Matn2 (matrilin 2) - Rat Genome Database

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Gene: Matn2 (matrilin 2) Rattus norvegicus
Analyze
Symbol: Matn2
Name: matrilin 2
RGD ID: 1305353
Description: Predicted to enable calcium ion binding activity. Predicted to act upstream of or within neurogenesis and response to axon injury. Predicted to be located in basement membrane. Predicted to be part of matrilin complex. Predicted to be active in extracellular matrix. Orthologous to human MATN2 (matrilin 2); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC299996; matrilin-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8767,380,140 - 67,529,767 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl767,380,168 - 67,530,153 (+)EnsemblGRCr8
mRatBN7.2765,494,996 - 65,644,613 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl765,494,834 - 65,645,113 (+)EnsemblmRatBN7.2
Rnor_6.0772,985,832 - 73,210,093 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl772,985,495 - 73,207,695 (+)Ensemblrn6Rnor6.0
Rnor_5.0773,288,317 - 73,377,215 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4769,715,611 - 69,880,723 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera762,599,934 - 62,745,634 (+)NCBICelera
RGSC_v3.1769,720,785 - 69,901,453 (+)NCBI
Cytogenetic Map7q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-acetamidofluorene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cytarabine  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Didecyldimethylammonium  (ISO)
dimethylarsinic acid  (EXP)
diquat  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
etoposide  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
irinotecan  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
maneb  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
rifampicin  (ISO)
rotenone  (ISO)
Rutecarpine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sotorasib  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
trametinib  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
valproic acid  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11102754   PMID:17513098   PMID:19295126   PMID:20551380   PMID:23979707   PMID:24006456   PMID:24895400   PMID:27068509   PMID:30624798  


Genomics

Comparative Map Data
Matn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8767,380,140 - 67,529,767 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl767,380,168 - 67,530,153 (+)EnsemblGRCr8
mRatBN7.2765,494,996 - 65,644,613 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl765,494,834 - 65,645,113 (+)EnsemblmRatBN7.2
Rnor_6.0772,985,832 - 73,210,093 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl772,985,495 - 73,207,695 (+)Ensemblrn6Rnor6.0
Rnor_5.0773,288,317 - 73,377,215 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4769,715,611 - 69,880,723 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera762,599,934 - 62,745,634 (+)NCBICelera
RGSC_v3.1769,720,785 - 69,901,453 (+)NCBI
Cytogenetic Map7q22NCBI
MATN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38897,869,064 - 98,036,724 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl897,868,840 - 98,036,769 (+)Ensemblhg38GRCh38
GRCh37898,881,292 - 99,048,952 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36898,950,487 - 99,118,124 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34898,969,380 - 99,117,616NCBI
Celera895,067,247 - 95,234,866 (+)NCBICelera
Cytogenetic Map8q22.1-q22.2NCBI
HuRef894,085,242 - 94,252,686 (+)NCBIHuRef
CHM1_1898,921,791 - 99,089,770 (+)NCBICHM1_1
T2T-CHM13v2.0898,994,565 - 99,162,197 (+)NCBIT2T-CHM13v2.0
Matn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391534,306,827 - 34,436,388 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1534,306,823 - 34,436,419 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381534,306,681 - 34,436,242 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1534,306,677 - 34,436,273 (+)Ensemblmm10GRCm38
MGSCv371534,236,436 - 34,365,997 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361534,251,271 - 34,380,827 (+)NCBIMGSCv36mm8
Celera1534,929,595 - 35,064,101 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1513.98NCBI
Matn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541713,646,405 - 13,759,520 (+)Ensembl
ChiLan1.0NW_00495541713,646,379 - 13,760,050 (+)NCBIChiLan1.0ChiLan1.0
MATN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27115,210,087 - 115,378,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1890,751,649 - 90,919,618 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0894,505,382 - 94,673,360 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1896,693,471 - 96,858,367 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl896,709,899 - 96,858,367 (+)EnsemblpanPan2panpan1.1
MATN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.113149,108 - 296,005 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl13149,095 - 295,994 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha13143,714 - 289,630 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.013297,878 - 444,393 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl13297,790 - 444,391 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.113141,999 - 288,151 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.013249,847 - 395,659 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.013255,721 - 401,923 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Matn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530337,341,947 - 37,479,100 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647044,768,046 - 44,905,054 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647044,768,048 - 44,905,204 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MATN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl438,744,034 - 38,915,088 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1438,744,025 - 38,915,083 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2441,732,770 - 41,874,322 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MATN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1892,787,508 - 92,951,908 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl892,787,740 - 92,952,224 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603947,790,205 - 47,955,777 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Matn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247635,063,772 - 5,198,026 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247635,050,507 - 5,198,653 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Matn2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11207,998,810 - 208,136,952 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Matn2
964 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:20
Count of miRNA genes:18
Interacting mature miRNAs:20
Transcripts:ENSRNOT00000008361
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72663805771638057Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74913799967614020Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73984590284845902Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73299870277998702Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73617876481178764Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73617876481178764Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
61439Cia8Collagen induced arthritis QTL 85.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)72718291472182914Rat

Markers in Region
RH129452  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2765,644,471 - 65,644,652 (+)MAPPERmRatBN7.2
Rnor_6.0773,209,540 - 73,209,720NCBIRnor6.0
Rnor_5.0773,377,074 - 73,377,254UniSTSRnor5.0
RGSC_v3.4769,882,765 - 69,882,945UniSTSRGSC3.4
Celera762,745,493 - 62,745,673UniSTS
Cytogenetic Map7q22UniSTS
MARC_10159-10160:996678914:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8767,526,646 - 67,527,057 (+)Marker Load Pipeline
mRatBN7.2765,641,492 - 65,641,903 (+)MAPPERmRatBN7.2
Rnor_6.0773,206,561 - 73,206,971NCBIRnor6.0
Rnor_5.0773,374,095 - 73,374,505UniSTSRnor5.0
RGSC_v3.4769,879,786 - 69,880,196UniSTSRGSC3.4
Celera762,742,514 - 62,742,924UniSTS
Cytogenetic Map7q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 158 91 90 59 78 59 6 336 178 11 137 75 92 31 14 14

Sequence


Ensembl Acc Id: ENSRNOT00000008361   ⟹   ENSRNOP00000008361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl767,380,203 - 67,530,153 (+)Ensembl
mRatBN7.2 Ensembl765,494,834 - 65,645,113 (+)Ensembl
Rnor_6.0 Ensembl772,985,495 - 73,207,695 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098862   ⟹   ENSRNOP00000094117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl767,380,168 - 67,439,809 (+)Ensembl
mRatBN7.2 Ensembl765,494,834 - 65,554,652 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100118   ⟹   ENSRNOP00000076610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl767,380,168 - 67,529,767 (+)Ensembl
mRatBN7.2 Ensembl765,494,834 - 65,645,113 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106400   ⟹   ENSRNOP00000092408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl767,380,171 - 67,529,730 (+)Ensembl
mRatBN7.2 Ensembl765,513,648 - 65,644,576 (+)Ensembl
RefSeq Acc Id: NM_001427155   ⟹   NP_001414084
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8767,380,168 - 67,529,767 (+)NCBI
RefSeq Acc Id: XM_017595223   ⟹   XP_017450712
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8767,380,140 - 67,529,734 (+)NCBI
mRatBN7.2765,495,100 - 65,644,613 (+)NCBI
Rnor_6.0772,985,832 - 73,209,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039080152   ⟹   XP_038936080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8767,380,140 - 67,529,734 (+)NCBI
mRatBN7.2765,495,100 - 65,644,613 (+)NCBI
RefSeq Acc Id: XP_017450712   ⟸   XM_017595223
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GJR4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008361   ⟸   ENSRNOT00000008361
RefSeq Acc Id: XP_038936080   ⟸   XM_039080152
- Peptide Label: isoform X2
- UniProtKB: A0A8I5YBE6 (UniProtKB/TrEMBL),   A0A8I6GJR4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000076610   ⟸   ENSRNOT00000100118
Ensembl Acc Id: ENSRNOP00000092408   ⟸   ENSRNOT00000106400
Ensembl Acc Id: ENSRNOP00000094117   ⟸   ENSRNOT00000098862
RefSeq Acc Id: NP_001414084   ⟸   NM_001427155
- Peptide Label: precursor
- UniProtKB: F1LXS3 (UniProtKB/TrEMBL),   A0A8I6GJR4 (UniProtKB/TrEMBL)
Protein Domains
VWFA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LXS3-F1-model_v2 AlphaFold F1LXS3 1-941 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695289
Promoter ID:EPDNEW_R5806
Type:initiation region
Name:Matn2_1
Description:matrilin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0772,985,701 - 72,985,761EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305353 AgrOrtholog
BioCyc Gene G2FUF-33687 BioCyc
Ensembl Genes ENSRNOG00000006060 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008361.9 UniProtKB/TrEMBL
  ENSRNOT00000098862.2 UniProtKB/TrEMBL
  ENSRNOT00000100118 ENTREZGENE
  ENSRNOT00000100118.2 UniProtKB/TrEMBL
  ENSRNOT00000106400 ENTREZGENE
  ENSRNOT00000106400.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.30 UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro ECM_Assembly_Org UniProtKB/TrEMBL
  EG-like_dom UniProtKB/TrEMBL
  EGF-like_Ca-bd UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  Growth_fac_rcpt_N_dom UniProtKB/TrEMBL
  Matrilin_cc_sf UniProtKB/TrEMBL
  Matrilin_coiled-coil_trimer UniProtKB/TrEMBL
  NOTCH1_EGF-like UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene 299996 ENTREZGENE
PANTHER COLLAGEN ALPHA UniProtKB/TrEMBL
  COLLAGEN ALPHA-1(VI) CHAIN-LIKE UniProtKB/TrEMBL
  PTHR24020:SF35 UniProtKB/TrEMBL
Pfam EGF_CA UniProtKB/TrEMBL
  FXa_inhibition UniProtKB/TrEMBL
  Matrilin_ccoil UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
PhenoGen Matn2 PhenoGen
PRINTS VWFADOMAIN UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  VWFA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006060 RatGTEx
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  Matrilin_ccoil UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
  SSF58002 UniProtKB/TrEMBL
UniProt A0A8I5YBE6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALH2_RAT UniProtKB/TrEMBL
  A0A8I6GJR4 ENTREZGENE, UniProtKB/TrEMBL
  F1LXS3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Matn2  matrilin 2   Matn2_predicted  matrilin 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Matn2_predicted  matrilin 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED