Trappc14 (trafficking protein particle complex subunit 14) - Rat Genome Database

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Gene: Trappc14 (trafficking protein particle complex subunit 14) Rattus norvegicus
Analyze
Symbol: Trappc14
Name: trafficking protein particle complex subunit 14
RGD ID: 1305455
Description: Predicted to enable alpha-tubulin binding activity. Predicted to be involved in cilium assembly and regulation of cell population proliferation. Predicted to be located in several cellular components, including microtubule cytoskeleton; midbody; and plasma membrane. Predicted to be part of TRAPPII protein complex. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly. Orthologous to human TRAPPC14 (trafficking protein particle complex subunit 14); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC288545; LOC288545; Map11; MGC109103; microtubule associated protein 11; microtubule-associated protein 11; RGD1305455; similar to hypothetical protein FLJ10925; trafficking protein particle complex 14; uncharacterized protein C7orf43 homolog; uncharacterized protein LOC288545
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,376,361 - 22,380,706 (-)NCBIGRCr8
mRatBN7.21217,262,748 - 17,267,093 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1217,262,750 - 17,267,084 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1218,230,277 - 18,234,567 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,854,000 - 18,858,290 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,907,412 - 17,911,702 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,577,895 - 19,582,185 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,573,893 - 19,582,208 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01221,634,744 - 21,639,034 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41217,843,341 - 17,847,631 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11217,833,446 - 17,838,394 (-)NCBI
Celera1219,187,407 - 19,191,698 (-)NCBICelera
Cytogenetic Map12q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:30715179  


Genomics

Comparative Map Data
Trappc14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,376,361 - 22,380,706 (-)NCBIGRCr8
mRatBN7.21217,262,748 - 17,267,093 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1217,262,750 - 17,267,084 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1218,230,277 - 18,234,567 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,854,000 - 18,858,290 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,907,412 - 17,911,702 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,577,895 - 19,582,185 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,573,893 - 19,582,208 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01221,634,744 - 21,639,034 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41217,843,341 - 17,847,631 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11217,833,446 - 17,838,394 (-)NCBI
Celera1219,187,407 - 19,191,698 (-)NCBICelera
Cytogenetic Map12q11NCBI
TRAPPC14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,154,423 - 100,158,723 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,154,420 - 100,158,723 (-)EnsemblGRCh38hg38GRCh38
GRCh37799,752,046 - 99,756,346 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,589,979 - 99,594,238 (-)NCBINCBI36Build 36hg18NCBI36
Celera794,487,394 - 94,491,646 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,387,014 - 94,391,191 (-)NCBIHuRef
CHM1_1799,682,170 - 99,686,429 (-)NCBICHM1_1
T2T-CHM13v2.07101,394,216 - 101,398,516 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,112,129 - 99,116,387 (-)NCBI
Trappc14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,257,920 - 138,262,323 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,257,918 - 138,262,295 (-)EnsemblGRCm39 Ensembl
GRCm385138,259,658 - 138,264,061 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,259,656 - 138,264,033 (-)EnsemblGRCm38mm10GRCm38
MGSCv375138,700,886 - 138,705,280 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365138,489,446 - 138,492,973 (-)NCBIMGSCv36mm8
Celera5135,242,510 - 135,246,904 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map577.0NCBI
Trappc14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955573645,587 - 649,363 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955573644,907 - 649,363 (+)NCBIChiLan1.0ChiLan1.0
TRAPPC14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26118,073,355 - 118,077,663 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17166,337,987 - 166,342,295 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0792,189,179 - 92,193,483 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17105,621,902 - 105,626,216 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7105,622,497 - 105,625,978 (-)Ensemblpanpan1.1panPan2
TRAPPC14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,368,006 - 9,372,493 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl69,368,029 - 9,373,043 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,071,992 - 11,076,486 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.069,301,680 - 9,306,164 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl69,301,703 - 9,389,155 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.169,154,164 - 9,158,662 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,133,226 - 9,137,704 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.069,314,289 - 9,318,777 (+)NCBIUU_Cfam_GSD_1.0
Trappc14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,620,088 - 133,624,561 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936543412,524 - 416,445 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936543411,972 - 416,442 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAPPC14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,158,070 - 8,162,425 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,158,062 - 8,162,738 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.237,359,744 - 7,364,018 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRAPPC14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,911,287 - 12,915,935 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2812,911,531 - 12,915,321 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660703,364,326 - 3,368,969 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trappc14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474016,748,281 - 16,756,542 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474016,748,276 - 16,752,580 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trappc14
27 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:398
Count of miRNA genes:202
Interacting mature miRNAs:241
Transcripts:ENSRNOT00000060020, ENSRNOT00000072044
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)121502518320794014Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121300829619212979Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12136247923Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat

Markers in Region
AW533576  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21217,268,016 - 17,268,171 (+)MAPPERmRatBN7.2
Rnor_6.01219,583,164 - 19,583,318NCBIRnor6.0
Rnor_5.01221,640,013 - 21,640,167UniSTSRnor5.0
RGSC_v3.41217,848,610 - 17,848,764UniSTSRGSC3.4
Celera1219,192,677 - 19,192,831UniSTS
RH 3.4 Map12253.3UniSTS
Cytogenetic Map12q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000060020   ⟹   ENSRNOP00000056771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1217,262,750 - 17,267,038 (-)Ensembl
Rnor_6.0 Ensembl1219,577,897 - 19,582,185 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085853   ⟹   ENSRNOP00000075560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1217,262,750 - 17,267,084 (-)Ensembl
Rnor_6.0 Ensembl1219,573,893 - 19,582,208 (-)Ensembl
RefSeq Acc Id: NM_001024969   ⟹   NP_001020140
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81222,376,361 - 22,380,651 (-)NCBI
mRatBN7.21217,262,748 - 17,267,038 (-)NCBI
Rnor_6.01219,577,895 - 19,582,185 (-)NCBI
Rnor_5.01221,634,744 - 21,639,034 (-)NCBI
RGSC_v3.41217,843,341 - 17,847,631 (-)RGD
Celera1219,187,407 - 19,191,698 (-)RGD
Sequence:
RefSeq Acc Id: XR_005491612
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81222,377,270 - 22,380,706 (-)NCBI
mRatBN7.21217,263,653 - 17,267,093 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001020140 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91263 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000056771.3
  ENSRNOP00000075560.1
RefSeq Acc Id: NP_001020140   ⟸   NM_001024969
- UniProtKB: A0A0G2KAX2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075560   ⟸   ENSRNOT00000085853
Ensembl Acc Id: ENSRNOP00000056771   ⟸   ENSRNOT00000060020

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2KAX2-F1-model_v2 AlphaFold A0A0G2KAX2 1-580 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698503
Promoter ID:EPDNEW_R9024
Type:multiple initiation site
Name:RGD1305455_1
Description:similar to hypothetical protein FLJ10925
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9025  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01219,582,115 - 19,582,175EPDNEW
RGD ID:13698500
Promoter ID:EPDNEW_R9025
Type:single initiation site
Name:RGD1305455_2
Description:similar to hypothetical protein FLJ10925
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9024  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01219,582,231 - 19,582,291EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305455 AgrOrtholog
BioCyc Gene G2FUF-19776 BioCyc
Ensembl Genes ENSRNOG00000039214 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000060020.6 UniProtKB/TrEMBL
  ENSRNOT00000085853.2 UniProtKB/TrEMBL
InterPro DUF4707 UniProtKB/TrEMBL
KEGG Report rno:288545 UniProtKB/TrEMBL
NCBI Gene 288545 ENTREZGENE
PANTHER PTHR16096 UniProtKB/TrEMBL
  TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 14 UniProtKB/TrEMBL
Pfam DUF4707 UniProtKB/TrEMBL
PhenoGen Trappc14 PhenoGen
RatGTEx ENSRNOG00000039214 RatGTEx
UniProt A0A0G2KAX2 ENTREZGENE, UniProtKB/TrEMBL
  Q5BK00_RAT UniProtKB/TrEMBL
UniProt Secondary F1LQD9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-18 Trappc14  trafficking protein particle complex subunit 14  Trappc14  trafficking protein particle complex 14  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2020-10-12 Trappc14  trafficking protein particle complex 14  Map11  microtubule associated protein 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2019-08-09 Map11  microtubule associated protein 11  RGD1305455  similar to hypothetical protein FLJ10925  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1305455  similar to hypothetical protein FLJ10925  RGD1305455_predicted  similar to hypothetical protein FLJ10925 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1305455_predicted  similar to hypothetical protein FLJ10925 (predicted)  LOC288545_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC288545_predicted  similar to hypothetical protein FLJ10925 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL