Zcwpw1 (zinc finger CW-type and PWWP domain containing 1) - Rat Genome Database

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Gene: Zcwpw1 (zinc finger CW-type and PWWP domain containing 1) Rattus norvegicus
Analyze
Symbol: Zcwpw1
Name: zinc finger CW-type and PWWP domain containing 1
RGD ID: 1305405
Description: Predicted to enable histone H3K36me3 reader activity and histone H3K4me3 reader activity. Predicted to be involved in several processes, including double-strand break repair involved in meiotic recombination; epigenetic regulation of gene expression; and positive regulation of DNA metabolic process. Predicted to act upstream of or within homologous chromosome pairing at meiosis. Predicted to be located in XY body. Predicted to be active in nucleus. Orthologous to human ZCWPW1 (zinc finger CW-type and PWWP domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-amino-4,6-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC304368; LOC498167; RGD1566138; similar to Zinc finger, CW type with PWWP domain 1; zinc finger CW-type PWWP domain protein 1; zinc finger, CW-type with PWWP domain 1
RGD Orthologs
Human
Mouse
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81224,517,428 - 24,547,942 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1224,516,574 - 24,548,630 (-)EnsemblGRCr8
mRatBN7.21218,880,625 - 18,910,713 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1218,880,633 - 18,910,711 (-)EnsemblmRatBN7.2
Rnor_6.01221,418,874 - 21,450,617 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,950,993 - 21,973,474 (-)NCBIrn6Rnor6.0
Rnor_5.01223,442,256 - 23,472,913 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41219,854,699 - 19,884,804 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1220,686,390 - 20,709,370 (-)NCBICelera
RGSC_v3.11219,844,260 - 19,946,923 (+)NCBI
Cytogenetic Map12q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,ISO)
XY body  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zcwpw1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81224,517,428 - 24,547,942 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1224,516,574 - 24,548,630 (-)EnsemblGRCr8
mRatBN7.21218,880,625 - 18,910,713 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1218,880,633 - 18,910,711 (-)EnsemblmRatBN7.2
Rnor_6.01221,418,874 - 21,450,617 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,950,993 - 21,973,474 (-)NCBIrn6Rnor6.0
Rnor_5.01223,442,256 - 23,472,913 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41219,854,699 - 19,884,804 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1220,686,390 - 20,709,370 (-)NCBICelera
RGSC_v3.11219,844,260 - 19,946,923 (+)NCBI
Cytogenetic Map12q12NCBI
ZCWPW1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,400,872 - 100,428,703 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,400,826 - 100,428,992 (-)Ensemblhg38GRCh38
GRCh37799,998,495 - 100,026,326 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,836,431 - 99,864,238 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34799,643,146 - 99,670,953NCBI
Celera794,728,294 - 94,756,101 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,632,093 - 94,659,867 (-)NCBIHuRef
CHM1_1799,929,109 - 99,957,044 (-)NCBICHM1_1
T2T-CHM13v2.07101,640,949 - 101,668,781 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,358,580 - 99,386,516 (-)NCBI
Zcwpw1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395137,785,593 - 137,820,883 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5137,786,060 - 137,820,883 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385137,787,157 - 137,822,621 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5137,787,798 - 137,822,621 (+)Ensemblmm10GRCm38
MGSCv375138,229,030 - 138,263,849 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365138,017,663 - 138,052,409 (+)NCBIMGSCv36mm8
Celera5134,774,231 - 134,809,026 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.71NCBI
ZCWPW1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,323,191 - 8,358,487 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.138,318,683 - 8,356,195 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.237,661,786 - 7,700,090 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZCWPW1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,777,291 - 12,802,385 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660703,486,498 - 3,514,791 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zcwpw1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474016,649,335 - 16,669,415 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474016,646,644 - 16,668,948 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Zcwpw1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11616,204,506 - 16,235,592 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zcwpw1
361 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12592191825247790Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)122013902826430640Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121874946936488809Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121874946934312613Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743833700556Rat

Markers in Region
RH139788  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01223,711,309 - 23,711,529NCBIRnor5.0
Rnor_5.01223,442,623 - 23,442,842NCBIRnor5.0
Rnor_5.01223,968,708 - 23,968,852NCBIRnor5.0
RGSC_v3.41220,007,387 - 20,007,606UniSTSRGSC3.4
RGSC_v3.41219,884,217 - 19,884,436UniSTSRGSC3.4
Celera1220,686,758 - 20,686,977UniSTS
RH 3.4 Map12269.0UniSTS
Cytogenetic Map12q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 17 50 65 131 92 11 49 32 32 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000065866   ⟹   ENSRNOP00000062266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1224,516,894 - 24,547,450 (-)Ensembl
mRatBN7.2 Ensembl1218,880,633 - 18,910,711 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000071110   ⟹   ENSRNOP00000067164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1224,516,574 - 24,539,918 (-)Ensembl
mRatBN7.2 Ensembl1218,880,633 - 18,903,118 (-)Ensembl
Rnor_6.0 Ensembl1221,950,993 - 21,973,474 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000134657   ⟹   ENSRNOP00000106634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1224,516,723 - 24,548,630 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000138666   ⟹   ENSRNOP00000110323
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1224,516,840 - 24,540,428 (-)Ensembl
RefSeq Acc Id: XM_039090046   ⟹   XP_038945974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81224,517,428 - 24,547,942 (-)NCBI
mRatBN7.21218,880,625 - 18,910,711 (-)NCBI
RefSeq Acc Id: XM_039090047   ⟹   XP_038945975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81224,517,428 - 24,547,515 (-)NCBI
mRatBN7.21218,880,625 - 18,910,711 (-)NCBI
RefSeq Acc Id: XM_063271775   ⟹   XP_063127845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81224,517,428 - 24,547,515 (-)NCBI
RefSeq Acc Id: XM_063271776   ⟹   XP_063127846
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81224,517,428 - 24,547,515 (-)NCBI
RefSeq Acc Id: XM_063271777   ⟹   XP_063127847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81224,517,428 - 24,547,515 (-)NCBI
RefSeq Acc Id: XM_063271778   ⟹   XP_063127848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81224,517,428 - 24,547,515 (-)NCBI
RefSeq Acc Id: XM_063271779   ⟹   XP_063127849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81224,517,428 - 24,547,515 (-)NCBI
RefSeq Acc Id: XP_038945975   ⟸   XM_039090047
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038945974   ⟸   XM_039090046
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000067164   ⟸   ENSRNOT00000071110
Ensembl Acc Id: ENSRNOP00000062266   ⟸   ENSRNOT00000065866
RefSeq Acc Id: XP_063127848   ⟸   XM_063271778
- Peptide Label: isoform X6
- UniProtKB: M0RC55 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127846   ⟸   XM_063271776
- Peptide Label: isoform X2
- UniProtKB: M0RC55 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127847   ⟸   XM_063271777
- Peptide Label: isoform X5
- UniProtKB: M0RC55 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127849   ⟸   XM_063271779
- Peptide Label: isoform X7
- UniProtKB: M0RC55 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127845   ⟸   XM_063271775
- Peptide Label: isoform X1
- UniProtKB: M0RC55 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000110323   ⟸   ENSRNOT00000138666
Ensembl Acc Id: ENSRNOP00000106634   ⟸   ENSRNOT00000134657
Protein Domains
CW-type   PWWP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LT90-F1-model_v2 AlphaFold F1LT90 1-471 view protein structure
AF-M0RC55-F1-model_v2 AlphaFold M0RC55 1-625 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305405 AgrOrtholog
BioCyc Gene G2FUF-19723 BioCyc
Ensembl Genes ENSRNOG00000052199 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065866 ENTREZGENE
  ENSRNOT00000065866.5 UniProtKB/TrEMBL
  ENSRNOT00000071110.5 UniProtKB/TrEMBL
  ENSRNOT00000134657.1 UniProtKB/TrEMBL
  ENSRNOT00000138666 ENTREZGENE
  ENSRNOT00000138666.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
  3.30.40.100 UniProtKB/TrEMBL
InterPro PWWP_dom UniProtKB/TrEMBL
  ZCWPW1/ZCWPW2 UniProtKB/TrEMBL
  Znf_CW UniProtKB/TrEMBL
NCBI Gene 304368 ENTREZGENE
PANTHER PTHR15999 UniProtKB/TrEMBL
  ZINC FINGER CW-TYPE PWWP DOMAIN PROTEIN 1 UniProtKB/TrEMBL
Pfam PWWP UniProtKB/TrEMBL
  zf-CW UniProtKB/TrEMBL
PhenoGen Zcwpw1 PhenoGen
PROSITE PWWP UniProtKB/TrEMBL
  ZF_CW UniProtKB/TrEMBL
RatGTEx ENSRNOG00000052199 RatGTEx
SMART PWWP UniProtKB/TrEMBL
Superfamily-SCOP Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0ABK0L8H6_RAT UniProtKB/TrEMBL
  A0ABK0M5Y4_RAT UniProtKB/TrEMBL
  F1LT90 ENTREZGENE, UniProtKB/TrEMBL
  M0RC55 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Zcwpw1  zinc finger CW-type and PWWP domain containing 1  RGD1566138  similar to Zinc finger, CW type with PWWP domain 1  Data merged from RGD:1566138 737654 PROVISIONAL
2016-02-17 Zcwpw1  zinc finger CW-type and PWWP domain containing 1  Zcwpw1  zinc finger, CW-type with PWWP domain 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zcwpw1  zinc finger, CW-type with PWWP domain 1   Zcwpw1_predicted  zinc finger, CW-type with PWWP domain 1 (predicted)  'predicted' is removed 2292626 APPROVED
2008-04-30 RGD1566138  similar to Zinc finger, CW type with PWWP domain 1   RGD1566138_predicted  similar to Zinc finger, CW type with PWWP domain 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1566138_predicted  similar to Zinc finger, CW type with PWWP domain 1 (predicted)  LOC498167  similar to Zinc finger, CW type with PWWP domain 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498167  similar to Zinc finger, CW type with PWWP domain 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Zcwpw1_predicted  zinc finger, CW-type with PWWP domain 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED