Pfdn1 (prefoldin subunit 1) - Rat Genome Database

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Gene: Pfdn1 (prefoldin subunit 1) Rattus norvegicus
Analyze
Symbol: Pfdn1
Name: prefoldin subunit 1
RGD ID: 1305603
Description: Predicted to enable amyloid-beta binding activity; protein folding chaperone; and unfolded protein binding activity. Predicted to be involved in negative regulation of amyloid fibril formation and protein folding. Predicted to act upstream of or within B cell activation; actin cytoskeleton organization; and brain development. Predicted to be part of prefoldin complex. Predicted to be active in centrosome and cytoplasm. Orthologous to human PFDN1 (prefoldin subunit 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC361310; prefoldin 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,288,210 - 28,341,198 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1828,287,913 - 28,341,123 (-)EnsemblGRCr8
mRatBN7.21828,014,145 - 28,067,148 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,014,145 - 28,067,064 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1828,141,323 - 28,194,236 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01828,903,409 - 28,956,326 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,238,656 - 28,291,565 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,233,987 - 29,290,447 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,233,987 - 29,290,447 (-)Ensemblrn6Rnor6.0
Rnor_5.01828,940,034 - 28,997,334 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41829,043,386 - 29,096,475 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1827,742,853 - 27,795,443 (-)NCBICelera
RGSC_v3.11829,070,391 - 29,138,459 (-)NCBI
Cytogenetic Map18p11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (ISO)
cytoplasm  (IBA)
prefoldin complex  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16876117   PMID:18566413  


Genomics

Comparative Map Data
Pfdn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,288,210 - 28,341,198 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1828,287,913 - 28,341,123 (-)EnsemblGRCr8
mRatBN7.21828,014,145 - 28,067,148 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,014,145 - 28,067,064 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1828,141,323 - 28,194,236 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01828,903,409 - 28,956,326 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,238,656 - 28,291,565 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,233,987 - 29,290,447 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,233,987 - 29,290,447 (-)Ensemblrn6Rnor6.0
Rnor_5.01828,940,034 - 28,997,334 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41829,043,386 - 29,096,475 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1827,742,853 - 27,795,443 (-)NCBICelera
RGSC_v3.11829,070,391 - 29,138,459 (-)NCBI
Cytogenetic Map18p11NCBI
PFDN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,245,035 - 140,303,101 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,245,035 - 140,303,113 (-)Ensemblhg38GRCh38
GRCh375139,624,620 - 139,682,686 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365139,604,819 - 139,662,873 (-)NCBIBuild 36Build 36hg18NCBI36
Build 345139,604,835 - 139,662,847NCBI
Celera5135,701,310 - 135,759,316 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5134,769,914 - 134,827,849 (-)NCBIHuRef
CHM1_15139,057,759 - 139,115,827 (-)NCBICHM1_1
T2T-CHM13v2.05140,770,478 - 140,828,531 (-)NCBIT2T-CHM13v2.0
Pfdn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,536,732 - 36,587,548 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,536,729 - 36,587,577 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381836,403,679 - 36,454,495 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,403,676 - 36,454,524 (-)Ensemblmm10GRCm38
MGSCv371836,563,333 - 36,614,149 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361836,529,653 - 36,580,469 (-)NCBIMGSCv36mm8
Celera1836,859,471 - 36,910,850 (-)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
Pfdn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955418351,078 - 414,292 (+)Ensembl
ChiLan1.0NW_004955418351,078 - 414,292 (+)NCBIChiLan1.0ChiLan1.0
PFDN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24135,504,946 - 135,564,989 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15133,644,503 - 133,702,578 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05135,611,791 - 135,669,895 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15141,729,128 - 141,786,822 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5141,729,128 - 141,786,822 (-)EnsemblpanPan2panpan1.1
PFDN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,454,139 - 35,519,818 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,454,404 - 35,519,725 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha232,557,224 - 32,588,680 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0235,909,878 - 35,975,476 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl235,907,816 - 35,975,361 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1232,961,926 - 33,027,195 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,829,331 - 33,894,632 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,582,250 - 34,647,518 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pfdn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,296,230 - 152,359,310 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365319,252,216 - 9,311,581 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365319,252,195 - 9,311,531 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PFDN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,011,063 - 142,077,925 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12142,011,568 - 142,078,000 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22147,954,676 - 148,021,374 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PFDN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12342,892,818 - 42,953,540 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2342,892,401 - 42,953,491 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603434,931,427 - 34,992,605 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pfdn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474333,012,922 - 33,083,654 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474333,012,920 - 33,083,776 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pfdn1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1157,916,190 - 7,973,693 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pfdn1
353 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:132
Count of miRNA genes:96
Interacting mature miRNAs:123
Transcripts:ENSRNOT00000025353
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181564228031610627Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181221668431644508Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182682218671822186Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182682218671822186Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181522610142690662Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182682218671822186Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182682218671822186Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)182641582171415821Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182682218671822186Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182682218671822186Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182682218671822186Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181221668431644508Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228031610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18381190230809809Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat

Markers in Region
D18Rat35  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21828,026,021 - 28,026,196 (+)MAPPERmRatBN7.2
Rnor_6.01829,245,863 - 29,246,037NCBIRnor6.0
Rnor_5.01828,951,910 - 28,952,084UniSTSRnor5.0
RGSC_v3.41829,055,262 - 29,055,436UniSTSRGSC3.4
RGSC_v3.41829,055,261 - 29,055,436RGDRGSC3.4
Celera1827,754,729 - 27,754,909UniSTS
RGSC_v3.11829,081,908 - 29,082,082RGD
RH 3.4 Map18390.1UniSTS
RH 3.4 Map18390.1RGD
RH 2.0 Map18521.3RGD
FHH x ACI Map1819.38RGD
Cytogenetic Map18p11UniSTS
D18Rat59  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21828,050,464 - 28,050,665 (+)MAPPERmRatBN7.2
Rnor_6.01829,270,520 - 29,270,720NCBIRnor6.0
Rnor_5.01828,976,567 - 28,976,767UniSTSRnor5.0
RGSC_v3.41829,079,671 - 29,079,990RGDRGSC3.4
RGSC_v3.41829,079,703 - 29,079,903UniSTSRGSC3.4
Celera1827,778,941 - 27,779,141UniSTS
RGSC_v3.11829,106,349 - 29,106,549RGD
RH 3.4 Map18390.2RGD
RH 3.4 Map18390.2UniSTS
RH 2.0 Map18520.9RGD
SHRSP x BN Map1812.6699RGD
Cytogenetic Map18p11UniSTS
RH128014  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21828,014,635 - 28,014,819 (+)MAPPERmRatBN7.2
Rnor_6.01829,234,478 - 29,234,661NCBIRnor6.0
Rnor_5.01828,940,525 - 28,940,708UniSTSRnor5.0
RGSC_v3.41829,043,877 - 29,044,060UniSTSRGSC3.4
Celera1827,743,344 - 27,743,527UniSTS
RH 3.4 Map18390.0UniSTS
Cytogenetic Map18p11UniSTS
PMC18810P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01206,487,422 - 206,487,559NCBIRnor5.0
RGSC_v3.41187,303,086 - 187,303,222UniSTSRGSC3.4
Celera1180,278,983 - 180,279,119UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map3q35UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map8q24UniSTS
PMC350564P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01206,487,427 - 206,487,551NCBIRnor5.0
RGSC_v3.41187,303,091 - 187,303,214UniSTSRGSC3.4
Celera1180,278,988 - 180,279,111UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map3q35UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map8q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000025353   ⟹   ENSRNOP00000025353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1828,288,210 - 28,341,123 (-)Ensembl
mRatBN7.2 Ensembl1828,014,145 - 28,067,064 (-)Ensembl
Rnor_6.0 Ensembl1829,233,987 - 29,290,447 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099632   ⟹   ENSRNOP00000085908
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1828,288,934 - 28,341,123 (-)Ensembl
mRatBN7.2 Ensembl1828,014,547 - 28,067,064 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099811   ⟹   ENSRNOP00000086719
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1828,028,463 - 28,067,064 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102443   ⟹   ENSRNOP00000087707
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1828,303,848 - 28,341,123 (-)Ensembl
mRatBN7.2 Ensembl1828,029,783 - 28,067,064 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115511   ⟹   ENSRNOP00000085736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1828,287,913 - 28,341,123 (-)Ensembl
mRatBN7.2 Ensembl1828,014,145 - 28,064,166 (-)Ensembl
RefSeq Acc Id: NM_001108427   ⟹   NP_001101897
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,288,210 - 28,341,123 (-)NCBI
mRatBN7.21828,014,145 - 28,067,064 (-)NCBI
Rnor_6.01829,233,987 - 29,290,447 (-)NCBI
Rnor_5.01828,940,034 - 28,997,334 (-)NCBI
RGSC_v3.41829,043,386 - 29,096,475 (-)RGD
Celera1827,742,853 - 27,795,443 (-)RGD
Sequence:
RefSeq Acc Id: XM_039096961   ⟹   XP_038952889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,288,617 - 28,341,198 (-)NCBI
mRatBN7.21828,014,549 - 28,067,148 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001101897 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952889 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL76293 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025353
  ENSRNOP00000025353.4
  ENSRNOP00000085736.2
  ENSRNOP00000085908
  ENSRNOP00000085908.1
  ENSRNOP00000087707.1
RefSeq Acc Id: NP_001101897   ⟸   NM_001108427
- UniProtKB: D3ZX38 (UniProtKB/TrEMBL),   A6J311 (UniProtKB/TrEMBL),   A0A8I6A4I0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025353   ⟸   ENSRNOT00000025353
RefSeq Acc Id: XP_038952889   ⟸   XM_039096961
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A3F6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085736   ⟸   ENSRNOT00000115511
Ensembl Acc Id: ENSRNOP00000087707   ⟸   ENSRNOT00000102443
Ensembl Acc Id: ENSRNOP00000086719   ⟸   ENSRNOT00000099811
Ensembl Acc Id: ENSRNOP00000085908   ⟸   ENSRNOT00000099632

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZX38-F1-model_v2 AlphaFold D3ZX38 1-122 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700719
Promoter ID:EPDNEW_R11242
Type:initiation region
Name:Pfdn1_1
Description:prefoldin subunit 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01829,290,427 - 29,290,487EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305603 AgrOrtholog
BioCyc Gene G2FUF-7876 BioCyc
Ensembl Genes ENSRNOG00000018653 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025353 ENTREZGENE
  ENSRNOT00000025353.7 UniProtKB/TrEMBL
  ENSRNOT00000099632 ENTREZGENE
  ENSRNOT00000099632.2 UniProtKB/TrEMBL
  ENSRNOT00000102443.2 UniProtKB/TrEMBL
  ENSRNOT00000115511.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.370 UniProtKB/TrEMBL
InterPro PFD_beta-like UniProtKB/TrEMBL
  Prefoldin UniProtKB/TrEMBL
KEGG Report rno:361310 UniProtKB/TrEMBL
NCBI Gene 361310 ENTREZGENE
PANTHER PREFOLDIN SUBUNIT 1 UniProtKB/TrEMBL
  PREFOLDIN SUBUNIT 1-RELATED UniProtKB/TrEMBL
Pfam Prefoldin_2 UniProtKB/TrEMBL
PhenoGen Pfdn1 PhenoGen
RatGTEx ENSRNOG00000018653 RatGTEx
Superfamily-SCOP Prefoldin UniProtKB/TrEMBL
UniProt A0A8I6A3F6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A4I0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A8A6_RAT UniProtKB/TrEMBL
  A6J311 ENTREZGENE, UniProtKB/TrEMBL
  D3ZX38 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-02-26 Pfdn1  prefoldin subunit 1  Pfdn1  prefoldin 1   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Pfdn1  prefoldin 1   Pfdn1_predicted  prefoldin 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Pfdn1_predicted  prefoldin 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED