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Gene: Fbxo10 (F-box protein 10) Rattus norvegicus

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Symbol:

Fbxo10

Name:

F-box protein 10

RGD ID:

1305465

Description:

Predicted to be involved in regulation of apoptotic process and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Orthologous to human FBXO10 (F-box protein 10); INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

F-box only protein 10; LOC362511

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FBXO10 (F-box protein 10)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Fbxo10 (F-box protein 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fbxo10 (F-box protein 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FBXO10 (F-box protein 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FBXO10 (F-box protein 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fbxo10 (F-box protein 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FBXO10 (F-box protein 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FBXO10 (F-box protein 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fbxo10 (F-box protein 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Fbxo10 (F-box protein 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FBXO10 (F-box protein 10)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fbxo10 (F-box protein 10)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ecpas (Ecm29 proteasome adaptor and scaffold)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fbxo10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Candidate Gene For:

Mcs24 Mcs23

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	64,092,709 - 64,139,054 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	64,092,709 - 64,160,923 (-)	Ensembl				GRCr8
mRatBN7.2	5	59,297,016 - 59,343,429 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	59,297,045 - 59,343,348 (-)	Ensembl				mRatBN7.2
Rnor_6.0	5	60,589,881 - 60,636,551 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	60,591,023 - 60,658,564 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	65,098,937 - 65,145,415 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	61,601,192 - 61,626,997 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	57,865,548 - 57,911,937 (-)	NCBI		Celera
RGSC_v3.1	5	61,600,257 - 61,668,355 (-)	NCBI
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Mammary Neoplasms (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (EXP)

6-propyl-2-thiouracil (EXP)

aldehydo-D-glucose (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

Cuprizon (EXP)

D-glucose (ISO)

diallyl trisulfide (EXP)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

fenvalerate (EXP)

FR900359 (ISO)

gentamycin (EXP)

glucose (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methoxychlor (EXP)

N-acetyl-beta-D-glucosamine (ISO)

N-acetyl-D-glucosamine (ISO)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

ozone (ISO)

paracetamol (EXP)

paraquat (EXP)

pirinixic acid (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

biological_process (ND)

regulation of apoptotic process (IBA,ISO)

ubiquitin-dependent protein catabolic process (IBA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation
6.	Rat Mcs5a is a compound quantitative trait locus with orthologous human loci that associate with breast cancer risk.	Samuelson DJ, et al., Proc Natl Acad Sci U S A. 2007 Apr 2; 104(15):6299-304.

Additional References at PubMed

PMID:19028597	PMID:23431138

Genomics

Comparative Map Data

Fbxo10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	64,092,709 - 64,139,054 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	64,092,709 - 64,160,923 (-)	Ensembl				GRCr8
mRatBN7.2	5	59,297,016 - 59,343,429 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	59,297,045 - 59,343,348 (-)	Ensembl				mRatBN7.2
Rnor_6.0	5	60,589,881 - 60,636,551 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	60,591,023 - 60,658,564 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	65,098,937 - 65,145,415 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	61,601,192 - 61,626,997 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	57,865,548 - 57,911,937 (-)	NCBI		Celera
RGSC_v3.1	5	61,600,257 - 61,668,355 (-)	NCBI
Cytogenetic Map	5	q22	NCBI

FBXO10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	37,510,892 - 37,576,380 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	37,510,892 - 37,576,380 (-)	Ensembl			hg38	GRCh38
GRCh37	9	37,510,889 - 37,576,377 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	37,500,889 - 37,566,250 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	37,531,279 - 37,566,249	NCBI
Celera	9	37,444,118 - 37,509,479 (-)	NCBI		Celera
Cytogenetic Map	9	p13.2	NCBI
HuRef	9	37,462,933 - 37,528,298 (-)	NCBI		HuRef
CHM1_1	9	37,512,589 - 37,577,946 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	37,534,560 - 37,600,086 (-)	NCBI		T2T-CHM13v2.0

Fbxo10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	45,034,248 - 45,084,555 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	45,034,247 - 45,084,604 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	45,034,248 - 45,084,604 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	45,034,247 - 45,084,604 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	45,047,120 - 45,097,476 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	45,055,352 - 45,107,518 (-)	NCBI		MGSCv36	mm8
Celera	4	45,054,546 - 45,104,948 (-)	NCBI		Celera
Cytogenetic Map	4	B1	NCBI
cM Map	4	23.68	NCBI

Fbxo10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	28,897,288 - 28,969,374 (+)	Ensembl
ChiLan1.0	NW_004955419	28,915,083 - 28,969,374 (+)	NCBI	ChiLan1.0	ChiLan1.0

FBXO10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	87,015,023 - 87,081,740 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	87,022,136 - 87,087,686 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	37,355,861 - 37,421,321 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	38,279,653 - 38,345,040 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	38,279,653 - 38,345,040 (-)	Ensembl			panPan2	panpan1.1

FBXO10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	53,833,335 - 53,885,416 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	53,835,003 - 53,896,930 (-)	Ensembl			canFam3	CanFam3.1
ROS_Cfam_1.0	11	54,943,033 - 55,006,116 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	54,943,057 - 55,010,840 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	53,441,237 - 53,504,304 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	53,470,465 - 53,533,935 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	54,166,914 - 54,229,985 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Fbxo10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	168,738,262 - 168,807,656 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	5,283,828 - 5,355,392 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	5,285,844 - 5,355,212 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FBXO10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	238,232,867 - 238,308,625 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	238,232,855 - 238,308,661 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	266,180,500 - 266,241,944 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FBXO10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	43,010,040 - 43,075,920 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	42,992,013 - 43,074,290 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	40,063,942 - 40,143,983 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fbxo10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624930	1,120,573 - 1,170,788 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624930	1,120,571 - 1,170,856 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Fbxo10
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	1,420,328 - 1,464,606 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Fbxo10
202 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	58
Count of miRNA genes:	54
Interacting mature miRNAs:	57
Transcripts:	ENSRNOT00000016875
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	32751649	77751649	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	38011670	83011670	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	52665372	94894052	Rat
6907115	Mcs29	Mammary carcinoma susceptibility QTL 29			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	38004331	83004331	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	38011670	83011670	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	38011670	83011670	Rat
1331782	Rf36	Renal function QTL 36	3.296		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	39019942	102105896	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	33311673	78311673	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	32751649	77751649	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	39985948	84985948	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33311673	78311673	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	39526924	84526924	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	48523123	91770353	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	60511627	105511627	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	26023211	71023211	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	56546393	101546393	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	23671493	68671493	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	86	59	6	350	186	11	139	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001071167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_342829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016875 ⟹ ENSRNOP00000016875

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	64,092,709 - 64,120,130 (-)	Ensembl
mRatBN7.2 Ensembl	5	59,305,741 - 59,343,348 (-)	Ensembl
Rnor_6.0 Ensembl	5	60,591,357 - 60,658,564 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093027

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	60,596,016 - 60,596,455 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093087 ⟹ ENSRNOP00000076069

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	60,594,532 - 60,636,529 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093103 ⟹ ENSRNOP00000076020

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	64,092,709 - 64,139,008 (-)	Ensembl
mRatBN7.2 Ensembl	5	59,297,045 - 59,343,348 (-)	Ensembl
Rnor_6.0 Ensembl	5	60,591,023 - 60,655,985 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093115

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	60,599,905 - 60,606,474 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000121451 ⟹ ENSRNOP00000103140

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	64,092,709 - 64,160,923 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000157871 ⟹ ENSRNOP00000112110

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	64,092,709 - 64,160,911 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000171929 ⟹ ENSRNOP00000108152

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	64,092,709 - 64,139,008 (-)	Ensembl

RefSeq Acc Id:

NM_001427214 ⟹ NP_001414143

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	64,092,709 - 64,139,008 (-)	NCBI

RefSeq Acc Id:

XM_006238142 ⟹ XP_006238204

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	64,092,709 - 64,139,054 (-)	NCBI
mRatBN7.2	5	59,297,016 - 59,324,020 (-)	NCBI
Rnor_6.0	5	60,589,881 - 60,616,867 (-)	NCBI
Rnor_5.0	5	65,098,937 - 65,145,415 (-)	NCBI

Sequence:

show sequence

CTCTCTGTTCCGCAGGAAGAAGGAGCGACGTACCTTGAGTGTTGGGCCAGGCCATGAGTTTGAC
AGCTTGGGCAGTGCCTTAGCCATGGCCAGCCTCTATGATCGAATCGTGCTTTTCCCAGACCACA
TCAGGTCACATCCAGTTTGACAACTGCAACTTTGAGAATGGACACATCCAGGTCCATGGCCCAG
GTACCTGCCAAGTGAAATTTTGTACCTTCAAAAATACCCATGTCTTTTTGCACAACGTGCCCTT
ATGTATGTTGGAAAACTGTGAATTTGTGGGCAGCGAAAACAACTCTGTGACCGTTGAGGGTCAC
CCGTCAGCCGACAAGAACTGGGCCTATAAGTACCTGCTGGGCCTTATCAAGGCCTCTCCCATCT
TCCTCCCTGCAGAGGACAACGACTTTTTAATGTCCTTGGACTTAGAGAGCCAGGACCAGGCCTG
GAGCCCAAGGACCTGTGACATTGTCATCGAGGGCAGCCAGAGTCCTACAAGTCCAGTCTCTAGC
TCTCCAAAGCCAGGCTCCAAGGAGGGAGAGGTGGGCAGCGATGGGGAGAGAGTGGCCCAGACTC
CAGACAGCAGTGACGGCGGCCTGAGCCCCAGCGGTGAGGATGAGGATGATGAGCAGCTCACCTA
CAGACTGTCCTACCAGGTGCAGGGCCCCCGCCCTGTTCTGGGCGGCTCCTTTCTGGGCCCTCCC
CTACCTGGAGCATCCATTCAGCTCCCCAGCTGTCTAGTTCTGAACTCACTGCACCAGGAGCTGC
AGAAAGACAAGGAAGCCATGGCGCTAGCCAGCTCCGTGCAGGGCTGCCTTATCCGCAAGTGCCT
CTTCCGGGACGGGAAGGGCGGTGTCTTCGTCTGCTCTTATGGCCGCGCCAAGATGGAAGGAAAC
GTCTTTCGGAACCTGACTTATGCAGTGCGATGTATACACAATAGCAAGATCGTCATGCTCAGGA
ATGATATTTACCGCTGCCGGGCATCAGGCATCTTTCTTCGATTGGAGGGCGGAGGCTTGATCGC
TGGCAACAATATTTACCACAATGCAGAGGCTGGCGTGGACATTCGGAAGAAATCCAACCCACTC
ATCCTGTGTAACCAGATCCACCACGGTCTTCGATCTGGCATTGTTGTCCTTGGCAATGGGAAAG
GTGTCATCAGGAACAACCAAATCTTTTCTAATAAGGAGGCTGGCATTTATATCCTGTACCACGG
AAATCCGATTGTGAGCGGAAACCACATCTTCAAGGGGCGTGCAGCTGGCATAGCAGTGAACGAG
AATGGCAAAGGCCTCATCACAGAAAACGTCATCCGCGAGAACCAGTGGGGAGGTGTAGACATCC
GCCGAGGCGGCGTCCCGATCCTCAGGAGCAACCTCATCTGCTTTGGCTACTCAGATGGCGTGGT
GGTGGGGGATGAAGGCAGAGGACTGATAGAAGGGAATACCATCTATGCTAACAAAGGATGTGGC
GTGTGGATGATGTCCTCCAGCCTGCCCCATGTCTCCAGCAACCATGTGAGCTACAACGGCCTGT
ATGGGGTGGCAGTGTTCAGCCAGAAAGACGGTGAGTTCCCTGGGGGCCACGGGGCTCAGGAGAA
CTTCAGTGAGGACGGGGACGCCATCCTCTGGGAGACGGAGCTGGAGAAGGAGGATGACCCACTG
CGCCGGCCCGTCACCGTAGCTCTCGTGGAGTCCAACAGTATTAATCACAATGGAGCATCAGGAA
TCTTTGTCCAGAGCAGCGAGGCACTTCAGGTCACCGCCAATGTGATCCATGCCAATGGGGACAG
AGGCGTCACCATTGTTCAGAGCAGCCAGCTCACACGAGTGGCTAACAACAGCATCTCCTGCAAT
CGCCAGAGTGGGGTCAAGGTGGAATTTCAATGCAAGGTGGAGCTCCGGGGCAATGGTATCTATG
ACAACAGAGGCCATGGCATCATTACTAAGGGCGATGGTACCGCTGTTGTGGAAAATGACATCAT
CGGCAACCGCGGCAGTGGACTGCAGTTGCTGCCCAGGTCTGACACTAAGGTACTAAAGAACCGG
ATCCACTCCTTCCGGGCCTATGGCATTGCAGTGCGGGGCCGTGTTAAGGCCCTGGTACAGGAGA
ACATCATCTTCCAGGGCAAGACCAACAAGACCATCTTCCAGCAGATCACAAACAACCGAGAGTG
CATCATGCAAAACAACAAGTTCCTTGTCTTCAAGAAGAAGTCTGACACCTGGCGCCTGGTGAAC
CCACCAGCACGGCCCCACCTGGAAAACTCACTCCGGGGCTCCTCTGCAGCCCACAGTGGGCACA
AGGTGGCAGCCATGGCAACCAGGATCACAGCCCGTGTGGAAGGTGGCTATCACAGCAACCGTAG
CATCTTCTGTACCATCCTGTAAGCGAGAAGGCCTGCCTCGGGCCCAGGCCCCGGACGGTGCAGA
GAGCTGCAGGCTGACTCCTGAGGTGGAAGTTAAGCCTGGGAAGTCTCCCAGACCCACCCCCATC
TTACAAACCACCACTCCTGAAGTGGGCCCTCGGCCTCCTGGGGCCTAAGAACGAGGAGTTACCT
CTAGAACCCTTAGCTCCAAAACCTTGGCAGGAAGGATCTTGGGACATTTCCCCAGGTGCAGTTG
GAGTGTCTCCAGTCACTCCAGTGGCACTCAGAGGTTATGAAGAGCTGCGGAGACTTAAACAGTA
CACGCAGCTTTTAGGTCAGTTGTTCCAAGCTACAGAAGACCTCTCACTTTACACAGACCAAGCT
GACTCTTCTCAGGGAAGAGAACGCTTACTTCTGACCAGGAAGTAGCTGTGGTGAGGTGGACACA
GCTACCCCTTTCCTGAACCTTGACTCTCTGGGTCCCTCTTGGGCCTATGCCAGCCTCCCAGCCG
CCCCTGGGAGCTGCAGTGTTTATTAAACAGCTCTCCTAGACTAGCAGCGCATGGTCCTGTGAGC
AAGGAAGGGCTTGGGACAGGAGTTCTTCCTGAAAGCTGCCTAGGAATGACAGGGGACATGTTAC
AAATAAGAGGGCAGGGGCTGCCTTCAGTGTGTGGGCAGGGGCTGGGCTGGGCCCCCTAGGATGA
ACAAAGTTACTGTCCTCAAGGGGTACCCCAAGTTCAGAGCGTTAGCTTAGCACCTGTCACAGGA
TTCTGACTGTGTGCACACATACATTCCAGCTCCCCTAGAGTCCAGCCTGTCTAGACAGACCCCT
GCCTCACCCCGACGTGTCCATGTCCTCATGGGTGACCAGCTGCCTTGACCAGCCCTTCCGTATT
CCCCACTCTGTGCCTTGGCTTGAGCTTGTTTTTCCCCCTGGCATGGCCCTCCCCAGCTAACTCC
ATCTGCAGATCCCACCCTTTACTCGAGGGTGACTTTAGCTCGACACTGCCGTCTCCATGTGACT
CTCCCCTTGCTCAGGTGATCGTGTCGCCCAGCACCCTCAGCCTTGCCTGCCCTCCTGCTCCTCA
GGACACTGAGCACTTTCTGCCTTGCTTTGGAACTCTGGGTCCATACCCGTCCTGCCCGTCCGCC
TGTGAACTCTCTAAAGGCAGAGCCACCTGTCTGTCCTTTTGTCCCAGCCCAGAGCCAGAGTTGA
GTTAGTGGCTGAAGTGATGAGAGGTCCAGCTCCCAAAGGGCTTCACCAGACGGCACTGACGGTG
GCGAGCTTTGCGAGCCAGGCTGAGGAAGGGATCTGCATGCAGGGCCAGCTCTGCCTGACGACCC
CTTTCCCACGTGGCCTCCACTGCAGGGCCCTCACCAGCCTTTGGGGTCACTGTCCCACACTGGG
CCCTGTCCCATGCTGGTTCTGTGGAGCCCTAGGTGCTGCTGTGTGGGTGGGTGGGAGGGGGAGC
TCTGACTTCTCCCTAAGCACTCTGGGAAGAACACTGGCCTTTCCCATGTGTAGCACTGTCCACT
GCACTTGTCTGGTGGCCCCAATGTGAGTCGCTGTATAAAAATGCTGCCTTTGTTATTTTGTAAG
AAATGACTTTTCTGTGAACCAAGTACTCACGAAATCTCAGTAACCAAAATAAAGTTCTATATTT
TAAAGGAGGTGCCTCCAGGGCCTCAGCTTGGTC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001414143	(Get FASTA)	NCBI Sequence Viewer
	XP_006238204	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98804	(Get FASTA)	NCBI Sequence Viewer
	EDL98805	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016875.8
	ENSRNOP00000076020
	ENSRNOP00000076020.1
	ENSRNOP00000103140.1
	ENSRNOP00000108152.1
	ENSRNOP00000112110.1

RefSeq Acc Id:

XP_006238204 ⟸ XM_006238142

- Peptide Label:

isoform X1

- Sequence:

show sequence

MIESCFSQTTSGHIQFDNCNFENGHIQVHGPGTCQVKFCTFKNTHVFLHNVPLCMLENCEFVGS
ENNSVTVEGHPSADKNWAYKYLLGLIKASPIFLPAEDNDFLMSLDLESQDQAWSPRTCDIVIEG
SQSPTSPVSSSPKPGSKEGEVGSDGERVAQTPDSSDGGLSPSGEDEDDEQLTYRLSYQVQGPRP
VLGGSFLGPPLPGASIQLPSCLVLNSLHQELQKDKEAMALASSVQGCLIRKCLFRDGKGGVFVC
SYGRAKMEGNVFRNLTYAVRCIHNSKIVMLRNDIYRCRASGIFLRLEGGGLIAGNNIYHNAEAG
VDIRKKSNPLILCNQIHHGLRSGIVVLGNGKGVIRNNQIFSNKEAGIYILYHGNPIVSGNHIFK
GRAAGIAVNENGKGLITENVIRENQWGGVDIRRGGVPILRSNLICFGYSDGVVVGDEGRGLIEG
NTIYANKGCGVWMMSSSLPHVSSNHVSYNGLYGVAVFSQKDGEFPGGHGAQENFSEDGDAILWE
TELEKEDDPLRRPVTVALVESNSINHNGASGIFVQSSEALQVTANVIHANGDRGVTIVQSSQLT
RVANNSISCNRQSGVKVEFQCKVELRGNGIYDNRGHGIITKGDGTAVVENDIIGNRGSGLQLLP
RSDTKVLKNRIHSFRAYGIAVRGRVKALVQENIIFQGKTNKTIFQQITNNRECIMQNNKFLVFK
KKSDTWRLVNPPARPHLENSLRGSSAAHSGHKVAAMATRITARVEGGYHSNRSIFCTIL

hide sequence

Ensembl Acc Id:

ENSRNOP00000016875 ⟸ ENSRNOT00000016875

Ensembl Acc Id:

ENSRNOP00000076020 ⟸ ENSRNOT00000093103

Ensembl Acc Id:

ENSRNOP00000076069 ⟸ ENSRNOT00000093087

RefSeq Acc Id:	NP_001414143 ⟸ NM_001427214
- UniProtKB:	A0A1B0GWU1 (UniProtKB/TrEMBL), A6IJ84 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000112110 ⟸ ENSRNOT00000157871

Ensembl Acc Id:

ENSRNOP00000103140 ⟸ ENSRNOT00000121451

Ensembl Acc Id:

ENSRNOP00000108152 ⟸ ENSRNOT00000171929

Protein Domains

F-box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZVN3-F1-model_v2	AlphaFold	D3ZVN3	1-970	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693698

Promoter ID:

EPDNEW_R4221

Type:

single initiation site

Name:

Fbxo10_1

Description:

F-box protein 10

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R4223

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	60,636,489 - 60,636,549	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305465	AgrOrtholog
BioCyc Gene	G2FUF-41458	BioCyc
Ensembl Genes	ENSRNOG00000012634	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016875.8	UniProtKB/TrEMBL
	ENSRNOT00000093103	ENTREZGENE
	ENSRNOT00000093103.3	UniProtKB/TrEMBL
	ENSRNOT00000121451.1	UniProtKB/TrEMBL
	ENSRNOT00000157871.1	UniProtKB/TrEMBL
	ENSRNOT00000171929.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1280.50	UniProtKB/TrEMBL
	2.160.20.10	UniProtKB/TrEMBL
InterPro	Beta_helix	UniProtKB/TrEMBL
	Carb-bd_sugar_hydrolysis-dom	UniProtKB/TrEMBL
	F-box_dom_cyclin-like	UniProtKB/TrEMBL
	F-box_dom_like	UniProtKB/TrEMBL
	NosD_dom	UniProtKB/TrEMBL
	Para_beta_helix_rpt-2	UniProtKB/TrEMBL
	PbH1	UniProtKB/TrEMBL
	Pectin_lyas_fold	UniProtKB/TrEMBL
	Pectin_lyase_fold/virulence	UniProtKB/TrEMBL
	SCF-Subunits/Alg-Epimerases	UniProtKB/TrEMBL
NCBI Gene	362511	ENTREZGENE
PANTHER	F-BOX ONLY PROTEIN	UniProtKB/TrEMBL
	F-BOX ONLY PROTEIN 10	UniProtKB/TrEMBL
Pfam	Beta_helix	UniProtKB/TrEMBL
	F-box-like	UniProtKB/TrEMBL
	NosD	UniProtKB/TrEMBL
PhenoGen	Fbxo10	PhenoGen
PROSITE	FBOX	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000012634	RatGTEx
SMART	CASH	UniProtKB/TrEMBL
	FBOX	UniProtKB/TrEMBL
	PbH1	UniProtKB/TrEMBL
Superfamily-SCOP	F-box_dom_Skp2-like	UniProtKB/TrEMBL
	Pectin_lyas_like	UniProtKB/TrEMBL
UniProt	A0A1B0GWU1	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LC34_RAT	UniProtKB/TrEMBL
	A0ABK0LI33_RAT	UniProtKB/TrEMBL
	A0ABK0LMG6_RAT	UniProtKB/TrEMBL
	A6IJ84	ENTREZGENE, UniProtKB/TrEMBL
	D3ZVN3_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Fbxo10	F-box protein 10	Fbxo10_predicted	F-box only protein 10 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Fbxo10_predicted	F-box only protein 10 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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