Arhgdib (Rho GDP dissociation inhibitor beta) - Rat Genome Database

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Gene: Arhgdib (Rho GDP dissociation inhibitor beta) Rattus norvegicus
Analyze
Symbol: Arhgdib
Name: Rho GDP dissociation inhibitor beta
RGD ID: 1305383
Description: Predicted to enable GTPase activity; Rho GDP-dissociation inhibitor activity; and small GTPase binding activity. Involved in cellular response to redox state. Predicted to be located in cytoplasm. Predicted to be active in cytosol and membrane. Orthologous to human ARHGDIB (Rho GDP dissociation inhibitor beta); PARTICIPATES IN neurotrophic factor signaling pathway; vasopressin signaling pathway via receptor type 2; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362456; MGC108926; rho GDP-dissociation inhibitor 2; Rho, GDP dissociation inhibitor (GDI) beta
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84171,554,139 - 171,573,057 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4171,554,140 - 171,573,068 (-)EnsemblGRCr8
mRatBN7.24169,822,951 - 169,841,884 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,822,952 - 169,841,658 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4176,118,119 - 176,137,767 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04171,899,407 - 171,918,061 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04170,523,784 - 170,543,430 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04170,913,920 - 170,932,789 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,913,923 - 170,932,618 (-)Ensemblrn6Rnor6.0
Rnor_5.04235,170,739 - 235,189,606 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44173,967,842 - 173,986,494 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4158,405,444 - 158,424,190 (-)NCBICelera
RGSC_v3.14174,212,966 - 174,231,618 (-)NCBI
Cytogenetic Map4q43NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
acrolein  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
Azoxymethane  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
buspirone  (EXP)
buta-1,3-diene  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chloroprene  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
CU-O LINKAGE  (ISO)
curcumin  (ISO)
cyclophosphamide  (ISO)
cytarabine  (ISO)
D-glucose  (ISO)
dextran sulfate  (ISO)
diallyl disulfide  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
diethylstilbestrol  (ISO)
dimethylarsinic acid  (ISO)
diuron  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
etoposide  (ISO)
fenthion  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
fucoxanthin  (ISO)
genistein  (EXP)
gentamycin  (EXP)
glucose  (ISO)
hydrazine  (ISO)
hydrogen peroxide  (EXP)
isoprenaline  (EXP)
isotretinoin  (ISO)
L-ascorbic acid  (ISO)
lead nitrate  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylarsonic acid  (ISO)
methylmercury chloride  (ISO)
myricetin  (ISO)
N-acetyl-beta-D-glucosamine  (ISO)
N-acetyl-D-glucosamine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (EXP)
nickel atom  (ISO)
niclosamide  (ISO)
nimesulide  (EXP)
nitrates  (ISO)
okadaic acid  (ISO)
oxycodone  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorododecanoic acid  (EXP)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
propanal  (ISO)
prostaglandin D2  (ISO)
prostaglandin J2  (ISO)
quercetin  (EXP,ISO)
S-nitrosoglutathione  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Modulation of GDP-dissociation inhibitor protein membrane retention by the cellular redox state in adipocytes. Chinni SR, etal., Exp Cell Res. 1998 Jul 10;242(1):373-80.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7512369   PMID:8262133   PMID:8356058   PMID:10802295   PMID:12477932   PMID:19056867   PMID:19272173   PMID:20458337   PMID:23376485   PMID:24554735  


Genomics

Comparative Map Data
Arhgdib
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84171,554,139 - 171,573,057 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4171,554,140 - 171,573,068 (-)EnsemblGRCr8
mRatBN7.24169,822,951 - 169,841,884 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,822,952 - 169,841,658 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4176,118,119 - 176,137,767 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04171,899,407 - 171,918,061 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04170,523,784 - 170,543,430 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04170,913,920 - 170,932,789 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,913,923 - 170,932,618 (-)Ensemblrn6Rnor6.0
Rnor_5.04235,170,739 - 235,189,606 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44173,967,842 - 173,986,494 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4158,405,444 - 158,424,190 (-)NCBICelera
RGSC_v3.14174,212,966 - 174,231,618 (-)NCBI
Cytogenetic Map4q43NCBI
ARHGDIB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381214,942,015 - 14,961,601 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1214,942,015 - 14,961,985 (-)Ensemblhg38GRCh38
GRCh371215,094,949 - 15,114,535 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361214,986,217 - 15,005,829 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341214,986,216 - 15,005,829NCBI
Celera1220,239,953 - 20,259,563 (-)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1214,864,323 - 14,883,946 (-)NCBIHuRef
CHM1_11215,061,055 - 15,080,666 (-)NCBICHM1_1
T2T-CHM13v2.01214,819,352 - 14,838,935 (-)NCBIT2T-CHM13v2.0
Arhgdib
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396136,900,653 - 136,918,895 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6136,900,653 - 136,918,897 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386136,923,655 - 136,941,899 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6136,923,655 - 136,941,899 (-)Ensemblmm10GRCm38
MGSCv376136,872,230 - 136,890,238 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366136,887,905 - 136,905,913 (-)NCBIMGSCv36mm8
Celera6139,963,719 - 139,982,279 (-)NCBICelera
Cytogenetic Map6G1NCBI
cM Map666.72NCBI
Arhgdib
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541311,670,687 - 11,688,611 (-)Ensembl
ChiLan1.0NW_00495541311,670,889 - 11,688,357 (-)NCBIChiLan1.0ChiLan1.0
ARHGDIB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21020,390,448 - 20,410,055 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,387,209 - 20,406,816 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01214,944,746 - 14,964,357 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11215,341,489 - 15,361,160 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1215,341,491 - 15,361,160 (-)EnsemblpanPan2panpan1.1
ARHGDIB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12731,662,817 - 31,681,951 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2731,662,925 - 31,681,642 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2714,767,149 - 14,786,289 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02731,969,288 - 31,988,436 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2731,969,390 - 31,988,430 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12731,858,692 - 31,877,811 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02731,817,127 - 31,836,266 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02714,499,357 - 14,518,538 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Arhgdib
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494592,743,584 - 92,822,130 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365872,470,867 - 2,549,861 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365872,471,344 - 2,549,765 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGDIB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl557,576,776 - 57,598,869 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1557,576,754 - 57,598,395 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2560,965,708 - 60,987,353 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGDIB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11114,839,349 - 14,859,237 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,839,242 - 14,859,493 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606920,450,828 - 20,470,769 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgdib
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475223,073,680 - 23,091,313 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475223,074,249 - 23,090,866 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Arhgdib
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1612,489,562 - 12,507,699 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Arhgdib
141 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:115
Interacting mature miRNAs:133
Transcripts:ENSRNOT00000007779
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4148121375176967367Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat

Markers in Region
D4Wox38  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24169,823,287 - 169,823,344 (+)MAPPERmRatBN7.2
Rnor_6.04170,914,257 - 170,914,313NCBIRnor6.0
Rnor_5.04235,171,076 - 235,171,132UniSTSRnor5.0
RGSC_v3.44173,968,173 - 173,968,229UniSTSRGSC3.4
Celera4158,405,775 - 158,405,831UniSTS
Cytogenetic Map4q43UniSTS
RH130748  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84171,554,195 - 171,554,382 (+)Marker Load Pipeline
mRatBN7.24169,823,007 - 169,823,194 (+)MAPPERmRatBN7.2
Rnor_6.04170,913,977 - 170,914,163NCBIRnor6.0
Rnor_5.04235,170,796 - 235,170,982UniSTSRnor5.0
RGSC_v3.44173,967,893 - 173,968,079UniSTSRGSC3.4
Celera4158,405,495 - 158,405,681UniSTS
RH 3.4 Map41023.3UniSTS
Cytogenetic Map4q43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000007779   ⟹   ENSRNOP00000007779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4171,554,142 - 171,572,836 (-)Ensembl
mRatBN7.2 Ensembl4169,822,954 - 169,841,658 (-)Ensembl
Rnor_6.0 Ensembl4170,913,923 - 170,932,618 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109610   ⟹   ENSRNOP00000083858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4171,554,140 - 171,573,068 (-)Ensembl
mRatBN7.2 Ensembl4169,822,952 - 169,841,564 (-)Ensembl
RefSeq Acc Id: NM_001009600   ⟹   NP_001009600
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,554,145 - 171,572,800 (-)NCBI
mRatBN7.24169,822,957 - 169,841,622 (-)NCBI
Rnor_6.04170,913,926 - 170,932,578 (-)NCBI
Rnor_5.04235,170,739 - 235,189,606 (-)NCBI
RGSC_v3.44173,967,842 - 173,986,494 (-)RGD
Celera4158,405,444 - 158,424,190 (-)RGD
Sequence:
RefSeq Acc Id: XM_006237561   ⟹   XP_006237623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,554,139 - 171,573,057 (-)NCBI
mRatBN7.24169,822,951 - 169,841,884 (-)NCBI
Rnor_6.04170,913,920 - 170,932,789 (-)NCBI
Rnor_5.04235,170,739 - 235,189,606 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006237562   ⟹   XP_006237624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,554,139 - 171,572,620 (-)NCBI
mRatBN7.24169,822,951 - 169,841,441 (-)NCBI
Rnor_6.04170,913,920 - 170,932,478 (-)NCBI
Rnor_5.04235,170,739 - 235,189,606 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006237563   ⟹   XP_006237625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,554,139 - 171,572,983 (-)NCBI
mRatBN7.24169,822,951 - 169,841,780 (-)NCBI
Rnor_6.04170,913,920 - 170,932,771 (-)NCBI
Rnor_5.04235,170,739 - 235,189,606 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006237564   ⟹   XP_006237626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,554,139 - 171,572,652 (-)NCBI
mRatBN7.24169,822,951 - 169,841,466 (-)NCBI
Rnor_6.04170,913,920 - 170,932,478 (-)NCBI
Rnor_5.04235,170,739 - 235,189,606 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006237565   ⟹   XP_006237627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,554,139 - 171,572,273 (-)NCBI
mRatBN7.24169,822,951 - 169,841,008 (-)NCBI
Rnor_6.04170,913,920 - 170,932,192 (-)NCBI
Rnor_5.04235,170,739 - 235,189,606 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063286373   ⟹   XP_063142443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,554,139 - 171,570,837 (-)NCBI
RefSeq Acc Id: NP_001009600   ⟸   NM_001009600
- UniProtKB: Q5M860 (UniProtKB/TrEMBL),   A6IMJ6 (UniProtKB/TrEMBL),   A0A8I5ZXI2 (UniProtKB/TrEMBL),   F7FLL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237623   ⟸   XM_006237561
- Peptide Label: isoform X1
- UniProtKB: Q5M860 (UniProtKB/TrEMBL),   A6IMJ6 (UniProtKB/TrEMBL),   A0A8I5ZXI2 (UniProtKB/TrEMBL),   F7FLL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237625   ⟸   XM_006237563
- Peptide Label: isoform X1
- UniProtKB: Q5M860 (UniProtKB/TrEMBL),   A6IMJ6 (UniProtKB/TrEMBL),   A0A8I5ZXI2 (UniProtKB/TrEMBL),   F7FLL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237626   ⟸   XM_006237564
- Peptide Label: isoform X1
- UniProtKB: Q5M860 (UniProtKB/TrEMBL),   A6IMJ6 (UniProtKB/TrEMBL),   A0A8I5ZXI2 (UniProtKB/TrEMBL),   F7FLL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237624   ⟸   XM_006237562
- Peptide Label: isoform X1
- UniProtKB: Q5M860 (UniProtKB/TrEMBL),   A6IMJ6 (UniProtKB/TrEMBL),   A0A8I5ZXI2 (UniProtKB/TrEMBL),   F7FLL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237627   ⟸   XM_006237565
- Peptide Label: isoform X1
- UniProtKB: Q5M860 (UniProtKB/TrEMBL),   A6IMJ6 (UniProtKB/TrEMBL),   A0A8I5ZXI2 (UniProtKB/TrEMBL),   F7FLL0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007779   ⟸   ENSRNOT00000007779
Ensembl Acc Id: ENSRNOP00000083858   ⟸   ENSRNOT00000109610
RefSeq Acc Id: XP_063142443   ⟸   XM_063286373
- Peptide Label: isoform X1
- UniProtKB: A6IMJ6 (UniProtKB/TrEMBL),   F7FLL0 (UniProtKB/TrEMBL),   Q5M860 (UniProtKB/TrEMBL),   A0A8I5ZXI2 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M860-F1-model_v2 AlphaFold Q5M860 1-200 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693469
Promoter ID:EPDNEW_R3994
Type:initiation region
Name:Arhgdib_1
Description:Rho GDP dissociation inhibitor beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04170,932,565 - 170,932,625EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305383 AgrOrtholog
BioCyc Gene G2FUF-42589 BioCyc
Ensembl Genes ENSRNOG00000005809 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007779 ENTREZGENE
  ENSRNOT00000007779.9 UniProtKB/TrEMBL
  ENSRNOT00000109610 ENTREZGENE
  ENSRNOT00000109610.2 UniProtKB/TrEMBL
Gene3D-CATH 2.70.50.30 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7382227 IMAGE-MGC_LOAD
InterPro Ig_E-set UniProtKB/TrEMBL
  Rho_GDI UniProtKB/TrEMBL
  RhoGDI_domain UniProtKB/TrEMBL
KEGG Report rno:362456 UniProtKB/TrEMBL
MGC_CLONE MGC:108926 IMAGE-MGC_LOAD
NCBI Gene 362456 ENTREZGENE
PANTHER RHO GDP-DISSOCIATION INHIBITOR 2 UniProtKB/TrEMBL
  Rho_GDI UniProtKB/TrEMBL
Pfam Rho_GDI UniProtKB/TrEMBL
PhenoGen Arhgdib PhenoGen
PRINTS RHOGDI UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005809 RatGTEx
Superfamily-SCOP Ig_E-set UniProtKB/TrEMBL
UniProt A0A8I5ZXI2 ENTREZGENE, UniProtKB/TrEMBL
  A6IMJ6 ENTREZGENE, UniProtKB/TrEMBL
  F7FLL0 ENTREZGENE, UniProtKB/TrEMBL
  Q5M860 ENTREZGENE
UniProt Secondary Q5M860 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-13 Arhgdib  Rho GDP dissociation inhibitor beta  Arhgdib  Rho, GDP dissociation inhibitor (GDI) beta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Arhgdib  Rho, GDP dissociation inhibitor (GDI) beta  Arhgdib_predicted  Rho, GDP dissociation inhibitor (GDI) beta (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Arhgdib_predicted  Rho, GDP dissociation inhibitor (GDI) beta (predicted)      Symbol and Name status set to approved 70820 APPROVED