Rab40b (Rab40b, member RAS oncogene family) - Rat Genome Database

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Gene: Rab40b (Rab40b, member RAS oncogene family) Rattus norvegicus
Analyze
Symbol: Rab40b
Name: Rab40b, member RAS oncogene family
RGD ID: 1305663
Description: Predicted to enable GTPase activity and ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in several processes, including negative regulation of actin filament bundle assembly; proteasome-mediated ubiquitin-dependent protein catabolic process; and regulation of lamellipodium organization. Predicted to be located in several cellular components, including lamellipodium membrane; perinuclear region of cytoplasm; and ruffle. Predicted to be active in endosome; plasma membrane; and synaptic vesicle. Orthologous to several human genes including RAB40B (RAB40B, member RAS oncogene family); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC303754; ras-related protein Rab-40B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810107,129,801 - 107,157,375 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10107,129,801 - 107,157,457 (-)EnsemblGRCr8
mRatBN7.210106,631,514 - 106,659,090 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,631,514 - 106,659,090 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10111,733,874 - 111,761,463 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010111,196,923 - 111,224,513 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,551,924 - 106,579,498 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,557,798 - 110,585,424 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,557,729 - 110,585,376 (-)Ensemblrn6Rnor6.0
Rnor_5.010110,143,366 - 110,171,085 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410110,590,703 - 110,618,223 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera10105,169,974 - 105,197,417 (-)NCBICelera
RGSC_v3.110110,605,202 - 110,632,641 (-)NCBI
Cytogenetic Map10q32.3NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,1-dichloroethene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
antirheumatic drug  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
caffeine  (ISO)
capecitabine  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxifluridine  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
fucoxanthin  (ISO)
gentamycin  (EXP)
glucose  (ISO)
indometacin  (ISO)
leflunomide  (ISO)
maneb  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
N-nitrosodimethylamine  (EXP)
nickel atom  (ISO)
nickel dichloride  (EXP)
okadaic acid  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP)
paraquat  (ISO)
perfluorooctanoic acid  (EXP)
quercetin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
Tributyltin oxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
valdecoxib  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22042847  


Genomics

Comparative Map Data
Rab40b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810107,129,801 - 107,157,375 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10107,129,801 - 107,157,457 (-)EnsemblGRCr8
mRatBN7.210106,631,514 - 106,659,090 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,631,514 - 106,659,090 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10111,733,874 - 111,761,463 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010111,196,923 - 111,224,513 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,551,924 - 106,579,498 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,557,798 - 110,585,424 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,557,729 - 110,585,376 (-)Ensemblrn6Rnor6.0
Rnor_5.010110,143,366 - 110,171,085 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410110,590,703 - 110,618,223 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera10105,169,974 - 105,197,417 (-)NCBICelera
RGSC_v3.110110,605,202 - 110,632,641 (-)NCBI
Cytogenetic Map10q32.3NCBI
RAB40B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,654,973 - 82,698,698 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1782,654,973 - 82,698,698 (-)Ensemblhg38GRCh38
GRCh371780,612,849 - 80,656,574 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361778,208,238 - 78,249,802 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341778,208,237 - 78,249,802NCBI
Celera1777,209,247 - 77,250,771 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1776,014,951 - 76,056,442 (-)NCBIHuRef
CHM1_11780,701,145 - 80,742,977 (-)NCBICHM1_1
T2T-CHM13v2.01783,529,323 - 83,573,130 (-)NCBIT2T-CHM13v2.0
Rab40b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911121,246,951 - 121,279,080 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11121,246,951 - 121,279,077 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3811121,356,121 - 121,388,251 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11121,356,125 - 121,388,251 (-)Ensemblmm10GRCm38
MGSCv3711121,217,435 - 121,249,565 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3611121,172,215 - 121,204,335 (-)NCBIMGSCv36mm8
Celera11133,093,587 - 133,125,778 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1185.28NCBI
Rab40b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955506479,516 - 512,362 (+)Ensembl
ChiLan1.0NW_004955506480,236 - 509,038 (+)NCBIChiLan1.0ChiLan1.0
RAB40B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21999,196,529 - 99,241,990 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117104,100,556 - 104,145,357 (-)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl1782,872,403 - 82,902,803 (-)EnsemblpanPan2panpan1.1
RAB40B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha9359,952 - 379,474 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.09351,762 - 371,277 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9351,795 - 371,277 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19345,847 - 365,366 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.09507,101 - 526,608 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.09582,386 - 601,900 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
RAB40B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12493,315 - 516,962 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.112492,298 - 516,965 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.212221,054 - 245,023 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB40B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,558,970 - 74,595,967 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1674,559,763 - 74,595,841 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607746,199,797 - 46,237,650 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab40b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480111,363,537 - 11,389,183 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462480111,363,539 - 11,389,201 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rab40b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1962,641,646 - 62,669,271 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rab40b
129 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:512
Count of miRNA genes:258
Interacting mature miRNAs:318
Transcripts:ENSRNOT00000054917
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1065390777107713808Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093723381107556066Rat
8657410Bp374Blood pressure QTL 374heart left ventricle size trait (VT:0002753)heart left ventricle end-diastolic diameter (CMO:0000982)1067476608107713808Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063719161107713808Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
12903252Cm113Cardiac mass QTL 1130.047heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068920187107713808Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1064939013107713808Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076951790107713808Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)1065307813107713808Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1073599825107713808Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1089039175107713808Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070698731107713808Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
12903269Am15Aortic mass QTL 150.042aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
12903266Cm114Cardiac mass QTL 1140.02heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1066817119107713808Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1097202388107556066Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1581559Eae18Experimental allergic encephalomyelitis QTL 180.00002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1066108888107555881Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
12880372Am12Aortic mass QTL 120.003aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087807758107713808Rat
12880375Kidm66Kidney mass QTL 660.009kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
12880370Cm105Cardiac mass QTL 1050.008heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
12880371Cm106Cardiac mass QTL 1060.007heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1076128947107713808Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1091127270107556066Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091727883107713808Rat
11565453Kidm58Kidney mass QTL 580.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
2301405Cm69Cardiac mass QTL 690.031heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1097202388107556066Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 88 59 6 352 188 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000054917   ⟹   ENSRNOP00000051800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10107,129,801 - 107,157,457 (-)Ensembl
mRatBN7.2 Ensembl10106,631,514 - 106,659,090 (-)Ensembl
Rnor_6.0 Ensembl10110,557,729 - 110,585,376 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000165135   ⟹   ENSRNOP00000110333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10107,129,801 - 107,141,597 (-)Ensembl
RefSeq Acc Id: NM_001107076   ⟹   NP_001100546
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810107,129,801 - 107,157,375 (-)NCBI
mRatBN7.210106,631,514 - 106,659,090 (-)NCBI
Rnor_6.010110,557,798 - 110,585,424 (-)NCBI
Rnor_5.010110,143,366 - 110,171,085 (-)NCBI
RGSC_v3.410110,590,703 - 110,618,223 (-)RGD
Celera10105,169,974 - 105,197,417 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001100546 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI68956 (Get FASTA)   NCBI Sequence Viewer  
  EDM06950 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000051800
  ENSRNOP00000051800.3
  ENSRNOP00000110333.1
RefSeq Acc Id: NP_001100546   ⟸   NM_001107076
- UniProtKB: B5DF78 (UniProtKB/TrEMBL),   F7F5I6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000051800   ⟸   ENSRNOT00000054917
Ensembl Acc Id: ENSRNOP00000110333   ⟸   ENSRNOT00000165135
Protein Domains
SOCS box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DF78-F1-model_v2 AlphaFold B5DF78 1-279 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697993
Promoter ID:EPDNEW_R8518
Type:multiple initiation site
Name:Rab40b_1
Description:Rab40b, member RAS oncogene family
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.010110,585,428 - 110,585,488EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305663 AgrOrtholog
BioCyc Gene G2FUF-22356 BioCyc
Ensembl Genes ENSRNOG00000036661 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000054917 ENTREZGENE
  ENSRNOT00000054917.5 UniProtKB/TrEMBL
  ENSRNOT00000165135.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Ras_GTPase UniProtKB/TrEMBL
  Small_GTP_bd UniProtKB/TrEMBL
  Small_GTPase_Rab UniProtKB/TrEMBL
  SOCS_box_dom_like UniProtKB/TrEMBL
  SOCS_C UniProtKB/TrEMBL
KEGG Report rno:303754 UniProtKB/TrEMBL
NCBI Gene 303754 ENTREZGENE
PANTHER LD44762P UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
PhenoGen Rab40b PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  SOCS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000036661 RatGTEx
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
  SOCS UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
Superfamily-SCOP SSF158235 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0ABK0M0T4_RAT UniProtKB/TrEMBL
  B5DF78 ENTREZGENE, UniProtKB/TrEMBL
  F7F5I6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rab40b  Rab40b, member RAS oncogene family   Rab40b_predicted  Rab40b, member RAS oncogene family (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rab40b_predicted  Rab40b, member RAS oncogene family (predicted)      Symbol and Name status set to approved 70820 APPROVED