Nop16 (NOP16 nucleolar protein) - Rat Genome Database

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Gene: Nop16 (NOP16 nucleolar protein) Rattus norvegicus
Analyze
Symbol: Nop16
Name: NOP16 nucleolar protein
RGD ID: 1305727
Description: Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be located in nucleoplasm. Predicted to be active in nucleolus. Orthologous to human NOP16 (NOP16 nucleolar protein); INTERACTS WITH (+)-schisandrin B; 1,3,5-trinitro-1,3,5-triazinane; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC306768; NOP16 nucleolar protein homolog; NOP16 nucleolar protein homolog (yeast); nucleolar protein 16; RGD1305727; similar to Protein CGI-117 (Protein HSPC111)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81710,028,058 - 10,032,975 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1710,028,034 - 10,033,038 (+)EnsemblGRCr8
mRatBN7.21710,022,950 - 10,027,867 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1710,022,932 - 10,027,867 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1710,037,238 - 10,042,029 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01711,570,603 - 11,575,213 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01710,033,675 - 10,038,466 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01710,559,811 - 10,564,728 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1710,559,680 - 10,564,733 (+)Ensemblrn6Rnor6.0
Rnor_5.01712,685,809 - 12,690,726 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41716,084,950 - 16,089,867 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1710,095,915 - 10,100,861 (+)NCBICelera
RGSC_v3.11716,084,922 - 16,089,862 (+)NCBI
Cytogenetic Map17p14NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3,5-trinitro-1,3,5-triazinane  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
furan  (EXP)
glafenine  (EXP)
hydrogen peroxide  (ISO)
isotretinoin  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
menadione  (ISO)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
Nivalenol  (ISO)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Nop16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81710,028,058 - 10,032,975 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1710,028,034 - 10,033,038 (+)EnsemblGRCr8
mRatBN7.21710,022,950 - 10,027,867 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1710,022,932 - 10,027,867 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1710,037,238 - 10,042,029 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01711,570,603 - 11,575,213 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01710,033,675 - 10,038,466 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01710,559,811 - 10,564,728 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1710,559,680 - 10,564,733 (+)Ensemblrn6Rnor6.0
Rnor_5.01712,685,809 - 12,690,726 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41716,084,950 - 16,089,867 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1710,095,915 - 10,100,861 (+)NCBICelera
RGSC_v3.11716,084,922 - 16,089,862 (+)NCBI
Cytogenetic Map17p14NCBI
NOP16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385176,383,946 - 176,388,598 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5176,383,933 - 176,388,927 (-)Ensemblhg38GRCh38
GRCh375175,810,949 - 175,815,599 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365175,743,548 - 175,748,194 (-)NCBIBuild 36Build 36hg18NCBI36
Celera5172,686,561 - 172,690,862 (+)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5170,735,505 - 170,740,326 (-)NCBIHuRef
CHM1_15175,243,887 - 175,248,711 (-)NCBICHM1_1
T2T-CHM13v2.05176,928,308 - 176,932,956 (-)NCBIT2T-CHM13v2.0
Nop16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391354,732,004 - 54,737,921 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1354,731,998 - 54,737,903 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381354,584,191 - 54,590,097 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1354,584,185 - 54,590,090 (-)Ensemblmm10GRCm38
MGSCv371354,685,552 - 54,691,435 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361354,593,813 - 54,599,696 (-)NCBIMGSCv36mm8
Celera1355,650,567 - 55,656,450 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1328.83NCBI
Nop16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540828,684,179 - 28,689,709 (-)Ensembl
ChiLan1.0NW_00495540828,684,179 - 28,689,709 (-)NCBIChiLan1.0ChiLan1.0
NOP16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24171,463,030 - 171,467,650 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15169,602,560 - 169,607,189 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05171,680,699 - 171,685,361 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15178,752,866 - 178,757,841 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5178,751,464 - 178,757,841 (-)EnsemblpanPan2panpan1.1
NOP16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1436,938,455 - 36,944,408 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl436,938,450 - 36,942,811 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha436,905,984 - 36,911,947 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0437,306,097 - 37,312,062 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl437,306,111 - 37,312,039 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1437,131,382 - 37,137,345 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0437,318,967 - 37,324,945 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0437,827,989 - 37,833,952 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nop16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213121,630,289 - 121,636,756 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936597655,199 - 661,683 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936597655,191 - 661,675 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLTB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl281,488,092 - 81,495,014 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1281,488,191 - 81,498,623 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2283,139,815 - 83,146,423 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NOP16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12378,387,634 - 78,392,405 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2378,387,877 - 78,392,238 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660759,516,283 - 9,520,941 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nop16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473313,742,013 - 13,747,416 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473313,742,012 - 13,747,360 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Nop16
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11472,926,876 - 72,931,717 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nop16
7 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:425
Count of miRNA genes:231
Interacting mature miRNAs:272
Transcripts:ENSRNOT00000023320
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17926675540968173Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17436005727233623Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920650523859062Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131706603Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920650523859062Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)17122181410Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17136045694Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17121499218Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
1581553Pur14Proteinuria QTL 145.30.0001urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17798524316523460Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17857434232199534Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17138037084Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920650523859062Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17436005727233623Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17212084322087569Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122877318Rat

Markers in Region
RH128546  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21710,027,560 - 10,027,751 (+)MAPPERmRatBN7.2
Rnor_6.01710,564,422 - 10,564,612NCBIRnor6.0
Rnor_5.01712,690,420 - 12,690,610UniSTSRnor5.0
RGSC_v3.41716,089,561 - 16,089,751UniSTSRGSC3.4
Celera1710,100,555 - 10,100,745UniSTS
RH 3.4 Map17110.9UniSTS
Cytogenetic Map17p14UniSTS
RH133064  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2122,777,024 - 2,777,234 (-)MAPPERmRatBN7.2
mRatBN7.21710,021,906 - 10,022,116 (+)MAPPERmRatBN7.2
Rnor_6.01710,558,768 - 10,558,977NCBIRnor6.0
Rnor_6.0124,546,604 - 4,546,813NCBIRnor6.0
Rnor_5.01712,684,766 - 12,684,975UniSTSRnor5.0
Rnor_5.0126,674,667 - 6,674,876UniSTSRnor5.0
RGSC_v3.41716,083,907 - 16,084,116UniSTSRGSC3.4
RGSC_v3.4121,366,613 - 1,366,822UniSTSRGSC3.4
Celera124,592,000 - 4,592,209UniSTS
Celera1710,094,872 - 10,095,081UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map17p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000023320   ⟹   ENSRNOP00000023320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1710,028,034 - 10,032,968 (+)Ensembl
mRatBN7.2 Ensembl1710,022,932 - 10,027,867 (+)Ensembl
Rnor_6.0 Ensembl1710,559,680 - 10,564,733 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115861   ⟹   ENSRNOP00000076503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1710,028,034 - 10,032,968 (+)Ensembl
mRatBN7.2 Ensembl1710,022,932 - 10,027,865 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000145585   ⟹   ENSRNOP00000107191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1710,028,034 - 10,033,038 (+)Ensembl
RefSeq Acc Id: NM_001047095   ⟹   NP_001040560
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81710,028,058 - 10,032,975 (+)NCBI
mRatBN7.21710,022,950 - 10,027,867 (+)NCBI
Rnor_6.01710,559,811 - 10,564,728 (+)NCBI
Rnor_5.01712,685,809 - 12,690,726 (+)NCBI
RGSC_v3.41716,084,950 - 16,089,867 (+)RGD
Celera1710,095,915 - 10,100,861 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001040560 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI58563 (Get FASTA)   NCBI Sequence Viewer  
  BAE94253 (Get FASTA)   NCBI Sequence Viewer  
  CAJ88854 (Get FASTA)   NCBI Sequence Viewer  
  EDL94045 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000023320
  ENSRNOP00000023320.4
GenBank Protein Q1RP77 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001040560   ⟸   NM_001047095
- UniProtKB: Q1RP77 (UniProtKB/Swiss-Prot),   B0BMU2 (UniProtKB/TrEMBL),   A0A8I5Y0C6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000023320   ⟸   ENSRNOT00000023320
Ensembl Acc Id: ENSRNOP00000076503   ⟸   ENSRNOT00000115861
Ensembl Acc Id: ENSRNOP00000107191   ⟸   ENSRNOT00000145585

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q1RP77-F1-model_v2 AlphaFold Q1RP77 1-178 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700322
Promoter ID:EPDNEW_R10846
Type:initiation region
Name:Nop16_1
Description:NOP16 nucleolar protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01710,559,793 - 10,559,853EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305727 AgrOrtholog
BioCyc Gene G2FUF-10174 BioCyc
Ensembl Genes ENSRNOG00000017284 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000023320 ENTREZGENE
  ENSRNOT00000023320.8 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:9088902 IMAGE-MGC_LOAD
InterPro Ribosome_biogenesis_Nop16 UniProtKB/Swiss-Prot
KEGG Report rno:306768 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187246 IMAGE-MGC_LOAD
NCBI Gene 306768 ENTREZGENE
PANTHER NUCLEOLAR PROTEIN 16 UniProtKB/Swiss-Prot
  PTHR13243 UniProtKB/Swiss-Prot
Pfam Nop16 UniProtKB/Swiss-Prot
PhenoGen Nop16 PhenoGen
RatGTEx ENSRNOG00000017284 RatGTEx
UniProt A0A8I5Y0C6 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LND4_RAT UniProtKB/TrEMBL
  B0BMU2 ENTREZGENE, UniProtKB/TrEMBL
  NOP16_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-18 Nop16  NOP16 nucleolar protein  Nop16  NOP16 nucleolar protein homolog (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-14 Nop16  NOP16 nucleolar protein homolog (yeast)  RGD1305727  similar to Protein CGI-117 (Protein HSPC111)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1305727  similar to Protein CGI-117 (Protein HSPC111)   RGD1305727_predicted  similar to Protein CGI-117 (Protein HSPC111) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1305727_predicted  similar to Protein CGI-117 (Protein HSPC111) (predicted)  LOC306768_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC306768_predicted  similar to Protein CGI-117 (Protein HSPC111) (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL