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Gene: Cdh20 (cadherin 20) Rattus norvegicus

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Symbol:

Cdh20

Name:

cadherin 20

RGD ID:

1305438

Description:

Predicted to enable beta-catenin binding activity and cadherin binding activity. Predicted to be involved in several processes, including calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell-cell adhesion mediated by cadherin; and cell-cell junction organization. Predicted to be located in plasma membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Orthologous to human CDH20 (cadherin 20); INTERACTS WITH bisphenol A; cadmium dichloride; copper atom.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Cad20; cadherin-20; LOC363948

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDH20 (cadherin 20)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cdh20 (cadherin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdh20 (cadherin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDH20 (cadherin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDH20 (cadherin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdh20 (cadherin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDH20 (cadherin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDH20 (cadherin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdh20 (cadherin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cdh20 (cadherin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TMEM132C (transmembrane protein 132C)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CDH20 (cadherin 20)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cdh20 (cadherin 20)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cdh20	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	cdh20	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	shg	Alliance	DIOPT (Ensembl Compara\|InParanoid)
Drosophila melanogaster (fruit fly):	shg	Alliance	DIOPT (Ensembl Compara\|InParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	21,252,272 - 21,583,526 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	21,515,123 - 21,584,349 (+)	Ensembl				GRCr8
mRatBN7.2	13	20,737,640 - 21,069,746 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	20,738,081 - 21,068,676 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	21,347,754 - 21,410,721 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	22,632,507 - 22,695,474 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	21,316,387 - 21,379,354 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	24,630,298 - 24,914,463 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	24,823,488 - 24,913,884 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	30,018,338 - 30,085,298 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	10,970,187 - 11,038,947 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	20,896,704 - 20,961,175 (+)	NCBI		Celera
RGSC_v3.1	13	10,970,186 - 11,038,946 (+)	NCBI
Cytogenetic Map	13	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

syndactyly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (EXP)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

dioxygen (EXP)

epoxiconazole (ISO)

ethanol (ISO)

ethylparaben (ISO)

fulvestrant (ISO)

iron dichloride (ISO)

methapyrilene (ISO)

paracetamol (ISO)

Tetrachlorobisphenol A (ISO)

titanium dioxide (ISO)

triclosan (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adherens junction organization (IBA)

calcium-dependent cell-cell adhesion (IBA)

cell adhesion (IEA)

cell migration (IBA)

cell morphogenesis (IBA)

cell-cell adhesion (IEA)

cell-cell adhesion mediated by cadherin (IBA)

cell-cell junction assembly (IBA)

homophilic cell-cell adhesion (IEA)

Cellular Component

adherens junction (IBA)

catenin complex (IBA)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

beta-catenin binding (IBA)

cadherin binding (IBA)

calcium ion binding (IEA)

metal ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:18801203	PMID:34240415

Genomics

Comparative Map Data

Cdh20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	21,252,272 - 21,583,526 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	21,515,123 - 21,584,349 (+)	Ensembl				GRCr8
mRatBN7.2	13	20,737,640 - 21,069,746 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	20,738,081 - 21,068,676 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	21,347,754 - 21,410,721 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	22,632,507 - 22,695,474 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	21,316,387 - 21,379,354 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	24,630,298 - 24,914,463 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	24,823,488 - 24,913,884 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	30,018,338 - 30,085,298 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	10,970,187 - 11,038,947 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	20,896,704 - 20,961,175 (+)	NCBI		Celera
RGSC_v3.1	13	10,970,186 - 11,038,946 (+)	NCBI
Cytogenetic Map	13	p11	NCBI

CDH20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	61,333,430 - 61,555,779 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	61,333,430 - 61,555,779 (+)	Ensembl			hg38	GRCh38
GRCh37	18	59,000,663 - 59,223,012 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	57,308,755 - 57,373,345 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	18	57,308,754 - 57,373,345	NCBI
Celera	18	55,875,642 - 55,940,232 (+)	NCBI		Celera
Cytogenetic Map	18	q21.33	NCBI
HuRef	18	55,867,814 - 55,931,773 (+)	NCBI		HuRef
CHM1_1	18	59,153,227 - 59,217,972 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	18	61,536,681 - 61,759,001 (+)	NCBI		T2T-CHM13v2.0

Cdh20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	104,696,245 - 104,923,202 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	104,696,254 - 104,923,206 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	104,768,340 - 104,995,481 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	104,768,529 - 104,995,481 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	106,665,396 - 106,892,058 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	106,596,366 - 106,823,028 (+)	NCBI		MGSCv36	mm8
Celera	1	107,630,046 - 107,857,575 (+)	NCBI		Celera
Cytogenetic Map	1	E2.1	NCBI
cM Map	1	49.42	NCBI

Cdh20
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	45,340,223 - 45,543,256 (+)	Ensembl
ChiLan1.0	NW_004955402	45,340,824 - 45,543,088 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDH20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	17	78,858,063 - 79,080,155 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	18	64,550,654 - 64,772,871 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	54,706,558 - 54,928,744 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	58,028,849 - 58,250,790 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	58,028,533 - 58,250,790 (+)	Ensembl			panPan2	panpan1.1

CDH20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	15,172,681 - 15,388,327 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	15,183,350 - 15,234,880 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	16,150,908 - 16,202,432 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	15,054,279 - 15,259,002 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	15,054,288 - 15,106,347 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	15,079,685 - 15,131,164 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	15,014,314 - 15,066,051 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	15,260,942 - 15,312,507 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cdh20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	28,387,140 - 28,587,898 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936497	3,625,601 - 3,699,564 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936497	3,626,181 - 3,827,024 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDH20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	159,817,159 - 159,917,145 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	159,817,091 - 160,024,985 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	177,316,697 - 177,367,332 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDH20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	18,207,407 - 18,426,620 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	18,207,415 - 18,269,551 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666060	7,259,763 - 7,481,337 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdh20
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624792	6,902,931 - 7,159,514 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624792	6,903,439 - 7,158,708 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cdh20
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	90,758,174 - 91,015,616 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cdh20
2203 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	54
Count of miRNA genes:	48
Interacting mature miRNAs:	52
Transcripts:	ENSRNOT00000019907
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2317027	Aia22	Adjuvant induced arthritis QTL 22	2.29		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	13	1	34785618	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
2317034	Aia9	Adjuvant induced arthritis QTL 9	4.62		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12285517	34884386	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	3088755	48088755	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	12448421	47969993	Rat
631672	Iddm12	Insulin dependent diabetes mellitus QTL 12	2.2	0.0032	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	6002008	37088115	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
2303031	Bp326	Blood pressure QTL 326			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	12285517	23516549	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2303030	Bp327	Blood pressure QTL 327			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	43736554	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
2317044	Aia23	Adjuvant induced arthritis QTL 23	2.3		joint integrity trait (VT:0010548)	ankle joint diameter (CMO:0002148)	13	12285517	34884386	Rat
61339	Bp24	Blood pressure QTL 24		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	6002008	47359539	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
738036	Lnnr4	Liver neoplastic nodule remodeling QTL 4	3.64		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	1	34785618	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
12	11	64	143	46	51	25	11	25	6	218	99	7	130	74	90	26	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB121033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019907 ⟹ ENSRNOP00000019907

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	21,515,123 - 21,584,349 (+)	Ensembl
mRatBN7.2 Ensembl	13	20,738,081 - 21,068,676 (+)	Ensembl
Rnor_6.0 Ensembl	13	24,823,488 - 24,913,884 (+)	Ensembl

RefSeq Acc Id:

NM_001012748 ⟹ NP_001012766

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	21,515,267 - 21,583,282 (+)	NCBI
mRatBN7.2	13	21,000,659 - 21,068,676 (+)	NCBI
Rnor_6.0	13	24,846,480 - 24,913,440 (+)	NCBI
Rnor_5.0	13	30,018,338 - 30,085,298 (+)	NCBI
RGSC_v3.4	13	10,970,187 - 11,038,947 (+)	RGD
Celera	13	20,896,704 - 20,961,175 (+)	RGD

Sequence:

show sequence

ATGTGGACTACAGGTAGAATGAGCAATGCAAAGAGCTGGCTTGGACTTGGCACATCCTTGTACT
TCTGGGCACTGATGGACCTTGCGACCACCGTTCTGTCCAGCACTCCGATGCCGGAAGTCGAGTT
AGATACACTCTTCTCAGGAAAGCCACAGTCACATCAGCGGAGCAGGAGGAGCTGGGTTTGGAAC
CAATTTTTTGTCCTGGAAGAGTACACTGGGACTGACCCTCTGTATGTCGGCAAGCTTCATTCAG
ACATGGACAGGGGAGATGGATCCATCAAATACATCCTTTCAGGAGAAGGAGCAGGGATCGTGTT
TACCATTGATGACACCACTGGAGACATCCATGCCATTCAGAGGCTTGATCGAGAGGAAAGAGCC
CAATATACTCTAAGAGCTCAAGCCCTAGACAGGAGAACAGGCCGGCCAATGGAGCCAGAATCAG
AGTTTATTATCAAAATTCAAGATATCAATGACAACGAGCCCAAGTTCCTGGATGGACCTTACGT
TGCCACTGTGCCAGAAATGTCACCAGTAGGTACCTCTGTTATCCAAGTGACAGCCACAGATGCT
GATGACCCAACCTATGGCAACAGTGCCCGAGTTGTGTACAGCATTCTCCAGGGCCAGCCATATT
TTTCTGTGGACTCCAAAACAGGTATAATCAGAACAGCGCTCATGAACATGGACAGAGAAGCCAA
GGAATACTATGAAGTGATTATCCAAGCCAAGGATATGGGGGGTCAACTTGGAGGATTGGCTGGG
ACCACAACAGTCAACATCACACTCTCAGATGTCAATGATAACCCACCCCGGTTTCCACAGAAAC
ATTATCAGATGAGTGTGCTGGAGTCCGCTCCTGTTAGCTCGACTGTGGGGAGAGTGTTTGCCAA
AGACCTGGACGAAGGCATCAATGCAGAAATGAAGTACACCATTGTGGATGGAGATGGTGCAGAC
GCTTTTGATATCAATACAGACCCGAACTTCCAAGTTGGCATCATAACTGTGAAGAAGCCTTTGA
GTTTTGAAAGCAAGAAAAGCTACACCCTGAAGGTGGAAGGATCCAATCCTCACGTAGAGATGCG
TTTTCTGAACCTTGGCCCATTTCAGGACACAACAACAGTGCACATCATTGTGGAGGATGTGGAC
GAGCCCCCTGTGTTTGAGCCCCGCTTTTATTTTGTGGAGGTGCCAGAGGATGTGACAATTGGAA
CAACCATACAGATCATTTCTGCCAAGGACCCAGACATGACCAACAACTCAATCAGATACTCCAT
TGACAGAGGCAGCGACCCTGGAAGATTTTTCTATGTTGACATTACAACAGGTGCTCTAATGACT
GCAAGACCACTAGACAGAGAAGAGTTTTCTTGGCATAATATAACTGTTCTTGCTATGGAAATGA
ACAACCCCTCCCAAGTGGGAAGTGTTGCTGCCACAATCAAAGTCCTAGATGTGAATGACAATGC
TCCAGAGTTTCCCAGATTCTATGAAGCTTTCATCTGTGAAAATGCCAAAGCGGGACAGCTGATC
CAGACAGTGAGTGCTGTGGATCAAGATGACCCTCACAATGGTCAACATTTCTACTACAGTTTGG
CTCCTGAGGCTGCTAACAACCCCAACTTCACTGTCAGGGACAACCAAGATAATACCGCTCGCAT
TCTGACCAGGAGGTCCGGCTTCCGACAGCAGGAGCAGAGCGTCTTCTACCTGCCCATCCTCATA
GCAGACAGCGGCCAGCCGGTCCTCAGCAGCACCGGCACACTTACCATTCAAGTGTGCAGCTGCA
GTGACGATGGCCACGTCATGTCCTGCAGCCCAGAGGCATATATGCTCCCAGTCAGTTTGAGTCG
GGGTGCCCTCATCGCCATCCTGGCCTGCGTCTTTGTTCTCTTAGTATTGGTGCTGCTCATCCTG
TCCATGAGGCGCCACCGAAAACAACCCTACATCATCGACGACGACGAGAACATCCACGAGAACA
TTGTGCGCTATGACGACGAGGGGGGAGGCGAAGAGGACACAGAGGCCTTCGACATCGCCGCCAT
GTGGAACCCGCGCGAGGCGCAGGCGGGCGCCGCCCCGAAGACGCGGCAGGACATGCTCCCCGAG
ATCGAGAGCCTCTCCCGCTACGTGCCTCAGACGTGCGCGGTCAGCAGCACGGTCCACAGCTACG
TGCTGGCCAAGCTCTACGAGGCCGACATGGACCTGTGGGCCCCGCCCTTCGATTCCCTGCAGAC
CTACATGTTTGAGGGGGACGGCTCCGTGGCCGGCTCGCTCAGCTCGCTTCAGTCAGCCACCTCG
GACTCAGAGCAGAGCTTTGATTTCCTCACGGACTGGGGACCTCGCTTCCGGAAACTGGCAGAAC
TCTACGGGGCGTCGGAGGGGCCCTCGCCCTTGTGGTGACAGAAGCCCGGAGGCCAAGGTGCACC
CAAATCCAGACGTTCTCA

hide sequence

RefSeq Acc Id:

XM_017598871 ⟹ XP_017454360

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	21,252,272 - 21,583,526 (+)	NCBI
mRatBN7.2	13	20,737,640 - 21,069,746 (+)	NCBI
Rnor_6.0	13	24,630,298 - 24,914,463 (+)	NCBI

Sequence:

show sequence

GGTTTTTAAACTGCATTTAAAGAATTAACCCATTTTGCCCCTCTCTGGTCTAAACCACGGGGTG
CCAACCGGGACTTTAATTGCTTTCTTCTGGTGGGGTTCCAGACAGCTCCTCAGAAGGAAGGAGC
GCACATTCCTGGCACCAATTGGCTAATTCAATTTACTTCAACAGCATTAGCCTCTGTCAGAATA
TTCATGAGCAGGGGAACCAGGACCCGCGGTACAGGCAGGAGGCAGCCACTCGGGCTTGGAAAAG
CGCGAGGGAGGGGAAGAAGCGGACCGCGCGCCGGTCTTAGAGGACGGTGACCAGGAGGACCGGG
CAGCTCTTTTCACCCTCCTGGCAGAGAGCTGGGGGCGCCGCTGGCATCAGCGGATTTGCTGCTC
TTGTCATCAGCTCTTAACTCACAGTGATCACGCGGAGACTTTGGAAACATCCGAAGGCTGTAGA
GCTGTGACACTTTTGACTTGGGGGGAAGGGGGGTGGGGCGGGGGCAGAGAGGCGAGCTGAAGCG
AAGGGACTCGGCGGGACACCCGTTCGCCCAATGAGGAAGGCAGCGATGTGAGCTGGACACCCGC
CACGGCGGAGTCTCAACATCTCCGGAGAGTCGCCGGCTGTGCCAGGACTTCACCTTGACTTGAA
TGGAGACCTCCTTTGGGAAGCAATGAGTTTCCAATAACCTGTGGCGTGGCTTTTTTTAATCTGG
AAAATACTCAACCCCAGGGCTTGCCATTCTACTTGGCTTCTGAAACTCCTGCAAGCCGATGTGG
ACTACAGGTAGAATGAGCAATGCAAAGAGCTGGCTTGGACTTGGCACATCCTTGTACTTCTGGG
CACTGATGGACCTTGCGACCACCGTTCTGTCCAGCACTCCGATGCCGGAAGTCGAGTTAGATAC
ACTCTTCTCAGGAAAGCCACAGTCACATCAGCGGAGCAGGAGGAGCTGGGTTTGGAACCAATTT
TTTGTCCTGGAAGAGTACACTGGGACTGACCCTCTGTATGTCGGCAAGCTTCATTCAGACATGG
ACAGGGGAGATGGATCCATCAAATACATCCTTTCAGGAGAAGGAGCAGGGATCGTGTTTACCAT
TGATGACACCACTGGAGACATCCATGCCATTCAGAGGCTTGATCGAGAGGAAAGAGCCCAATAT
ACTCTAAGAGCTCAAGCCCTAGACAGGAGAACAGGCCGGCCAATGGAGCCAGAATCAGAGTTTA
TTATCAAAATTCAAGATATCAATGACAACGAGCCCAAGTTCCTGGATGGACCTTACGTTGCCAC
TGTGCCAGAAATGTCACCAGTAGGTACCTCTGTTATCCAAGTGACAGCCACAGATGCTGATGAC
CCAACCTATGGCAACAGTGCCCGAGTTGTGTACAGCATTCTCCAGGGCCAGCCATATTTTTCTG
TGGACTCCAAAACAGGTGTAATCAGAACAGCGCTCATGAACATGGACAGAGAAGCCAAGGAATA
CTATGAAGTGATTATCCAAGCCAAGGATATGGGGGGTCAACTTGGAGGATTGGCTGGGACCACA
ACAGTCAACATCACACTCTCAGATGTCAATGATAACCCACCCCGGTTTCCACAGAAACATTATC
AGATGAGTGTGCTGGAGTCCGCTCCTGTTAGCTCGACTGTGGGGAGAGTGTTTGCCAAAGACCT
GGACGAAGGCATCAATGCAGAAATGAAGTACACCATTGTGGATGGAGATGGTGCAGACGCTTTT
GATATCAATACAGACCCGAACTTCCAAGTTGGCATCATAACTGTGAAGAAGCCTTTGAGTTTTG
AAAGCAAGAAAAGCTACACCCTGAAGGTGGAAGGATCCAATCCTCACGTAGAGATGCGTTTTCT
GAACCTTGGCCCATTTCAGGACACAACAACAGTGCACATCAGTGTGGAGGATGTGGACGAGCCC
CCTGTGTTTGAGCCCGGCTTTTATTTTGTGGAGGTGCCAGAGGATGTGACAATTGGAACAACCA
TACAGATCATTTCTGCCAAGGACCCAGACGTGACCAACAACTCAATCAGATACTCCATTGACAG
AGGCAGCGACCCTGGAAGATTTTTCTATGTTGACATTACAACAGGTGCTCTAATGACTGCAAGA
CCACTAGACAGAGAAGAGTTTTCTTGGCATAATATAACTGTTCTTGCTATGGAAATGAACAACC
CCTCCCAAGTGGGAAGTGTTGCTGTCACAATCAAAGTCCTAGATGTGAATGACAATGCTCCAGA
GTTTCCCAGATTCTATGAAGCTTTCATCTGTGAAAATGCCAAAGCGGGACAGCTGATCCAGACA
GTGAGTGCTGTGGATCAAGATGACCCTCACAATGGTCAACATTTCTACTACAGTTTGGCTCCTG
AGGCTGCTAACAACCCCAACTTCACTGTCAGGGACAACCAAGATAATACCGCTCGCATTCTGAC
CAGGAGGTCCGGCTTCCGACAGCAGGAGCAGAGCGTCTTCTACCTGCCCATCCTCATAGCAGAC
AGCGGCCAGCCGGTCCTCAGCAGCACCGGCACACTTACCATTCAAGTGTGCAGCTGCAGTGACG
ATGGCCACGTCATGTCCTGCAGCCCAGAGGCATATATGCTCCCAGTCAGTTTGAGTCGGGGTGC
CCTCATCGCCATCCTGGCCTGCGTCTTTGTTCTCTTAGTATTGGTGCTGCTCATCCTGTCCATG
AGGCGCCACCGAAAACAACCCTACATCATCGACGACGACGAGAACATCCACGAGAACATTGTGC
GCTATGACGACGAGGGGGGAGGCGAAGAGGACACAGAGGCCTTCGACATCGCCGCCATGTGGAA
CCCGCGCGAGGCGCAGGCGGGCGCCGCCCCGAAGACGCGGCAGGACATGCTCCCCGAGATCGAG
AGCCTCTCCCGCTACGTGCCTCAGACGTGCGCGGTCAGCAGCACGGTCCACAGCTACGTGCTGG
CCAAGCTCTACGAGGCCGACATGGACCTGTGGGCCCCGCCCTTCGATTCCCTGCAGACCTACAT
GTTTGAGGGGGACGGCTCCGTGGCCGGCTCGCTCAGCTCGCTTCAGTCAGCCACCTCGGACTCA
GAGCAGAGCTTTGATTTCCTCACGGACTGGGGACCTCGCTTCCGGAAACTGGCAGAACTCTACG
GGGCGTCGGAGGGGCCCTCGCCCTTGTGGTGACAGAAGCCCGGAGGCCAAGGTGCACCCAAATC
CAGACGTTCTCAAACGCTGCTTCTCGTCCATGAGGCGCGGCCACCACAGGAGCAATATTGTGCT
GGACAGTGAGGATGGGAGTGAGTGGACCCAACAGAGCTCTCTCTGGATCAGCTTTACTTGGTTA
GACGAAATTAAATAATCAGAAGGAAACCCAGAAGAAGAGGGCAGAATCCCCAATTATCTTTTTA
ATTTGCTTTTTGACACTGTATTCACAGGTTTGAAGTATTAAAGCTTGGCTTTTTTGTTTGTTTA
TTTGTTTGTTTCTCTGTTTTTCCTATTCACCAAGGCCTTTGTCATTTTGCCACCAAGAAAAGGC
TCCAGTGTTAACCTACAGAGGTAGTAGGTGAAGGTCTGGAGGCAGAGAACAAGTCCTACTCCAG
AATCTATGTTATCTGTATTCCCCATTTCAGATTGTTTCTCTGGATCCTCAGATCTGCAGAAAAC
AACACGCGCGGGAGCGCACGCGTACACACACACACACACACACACACACACACACACACACACA
CACACACTACTGAAAAAAGTATTCCTCAGTGAAATCATCTTGCTTGTTCTAAGGTGGGTGGTAT
ACTATTTAACCCTTTCAACACAAGGTTTAGACTTTCTTGACCTTGCATGGGGAATTGTTGGGGA
GGGTGGGAGAAGGAAGAGACATTGACTTGTGTTCATGTTTAAGAGCTGAACCAAGAGTTGGCAT
TATAGCTGATCCAGCATCAGCTTTTACATGCCTTGGCAAAAGTCAGAAGGAAACCAGAAAAGCT
GCCTCTTTTGCACTGTAGATGTCTCTTCTGTGTGCCAAATGTGGAGACCAGATGCAACAAACGA
AAGCCAAATAAGAAGTATCTGATAAAAGCATGGGTCTGAGGGCTTTCCTAATCTGTATAAAGTC
AATCCAAGGGATGTTTACATACTGTAGATAACCTACTTGAACAAAGTCAGTATTATAGAGAAGA
ATGGATGTAAGAGTATTACCTGTAAAAGTTTTGTATATTTGTTAATAATTTTGTTAATAAATAT
GATGTACTACA

hide sequence

RefSeq Acc Id:

XM_017598872 ⟹ XP_017454361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	21,450,576 - 21,583,526 (+)	NCBI
mRatBN7.2	13	20,935,161 - 21,068,676 (+)	NCBI
Rnor_6.0	13	24,821,898 - 24,914,463 (+)	NCBI

Sequence:

show sequence

GCACAGCTGCACATTAATTCAACCAAATTAAACTGCTAGGATGAAATACCACCAGAATGCATTG
TAAAGTGTAATTTCACTGAAACAAGTATGTAACTTTGTTTAAAAAAAAAACCATCAAGTGCCCG
TCAAAGGGTGAAAGAAATATATTACATTATGATGAAAAAAAGGTCTTTTAGGAAAAGGCTGAAA
TAGCACTTGTTCAGAAATGGCATGTGTAGACTTCCAGCACAGGGAAGACGGTGACTTTTTCTTA
AGACTTGTCCTTGTTTTATGATCACAGCAGAAGGGAGACGTTTATAGATAAGGTCATGTCCAAG
GAATGAGTTCCTTTCTGGAGCCAGATGCCTTCATCTTTCCCACTTTCAACCATGTGCAGTAATC
ATTTTCTGTCTAGTTTACTTTCGTACCTTCTAAAAACACAAGTAACCCAGTTAGGTCTTGAACA
GACCCTAAATGACTTCTGAAAAACAAGTCCCTTGTTTTCAAGACACTGAAATGAACTGGGGTCC
GGGGTAGTTTTAAAATCTGTTCTCAGTTGCTTTTTTTTTTGGCCCTAATGGAAGCAGAGGAGAG
TACGGATTCAACAGCACACACTTTGCCATTATGAAGAATGACTTACTCAACAGCCGAATCATTA
GAAAATGGATGATCTCTCTGGCCTTACAGAACTCTATACACAGAAATAAAAATGAGATGAAAGT
TTCAGATATGCAGCATACAATGAGATTCTTGGGGAAAGTGAAGCACAGTCCCACTGAAATTAGT
CTCACGGCAATTAAGAGCCTGTTTGTTGGAGCATTAACAGCCTCAGGCAAACTCAACAAACCCA
TATTCCTTGGCTTCTGGTAATGACAGATTTCGTAGGAAGTATTATTTAATTAAGAATAATTTGA
AAGAACAGTTCAGCTGAGAAACTGCATTTACTAGAAACACTAAGTAATGGTAAGTGGAAAAGGC
ATGCAATTTGTCAGCCTTCTATGTTATCTTTCTGAAATACATCCATAGCTTATCGATGTCTGCC
CTAGATTGTTTTCAGCGGTCTCTGAGGTCATCATGCCCAAAGAGCTTTATTCCCTTGCCGTACA
ATGCTGTGAATAGTCCTTAGCAGTTGGACTCAGTTAAGAAATCCCTCAGAGCTTTCAACCAACC
GTTCAAAGCCAGCATCCTTTGTCTGTCCCTTCTCTGGACAAGGGCAACTGCCAGCTCCCTTTGC
TTGGGTACCCCACTCCCTCCCACCTCCATCCATCACATGATGCAGATCACTTCCCAGATGTGAG
TCTTTTGTTCTTCCTCCTTTCACAAGTCTTTAAGAGTACATCAGCTATTTGGAGGCTAGCTGGG
TCTAAACCACAAACCCCACCCTGAGAAAAGCATCCTGATTCCATGACACTGGCAGTAGGGAAGC
AAAACCTGCCTGCTTAGAATTACTGGACTAAAACTCCTTGCATCCAAAAGCCTCTTCAAGAGTT
GATTATAATTTAAAGACCGATTTCAAACCGGCAAGGGGAGGACTACTCTAAGTTGTTCTGACAT
CCAGTGGAAGCTGGCAGCAGGAGGCAAAGTCCATAATTCCAGAAACAGGCTTGGGGAGAATACA
AAAATAGAACACATTCACTCCATGGAAGGAGGAGAAAAGACTTCACCTTGACTTGAATGGAGAC
CTCCTTTGGGAAGCAATGAGTTTCCAATAACCTGTGGCGTGGCTTTTTTTAATCTGGAAAATAC
TCAACCCCAGGGCTTGCCATTCTACTTGGCTTCTGAAACTCCTGCAAGCCGATGTGGACTACAG
GTAGAATGAGCAATGCAAAGAGCTGGCTTGGACTTGGCACATCCTTGTACTTCTGGGCACTGAT
GGACCTTGCGACCACCGTTCTGTCCAGCACTCCGATGCCGGAAGTCGAGTTAGATACACTCTTC
TCAGGAAAGCCACAGTCACATCAGCGGAGCAGGAGGAGCTGGGTTTGGAACCAATTTTTTGTCC
TGGAAGAGTACACTGGGACTGACCCTCTGTATGTCGGCAAGCTTCATTCAGACATGGACAGGGG
AGATGGATCCATCAAATACATCCTTTCAGGAGAAGGAGCAGGGATCGTGTTTACCATTGATGAC
ACCACTGGAGACATCCATGCCATTCAGAGGCTTGATCGAGAGGAAAGAGCCCAATATACTCTAA
GAGCTCAAGCCCTAGACAGGAGAACAGGCCGGCCAATGGAGCCAGAATCAGAGTTTATTATCAA
AATTCAAGATATCAATGACAACGAGCCCAAGTTCCTGGATGGACCTTACGTTGCCACTGTGCCA
GAAATGTCACCAGTAGGTACCTCTGTTATCCAAGTGACAGCCACAGATGCTGATGACCCAACCT
ATGGCAACAGTGCCCGAGTTGTGTACAGCATTCTCCAGGGCCAGCCATATTTTTCTGTGGACTC
CAAAACAGGTGTAATCAGAACAGCGCTCATGAACATGGACAGAGAAGCCAAGGAATACTATGAA
GTGATTATCCAAGCCAAGGATATGGGGGGTCAACTTGGAGGATTGGCTGGGACCACAACAGTCA
ACATCACACTCTCAGATGTCAATGATAACCCACCCCGGTTTCCACAGAAACATTATCAGATGAG
TGTGCTGGAGTCCGCTCCTGTTAGCTCGACTGTGGGGAGAGTGTTTGCCAAAGACCTGGACGAA
GGCATCAATGCAGAAATGAAGTACACCATTGTGGATGGAGATGGTGCAGACGCTTTTGATATCA
ATACAGACCCGAACTTCCAAGTTGGCATCATAACTGTGAAGAAGCCTTTGAGTTTTGAAAGCAA
GAAAAGCTACACCCTGAAGGTGGAAGGATCCAATCCTCACGTAGAGATGCGTTTTCTGAACCTT
GGCCCATTTCAGGACACAACAACAGTGCACATCAGTGTGGAGGATGTGGACGAGCCCCCTGTGT
TTGAGCCCGGCTTTTATTTTGTGGAGGTGCCAGAGGATGTGACAATTGGAACAACCATACAGAT
CATTTCTGCCAAGGACCCAGACGTGACCAACAACTCAATCAGATACTCCATTGACAGAGGCAGC
GACCCTGGAAGATTTTTCTATGTTGACATTACAACAGGTGCTCTAATGACTGCAAGACCACTAG
ACAGAGAAGAGTTTTCTTGGCATAATATAACTGTTCTTGCTATGGAAATGAACAACCCCTCCCA
AGTGGGAAGTGTTGCTGTCACAATCAAAGTCCTAGATGTGAATGACAATGCTCCAGAGTTTCCC
AGATTCTATGAAGCTTTCATCTGTGAAAATGCCAAAGCGGGACAGCTGATCCAGACAGTGAGTG
CTGTGGATCAAGATGACCCTCACAATGGTCAACATTTCTACTACAGTTTGGCTCCTGAGGCTGC
TAACAACCCCAACTTCACTGTCAGGGACAACCAAGATAATACCGCTCGCATTCTGACCAGGAGG
TCCGGCTTCCGACAGCAGGAGCAGAGCGTCTTCTACCTGCCCATCCTCATAGCAGACAGCGGCC
AGCCGGTCCTCAGCAGCACCGGCACACTTACCATTCAAGTGTGCAGCTGCAGTGACGATGGCCA
CGTCATGTCCTGCAGCCCAGAGGCATATATGCTCCCAGTCAGTTTGAGTCGGGGTGCCCTCATC
GCCATCCTGGCCTGCGTCTTTGTTCTCTTAGTATTGGTGCTGCTCATCCTGTCCATGAGGCGCC
ACCGAAAACAACCCTACATCATCGACGACGACGAGAACATCCACGAGAACATTGTGCGCTATGA
CGACGAGGGGGGAGGCGAAGAGGACACAGAGGCCTTCGACATCGCCGCCATGTGGAACCCGCGC
GAGGCGCAGGCGGGCGCCGCCCCGAAGACGCGGCAGGACATGCTCCCCGAGATCGAGAGCCTCT
CCCGCTACGTGCCTCAGACGTGCGCGGTCAGCAGCACGGTCCACAGCTACGTGCTGGCCAAGCT
CTACGAGGCCGACATGGACCTGTGGGCCCCGCCCTTCGATTCCCTGCAGACCTACATGTTTGAG
GGGGACGGCTCCGTGGCCGGCTCGCTCAGCTCGCTTCAGTCAGCCACCTCGGACTCAGAGCAGA
GCTTTGATTTCCTCACGGACTGGGGACCTCGCTTCCGGAAACTGGCAGAACTCTACGGGGCGTC
GGAGGGGCCCTCGCCCTTGTGGTGACAGAAGCCCGGAGGCCAAGGTGCACCCAAATCCAGACGT
TCTCAAACGCTGCTTCTCGTCCATGAGGCGCGGCCACCACAGGAGCAATATTGTGCTGGACAGT
GAGGATGGGAGTGAGTGGACCCAACAGAGCTCTCTCTGGATCAGCTTTACTTGGTTAGACGAAA
TTAAATAATCAGAAGGAAACCCAGAAGAAGAGGGCAGAATCCCCAATTATCTTTTTAATTTGCT
TTTTGACACTGTATTCACAGGTTTGAAGTATTAAAGCTTGGCTTTTTTGTTTGTTTATTTGTTT
GTTTCTCTGTTTTTCCTATTCACCAAGGCCTTTGTCATTTTGCCACCAAGAAAAGGCTCCAGTG
TTAACCTACAGAGGTAGTAGGTGAAGGTCTGGAGGCAGAGAACAAGTCCTACTCCAGAATCTAT
GTTATCTGTATTCCCCATTTCAGATTGTTTCTCTGGATCCTCAGATCTGCAGAAAACAACACGC
GCGGGAGCGCACGCGTACACACACACACACACACACACACACACACACACACACACACACACAC
TACTGAAAAAAGTATTCCTCAGTGAAATCATCTTGCTTGTTCTAAGGTGGGTGGTATACTATTT
AACCCTTTCAACACAAGGTTTAGACTTTCTTGACCTTGCATGGGGAATTGTTGGGGAGGGTGGG
AGAAGGAAGAGACATTGACTTGTGTTCATGTTTAAGAGCTGAACCAAGAGTTGGCATTATAGCT
GATCCAGCATCAGCTTTTACATGCCTTGGCAAAAGTCAGAAGGAAACCAGAAAAGCTGCCTCTT
TTGCACTGTAGATGTCTCTTCTGTGTGCCAAATGTGGAGACCAGATGCAACAAACGAAAGCCAA
ATAAGAAGTATCTGATAAAAGCATGGGTCTGAGGGCTTTCCTAATCTGTATAAAGTCAATCCAA
GGGATGTTTACATACTGTAGATAACCTACTTGAACAAAGTCAGTATTATAGAGAAGAATGGATG
TAAGAGTATTACCTGTAAAAGTTTTGTATATTTGTTAATAATTTTGTTAATAAATATGATGTAC
TACA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001012766	(Get FASTA)	NCBI Sequence Viewer
	XP_017454360	(Get FASTA)	NCBI Sequence Viewer
	XP_017454361	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAD90596	(Get FASTA)	NCBI Sequence Viewer
	EDL91729	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000019907
GenBank Protein	Q5DWV1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001012766 ⟸ NM_001012748
- Peptide Label:	precursor
- UniProtKB:	Q5DWV1 (UniProtKB/Swiss-Prot), A6JST1 (UniProtKB/TrEMBL), G3V7W5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWTTGRMSNAKSWLGLGTSLYFWALMDLATTVLSSTPMPEVELDTLFSGKPQSHQRSRRSWVWN QFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERA QYTLRAQALDRRTGRPMEPESEFIIKIQDINDNEPKFLDGPYVATVPEMSPVGTSVIQVTATDA DDPTYGNSARVVYSILQGQPYFSVDSKTGIIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAG TTTVNITLSDVNDNPPRFPQKHYQMSVLESAPVSSTVGRVFAKDLDEGINAEMKYTIVDGDGAD AFDINTDPNFQVGIITVKKPLSFESKKSYTLKVEGSNPHVEMRFLNLGPFQDTTTVHIIVEDVD EPPVFEPRFYFVEVPEDVTIGTTIQIISAKDPDMTNNSIRYSIDRGSDPGRFFYVDITTGALMT ARPLDREEFSWHNITVLAMEMNNPSQVGSVAATIKVLDVNDNAPEFPRFYEAFICENAKAGQLI QTVSAVDQDDPHNGQHFYYSLAPEAANNPNFTVRDNQDNTARILTRRSGFRQQEQSVFYLPILI ADSGQPVLSSTGTLTIQVCSCSDDGHVMSCSPEAYMLPVSLSRGALIAILACVFVLLVLVLLIL SMRRHRKQPYIIDDDENIHENIVRYDDEGGGEEDTEAFDIAAMWNPREAQAGAAPKTRQDMLPE IESLSRYVPQTCAVSSTVHSYVLAKLYEADMDLWAPPFDSLQTYMFEGDGSVAGSLSSLQSATS DSEQSFDFLTDWGPRFRKLAELYGASEGPSPLW hide sequence

RefSeq Acc Id:

XP_017454360 ⟸ XM_017598871

- Peptide Label:

isoform X1

- Sequence:

show sequence

MWTTGRMSNAKSWLGLGTSLYFWALMDLATTVLSSTPMPEVELDTLFSGKPQSHQRSRRSWVWN
QFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERA
QYTLRAQALDRRTGRPMEPESEFIIKIQDINDNEPKFLDGPYVATVPEMSPVGTSVIQVTATDA
DDPTYGNSARVVYSILQGQPYFSVDSKTGVIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAG
TTTVNITLSDVNDNPPRFPQKHYQMSVLESAPVSSTVGRVFAKDLDEGINAEMKYTIVDGDGAD
AFDINTDPNFQVGIITVKKPLSFESKKSYTLKVEGSNPHVEMRFLNLGPFQDTTTVHISVEDVD
EPPVFEPGFYFVEVPEDVTIGTTIQIISAKDPDVTNNSIRYSIDRGSDPGRFFYVDITTGALMT
ARPLDREEFSWHNITVLAMEMNNPSQVGSVAVTIKVLDVNDNAPEFPRFYEAFICENAKAGQLI
QTVSAVDQDDPHNGQHFYYSLAPEAANNPNFTVRDNQDNTARILTRRSGFRQQEQSVFYLPILI
ADSGQPVLSSTGTLTIQVCSCSDDGHVMSCSPEAYMLPVSLSRGALIAILACVFVLLVLVLLIL
SMRRHRKQPYIIDDDENIHENIVRYDDEGGGEEDTEAFDIAAMWNPREAQAGAAPKTRQDMLPE
IESLSRYVPQTCAVSSTVHSYVLAKLYEADMDLWAPPFDSLQTYMFEGDGSVAGSLSSLQSATS
DSEQSFDFLTDWGPRFRKLAELYGASEGPSPLW

hide sequence

RefSeq Acc Id:	XP_017454361 ⟸ XM_017598872
- Peptide Label:	isoform X1
- UniProtKB:	Q5DWV1 (UniProtKB/Swiss-Prot), G3V7W5 (UniProtKB/TrEMBL), A6JST1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWTTGRMSNAKSWLGLGTSLYFWALMDLATTVLSSTPMPEVELDTLFSGKPQSHQRSRRSWVWN QFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERA QYTLRAQALDRRTGRPMEPESEFIIKIQDINDNEPKFLDGPYVATVPEMSPVGTSVIQVTATDA DDPTYGNSARVVYSILQGQPYFSVDSKTGVIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAG TTTVNITLSDVNDNPPRFPQKHYQMSVLESAPVSSTVGRVFAKDLDEGINAEMKYTIVDGDGAD AFDINTDPNFQVGIITVKKPLSFESKKSYTLKVEGSNPHVEMRFLNLGPFQDTTTVHISVEDVD EPPVFEPGFYFVEVPEDVTIGTTIQIISAKDPDVTNNSIRYSIDRGSDPGRFFYVDITTGALMT ARPLDREEFSWHNITVLAMEMNNPSQVGSVAVTIKVLDVNDNAPEFPRFYEAFICENAKAGQLI QTVSAVDQDDPHNGQHFYYSLAPEAANNPNFTVRDNQDNTARILTRRSGFRQQEQSVFYLPILI ADSGQPVLSSTGTLTIQVCSCSDDGHVMSCSPEAYMLPVSLSRGALIAILACVFVLLVLVLLIL SMRRHRKQPYIIDDDENIHENIVRYDDEGGGEEDTEAFDIAAMWNPREAQAGAAPKTRQDMLPE IESLSRYVPQTCAVSSTVHSYVLAKLYEADMDLWAPPFDSLQTYMFEGDGSVAGSLSSLQSATS DSEQSFDFLTDWGPRFRKLAELYGASEGPSPLW hide sequence

Ensembl Acc Id:

ENSRNOP00000019907 ⟸ ENSRNOT00000019907

Protein Domains

Cadherin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5DWV1-F1-model_v2	AlphaFold	Q5DWV1	1-801	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305438	AgrOrtholog
BioCyc Gene	G2FUF-18641	BioCyc
Ensembl Genes	ENSRNOG00000014556	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000019907	ENTREZGENE
Gene3D-CATH	4.10.900.10	UniProtKB/Swiss-Prot
	Cadherins	UniProtKB/Swiss-Prot
InterPro	Cadherin	UniProtKB/Swiss-Prot
	Cadherin-like_dom	UniProtKB/Swiss-Prot
	Cadherin-like_sf	UniProtKB/Swiss-Prot
	Cadherin_CS	UniProtKB/Swiss-Prot
	Cadherin_cytoplasmic-dom	UniProtKB/Swiss-Prot
	Catenin_binding_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:363948	UniProtKB/Swiss-Prot
NCBI Gene	363948	ENTREZGENE
PANTHER	CADHERIN-20	UniProtKB/Swiss-Prot
	PTHR24027	UniProtKB/Swiss-Prot
Pfam	Cadherin	UniProtKB/Swiss-Prot
	Cadherin_C	UniProtKB/Swiss-Prot
PhenoGen	Cdh20	PhenoGen
PRINTS	CADHERIN	UniProtKB/Swiss-Prot
PROSITE	CADHERIN_1	UniProtKB/Swiss-Prot
	CADHERIN_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000014556	RatGTEx
SMART	SM00112	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49313	UniProtKB/Swiss-Prot
UniProt	A6JST1	ENTREZGENE, UniProtKB/TrEMBL
	CAD20_RAT	UniProtKB/Swiss-Prot
	G3V7W5	ENTREZGENE, UniProtKB/TrEMBL
	Q5DWV1	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Cdh20	cadherin 20	Cdh20_predicted	cadherin 20 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Cdh20_predicted	cadherin 20 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar