (collagen, type XIV, alpha 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Col14a1 (collagen type XIV alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	COL14A1 (collagen type XIV alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	COL14A1 (collagen type XIV alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Col14a1 (collagen type XIV alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	COL14A1 (collagen type XIV alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	COL14A1 (collagen type XIV alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Col14a1 (collagen type XIV alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Col14a1 (collagen type XIV alpha 1 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	COL14A1 (collagen type XIV alpha 1 chain)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Col14a1 (collagen, type XIV, alpha 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	LOC100331704 (collagen alpha-1(XIV) chain)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Danio rerio (zebrafish):	LOC100331704 (collagen alpha-1(XIV) chain)	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	col14a1a (collagen, type XIV, alpha 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	col14a1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	col14a1	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	88,611,827 - 88,826,939 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	88,611,828 - 88,826,938 (+)	Ensembl				GRCr8
mRatBN7.2	7	86,722,093 - 86,937,215 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	86,722,094 - 86,937,214 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	88,603,806 - 88,818,960 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	90,805,004 - 91,020,168 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	90,610,464 - 90,825,601 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	95,054,877 - 95,274,073 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	95,074,236 - 95,273,298 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	95,678,302 - 95,896,126 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	91,801,534 - 92,032,966 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	83,515,260 - 83,730,170 (+)	NCBI		Celera
RGSC_v3.1	7	91,835,769 - 92,067,196 (+)	NCBI
Cytogenetic Map	7	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

esophagus squamous cell carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-butoxyethanol (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

4-nonylphenol (ISO)

4-tert-Octylphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

5-azacytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (EXP)

Azoxymethane (ISO)

benzatropine (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

Benzo[k]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bleomycin A2 (ISO)

buspirone (EXP)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP,ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

dimethylarsinic acid (EXP)

dioxygen (EXP,ISO)

diquat (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

entinostat (ISO)

erianin (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

fonofos (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

glyphosate (ISO)

indole-3-methanol (EXP)

inulin (ISO)

isotretinoin (ISO)

maneb (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

nefazodone (EXP)

nickel atom (ISO)

nimesulide (EXP)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

p-tert-Amylphenol (ISO)

panobinostat (ISO)

paracetamol (EXP)

paraquat (ISO)

parathion (ISO)

pentane-2,3-dione (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP,ISO)

potassium dichromate (ISO)

progesterone (ISO)

rofecoxib (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (EXP,ISO)

sodium arsenate (ISO)

sodium arsenite (EXP,ISO)

sodium fluoride (ISO)

succimer (ISO)

sunitinib (ISO)

terbufos (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IEA)

collagen fibril organization (ISO)

extracellular matrix organization (IBA)

homeostasis of number of cells within a tissue (ISO)

regulation of cell growth involved in cardiac muscle cell development (ISO)

tissue development (IEA)

ventricular cardiac muscle tissue development (ISO)

Cellular Component

interstitial matrix (IBA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

syndecan signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Identification of a DNA methylome profile of esophageal squamous cell carcinoma and potential plasma epigenetic biomarkers for early diagnosis.	Li X, etal., PLoS One. 2014 Jul 22;9(7):e103162. doi: 10.1371/journal.pone.0103162. eCollection 2014.
4.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:20551380	PMID:22658674	PMID:22906538	PMID:23376485	PMID:24006456	PMID:27068509

Genomics

Comparative Map Data

Col14a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	88,611,827 - 88,826,939 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	88,611,828 - 88,826,938 (+)	Ensembl				GRCr8
mRatBN7.2	7	86,722,093 - 86,937,215 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	86,722,094 - 86,937,214 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	88,603,806 - 88,818,960 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	90,805,004 - 91,020,168 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	90,610,464 - 90,825,601 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	95,054,877 - 95,274,073 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	95,074,236 - 95,273,298 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	95,678,302 - 95,896,126 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	91,801,534 - 92,032,966 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	83,515,260 - 83,730,170 (+)	NCBI		Celera
RGSC_v3.1	7	91,835,769 - 92,067,196 (+)	NCBI
Cytogenetic Map	7	q32	NCBI

COL14A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	120,124,454 - 120,373,573 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	120,059,780 - 120,373,573 (+)	Ensembl			hg38	GRCh38
GRCh37	8	121,136,693 - 121,385,812 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	121,206,533 - 121,453,454 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	8	117,326,467 - 117,573,360 (+)	NCBI		Celera
Cytogenetic Map	8	q24.12	NCBI
HuRef	8	116,457,995 - 116,704,917 (+)	NCBI		HuRef
CHM1_1	8	121,177,769 - 121,424,764 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	121,253,115 - 121,502,333 (+)	NCBI		T2T-CHM13v2.0

Col14a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	55,171,040 - 55,384,199 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	55,171,146 - 55,384,199 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	55,307,644 - 55,520,803 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	55,307,750 - 55,520,803 (+)	Ensembl			mm10	GRCm38
MGSCv37	15	55,139,305 - 55,352,358 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	55,137,834 - 55,350,884 (+)	NCBI		MGSCv36	mm8
Celera	15	56,848,017 - 57,052,928 (+)	NCBI		Celera
Cytogenetic Map	15	D1	NCBI
cM Map	15	21.96	NCBI

Col14a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	25,579,547 - 25,774,127 (+)	Ensembl
ChiLan1.0	NW_004955417	25,579,547 - 25,774,067 (+)	NCBI	ChiLan1.0	ChiLan1.0

COL14A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	137,553,479 - 137,799,154 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	113,065,502 - 113,312,629 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	116,818,467 - 117,065,385 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	119,588,512 - 119,834,226 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	119,610,929 - 119,831,880 (+)	Ensembl			panPan2	panpan1.1

COL14A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	19,033,423 - 19,249,189 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	19,011,897 - 19,248,568 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	19,046,227 - 19,261,948 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	19,362,705 - 19,578,555 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	19,363,930 - 19,578,545 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	19,089,930 - 19,305,655 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	19,189,397 - 19,405,255 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	19,420,220 - 19,638,341 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Col14a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	19,013,239 - 19,216,888 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	26,440,615 - 26,643,015 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	26,440,606 - 26,643,015 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COL14A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	18,690,198 - 18,924,971 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	18,690,197 - 18,925,111 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	19,715,672 - 19,949,740 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COL14A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	114,701,662 - 114,946,216 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	114,701,664 - 114,887,483 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	25,334,593 - 25,585,541 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Col14a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624763	17,982,646 - 18,172,904 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624763	17,982,646 - 18,172,742 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Col14a1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	229,713,639 - 229,923,541 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Col14a1
1797 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	82
Count of miRNA genes:	76
Interacting mature miRNAs:	79
Transcripts:	ENSRNOT00000067649
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	45113903	90113903	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	82111245	123048330	Rat
2317035	Aia16	Adjuvant induced arthritis QTL 16	2.71		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	71103011	106126789	Rat
1357336	Gluco6	Glucose level QTL 6	3.4		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	7	51700643	96700643	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
1298525	Cm1	Cardiac mass QTL 1	2.7		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	7	56625161	101625161	Rat
1357338	Stl17	Serum triglyceride level QTL 17	3.23		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	71621154	114982716	Rat
70159	Bp61	Blood pressure QTL 61		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	73618702	118618702	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	85043242	130043242	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	85497398	130497398	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	83626689	128626689	Rat
631529	Tls2	T-lymphoma susceptibility QTL 2	0	0.001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	7	82111382	132099989	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	55498584	105834451	Rat
1559283	Emca4	Estrogen-induced mammary cancer QTL 4	3.7		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	7	63889858	108889858	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	48475049	93475049	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
631201	Panci1	Pancreas inflammation QTL 1	0	0.001	pancreas integrity trait (VT:0010560)	percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)	7	73557047	118557047	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	82111245	123048330	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
1641908	Teswt1	Testicular weight QTL 1	3.28		testis mass (VT:1000644)	both testes wet weight (CMO:0000175)	7	82111245	96700643	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
10450862	Kidm55	Kidney mass QTL 55	4.9		kidney mass (VT:0002707)	kidney weight (CMO:0000081)	7	72725037	117725037	Rat
724537	Niddm52	Non-insulin dependent diabetes mellitus QTL 52		0.02	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	82111245	95485241	Rat
1298528	Bp169	Blood pressure QTL 169		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	62963207	107963207	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	82111245	134948181	Rat
1576303	Ept7	Estrogen-induced pituitary tumorigenesis QTL 7	3.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	7	63889858	108889858	Rat
10450856	Livw4	Liver weight QTL 4	3.8		liver mass (VT:0003402)	liver weight (CMO:0000092)	7	72725037	117725037	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	78682549	123682549	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
2303582	Gluco53	Glucose level QTL 53	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	7	48603087	93603087	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	71621154	119349044	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	71827901	136544683	Rat

Markers in Region

RH134494

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	7	88,826,602 - 88,826,799 (+)	Marker Load Pipeline
mRatBN7.2	7	86,936,878 - 86,937,075 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	95,273,738 - 95,273,934	NCBI	Rnor6.0
Rnor_5.0	7	95,895,791 - 95,895,987	UniSTS	Rnor5.0
RGSC_v3.4	7	92,032,631 - 92,032,827	UniSTS	RGSC3.4
Celera	7	83,729,835 - 83,730,031	UniSTS
RH 3.4 Map	7	604.7	UniSTS
Cytogenetic Map	7	q32	UniSTS

RH130146

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	86,935,892 - 86,936,094 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	95,272,752 - 95,272,953	NCBI	Rnor6.0
Rnor_5.0	7	95,894,805 - 95,895,006	UniSTS	Rnor5.0
RGSC_v3.4	7	92,031,645 - 92,031,846	UniSTS	RGSC3.4
Celera	7	83,728,849 - 83,729,050	UniSTS
RH 3.4 Map	7	602.9	UniSTS
Cytogenetic Map	7	q32	UniSTS

BF415927

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	86,744,928 - 86,745,143 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	95,076,623 - 95,076,837	NCBI	Rnor6.0
Rnor_5.0	7	95,700,048 - 95,700,262	UniSTS	Rnor5.0
RGSC_v3.4	7	91,824,896 - 91,825,110	UniSTS	RGSC3.4
Celera	7	83,537,578 - 83,537,792	UniSTS
RH 3.4 Map	7	612.2	UniSTS
Cytogenetic Map	7	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
11	12	67	145	91	90	59	31	59	6	283	131	11	124	74	92	31	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001130548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000067649 ⟹ ENSRNOP00000063778

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	88,611,828 - 88,826,330 (+)	Ensembl
mRatBN7.2 Ensembl	7	86,722,094 - 86,936,129 (+)	Ensembl
Rnor_6.0 Ensembl	7	95,074,236 - 95,273,298 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094987 ⟹ ENSRNOP00000093489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	88,611,828 - 88,826,938 (+)	Ensembl
mRatBN7.2 Ensembl	7	86,722,094 - 86,937,214 (+)	Ensembl

RefSeq Acc Id:

NM_001130548 ⟹ NP_001124020

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	88,611,828 - 88,826,938 (+)	NCBI
mRatBN7.2	7	86,722,094 - 86,937,214 (+)	NCBI
Rnor_6.0	7	95,054,877 - 95,274,073 (+)	NCBI
Rnor_5.0	7	95,678,302 - 95,896,126 (+)	NCBI
RGSC_v3.4	7	91,801,534 - 92,032,966 (+)	RGD
Celera	7	83,515,260 - 83,730,170 (+)	RGD

Sequence:

show sequence

TTCTTTCCTCTTATCTGATGCTGGGTGAGAGGCGAGGGGAAGGAAGCTCTGTAGGGCAGGGGGC
GGCGGGAGAGGGACAAGGAGAGGGACAGAGTGAACCACAGGAAAGAGAAGCTAATTAAGAGAGG
GTACTCTGAAGGGAGCGAGCCAGAGCAGTGGTCCGCTAAGAACCAACCGGCGGATAATCTTCCC
TAGGCGCCAAGAGGTCCCCAACCTGGGCTGGAACGTTGCCCTGCACAGGCAGCTGTTGCACCCG
ATGTAAGAGGCAGAAAATAAGATGACGATTTTGCAATGCAAGATGCGGGCCTGGCTGATTTTGG
CTTTTTTGGCAGTTGCTTATTTCTGCACCATCGTTCGGGGGCAAGTGGCTCCACCCACAAGGTT
AAGATATAATGTAATATCCCATGACAGTATACAGATTTCATGGAAAGCACCAAGAGGGAAATTT
GGTGGCTACAAACTGCTCGTGGCTCCTGCTTCAGGGGGAAAAACCAACCAGATGAATCTCCAGA
ACGGCGCAACAAAAGCCATTATTCAAGGCCTTCTGCCCGAGCAGAATTACACCGTTCAACTTAT
TGCCTACTACAAAGACAAGGAAAGCAAGCCAGCTCAGGGCCAGTTCAGAATTAAAGATTTAGAG
AAAAGAAAGGATCCAACCAAGCCCAGAGTCAAGGCTGTGGACAAAGGAAACGGAAGTAAATCAA
CTTCACCAGAAGAAATAAAATTCTTCTGCGAGACTCCAGCCATCGCTGACATTGTCATCCTGGT
GGATGGATCATGGAGTATTGGGAGATTCAACTTCAGGCTGGTGCGCAATTTCTTGGAAAACCTG
GTCACAGCGTTCAACGTGGGCTCAGAAAAGACAAGAATTGGCTTGGCACAGTACAGTGGGGACC
CTAGAATAGAGTGGCACCTGAATGCCTTTAACACGAAAGATGAAGTGATTGACGCTGTCCGAAG
CCTTCCATACAAAGGAGGAAATACCCTAACAGGTCTTGCTTTGAACTTTATTTTTGAGAATAGC
TTTAAGCCAGAAGCAGGATCGAGGAGTGGCGTTTCCAAGATTGGCATTTTAATCACAGATGGAA
AGTCCCAGGATGATATTATCCCACCTTCTAGAAACCTCCGTGAGGCTGGTGTAGAGTTGTTTGC
AATAGGGGTTAAAAATGCCGACCTGAGCGAGCTGCAGGAGATAGCCTCTGAGCCAGACAGCACC
CATGTGTACAATGTCGCTGAGTTCGACCTGATGCACACAGTGGTGGAGAGCCTGACCCGGACCG
TATGCTCCAGAGTGGAAGAGCAGGACAAGGAGATTAAAGCCTCAGCCCTTGCCACCATTGGGCC
ACCTACAGAGCTGATTACGTCTGAAGTCACCGCCAGGAGCTTTATGGTTAACTGGACTCACTCC
CCAGGAAAAGTGGAAAAATACAGAGTTGTGTATTATCCCACCAGAGGTGGAAAGCCAGAGGAGG
TGGTGGCGGATGGAAGGGTGTCTTCCATAGTGTTGAAAAACTTGATGTCTTCAACCGAGTACCA
GATAGCAGTGTTTGCAGTATCTGCCCACACGGCTAGTGAAGGCCTGCGGGGAACAGAGACCACA
TTGGCCTTACCCATGGCTTCCGACCTCGAGCTGTATGATGTGACTGAGAACAGCATGCGAGTCA
AGTGGGATGCAGTGCCTGGCGCCACAGGATATCTGATCCTCTATGCTCCTCTCACAGAAGGTCT
GGCCGGAGATGAAAAAGAGATGAAAATCGGTGAGACACACACAGACATTGAACTGAGTGGGCTA
TTCCCCAATACAGAATATACAGTCACTGTGTATGCCATGTTTGGAGAAGAGGCCAGTGACCCTG
CTACAGGACAAGAGACAACCCTACCCTTAACCCCACCAAGAAATTTGAGGATCTCCAATGTCGG
CTCTAACAGCGCTCGGTTAACCTGGGATCCCACATCGGGAAAGATCACTGGTTACAGAATTGTG
TACACCAGTGCCGACGGGACAGAAATCAATGAGGTCGAAGTCGATCCCATCACTACATTCCCTC
TGAAAGGCTTGACCCCCCTCACAGACTACTCCATTGCCATTTTCTCCATCTATGAGGAGGGGCA
GTCCTTGCCTCTGGTTGGAGAGTTTACCACAGAGGAAGTTCCCGCCCAGCAATACTTGGAAATT
GATGAGGTGAAGACAGACAGTTTTCGAGTGACCTGGCATCCGCTCTCAGCTGAGGAGGGCCAGC
ACAAGCTGATGTGGATTCCGGTCTATGGCGGGAAGACTCAGGAGGTTGCCCTCAAAGAAGAGCA
GGACTCATATGTTGTTGAAGGCCTGGACCCTGGAACTGAGTATGAAGTCTCGCTATTAGCTGTG
CTGGATGACGGAAGTGAGAGTGAGGTGGTGACCGCTGTGGGGACCACACTTGATGATTTTTGGA
CTGAAGCACCCACAACTGTAGAACCGACCAGCCCCGTGACTTCAGTTCTCCAGACAGGAATCAG
AAACCTGGTTGTAGATGATGAAGCTGCTACTAGCCTGCGGGTCACATGGGACATTTCTGACAGC
AATGTGGAGCACTTTAGGGTGACCTACCTGACAGCCCAAGGGGACCCTAAGGAAGAAGTGGTTA
TGGTGCCTGGAGTGCAGAACAGTCTCCTTCTGAAAAATCTACTTCCAGACACAGAGTATAAAGT
CACGGTGACACCCATCTACACTGTTGGAGAAGGCGTCAGCGTCTCTGCTCCTGGGAAGACTTTG
CCAACTTCTGGTCCTCAAAACTTAAGGGTCTCAGAAGAATGGTACAACCGGTTGCGCATTACAT
GGGACCCACCTTCTGCCCCCGTGAAGGGCTATAGGATTGTCTACAAACCTGTGAGTGTCCCTGG
TCAAACTCTGGAAACTTTCGTGGGTGCTGACGTCAACACCATTGTCATGACAAATCTCCTCAGT
GGAATGGACTACAATGTGAAGATCTTTGCTTCCCAGGCTGCAGGCTACAGCGACGCTCTGACTG
GCCTTGTTCAAACACTGTTCTTGGGTGTGACAGATCTCCAAGCCAATCAGGTTGAAATGACAAG
CTTGTGTGCTCGGTGGCAAATCCATCGCCATGCCACAGCCTACAGGATAGTTCTAGAATCCCTT
CAGGACACACAAGCACAAGAATCCACCGTGGGAGGAGGAGTAAACAGGCATTGCTTCTATGGAC
TTCAGCCTGACTCAGAATATAAAATCAGCGTTTATACAAAGCTCCAGGAGATAGAGGGACCGAG
CGTGAGCATCATGCAGAAAACACAATCACTTCCCACAGAACCACCAACTTTTCCTCCAACCATC
CCACCAGCAAAGGAAGTATGTAAAGCAGCCAAGGCAGACCTAGTATTCATGGTGGATGGATCCT
GGAGTATAGGAGATGACAATTTCAATAAGATCATCAACTTTCTGTATAGCACAGTGGGAGCCCT
GGACAAGATTGGTGCAGATGGAACTCAGGTGGCAATGGTTCAGTTCACTGATGACCCCCGAACA
GAATTCAAACTCGATGCTTACAAAACCAAAGAGACACTTCTTGATGCAATTAGACACATTTCCT
ACAAAGGGGGAAATACTAAAACAGGAAAAGCTATCAAGCACGTTCGAGATACCTTATTTACTGC
AGACTCAGGTACAAGGAGAGGCATCCCAAAGGTCATTGTGGTGATAACTGATGGACGGTCACAA
GATGATGTCAACAAAATCTCCAGGGAGATGCAGGCAGATGGTTACAATATCTTTGCCATCGGTG
TGGCTGATGCTGATTACTCAGAGTTGGTTCGGATCGGCAGCAAGCCCAGCTCACGTCACGTCTT
CTTTGTGGATGACTTTGATGCCTTTAAGAAAATTGAAGATGAATTAATTACTTTTGTCTGTGAA
ACTGCATCAGCAACCTGCCCAATGGTGCACAAGGATGGAGTTGATATTGCAGGATTTAAGATGA
TGGAAATGTTTGGTTTGGTTGAAAAGGATTTTTCTGCAGTGGAAGGAGTGTCTATGGAACCTGG
TACCTTCAATTTGTTCCCATGCTATCAAATCCATAAGGATGCCCTGGTTTCCCAGCCAACAAAG
TATCTGCACCCAGAAGGATTGCCTGCTGACTATACAATGACTTTTCTGTTCCGGATTCTTCCTG
ACACGCCACAGGAGCCATTTGCTCTTTGGGAGATTTTAAATAAAAAGTCTGAGCCGCTAGTTGG
GATAATTTTGGACAATGGTGGAAAGACTCTAACTTATTTCAGCTATGACTATACTGGAGATTTT
CAAACTGTCACTTTTGAAGGACCTGACATCAGGAAAATGTTCTATGGAAGCTTTCACAAGCTCC
ATGTTGTTGTCAGCAAGACTTTGGCCAAAGTGGTTGTCGACTGTAAAGAAGTTGGCCAGAAGGC
AATAAATGCGTCAGCGAATATCACTTCGGATGGTGTGGAAGTCCTAGGGAGAATGGTCAGATCG
AGAGGGCCAAATGGAAACTCTGCACCATTCCAGTTACAAATGTTTGATATCGTTTGCTCTACAT
CATGGGCCAGTAAAGACAGATGCTGTGAACTTCCGGGCCTGCGGGATGAAGAGTCCTGCCCAGA
CCTTCCACGATCCTGCTCTTGCTCAGAAACCAATGAAGTGGCTCTAGGACCAGCTGGCCCCCCA
GGTGGTCCAGGACTCCGAGGACCAAAAGGCCAACAAGGTGAACCGGGTCCGAAGGGACCAGAGG
GACCTCGGGGAGAAACAGGTCCTGCAGGACCCCAGGGCCCCCCTGGCCCCCAAGGACCCAGTGG
TCTGTCCATTCAAGGCATGCCTGGAATGCCTGGTGATAAAGGAGATAAAGGAGATGCCGGCCTT
CCTGGTCCACAGGGTGTCCCTGGAGGTGTTGGTTCACCAGGACGCGATGGCTCACCAGGCCAGA
GGGGATTTCCCGGAAAGGATGGTTCCTCTGGGCCTCCAGGACCACCTGGACCAATTGGCATTCC
TGGAGCTCCTGGTGTACCAGGGATTGCGGGCAGCATGGGACCACAAGGAGCCTTGGGGCCACCT
GGTGTCCCTGGAGCAAAGGGAGAGCGAGGTGAACGAGGAGACCTGCAGTCTCAAGCCATGGTGA
GGGCAGTGGCTCGTCAAGTATGTGAGCAGCTCATTCAGAGTCACATGGCCAGGTACACAGCCAT
CCTCAACCAAATCCCCAGCCAGTCCTCATCTATCCGGACCATCCAGGGCCCTCCTGGAGAGCCC
GGAAGACCAGGTTCACCTGGAACCCCTGGAGAACAAGGACCCCCAGGTGCCCCAGGCTTCCCAG
GAAATGCAGGAGTGCCAGGAACCCCAGGAGAACGAGGTCTAACTGGTGTCAAAGGAGATAAAGG
AAACCCAGGCATTGGAACTCAAGGCCCAAGAGGTCCACCTGGGCCAGCAGGACCTTCAGGGGAA
AGTCGTCCTGGCAGTCCTGGGCCACCTGGCTCTCCTGGACCAAGGGGTCCCCCGGGCCACCTGG
GAGTACCTGGGCCACAGGGTCCTTCTGGCCAGCCTGGATATTGTGACCCCTCCTCGTGTTCTGC
TTACGGCGTTGGAGTGTCCCATCCAGATCAACCCGAGTTCACACCGGTCCAGGACGAGCAGGAG
GCCTTGGATCTGTGGAGCGCAGGCATCTGATGACCTCAGGAGACATTGGAAGAGCAGGGGCAAG
CCCTCTTCTGGAGCTTCACCTAGCAAATGTTGTCACGTGGTTTGTACTCTACTTTGCAGAGGGA
GGCAGGGCTGATGTTATGGGGTCTATTTCCTCTGTGGCTAAGTCAATATTACTGTTTCAAGAAA
TTGTGTTTTTAAACCACCTTTTTCTGTGACACTGTTTTGACCGCACACCAGATAATTTGGTCTC
CTTCCAAAGAAGGATACACTGAACCCTGGAGCTTCTCTGTTACATCATTTCAAGTTGTAAGATA
AGTGAGAGAAGTGTGGTTATATCAGAGAGAATTGGGGGCCCAAACAACAGAAGAGTGAATTCAG
AGACTCCCTGTTTATGCCACTGACCCCATACCCGTGGCTACGAGCTTTCTGGTAATTAAGTAAC
ACCGTCACTGAGGAAACTACCTCCTTCGTGTCTAACCCGATCTTTCCAATTCATAGATTACTCA
GTAACTGGTTTCACGGGTATTCGGAATAAGAGCTAGAGTGTAGCCTTTCTAGATTTGGCAATTA
AAAAAAAAACTATAGAATCTGTTTTCCGGCAGTTTTGATTCGTATAAAATAATGACTTCCTACC
AATTTCAATGCAGAAGAGACCCATTTTTTGACAAATCATTTGTCCAGAAGTGTGTTTCAGGGCT
TGCCTCTCCTTGACTACAGGGATTGCTTTGTAAATGCAGATATGTTTTTTGAAGACTCGTTTTT
ATTCTTTTTTTATAAGCAAATAAAAACTTAAAACACC

hide sequence

RefSeq Acc Id:

XM_039079204 ⟹ XP_038935132

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	88,611,827 - 88,826,939 (+)	NCBI
mRatBN7.2	7	86,722,093 - 86,937,215 (+)	NCBI

RefSeq Acc Id:

XM_039079205 ⟹ XP_038935133

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	88,611,827 - 88,825,848 (+)	NCBI
mRatBN7.2	7	86,722,093 - 86,936,124 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001124020	(Get FASTA)	NCBI Sequence Viewer
	XP_038935132	(Get FASTA)	NCBI Sequence Viewer
	XP_038935133	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM16250	(Get FASTA)	NCBI Sequence Viewer
	EDM16251	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000063778
	ENSRNOP00000063778.4
	ENSRNOP00000093489
	ENSRNOP00000093489.1

RefSeq Acc Id:	NP_001124020 ⟸ NM_001130548
- Peptide Label:	precursor
- UniProtKB:	A6HRH1 (UniProtKB/TrEMBL), A0A8I6AK67 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTILQCKMRAWLILAFLAVAYFCTIVRGQVAPPTRLRYNVISHDSIQISWKAPRGKFGGYKLLV APASGGKTNQMNLQNGATKAIIQGLLPEQNYTVQLIAYYKDKESKPAQGQFRIKDLEKRKDPTK PRVKAVDKGNGSKSTSPEEIKFFCETPAIADIVILVDGSWSIGRFNFRLVRNFLENLVTAFNVG SEKTRIGLAQYSGDPRIEWHLNAFNTKDEVIDAVRSLPYKGGNTLTGLALNFIFENSFKPEAGS RSGVSKIGILITDGKSQDDIIPPSRNLREAGVELFAIGVKNADLSELQEIASEPDSTHVYNVAE FDLMHTVVESLTRTVCSRVEEQDKEIKASALATIGPPTELITSEVTARSFMVNWTHSPGKVEKY RVVYYPTRGGKPEEVVADGRVSSIVLKNLMSSTEYQIAVFAVSAHTASEGLRGTETTLALPMAS DLELYDVTENSMRVKWDAVPGATGYLILYAPLTEGLAGDEKEMKIGETHTDIELSGLFPNTEYT VTVYAMFGEEASDPATGQETTLPLTPPRNLRISNVGSNSARLTWDPTSGKITGYRIVYTSADGT EINEVEVDPITTFPLKGLTPLTDYSIAIFSIYEEGQSLPLVGEFTTEEVPAQQYLEIDEVKTDS FRVTWHPLSAEEGQHKLMWIPVYGGKTQEVALKEEQDSYVVEGLDPGTEYEVSLLAVLDDGSES EVVTAVGTTLDDFWTEAPTTVEPTSPVTSVLQTGIRNLVVDDEAATSLRVTWDISDSNVEHFRV TYLTAQGDPKEEVVMVPGVQNSLLLKNLLPDTEYKVTVTPIYTVGEGVSVSAPGKTLPTSGPQN LRVSEEWYNRLRITWDPPSAPVKGYRIVYKPVSVPGQTLETFVGADVNTIVMTNLLSGMDYNVK IFASQAAGYSDALTGLVQTLFLGVTDLQANQVEMTSLCARWQIHRHATAYRIVLESLQDTQAQE STVGGGVNRHCFYGLQPDSEYKISVYTKLQEIEGPSVSIMQKTQSLPTEPPTFPPTIPPAKEVC KAAKADLVFMVDGSWSIGDDNFNKIINFLYSTVGALDKIGADGTQVAMVQFTDDPRTEFKLDAY KTKETLLDAIRHISYKGGNTKTGKAIKHVRDTLFTADSGTRRGIPKVIVVITDGRSQDDVNKIS REMQADGYNIFAIGVADADYSELVRIGSKPSSRHVFFVDDFDAFKKIEDELITFVCETASATCP MVHKDGVDIAGFKMMEMFGLVEKDFSAVEGVSMEPGTFNLFPCYQIHKDALVSQPTKYLHPEGL PADYTMTFLFRILPDTPQEPFALWEILNKKSEPLVGIILDNGGKTLTYFSYDYTGDFQTVTFEG PDIRKMFYGSFHKLHVVVSKTLAKVVVDCKEVGQKAINASANITSDGVEVLGRMVRSRGPNGNS APFQLQMFDIVCSTSWASKDRCCELPGLRDEESCPDLPRSCSCSETNEVALGPAGPPGGPGLRG PKGQQGEPGPKGPEGPRGETGPAGPQGPPGPQGPSGLSIQGMPGMPGDKGDKGDAGLPGPQGVP GGVGSPGRDGSPGQRGFPGKDGSSGPPGPPGPIGIPGAPGVPGIAGSMGPQGALGPPGVPGAKG ERGERGDLQSQAMVRAVARQVCEQLIQSHMARYTAILNQIPSQSSSIRTIQGPPGEPGRPGSPG TPGEQGPPGAPGFPGNAGVPGTPGERGLTGVKGDKGNPGIGTQGPRGPPGPAGPSGESRPGSPG PPGSPGPRGPPGHLGVPGPQGPSGQPGYCDPSSCSAYGVGVSHPDQPEFTPVQDEQEALDLWSA GI hide sequence

Ensembl Acc Id:

ENSRNOP00000063778 ⟸ ENSRNOT00000067649

RefSeq Acc Id:	XP_038935132 ⟸ XM_039079204
- Peptide Label:	isoform X1
- UniProtKB:	A6HRH1 (UniProtKB/TrEMBL), A0A8I6AK67 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935133 ⟸ XM_039079205
- Peptide Label:	isoform X2
- UniProtKB:	D3ZZT9 (UniProtKB/TrEMBL), A0A8I6AK67 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000093489 ⟸ ENSRNOT00000094987

Protein Domains

Fibronectin type-III VWFA

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZZT9-F1-model_v2	AlphaFold	D3ZZT9	1-1794	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305806	AgrOrtholog
BioCyc Gene	G2FUF-33374	BioCyc
Ensembl Genes	ENSRNOG00000026415	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067649	ENTREZGENE
	ENSRNOT00000067649.5	UniProtKB/TrEMBL
	ENSRNOT00000094987	ENTREZGENE
	ENSRNOT00000094987.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.200	UniProtKB/TrEMBL
	2.60.40.10	UniProtKB/TrEMBL
	3.40.50.410	UniProtKB/TrEMBL
InterPro	Collagen	UniProtKB/TrEMBL
	ConA-like_dom	UniProtKB/TrEMBL
	ECM_Assembly_Org	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	FN_III	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	TSPN-like_N	UniProtKB/TrEMBL
	VWF_A	UniProtKB/TrEMBL
	vWFA_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:314981	UniProtKB/TrEMBL
NCBI Gene	314981	ENTREZGENE
PANTHER	COLLAGEN ALPHA	UniProtKB/TrEMBL
	COLLAGEN ALPHA-1(XIV) CHAIN	UniProtKB/TrEMBL
Pfam	Collagen	UniProtKB/TrEMBL
	fn3	UniProtKB/TrEMBL
	VWA	UniProtKB/TrEMBL
PhenoGen	Col14a1	PhenoGen
PRINTS	FNTYPEIII	UniProtKB/TrEMBL
	VWFADOMAIN	UniProtKB/TrEMBL
PROSITE	FN3	UniProtKB/TrEMBL
	VWFA	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000026415	RatGTEx
SMART	FN3	UniProtKB/TrEMBL
	TSPN	UniProtKB/TrEMBL
	VWA	UniProtKB/TrEMBL
Superfamily-SCOP	ConA_like_lec_gl	UniProtKB/TrEMBL
	FN_III-like	UniProtKB/TrEMBL
	SSF53300	UniProtKB/TrEMBL
UniProt	A0A8I6AK67	ENTREZGENE, UniProtKB/TrEMBL
	A6HRH1	ENTREZGENE, UniProtKB/TrEMBL
	D3ZZT9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-06-01	Col14a1	collagen type XIV alpha 1 chain	Col14a1	collagen, type XIV, alpha 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-25	Col14a1	collagen, type XIV, alpha 1	Col14a1_predicted	procollagen, type XIV, alpha 1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Col14a1_predicted	procollagen, type XIV, alpha 1 (predicted)		collagen, type XIV, alpha 1 (undulin) (predicted)	Name updated	1299863	APPROVED
2005-01-12	Col14a1_predicted	collagen, type XIV, alpha 1 (undulin) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)

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Imported Disease Annotations - CTD

Imported Annotations - PID (archival)