Dpep3 (dipeptidase 3) - Rat Genome Database

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Gene: Dpep3 (dipeptidase 3) Rattus norvegicus
Analyze
Symbol: Dpep3
Name: dipeptidase 3
RGD ID: 1305484
Description: Predicted to enable dipeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in acrosomal vesicle and membrane. Predicted to be active in plasma membrane. Orthologous to human DPEP3 (dipeptidase 3); INTERACTS WITH bisphenol A; gentamycin; Monobutylphthalate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC364994; MGC94276; putative membrane-bound dipeptidase 3
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,778,079 - 50,786,451 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1950,777,579 - 50,783,741 (-)EnsemblGRCr8
mRatBN7.21933,868,229 - 33,876,609 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,868,242 - 33,873,896 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1940,683,774 - 40,689,427 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,337,088 - 41,342,741 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,635,659 - 43,641,330 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,946,516 - 37,955,199 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,946,722 - 37,952,501 (-)Ensemblrn6Rnor6.0
Rnor_5.01948,813,850 - 48,822,090 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41935,814,990 - 35,820,643 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1933,295,787 - 33,301,440 (-)NCBICelera
RGSC_v3.11935,819,870 - 35,825,524 (-)NCBI
Cytogenetic Map19q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IEA,ISO)

Cellular Component
acrosomal vesicle  (IEA,ISO,ISS)
membrane  (IEA,ISO,ISS)
plasma membrane  (IBA,IEA,ISO,ISS)
side of membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12738806   PMID:15489334   PMID:20339383   PMID:21724266  


Genomics

Comparative Map Data
Dpep3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,778,079 - 50,786,451 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1950,777,579 - 50,783,741 (-)EnsemblGRCr8
mRatBN7.21933,868,229 - 33,876,609 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,868,242 - 33,873,896 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1940,683,774 - 40,689,427 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,337,088 - 41,342,741 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,635,659 - 43,641,330 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,946,516 - 37,955,199 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,946,722 - 37,952,501 (-)Ensemblrn6Rnor6.0
Rnor_5.01948,813,850 - 48,822,090 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41935,814,990 - 35,820,643 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1933,295,787 - 33,301,440 (-)NCBICelera
RGSC_v3.11935,819,870 - 35,825,524 (-)NCBI
Cytogenetic Map19q12NCBI
DPEP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,975,663 - 67,980,499 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,975,663 - 67,980,554 (-)Ensemblhg38GRCh38
GRCh371668,009,566 - 68,014,402 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,567,067 - 66,571,867 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341666,567,067 - 66,571,867NCBI
Celera1652,518,023 - 52,522,909 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,883,134 - 53,888,020 (-)NCBIHuRef
CHM1_11669,417,636 - 69,422,522 (-)NCBICHM1_1
T2T-CHM13v2.01673,771,436 - 73,776,272 (-)NCBIT2T-CHM13v2.0
Dpep3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,700,152 - 106,706,051 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,700,145 - 106,706,061 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm388105,973,520 - 105,979,419 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,973,513 - 105,979,429 (-)Ensemblmm10GRCm38
MGSCv378108,497,420 - 108,503,319 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368108,862,649 - 108,868,548 (-)NCBIMGSCv36mm8
Celera8110,201,572 - 110,207,471 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.07NCBI
DPEP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21877,501,843 - 77,507,401 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11683,413,255 - 83,420,308 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01648,316,563 - 48,341,504 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,703,929 - 67,708,817 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,703,929 - 67,708,817 (-)EnsemblpanPan2panpan1.1
LOC489748
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,517,919 - 81,522,098 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,518,072 - 81,522,075 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha581,508,182 - 81,512,060 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0581,953,364 - 81,957,393 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl581,953,204 - 81,957,389 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1581,779,586 - 81,783,615 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,461,884 - 81,465,762 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,104,060 - 82,107,938 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101963195
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,258,945 - 41,263,396 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,325,821 - 18,329,878 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,325,821 - 18,329,878 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DPEP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,583,317 - 28,587,773 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1628,583,037 - 28,586,856 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2626,032,397 - 26,036,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DPEP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,463,999 - 59,468,971 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023667730246 - 5,112 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dpep3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11725,712,899 - 25,718,725 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Dpep3
43 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:60
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000026809
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19799775052997750Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)191922068964220689Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19799775052997750Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)194622677874246245Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)193128753251431640Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19799775052997750Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19799775052997750Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)194072709254856850Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)192010930665109306Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)194072709254856850Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)194072709254856850Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
11 12 57 103 86 85 54 84 54 6 323 174 11 74 76 91 31 5 5

Sequence


Ensembl Acc Id: ENSRNOT00000026809   ⟹   ENSRNOP00000026809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1950,777,579 - 50,783,741 (-)Ensembl
mRatBN7.2 Ensembl1933,868,242 - 33,873,896 (-)Ensembl
Rnor_6.0 Ensembl1937,946,722 - 37,952,501 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000149904   ⟹   ENSRNOP00000104061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1950,779,208 - 50,783,741 (-)Ensembl
RefSeq Acc Id: NM_001008383   ⟹   NP_001008384
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,778,088 - 50,783,741 (-)NCBI
mRatBN7.21933,868,242 - 33,873,896 (-)NCBI
Rnor_6.01937,946,823 - 37,952,476 (-)NCBI
Rnor_5.01948,813,850 - 48,822,090 (-)NCBI
RGSC_v3.41935,814,990 - 35,820,643 (-)RGD
Celera1933,295,787 - 33,301,440 (-)RGD
Sequence:
RefSeq Acc Id: XM_006255517   ⟹   XP_006255579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,778,079 - 50,786,451 (-)NCBI
mRatBN7.21933,868,229 - 33,876,609 (-)NCBI
Rnor_6.01937,946,516 - 37,955,199 (-)NCBI
Rnor_5.01948,813,850 - 48,822,090 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039097913   ⟹   XP_038953841
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,779,206 - 50,784,221 (-)NCBI
mRatBN7.21933,869,772 - 33,874,426 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001008384 (Get FASTA)   NCBI Sequence Viewer  
  XP_006255579 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953841 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH85826 (Get FASTA)   NCBI Sequence Viewer  
  EDL92429 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000026809
  ENSRNOP00000026809.3
  ENSRNOP00000104061
GenBank Protein Q5U2X4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001008384   ⟸   NM_001008383
- Peptide Label: precursor
- UniProtKB: Q5U2X4 (UniProtKB/Swiss-Prot),   A6IYV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255579   ⟸   XM_006255517
- Peptide Label: isoform X1
- UniProtKB: Q5U2X4 (UniProtKB/Swiss-Prot),   A6IYV1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000026809   ⟸   ENSRNOT00000026809
RefSeq Acc Id: XP_038953841   ⟸   XM_039097913
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000104061   ⟸   ENSRNOT00000149904

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2X4-F1-model_v2 AlphaFold Q5U2X4 1-488 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701097
Promoter ID:EPDNEW_R11621
Type:multiple initiation site
Name:Dpep3_1
Description:dipeptidase 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01937,952,508 - 37,952,568EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305484 AgrOrtholog
BioCyc Gene G2FUF-5795 BioCyc
Ensembl Genes ENSRNOG00000019757 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000026809 ENTREZGENE
  ENSRNOT00000026809.6 UniProtKB/Swiss-Prot
  ENSRNOT00000149904 ENTREZGENE
Gene3D-CATH Metal-dependent hydrolases UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7131855 IMAGE-MGC_LOAD
InterPro Dipep_AS UniProtKB/Swiss-Prot
  Metal_Hydrolase UniProtKB/Swiss-Prot
  Pept_M19 UniProtKB/Swiss-Prot
KEGG Report rno:364994 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94276 IMAGE-MGC_LOAD
NCBI Gene 364994 ENTREZGENE
PANTHER PTHR10443 UniProtKB/Swiss-Prot
  PTHR10443:SF14 UniProtKB/Swiss-Prot
Pfam Peptidase_M19 UniProtKB/Swiss-Prot
PhenoGen Dpep3 PhenoGen
PROSITE RENAL_DIPEPTIDASE_1 UniProtKB/Swiss-Prot
  RENAL_DIPEPTIDASE_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000019757 RatGTEx
Superfamily-SCOP SSF51556 UniProtKB/Swiss-Prot
UniProt A0ABK0LRC6_RAT UniProtKB/TrEMBL
  A6IYV1 ENTREZGENE, UniProtKB/TrEMBL
  DPEP3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Dpep3  dipeptidase 3  Dpep3_predicted  dipeptidase 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Dpep3_predicted  dipeptidase 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED