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Gene: Atmin (ATM interactor) Rattus norvegicus

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Symbol:

Atmin

Name:

ATM interactor

RGD ID:

1305781

Description:

Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; dynein complex binding activity; and transcription cis-regulatory region binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within motile cilium assembly; positive regulation of gene expression; and positive regulation of non-motile cilium assembly. Predicted to be located in nuclear body. Predicted to be active in nucleus. Orthologous to human ATMIN (ATM interactor); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cobalt dichloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Asciz; ATM/ATR-Substrate Chk2-Interacting Zn2+-finger protein; LOC315037; RGD1305781; similar to mKIAA0431 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATMIN (ATM interactor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Atmin (ATM interactor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atmin (ATM interactor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATMIN (ATM interactor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATMIN (ATM interactor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atmin (ATM interactor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATMIN (ATM interactor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATMIN (ATM interactor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atmin (ATM interactor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Atmin (ATM interactor)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Homo sapiens (human):	ATMIN (ATM interactor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OrthoFinder\|PhylomeDB)
Danio rerio (zebrafish):	atmin (ATM interactor)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	atmin	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Related Pseudogenes:

Atmin-ps1 Atmin-ps2

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	61,905,343 - 61,922,443 (+)	NCBI		GRCr8
mRatBN7.2	19	44,996,506 - 45,013,606 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	44,996,356 - 45,013,605 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	51,806,281 - 51,823,383 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	52,459,296 - 52,476,398 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	54,703,537 - 54,720,643 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	49,482,482 - 49,499,682 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	19	60,273,787 - 60,290,987 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	47,054,050 - 47,071,395 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	71,090,419 - 71,092,881 (-)	NCBI
Celera	19	44,269,716 - 44,286,805 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Atmin	Rat	developmental and epileptic encephalopathy 1		ISO	ATMIN (Homo sapiens)	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 1	ClinVar	PMID:28492532 and PMID:31780880
Atmin	Rat	giant axonal neuropathy 1		ISO	ATMIN (Homo sapiens)	8554872	ClinVar Annotator: match by term: Giant axonal neuropathy 1	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Atmin	Rat	1,2-dichloroethane	increases expression	ISO	Atmin (Mus musculus)	6480464	ethylene dichloride results in increased expression of ATMIN mRNA	CTD	PMID:28960355
Atmin	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Atmin (Mus musculus)	6480464	Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in decreased expression of ATMIN mRNA]	CTD	PMID:22206623
Atmin	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Atmin (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of ATMIN mRNA	CTD	PMID:22206623
Atmin	Rat	17beta-hydroxy-5alpha-androstan-3-one	increases expression	ISO	ATMIN (Homo sapiens)	6480464	Dihydrotestosterone results in increased expression of ATMIN mRNA	CTD	PMID:29581250
Atmin	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of ATMIN mRNA	CTD	PMID:22298810
Atmin	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Atmin (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of ATMIN mRNA	CTD	PMID:21570461
Atmin	Rat	2-hydroxypropanoic acid	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	Lactic Acid results in decreased expression of ATMIN mRNA	CTD	PMID:30851411
Atmin	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	Atmin (Mus musculus)	6480464	bisphenol S results in decreased expression of ATMIN mRNA	CTD	PMID:39298647
Atmin	Rat	all-trans-retinoic acid	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	Tretinoin results in decreased expression of ATMIN mRNA	CTD	PMID:33167477
Atmin	Rat	antimycin A	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	Antimycin A results in decreased expression of ATMIN mRNA	CTD	PMID:33512557
Atmin	Rat	benzo[a]pyrene	increases expression	ISO	ATMIN (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of ATMIN mRNA	CTD	PMID:26238291
Atmin	Rat	benzo[a]pyrene diol epoxide I	increases expression	ISO	ATMIN (Homo sapiens)	6480464	7 more ...	CTD	PMID:26238291
Atmin	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of ATMIN mRNA	CTD	PMID:25181051
Atmin	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of ATMIN mRNA	CTD	PMID:30816183 more ...
Atmin	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of ATMIN gene	CTD	PMID:28505145
Atmin	Rat	cadmium atom	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	Cadmium results in decreased expression of ATMIN mRNA	CTD	PMID:23369406
Atmin	Rat	cadmium dichloride	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of ATMIN mRNA	CTD	PMID:38568856
Atmin	Rat	captan	decreases expression	ISO	Atmin (Mus musculus)	6480464	Captan results in decreased expression of ATMIN mRNA	CTD	PMID:31558096
Atmin	Rat	CGP 52608	multiple interactions	ISO	ATMIN (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to ASCIZ gene]	CTD	PMID:28238834
Atmin	Rat	cobalt dichloride	increases expression	EXP		6480464	cobaltous chloride results in increased expression of ATMIN mRNA	CTD	PMID:24386269
Atmin	Rat	cobalt dichloride	increases expression	ISO	ATMIN (Homo sapiens)	6480464	cobaltous chloride results in increased expression of ATMIN mRNA	CTD	PMID:19376846
Atmin	Rat	cyclosporin A	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	Cyclosporine results in decreased expression of ATMIN mRNA	CTD	PMID:25562108
Atmin	Rat	deguelin	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	deguelin results in decreased expression of ATMIN mRNA	CTD	PMID:33512557
Atmin	Rat	Dibutyl phosphate	affects expression	ISO	ATMIN (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of ATMIN mRNA	CTD	PMID:37042841
Atmin	Rat	dicrotophos	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	dicrotophos results in decreased expression of ATMIN mRNA	CTD	PMID:28302478
Atmin	Rat	doxorubicin	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	Doxorubicin results in decreased expression of ATMIN mRNA	CTD	PMID:29803840
Atmin	Rat	elemental selenium	multiple interactions	ISO	ATMIN (Homo sapiens)	6480464	[Selenium co-treated with Vitamin E] results in increased expression of ATMIN mRNA	CTD	PMID:19244175
Atmin	Rat	elemental selenium	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	Selenium results in decreased expression of ATMIN mRNA	CTD	PMID:19244175
Atmin	Rat	fenpyroximate	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	fenpyroximate results in decreased expression of ATMIN mRNA	CTD	PMID:33512557
Atmin	Rat	folic acid	multiple interactions	ISO	Atmin (Mus musculus)	6480464	Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in decreased expression of ATMIN mRNA]	CTD	PMID:22206623
Atmin	Rat	leflunomide	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	leflunomide results in decreased expression of ATMIN mRNA	CTD	PMID:28988120
Atmin	Rat	methyl methanesulfonate	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	Methyl Methanesulfonate results in decreased expression of ATMIN mRNA	CTD	PMID:23649840
Atmin	Rat	N-methyl-4-phenylpyridinium	increases expression	EXP		6480464	1-Methyl-4-phenylpyridinium results in increased expression of ATMIN mRNA	CTD	PMID:28801915
Atmin	Rat	ozone	multiple interactions	ISO	ATMIN (Homo sapiens)	6480464	[Air Pollutants results in increased abundance of Ozone] which affects the expression of ATMIN mRNA	CTD	PMID:35430440
Atmin	Rat	paracetamol	increases expression	ISO	ATMIN (Homo sapiens)	6480464	Acetaminophen results in increased expression of ATMIN mRNA	CTD	PMID:26690555
Atmin	Rat	propiconazole	increases expression	ISO	Atmin (Mus musculus)	6480464	propiconazole results in increased expression of ATMIN mRNA	CTD	PMID:21278054
Atmin	Rat	pyrimidifen	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	pyrimidifen results in decreased expression of ATMIN mRNA	CTD	PMID:33512557
Atmin	Rat	rac-lactic acid	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	Lactic Acid results in decreased expression of ATMIN mRNA	CTD	PMID:30851411
Atmin	Rat	rotenone	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	Rotenone results in decreased expression of ATMIN mRNA	CTD	PMID:33512557
Atmin	Rat	selenium atom	multiple interactions	ISO	ATMIN (Homo sapiens)	6480464	[Selenium co-treated with Vitamin E] results in increased expression of ATMIN mRNA	CTD	PMID:19244175
Atmin	Rat	selenium atom	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	Selenium results in decreased expression of ATMIN mRNA	CTD	PMID:19244175
Atmin	Rat	sodium arsenite	increases expression	ISO	ATMIN (Homo sapiens)	6480464	sodium arsenite results in increased expression of ATMIN mRNA	CTD	PMID:22714537
Atmin	Rat	Soman	decreases expression	EXP		6480464	Soman results in decreased expression of ATMIN mRNA	CTD	PMID:19281266
Atmin	Rat	sunitinib	increases expression	ISO	ATMIN (Homo sapiens)	6480464	Sunitinib results in increased expression of ATMIN mRNA	CTD	PMID:31533062
Atmin	Rat	tebufenpyrad	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	4-chloro-N-((4-(1 and 1-dimethylethyl)phenyl)methyl)-3-ethyl-1-methyl-1H-pyrazole-5-carboxamide results in decreased expression of ATMIN mRNA	CTD	PMID:33512557
Atmin	Rat	titanium dioxide	decreases expression	ISO	Atmin (Mus musculus)	6480464	titanium dioxide results in decreased expression of ATMIN mRNA	CTD	PMID:29264374
Atmin	Rat	titanium dioxide	decreases methylation	ISO	Atmin (Mus musculus)	6480464	titanium dioxide results in decreased methylation of ATMIN gene	CTD	PMID:35295148
Atmin	Rat	triphenyl phosphate	affects expression	ISO	ATMIN (Homo sapiens)	6480464	triphenyl phosphate affects the expression of ATMIN mRNA	CTD	PMID:37042841
Atmin	Rat	troglitazone	decreases expression	ISO	Atmin (Mus musculus)	6480464	troglitazone results in decreased expression of ATMIN mRNA	CTD	PMID:28973697
Atmin	Rat	valproic acid	increases expression	ISO	ATMIN (Homo sapiens)	6480464	Valproic Acid results in increased expression of ATMIN mRNA	CTD	PMID:23179753
Atmin	Rat	valproic acid	affects expression	ISO	ATMIN (Homo sapiens)	6480464	Valproic Acid affects the expression of ATMIN mRNA	CTD	PMID:25979313
Atmin	Rat	valproic acid	decreases methylation	ISO	ATMIN (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of ATMIN gene	CTD	PMID:29154799
Atmin	Rat	vinclozolin	decreases expression	EXP		6480464	vinclozolin results in decreased expression of ATMIN mRNA	CTD	PMID:23034163
Atmin	Rat	vitamin E	multiple interactions	ISO	ATMIN (Homo sapiens)	6480464	[Selenium co-treated with Vitamin E] results in increased expression of ATMIN mRNA	CTD	PMID:19244175
Atmin	Rat	vitamin E	decreases expression	ISO	ATMIN (Homo sapiens)	6480464	Vitamin E results in decreased expression of ATMIN mRNA	CTD	PMID:19244175

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Atmin	Rat	motile cilium assembly	acts_upstream_of_or_within	ISO	Atmin (Mus musculus)	1624291	MGI:3640783 PMID:25294941	RGD	PMID:25294941
Atmin	Rat	motile cilium assembly	acts_upstream_of_or_within	IEA	UniProtKB:Q6P9S1 and ensembl:ENSMUSP00000104727	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Atmin	Rat	positive regulation of DNA-templated transcription	involved_in	ISO	ATMIN (Homo sapiens)	1624291	PMID:22167198	RGD	PMID:22167198
Atmin	Rat	positive regulation of DNA-templated transcription	involved_in	IEA	UniProtKB:O43313 and ensembl:ENSP00000299575	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Atmin	Rat	positive regulation of DNA-templated transcription	involved_in	ISO	Atmin (Mus musculus)	1624291	PMID:22167198	RGD	PMID:22167198
Atmin	Rat	positive regulation of DNA-templated transcription	involved_in	IEA	UniProtKB:Q6P9S1 and ensembl:ENSMUSP00000104727	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Atmin	Rat	positive regulation of gene expression	acts_upstream_of_or_within	ISO	Atmin (Mus musculus)	1624291	PMID:25294941	RGD	PMID:25294941
Atmin	Rat	positive regulation of gene expression	acts_upstream_of_or_within	IEA	UniProtKB:Q6P9S1 and ensembl:ENSMUSP00000104727	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Atmin	Rat	positive regulation of non-motile cilium assembly	acts_upstream_of_or_within	IEA	UniProtKB:Q6P9S1 and ensembl:ENSMUSP00000104727	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Atmin	Rat	positive regulation of non-motile cilium assembly	acts_upstream_of_or_within	ISO	Atmin (Mus musculus)	1624291	MGI:1861457 more ...	RGD	PMID:25294941
Atmin	Rat	positive regulation of transcription by RNA polymerase II	involved_in	ISO	Atmin (Mus musculus)	1624291	PMID:22167198	RGD	PMID:22167198
Atmin	Rat	positive regulation of transcription by RNA polymerase II	involved_in	IEA	InterPro:IPR055303	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Atmin	Rat	positive regulation of transcription by RNA polymerase II	involved_in	IEA	UniProtKB:Q6P9S1 and ensembl:ENSMUSP00000104727	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Atmin	Rat	regulation of transcription by RNA polymerase II	involved_in	IBA	FB:FBgn0035407 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Atmin	Rat	nuclear body	located_in	IEA	UniProtKB:O43313 and ensembl:ENSP00000299575	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Atmin	Rat	nuclear body	located_in	ISO	ATMIN (Homo sapiens) and UniProtKB:O43313-1	1624291		RGD	GO_REF:0000052
Atmin	Rat	nucleus	is_active_in	IBA	FB:FBgn0035407 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Atmin	Rat	DNA-binding transcription activator activity, RNA polymerase II-specific	enables	ISO	Atmin (Mus musculus)	1624291	PMID:22167198	RGD	PMID:22167198
Atmin	Rat	DNA-binding transcription activator activity, RNA polymerase II-specific	enables	IEA	UniProtKB:Q6P9S1 and ensembl:ENSMUSP00000104727	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Atmin	Rat	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IBA	MGI:2682328 and PANTHER:PTN000834395	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Atmin	Rat	dynein complex binding	enables	ISO	ATMIN (Homo sapiens)	1624291	UniProtKB:P63167 and PMID:22167198	RGD	PMID:22167198
Atmin	Rat	dynein complex binding	enables	IEA	UniProtKB:O43313 and ensembl:ENSP00000299575	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Atmin	Rat	protein binding	enables	ISO	ATMIN (Homo sapiens)	1624291	UniProtKB:Q13315 and PMID:17525732	RGD	PMID:17525732
Atmin	Rat	transcription cis-regulatory region binding	enables	ISO	Atmin (Mus musculus)	1624291	PMID:22167198	RGD	PMID:22167198
Atmin	Rat	transcription cis-regulatory region binding	enables	IEA	InterPro:IPR055303	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Atmin	Rat	transcription cis-regulatory region binding	enables	IEA	UniProtKB:Q6P9S1 and ensembl:ENSMUSP00000104727	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Atmin	Rat	transcription cis-regulatory region binding	enables	IBA	MGI:2682328 and PANTHER:PTN000834395	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:22167198	PMID:25294941

Atmin
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	61,905,343 - 61,922,443 (+)	NCBI		GRCr8
mRatBN7.2	19	44,996,506 - 45,013,606 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	44,996,356 - 45,013,605 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	51,806,281 - 51,823,383 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	52,459,296 - 52,476,398 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	54,703,537 - 54,720,643 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	49,482,482 - 49,499,682 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	19	60,273,787 - 60,290,987 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	47,054,050 - 47,071,395 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	71,090,419 - 71,092,881 (-)	NCBI
Celera	19	44,269,716 - 44,286,805 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

ATMIN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	81,035,842 - 81,047,350 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	81,035,842 - 81,047,350 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	81,069,447 - 81,080,955 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	79,626,959 - 79,638,452 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	65,367,853 - 65,379,348 (+)	NCBI		Celera
Cytogenetic Map	16	q23.2	NCBI
HuRef	16	66,826,345 - 66,837,755 (+)	NCBI		HuRef
CHM1_1	16	82,480,826 - 82,492,320 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	87,097,372 - 87,108,882 (+)	NCBI		T2T-CHM13v2.0

Atmin
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	117,670,132 - 117,687,184 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	117,670,132 - 117,687,184 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	116,943,383 - 116,960,445 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	116,943,393 - 116,960,445 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	119,467,293 - 119,484,345 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	119,829,385 - 119,846,422 (+)	NCBI		MGSCv36	mm8
Celera	8	121,162,779 - 121,179,840 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	63.37	NCBI

Atmin
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955522	3,829,865 - 3,835,449 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955522	3,829,875 - 3,835,449 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATMIN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	90,788,124 - 90,797,462 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	96,707,583 - 96,719,096 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	61,642,394 - 61,653,921 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	81,075,807 - 81,081,641 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

ATMIN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	70,779,676 - 70,795,829 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	70,782,853 - 70,795,888 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	70,728,614 - 70,744,741 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	71,084,025 - 71,100,838 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	71,086,034 - 71,100,940 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	71,026,491 - 71,043,285 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	70,861,713 - 70,878,528 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	71,339,240 - 71,356,057 (-)	NCBI		UU_Cfam_GSD_1.0

Atmin
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	56,872,492 - 57,019,573 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	28,711,984 - 28,719,281 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936547	3,192,904 - 3,339,985 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATMIN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	7,208,158 - 7,223,155 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	7,209,512 - 7,223,195 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ATMIN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	66,492,443 - 66,503,813 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	66,492,599 - 66,503,908 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	9,331,660 - 9,343,059 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atmin
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	6,293,132 - 6,306,426 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	6,290,715 - 6,305,780 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Atmin
73 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	479
Count of miRNA genes:	246
Interacting mature miRNAs:	319
Transcripts:	ENSRNOT00000015180
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	2316121	47316121	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	29322490	57337602	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	33838214	55283146	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	569374	45569374	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	44340214	55283277	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	15605023	46559041	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	569374	45569374	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2187927	46708701	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat

RH133499

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	19	q12	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001191786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC105857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015180 ⟹ ENSRNOP00000015180

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	44,996,356 - 45,013,605 (+)	Ensembl

RefSeq Acc Id:

NM_001191786 ⟹ NP_001178715

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,905,343 - 61,922,442 (+)	NCBI
mRatBN7.2	19	44,996,506 - 45,013,605 (+)	NCBI
Rnor_6.0	19	49,482,482 - 49,499,682 (+)	NCBI
Rnor_5.0	19	60,273,787 - 60,290,987 (+)	NCBI
Celera	19	44,269,716 - 44,286,805 (+)	NCBI

Sequence:

show sequence

ATGGCGGCCACGGAGGCGGCGGCGGCTGAGTCTGCGGGTCCGGCCCCGGGTGTCCCGGTCACGCCGGCGAGCACGCGGGGAGCCGCCGCCGCCTCAAGCCCGTGGAGGCCGTCGGAGTCGCGACTGCA
AGGCAGTCGACCGCGACTGGCCAGGGCTCGGGCCGCGGCCCCGGTGCCACCGGCCCGGGAGCTGATCCAGCCGTCTGTGAGCGAGCTGTCCCGGGCTGTGCGCACCAATATTCTGTGCACTGTGCGCG
GCTGCGGCAAGATCCTGCCCAACAGTCCTGCGCTCAACATGCACCTAGTCAAGAGCCACCGACTGCAGGATGGCATAGTAAATCCAACAATAAGAAAAGATTTGAAAACTGTACCGAAATTCTACTGT
TGTCCAATCAAAGGATGCCCTCGAGGCCCTGACAGACCATTTTCTCAGTTTTCTCTGGTTAAACAGCACTTTATGAAAATGCATGCGGAGAAGAAGCACAAGTGCAGTAAGTGCAGTAACTCCTATGG
CACCGAGTGGGACCTGAGAAGACACGAGGAAGATTGTGGCAAGACCTTCCAGTGTACGTGTGGCTGTCCCTATGCCAGCAGAACCGCACTGCAGTCTCACATCTACCGGACTGGCCACGAGATCCCTG
CAGAACACAGAGACCCACCTAGTAAAAAAAGGAAGATAGAAAGCCAAACGCTGTCCACTAAAACCATTGGACCACTGGGTGACCAACCAGCCCCTCGCCAAGATGCCCATGAGCCACGTGCTTCGGAA
GTGAAGCTAGCAGCCTCCCTTGAAGACTCTTGTAGCTCCCACACCAAAAAGCAGAGCTTCCCAACGCCTCCTAGGTGCCCCCAGAAGCTGCTTCTACCAAAGCCCAAGGTGGCTCTGGTTAAACTCCC
AGTCATGCAGTTTTCCCCTGTGCCTGTCTTTGTGCCTACAGCGGACTCCTCGGCCCAGCCCGTGGTGTTAGGTGTGGATCACAGTTCTGCAGCGGGTGCTGTGCACTTAGTACCCTTGTCAGTAGGAA
CCTTGATCCTCAGCCTGGATTCAGAGGCCTGCTCTCTGAAGGAGAGCCTACCTCTCTCAAAAATTATCAGTCCTGTTGTCGAGCCAATGAATACAGGTGTTCAGGTGAACTTGGGCAAAAGTCTGTGT
CGTCCTTTGCAAGAGGGCGGGAGTGTGTGTCAGAAGAACAGCATTTCCTCAGCCAACGTGCAGACAGATCTGTCATATGCCTCAGCCAACTTGATACCCTCTGCTCAGTGGCTTGGCCCCGACTCCTC
TGTGTCATCGTGTTCTCAGACTGACCTGTCCTTTGATTCTCAAGTGTCCCTTCCTGTTAGTGTCCACACCCAGACGTTGGTGCCCAGCTCTAAGGTCACTTCATCCATAGCTGCCCAGACAGATGCGT
TTCTAGACGCCTGTTTCCAGCCCAGTGGGGTCTCCAGAGAAACCCAAACCTGTAGGATACAAAACCGCACAGATGACCCAGTGCCGGTAGGCCACCCTGGGCTGTGTGGGGACATTTTTGAAGGCGTC
CATTCGTCATATGGTGTGCCCAGCGACAACATCATGAGTAGCAGTTTAGTTGCAGAGACAGTAACTCACAGTCTGGTACCTCAGAGTGACCCCAAGATCCTAAGCCAAGTCATGGAAAAGTCTGCGCC
CGTGTTAAACTTCAGTGCCCAGAACAGCATGCTTCCTTCACAAAACATGACCGATAACCAGACCCAAACCATAGATCTACTGAGTGACCTAGAAAACATCTTGTCCAGTAATCTGCCAGGCCAAACGC
TGGATAACCGGAGTCTCTTGTCTGACACAAACCCCGGGCCTGACGCCCAGCTCCCATCAGGTTCAGCGCAGAACTCCGGGATTGATTTTGATATTGAAGAGTTCCTCTCAGCCTCAAATATCCAGACT
CAGACTGAGGAGAGTGAACTCAGCTCCATGAGCACTGAGCCCGTCTTGGAGTCCCTGGACATCGAGACACAGACTGACCTCTTCCTGTCCGATCCCTGCACACAGCCCTATGGGCTCAGGGCAGGTTC
GGGTTTCCTGGGCCTCGAGATGTTTGACACACAGACCCAGACAGACTTGAACTTCTTCCTGGACAGCAGTCCTCACCTGCCCCTGGGCAGCATCCTGAGACACTCTAGCTTCTCCATGAGCACCGACT
CCTCTGACACAGAAACCCAAACGGAAGGGGCCTCCCCAGCTCGACATGCACCCACGCTGGAGAGCAAGGTCCAGCTGAGCAGCACAGAAACACAGACCATGAGTTCTGGCTTCGAGCCCCTGGGGAAC
TTGTTCCTCACCAGCAACGAGACTCAGACAGCAATGGATGACTTCCTTCTAGCTGATTTGGCCTGGAATACGATGGAGTCCCAGTTCAGTTCTGTGGAAACCCAGACATGCGCAGAGCTGCATGCTGT
CTCCAGCTTCTGAAAGTGCAACCAGGCACCCCACTCCTTGTGGGCTTAGAACATGGGGACAGGGACAGCGGCATGGACTGGGGTGCAGTCAGTGGGGCAGCTGTTTGGGTTCTCTGCAGTTCTTGGTG
TTTTGTACTCGTGAACACAAGATTGGTGTGCAAATGTGAGTGTATTATAAAGTGTAAAGTGTTGCTCTTAAGTGTCGCCTGCGTCTGCTCCTGTGTAGCCATTCTATTTTACACTGTAAAACTTAGAC
CTGTCTAGTTAAAGCCTAGCTTACCAGGCAGTAGGGTGCAAGCTTTGCAACTGCTTTAACTGAGGAACGGCACACTTAAATGGCACCTCAAACGCTCAGACAACGCTTGTGTGGCTGCTGACTCCTGA
GATGCCACCACCTTGCCTTGTCACGTCCCTCTGACTTGGAAGCACCAGGGGAAGCCATAGCTGTCTTTAGCTTTTATGACAGTTTTTAGTCTCTGCTGTCTCTTCTCTCCCAAGCTGTGACTGCTGGC
AGCTTTGTGTGCCATCCTTCTCTCTGTGAGGTGACCGGCCATTGTGGGAACAGCGAGCACTTAGTGTAAATAACAGTTTAGTAAGAGGAAGGCATCCAGCCTGTGGAGATGTGCACTGTGGAAACCCA
TCGTCTTTTTTTTTGTTGTTGTTTTTTATCTTGGGCTGATCCTGCTTCATGGAAAAGCTTTTCTCTTCTCTCTTGATAGTGTTGATCAAAAAGATCTCTGTGACCAAATCTGTGGGATTGCCACGTGA
CAGACAGTAGCCAGCTGTAATTACACAGGGGCTAGATGGTAGTTACTGGTTGACCCCAGAGCTTCTAGCTCTCTATAAATTGGGGTTCCTGTGACTCCCCACTCTTTGTGCTCGGTTGATTTGCTAGA
ACTCAGGGATACCGTTTCTGTGAAGGGTTAGACTGGGTAGAAAGGGGGCAGAGTACGTCCATGGCTTCTCTAGGCACAACACCAACCACGTCTGTGTGGTTCCTTGCAGAAACCTTCCAAACCCAGTC
TTGCAGGGTTAATGGCTCCTTCGTTGTGTGGGTAGAGAGTTAACTTAAACCATTAGTGATCAACTTAACCTTGAGTGTTACCCTTCCCAGTTGCGTTGGGGGGTAGGGATGAAGCTGTAAATATCCCA
ACCTTTCAGTCATTAGTTATGCCTTGGTCTCCCCTGTGACTTGTCCCCATCCTAATATTACCCGGAAGCTAGCAGCTACCAATGACCTCATAGCAAGCAAAAGCAAAATATGTTTCCGAATGCTTCGG
GTTTGGGGGAAGTTATGTGCAAATACACACTTTACATCACCACCCCACAAACATCCTTCCTGCTCCACAGGAGACCGTGGGCCTACCCGACTGTAATGTACTCAGAGACCCTCTAAGGATTAAAAAGG
AAAATGTGGGATGAGGAAAAGACATTTCTGCCCAGCCCCCTGTCAGTATGCTGCACTTCGAACCTTGATAGGAGGAGCAGGGCCCTCAGAGTCTTTCCTTCCATCCACCCCCATCTTTTCCTTCGCTC
AGGCAAACAGATGATGTGTACCTTGAGACTAGCAACTGTAGAATAGATCCATCAGTAGTATGCTAACCTAGAGCCTGTTAGGATACATTCTTTAAAGAGGAAAAAGTCTGGAGACTAACTGCTCCAAT
AGATAAAACACTCTCATTCTGAGTGGAGAGTGAGGTCTAGCATGCCTTGGGGGGCTCTCTGTGCTAAGTAGATCATGGATTCATAGCTGTTGCCCAACTCAGAGGCAAATCAGAATGAGCACAGCCTG
GGGACCCTTTCAGTCTAGCTTGGAAATCCCTGTTCTTTCTGTAGCATAGGTTTGTGCTGCCACAAGCTGAACCTTCAAAATAAAACCTAAGGGGGCTGGTGATGACTCATTAAATAAATTGGTATTGC
TGCCGTCCTGTCCCATTCACCCGATGCAAAGGACTTGGTAATGGGCTAATAACACACCCGGCAGAGGAGTGCAACCCAGGAGCTAAACCGTGGTTTTGGTCACAGTCGTCTGTGAATGTGAGTTTCAG
AAGAGACATAAAGCCTTAACTTAGATTTTCTGTTGTGTTGGAATTGTCGCTGCCTTAACGCTCAAGCCCTGTTTAAGCCCTCCGGCCCCGGGAGAGCTGCATGTGTGCTCGTGGTTCTTTGTAAATAG
AAGTGCAGTGATCTATGGCTTTAAGTTTTTGTGTCTGTGGCAATGTGTCTTTATATATAGTTACAGGAAAAAGAATGGAGCATGTAATTGTCCTTCATGTGCAAGAACTGTTCCCACCAAACCTTAGT
TACCTGAACTCCCCTAAGGTTGTAAACATAAATTCAGTGATTAAAGAGAATTCTACACCTTTC

hide sequence

RefSeq Acc Id:

XM_039097804 ⟹ XP_038953732

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,914,712 - 61,922,443 (+)	NCBI
mRatBN7.2	19	45,005,875 - 45,013,606 (+)	NCBI


Protein RefSeqs	NP_001178715	(Get FASTA)	NCBI Sequence Viewer
	XP_038953732	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05858	(Get FASTA)	NCBI Sequence Viewer
	EDL92639	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015180
	ENSRNOP00000015180.8

RefSeq Acc Id:

NP_001178715 ⟸ NM_001191786

- UniProtKB:

F1LN81 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAATEAAAAESAGPAPGVPVTPASTRGAAAASSPWRPSESRLQGSRPRLARARAAAPVPPARELIQPSVSELSRAVRTNILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVNPTIRKDLKTVPKFYC
CPIKGCPRGPDRPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLRRHEEDCGKTFQCTCGCPYASRTALQSHIYRTGHEIPAEHRDPPSKKRKIESQTLSTKTIGPLGDQPAPRQDAHEPRASE
VKLAASLEDSCSSHTKKQSFPTPPRCPQKLLLPKPKVALVKLPVMQFSPVPVFVPTADSSAQPVVLGVDHSSAAGAVHLVPLSVGTLILSLDSEACSLKESLPLSKIISPVVEPMNTGVQVNLGKSLC
RPLQEGGSVCQKNSISSANVQTDLSYASANLIPSAQWLGPDSSVSSCSQTDLSFDSQVSLPVSVHTQTLVPSSKVTSSIAAQTDAFLDACFQPSGVSRETQTCRIQNRTDDPVPVGHPGLCGDIFEGV
HSSYGVPSDNIMSSSLVAETVTHSLVPQSDPKILSQVMEKSAPVLNFSAQNSMLPSQNMTDNQTQTIDLLSDLENILSSNLPGQTLDNRSLLSDTNPGPDAQLPSGSAQNSGIDFDIEEFLSASNIQT
QTEESELSSMSTEPVLESLDIETQTDLFLSDPCTQPYGLRAGSGFLGLEMFDTQTQTDLNFFLDSSPHLPLGSILRHSSFSMSTDSSDTETQTEGASPARHAPTLESKVQLSSTETQTMSSGFEPLGN
LFLTSNETQTAMDDFLLADLAWNTMESQFSSVETQTCAELHAVSSF

hide sequence

RefSeq Acc Id:	XP_038953732 ⟸ XM_039097804
- Peptide Label:	isoform X1
- UniProtKB:	Q3B8Q7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000015180 ⟸ ENSRNOT00000015180

Protein Domains

C2H2-type

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LN81-F1-model_v2	AlphaFold	F1LN81	1-478	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-5560	BioCyc
Ensembl Genes	ENSRNOG00000011422	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015180	ENTREZGENE
	ENSRNOT00000015180.8	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7455943	IMAGE-MGC_LOAD
InterPro	ATMIN	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
KEGG Report	rno:315037	UniProtKB/TrEMBL
MGC_CLONE	MGC:125240	IMAGE-MGC_LOAD
NCBI Gene	315037	ENTREZGENE
PANTHER	ATM INTERACTOR	UniProtKB/TrEMBL
	ATM INTERACTOR	UniProtKB/TrEMBL
PhenoGen	Atmin	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011422	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
UniProt	F1LN81	ENTREZGENE, UniProtKB/TrEMBL
	Q3B8Q7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-31	Atmin	ATM interactor	Asciz	ATM/ATR-Substrate Chk2-Interacting Zn2+-finger protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Asciz	ATM/ATR-Substrate Chk2-Interacting Zn2+-finger protein	RGD1305781	similar to mKIAA0431 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1305781	similar to mKIAA0431 protein	RGD1305781_predicted	similar to mKIAA0431 protein (predicted)	Symbol and Name status set to approved	1299863	APPROVED
2005-01-20	RGD1305781_predicted	similar to mKIAA0431 protein (predicted)	LOC315037_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC315037_predicted	similar to mKIAA0431 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar