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Gene: Abce1 (ATP binding cassette subfamily E member 1) Rattus norvegicus

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Symbol:

Abce1

Name:

ATP binding cassette subfamily E member 1

RGD ID:

1305301

Description:

Predicted to enable several functions, including ATP binding activity; endoribonuclease inhibitor activity; and ribonucleoside triphosphate phosphatase activity. Predicted to be involved in translational initiation and translational termination. Predicted to act upstream of or within CAT tailing and protein ufmylation. Predicted to be located in mitochondrion. Predicted to be active in cytosolic ribosome. Human ortholog(s) of this gene implicated in human immunodeficiency virus infectious disease. Orthologous to human ABCE1 (ATP binding cassette subfamily E member 1); PARTICIPATES IN translation termination pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ATP-binding cassette sub-family E member 1; ATP-binding cassette, sub-family E (OABP), member 1; ATP-binding cassette, subfamily E (OABP), member 1; LOC361390; Oabp; Rns4i

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ABCE1 (ATP binding cassette subfamily E member 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Abce1 (ATP-binding cassette, sub-family E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Abce1 (ATP binding cassette subfamily E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ABCE1 (ATP binding cassette subfamily E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ABCE1 (ATP binding cassette subfamily E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Abce1 (ATP binding cassette subfamily E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ABCE1 (ATP binding cassette subfamily E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ABCE1 (ATP binding cassette subfamily E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Abce1 (ATP binding cassette subfamily E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Abce1 (ATP binding cassette subfamily E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NUP58 (nucleoporin 58)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ABCE1 (ATP binding cassette subfamily E member 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Abce1 (ATP-binding cassette, sub-family E member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	abce1 (ATP-binding cassette, sub-family E (OABP), member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RLI1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	abce-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	pix	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	pix	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	abce1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	abce1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	45,109,880 - 45,134,819 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	45,109,906 - 45,134,819 (+)	Ensembl				GRCr8
mRatBN7.2	19	28,205,566 - 28,230,489 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	28,205,555 - 28,230,489 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	35,065,938 - 35,090,817 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	35,720,012 - 35,744,891 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	37,954,884 - 37,979,761 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	31,867,960 - 31,892,863 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	31,867,981 - 31,892,863 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	42,771,943 - 42,796,838 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	30,093,741 - 30,118,625 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	27,713,656 - 27,738,540 (+)	NCBI		Celera
RGSC_v3.1	19	30,098,545 - 30,123,448 (+)	NCBI
Cytogenetic Map	19	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast carcinoma (ISO)

Colorectal Neoplasms (ISO)

hepatocellular carcinoma (ISO)

human immunodeficiency virus infectious disease (ISO)

lung adenocarcinoma (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

1-nitropyrene (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2,6-dimethoxyphenol (ISO)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clozapine (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

DDE (ISO)

decabromodiphenyl ether (ISO)

dicrotophos (ISO)

dicyclanil (ISO)

dimethyl sulfoxide (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethyl methanesulfonate (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

furfural (ISO)

gentamycin (EXP)

hexadecanoic acid (ISO)

ivermectin (ISO)

lead diacetate (EXP)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (EXP)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylparaben (ISO)

N-nitrosodiethylamine (EXP)

nefazodone (EXP)

nimesulide (EXP)

nitrates (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (EXP)

pinosylvin (ISO)

potassium chromate (ISO)

propiconazole (EXP,ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

succimer (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiophenes (ISO)

thiram (ISO)

trans-pinosylvin (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

negative regulation of endoribonuclease activity (ISO)

rescue of stalled cytosolic ribosome (IEA,ISO)

ribosome disassembly (IEA,ISO)

translational termination (IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

cytosol (IEA,ISO)

cytosolic ribosome (IEA,ISO)

mitochondrion (IEA,ISO)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IEA,ISO)

CTPase activity (IEA,ISO)

endoribonuclease inhibitor activity (IEA,ISO)

GTPase activity (IEA,ISO)

nucleotide binding (IEA)

protein binding (ISO)

ribonucleoside triphosphate phosphatase activity (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

translation termination pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Adenosine triphosphate-binding cassette transporter genes up-regulation in untreated hepatocellular carcinoma is mediated by cellular microRNAs.	Borel F, etal., Hepatology. 2012 Mar;55(3):821-32. doi: 10.1002/hep.24682. Epub 2012 Jan 13.
2.	An excess of rare genetic variation in ABCE1 among Yorubans and African-American individuals with HIV-1.	Crawford DC, etal., Genes Immun. 2009 Dec;10(8):715-21. doi: 10.1038/gene.2009.57. Epub 2009 Aug 6.
3.	Structural view on recycling of archaeal and eukaryotic ribosomes after canonical termination and ribosome rescue.	Franckenberg S, etal., Curr Opin Struct Biol. 2012 Dec;22(6):786-96. doi: 10.1016/j.sbi.2012.08.002. Epub 2012 Sep 29.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	The expression profile of ATP-binding cassette transporter genes in breast carcinoma.	Hlavac V, etal., Pharmacogenomics. 2013 Apr;14(5):515-29. doi: 10.2217/pgs.13.26.
6.	The role of ABC transporters in progression and clinical outcome of colorectal cancer.	Hlavata I, etal., Mutagenesis. 2012 Mar;27(2):187-96. doi: 10.1093/mutage/ger075.
7.	Rustless translation.	Hopfner KP, Biol Chem. 2012 Oct;393(10):1079-88. doi: 10.1515/hsz-2012-0196.
8.	[Expression and clinical significance of ABCE1 in human lung adenocarcinoma].	Liu DZ, etal., Zhonghua Zhong Liu Za Zhi. 2008 Apr;30(4):296-7.
9.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
10.	GOA pipeline	RGD automated data pipeline
11.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
13.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:7539425	PMID:11585831	PMID:19946888

Genomics

Comparative Map Data

Abce1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	45,109,880 - 45,134,819 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	45,109,906 - 45,134,819 (+)	Ensembl				GRCr8
mRatBN7.2	19	28,205,566 - 28,230,489 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	28,205,555 - 28,230,489 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	35,065,938 - 35,090,817 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	35,720,012 - 35,744,891 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	37,954,884 - 37,979,761 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	31,867,960 - 31,892,863 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	31,867,981 - 31,892,863 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	42,771,943 - 42,796,838 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	30,093,741 - 30,118,625 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	27,713,656 - 27,738,540 (+)	NCBI		Celera
RGSC_v3.1	19	30,098,545 - 30,123,448 (+)	NCBI
Cytogenetic Map	19	q11	NCBI

ABCE1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	145,098,311 - 145,129,524 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	145,098,248 - 145,129,524 (+)	Ensembl			hg38	GRCh38
GRCh37	4	146,019,463 - 146,050,676 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	146,238,606 - 146,270,126 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	4	146,377,090 - 146,407,936	NCBI
Celera	4	143,346,498 - 143,378,018 (+)	NCBI		Celera
Cytogenetic Map	4	q31.21	NCBI
HuRef	4	141,750,477 - 141,781,999 (+)	NCBI		HuRef
CHM1_1	4	145,995,426 - 146,026,945 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	148,415,703 - 148,446,916 (+)	NCBI		T2T-CHM13v2.0

Abce1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	80,410,071 - 80,438,369 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	80,410,091 - 80,438,369 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	79,683,442 - 79,711,740 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	79,683,462 - 79,711,740 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	82,207,341 - 82,235,639 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	82,579,717 - 82,607,693 (-)	NCBI		MGSCv36	mm8
Celera	8	83,959,260 - 83,987,564 (-)	NCBI		Celera
Cytogenetic Map	8	C1	NCBI
cM Map	8	37.77	NCBI

Abce1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955428	1,029,399 - 1,058,902 (+)	Ensembl
ChiLan1.0	NW_004955428	1,029,909 - 1,058,902 (+)	NCBI	ChiLan1.0	ChiLan1.0

ABCE1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	142,978,649 - 143,009,774 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	143,343,566 - 143,374,659 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	137,445,210 - 137,476,309 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	149,105,912 - 149,137,028 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	149,105,912 - 149,137,028 (+)	Ensembl			panPan2	panpan1.1

ABCE1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	43,781,838 - 43,813,529 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	43,781,885 - 43,811,883 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	44,173,958 - 44,205,596 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	44,450,427 - 44,482,362 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	44,450,466 - 44,486,656 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	43,723,783 - 43,755,384 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	43,809,854 - 43,842,008 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	44,074,527 - 44,106,452 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Abce1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	46,518,167 - 46,547,561 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936535	3,955,682 - 3,985,223 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936535	3,956,490 - 3,985,002 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ABCE1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	83,299,322 - 83,353,109 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	83,302,055 - 83,353,208 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	88,572,102 - 88,623,679 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ABCE1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	91,673,359 - 91,704,774 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	71,313,759 - 71,345,010 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Abce1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624853	4,065,206 - 4,085,777 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624853	4,059,271 - 4,087,313 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Abce1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	20,391,274 - 20,414,920 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Abce1
522 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	199
Count of miRNA genes:	138
Interacting mature miRNAs:	172
Transcripts:	ENSRNOT00000024753
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	7997750	52997750	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
61328	Eae8	Experimental allergic encephalomyelitis QTL 8	4		nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	19	41720609	49971820	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	31287532	51431640	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	7997750	52997750	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat
1354633	Bw28	Body weight QTL 28	6.04		body mass (VT:0001259)	body weight (CMO:0000012)	19	40727092	54856850	Rat
61407	Scl12	Serum cholesterol level QTL 12		0.001	blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	19	30099383	47207961	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	7997750	52997750	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	5748064	50748064	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	7997750	52997750	Rat
1354607	Gmadr1	Adrenal mass QTL 1	5.83		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	19	40727092	54856850	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
1354600	Salc2	Saline consumption QTL 2	9.91	0.001	drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	19	40727092	54856850	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat

Markers in Region

RH128283

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	28,230,091 - 28,230,294 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	31,892,466 - 31,892,668	NCBI	Rnor6.0
Rnor_5.0	19	42,796,441 - 42,796,643	UniSTS	Rnor5.0
RGSC_v3.4	19	30,118,228 - 30,118,430	UniSTS	RGSC3.4
Celera	19	27,738,143 - 27,738,345	UniSTS
Cytogenetic Map	19	q11	UniSTS

UniSTS:498297

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	28,216,505 - 28,218,026 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	31,878,882 - 31,880,402	NCBI	Rnor6.0
Rnor_5.0	19	42,782,857 - 42,784,377	UniSTS	Rnor5.0
RGSC_v3.4	19	30,104,642 - 30,106,162	UniSTS	RGSC3.4
Celera	19	27,724,557 - 27,726,077	UniSTS
Cytogenetic Map	19	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
22	13	79	209	91	90	59	152	59	6	464	273	21	188	102	121	31	33	33

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY724536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000024753 ⟹ ENSRNOP00000024753

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	45,109,906 - 45,134,819 (+)	Ensembl
mRatBN7.2 Ensembl	19	28,205,555 - 28,230,489 (+)	Ensembl
Rnor_6.0 Ensembl	19	31,867,981 - 31,892,863 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118958 ⟹ ENSRNOP00000087185

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	28,205,576 - 28,229,441 (+)	Ensembl

RefSeq Acc Id:

NM_001108446 ⟹ NP_001101916

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	45,109,935 - 45,134,819 (+)	NCBI
mRatBN7.2	19	28,205,605 - 28,230,489 (+)	NCBI
Rnor_6.0	19	31,867,981 - 31,892,863 (+)	NCBI
Rnor_5.0	19	42,771,943 - 42,796,838 (+)	NCBI
RGSC_v3.4	19	30,093,741 - 30,118,625 (+)	RGD
Celera	19	27,713,656 - 27,738,540 (+)	RGD

Sequence:

show sequence

TTGGCCGGTGGCGGTAAGAACACGCTGTGTGCTAAGACCTGACGGCTAGCCCTGCTTTGGCTAC
TGCACGGCCCATTGGAAGGGGACCGTTGTCTCCAGAAGAGCTGGATATTCTGTGTTACAATTAT
GGCAGACAAGTTAACAAGAATCGCTATTGTCAACCACGACAAATGCAAACCTAAAAAATGTCGA
CAGGAGTGCAAAAAAAGTTGCCCCGTAGTCCGGATGGGAAAATTATGCATAGAGGTTACACCCC
AGAGCAAAATAGCATGGATTTCTGAAACTCTTTGTATTGGTTGTGGTATTTGTATTAAGAAATG
TCCCTTTGGCGCCTTATCAATTGTCAATTTGCCAAGCAACTTGGAAAAAGAAACAACACATCGC
TATTGTGCCAATGCCTTCAAGCTTCACAGGTTGCCTATCCCTCGTCCAGGTGAAGTTTTGGGAT
TAGTTGGAACTAATGGTATTGGAAAGTCAACTGCTCTAAAAATTTTAGCCGGAAAGCAAAAGCC
AAACCTTGGAAAGTATGATGATCCGCCTGATTGGCAAGAGATTTTGACTTATTTCCGTGGATCT
GAATTACAAAATTACTTCACCAAGATTCTAGAAGATGACCTAAAAGCCATTATCAAACCTCAAT
ATGTAGATCAAATTCCCAAGGCAGCAAAGGGGACAGTGGGCTCTATTCTGGACCGAAAAGATGA
AACAAAGACACAGGCAGTCGTCTGTCAGCAGCTAGATCTGACTCACCTGAAGGAACGGAACGTG
GAAGATCTCTCCGGAGGGGAGCTGCAGAGATTCGCTTGTGCCGTGGTTTGCATACAGAAGGCTG
ACATTTTTATGTTTGATGAACCTTCTAGTTACCTTGATGTCAAGCAACGTTTAAAGGCTGCCAT
TACTATTCGATCTCTAATAAATCCAGATAGATACATCATTGTGGTGGAGCATGATCTAAGTGTA
CTAGACTATCTGTCTGACTTCATCTGCTGTCTGTATGGTGTGCCAAGTGCTTATGGTGTTGTCA
CTATGCCTTTTAGTGTGAGAGAAGGCATAAATATATTTTTGGATGGCTATGTTCCAACAGAGAA
CTTGAGGTTCAGGGATGCATCACTTGTCTTTAAGGTAGCTGAGACAGCAAATGAAGAAGAAGTT
AAAAAGATGTGCATGTATAAATACCCCGGGATGAAGAAGAAGATGGGCGAGTTCGAGCTAGCAA
TTGTAGCTGGAGAGTTCACTGACTCAGAAATCATGGTGATGCTGGGGGAAAACGGTACAGGTAA
AACCACATTTATCAGAATGCTTGCTGGAAGGCTTAAGCCAGACGAAGGAGGAGAAGTACCAGTT
CTAAATGTCAGTTATAAGCCACAGAAAATCAGTCCCAAATCAACAGGAAGTGTTCGCCAGTTAC
TACATGAAAAGATCAGAGATGCTTACACTCATCCACAGTTTGTGACTGACGTAATGAAGCCCCT
ACAAATTGAAAACATCATTGACCAAGAGGTGCAGACGTTGTCTGGTGGTGAACTGCAGCGTGTA
GCTTTAGCCCTTTGTCTGGGCAAGCCTGCTGACGTCTATTTAATTGACGAGCCATCTGCATATT
TGGATTCTGAGCAAAGATTAATGGCAGCTCGGGTCGTCAAACGTTTCATTCTCCATGCAAAGAA
GACAGCTTTTGTTGTAGAGCATGACTTCATCATGGCCACCTACCTAGCAGATCGCGTCATCGTT
TTTGATGGTGTTCCTTCTAAGAACACAGTTGCAAACAGTCCTCAGACTCTTTTGGCTGGCATGA
ACAAATTTTTGTCTCAGCTCGAAATTACGTTCAGAAGAGACCCCAACAATTACAGACCGAGGAT
AAATAAGCTCAATTCAATCAAGGATGTAGAACAAAAGAAGAGTGGAAACTACTTTTTCTTGGAT
GATTAGATTGAATCTGAACTTATCAATAAGCCATTTACTTACTGGGATTTTTATCATATAAAAC
TTTAATCAGGTTTTATGGCCCCACATACTCTGGAGCTTGAAGTATGATTTTCTTAATGTGACAT
CGAAAGCCAGTTGTCTTGTGAAGTCTTGTTTAAGAGCTATTCTGTTCTTAACATTAAACCTTTG
TGCATACCACACTAACATGGAGACATTTCAAATATCACTTACCTCCAGATTATCACGATCTGTG
GGGAGATTTTCAGTTGTGTATTATATTCATGTACCAGATCCTTCCTGGTGTTGCCCATCTTTGA
AATCTTGCATACAATCTGCACTTGCCTGTTTGCTAAGTGTACCAGTCTAATGGACTGCCCTCGT
CTACAAGCCAGTCACAAACTTACTGCTGCAGTCCGTCCGAAGCACCAGGGCTGCATCTGCTACT
TGGTTCAGTCTGTGCACTGTGTTTTCTATCAGTGTGTGCTTCTGAGGAACGGTGTCTGCTACAA
ACACCGTTGTTGAAAGATGTTTATGACCAACTTATGCATTGTTTTTAATGGGTTTTTGGTGCTT
TTGAACATTTGTCAAAAATTATTTCAGTACCCTAATTTAACTGGTTTTTTTTTTTGTTCTTACA
TTCTACAAGCTCTATAACAACATTCACAGTAATGTTACTTTTATAAATATATATATAATCACTG
ATCAAGATTAGGGAGAAAACATTTCTGAAGAATATTTGCTTCCTGTAAAACCATAGGCTTGGGC
TGAGGAGATGGTTCAATCAGTAAAGTACAAGCCACTCATTCTTGAGAACCGCATGTGAGACTTA
GTGGGACTCGCTAATACCAGCCAATCTGGGAGTGAGGTCAAGCAGATCCATACAGCTCACTGGC
CGGCCAGCCTAACAGTGCTCTGGCCCCAACACAGTGTACACACACACACACACACACACACACA
CACACACACACACACACACACACCCTACAGATACAGTCTTTATAGTTGGTGCCTACGTATCTGG
ATTTTAGGGGTTTAGTTTTGTTTTATTTTGAGACAGTGTGTCCTACAGCCCAAATTGGCCTCAA
ATTAGTTATTGAATTTCTCAGCCCATGCCTAGGCTTAGGTTACGCAGTACTGAGGATCAAGCCC
AAGGCTTGGTGTGTCCTAGGCAAGCACTCTAACAACTGAGCTACATCCCAGCCCTACATGTTTC
TAGACTACAGCAGCCAAGGACACCCTTAACCCCTGCGGGGAGCCTGGGCAAAGGCAGTAAGGCG
TCCATTGCTGCACTGCGCACGCACATGTAGGTTTATGCCCAACTGGAATTATAAGGGCCGTGGA
CTACAACCAACAATGCAAGCAGAACTTTAAATAACAGATCTTGATTAATTTGGAAACAATGATA
GTTTGTTCTGAGTGCAACTCATTAGGCCTTCTAAAAATGAATTTATATATAATCCATAAATATC
TGTTGTAAAAGAACGCAAATCTGCAGAAGTATATGGAATAAAAACTCTCCTTCATCAGTT

hide sequence

RefSeq Acc Id:

XM_006255407 ⟹ XP_006255469

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	45,109,880 - 45,134,816 (+)	NCBI
mRatBN7.2	19	28,205,566 - 28,230,486 (+)	NCBI
Rnor_6.0	19	31,867,960 - 31,892,860 (+)	NCBI
Rnor_5.0	19	42,771,943 - 42,796,838 (+)	NCBI

Sequence:

show sequence

CGGCGGCTGTGCACCGCCATCTTGGCCGGTGGCGGTAAGAACACGCTGTGTGCTAAGACCTGAC
GGCTAGCCCTGCTTTGGCTACTGCACGGCCCATTGGAAGGGGACCGTTGTCTCCAGAGCTGGAT
ATTCTGTGTTACAATTATGGCAGACAAGTTAACAAGAATCGCTATTGTCAACCACGACAAATGC
AAACCTAAAAAATGTCGACAGGAGTGCAAAAAAAGTTGCCCCGTAGTCCGGATGGGAAAATTAT
GCATAGAGGTTACACCCCAGAGCAAAATAGCATGGATTTCTGAAACTCTTTGTATTGGTTGTGG
TATTTGTATTAAGAAATGTCCCTTTGGCGCCTTATCAATTGTCAATTTGCCAAGCAACTTGGAA
AAAGAAACAACACATCGCTATTGTGCCAATGCCTTCAAGCTTCACAGGTTGCCTATCCCTCGTC
CAGGTGAAGTTTTGGGATTAGTTGGAACTAATGGTATTGGAAAGTCAACTGCTCTAAAAATTTT
AGCCGGAAAGCAAAAGCCAAACCTTGGAAAGTATGATGATCCGCCTGATTGGCAAGAGATTTTG
ACTTATTTCCGTGGATCTGAATTACAAAATTACTTCACCAAGATTCTAGAAGATGACCTAAAAG
CCATTATCAAACCTCAATATGTAGATCAAATTCCCAAGGCAGCAAAGGGGACAGTGGGCTCTAT
TCTGGACCGAAAAGATGAAACAAAGACACAGGCAGTCGTCTGTCAGCAGCTAGATCTGACTCAC
CTGAAGGAACGGAACGTGGAAGATCTCTCCGGAGGGGAGCTGCAGAGATTCGCTTGTGCCGTGG
TTTGCATACAGAAGGCTGACATTTTTATGTTTGATGAACCTTCTAGTTACCTTGATGTCAAGCA
ACGTTTAAAGGCTGCCATTACTATTCGATCTCTAATAAATCCAGATAGATACATCATTGTGGTG
GAGCATGATCTAAGTGTACTAGACTATCTGTCTGACTTCATCTGCTGTCTGTATGGTGTGCCAA
GTGCTTATGGTGTTGTCACTATGCCTTTTAGTGTGAGAGAAGGCATAAATATATTTTTGGATGG
CTATGTTCCAACAGAGAACTTGAGGTTCAGGGATGCATCACTTGTCTTTAAGGTAGCTGAGACA
GCAAATGAAGAAGAAGTTAAAAAGATGTGCATGTATAAATACCCCGGGATGAAGAAGAAGATGG
GCGAGTTCGAGCTAGCAATTGTAGCTGGAGAGTTCACTGACTCAGAAATCATGGTGATGCTGGG
GGAAAACGGTACAGGTAAAACCACATTTATCAGAATGCTTGCTGGAAGGCTTAAGCCAGACGAA
GGAGGAGAAGTACCAGTTCTAAATGTCAGTTATAAGCCACAGAAAATCAGTCCCAAATCAACAG
GAAGTGTTCGCCAGTTACTACATGAAAAGATCAGAGATGCTTACACTCATCCACAGTTTGTGAC
TGACGTAATGAAGCCCCTACAAATTGAAAACATCATTGACCAAGAGGTGCAGACGTTGTCTGGT
GGTGAACTGCAGCGTGTAGCTTTAGCCCTTTGTCTGGGCAAGCCTGCTGACGTCTATTTAATTG
ACGAGCCATCTGCATATTTGGATTCTGAGCAAAGATTAATGGCAGCTCGGGTCGTCAAACGTTT
CATTCTCCATGCAAAGAAGACAGCTTTTGTTGTAGAGCATGACTTCATCATGGCCACCTACCTA
GCAGATCGCGTCATCGTTTTTGATGGTGTTCCTTCTAAGAACACAGTTGCAAACAGTCCTCAGA
CTCTTTTGGCTGGCATGAACAAATTTTTGTCTCAGCTCGAAATTACGTTCAGAAGAGACCCCAA
CAATTACAGACCGAGGATAAATAAGCTCAATTCAATCAAGGATGTAGAACAAAAGAAGAGTGGA
AACTACTTTTTCTTGGATGATTAGATTGAATCTGAACTTATCAATAAGCCATTTACTTACTGGG
ATTTTTATCATATAAAACTTTAATCAGGTTTTATGGCCCCACATACTCTGGAGCTTGAAGTATG
ATTTTCTTAATGTGACATCGAAAGCCAGTTGTCTTGTGAAGTCTTGTTTAAGAGCTATTCTGTT
CTTAACATTAAACCTTTGTGCATACCACACTAACATGGAGACATTTCAAATATCACTTACCTCC
AGATTATCACGATCTGTGGGGAGATTTTCAGTTGTGTATTATATTCATGTACCAGATCCTTCCT
GGTGTTGCCCATCTTTGAAATCTTGCATACAATCTGCACTTGCCTGTTTGCTAAGTGTACCAGT
CTAATGGACTGCCCTCGTCTACAAGCCAGTCACAAACTTACTGCTGCAGTCCGTCCGAAGCACC
AGGGCTGCATCTGCTACTTGGTTCAGTCTGTGCACTGTGTTTTCTATCAGTGTGTGCTTCTGAG
GAACGGTGTCTGCTACAAACACCGTTGTTGAAAGATGTTTATGACCAACTTATGCATTGTTTTT
AATGGGTTTTTGGTGCTTTTGAACATTTGTCAAAAATTATTTCAGTACCCTAATTTAACTGGTT
TTTTTTTTTGTTCTTACATTCTACAAGCTCTATAACAACATTCACAGTAATGTTACTTTTATAA
ATATATATATAATCACTGATCAAGATTAGGGAGAAAACATTTCTGAAGAATATTTGCTTCCTGT
AAAACCATAGGCTTGGGCTGAGGAGATGGTTCAATCAGTAAAGTACAAGCCACTCATTCTTGAG
AACCGCATGTGAGACTTAGTGGGACTCGCTAATACCAGCCAATCTGGGAGTGAGGTCAAGCAGA
TCCATACAGCTCACTGGCCGGCCAGCCTAACAGTGCTCTGGCCCCAACACAGTGCACACACACA
CACACACACACACACACACACACACACACACACACACACCCTACAGATACAGTCTTTATAGTTG
GTGCCTACGTATCTGGATTTTAGGGGTTTAGTTTTGTTTTATTTTGAGACAGTGTGTCCTACAG
CCCAAATTGGCCTCAAATTAGTTATTGAATTTCTCAGCCCATGCCTAGGCTTAGGTTACGCAGT
ACTGAGGATCAAGCCCAAGGCTTGGTGTGTCCTAGGCAAGCACTCTAACAACTGAGCTACATCC
CAGCCCTACATGTTTCTAGACTACAGCAGCCAAGGACACCCTTAACCCCTGCGGGGAGCCTGGG
CAAAGGCAGTAAGGCGTCCATTGCTGCACTGCGCACGCACATGTAGGTTTATGCCCAACTGGAA
TTATAAGGGCCGTGGACTACAACCAACAATGCAAGCAGAACTTTAAATAACAGATCTTGATTAA
TTTGGAAACAATGATAGTTTGTTCTGAGTGCAACTCATTAGGCCTTCTAAAAATGAATTTATAT
ATAATCCATAAATATCTGTTGTAAAAGAACGCAAATCTGCAGAAGTATATGGAATAAAAACTCT
CCTTCATCA

hide sequence

RefSeq Acc Id:

XM_063278120 ⟹ XP_063134190

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	45,114,406 - 45,134,816 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101916	(Get FASTA)	NCBI Sequence Viewer
	XP_006255469	(Get FASTA)	NCBI Sequence Viewer
	XP_063134190	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL92306	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024753
	ENSRNOP00000024753.7

RefSeq Acc Id:

NP_001101916 ⟸ NM_001108446

- UniProtKB:

A6IYH8 (UniProtKB/TrEMBL), A0A8I6GEV9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKK
CPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAGKQK
PNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAAKGTVGSILDRKD
ETKTQAVVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSSYLDVKQRLKAA
ITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDGYVPTE
NLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEFELAIVAGEFTDSEIMVMLGENGTG
KTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGSVRQLLHEKIRDAYTHPQFVTDVMKP
LQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRLMAARVVKRFILHAK
KTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPR
INKLNSIKDVEQKKSGNYFFLDD

hide sequence

RefSeq Acc Id:	XP_006255469 ⟸ XM_006255407
- Peptide Label:	isoform X1
- UniProtKB:	A6IYH8 (UniProtKB/TrEMBL), A0A8I6GEV9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKK CPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAGKQK PNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAAKGTVGSILDRKD ETKTQAVVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSSYLDVKQRLKAA ITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDGYVPTE NLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEFELAIVAGEFTDSEIMVMLGENGTG KTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGSVRQLLHEKIRDAYTHPQFVTDVMKP LQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRLMAARVVKRFILHAK KTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPR INKLNSIKDVEQKKSGNYFFLDD hide sequence

Ensembl Acc Id:

ENSRNOP00000024753 ⟸ ENSRNOT00000024753

Ensembl Acc Id:

ENSRNOP00000087185 ⟸ ENSRNOT00000118958

RefSeq Acc Id:	XP_063134190 ⟸ XM_063278120
- Peptide Label:	isoform X2

Protein Domains

4Fe-4S ferredoxin-type ABC transporter

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZD23-F1-model_v2	AlphaFold	D3ZD23	1-599	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701050

Promoter ID:

EPDNEW_R11573

Type:

initiation region

Name:

Abce1_1

Description:

ATP binding cassette subfamily E member 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	31,867,959 - 31,868,019	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305301	AgrOrtholog
BioCyc Gene	G2FUF-5959	BioCyc
Ensembl Genes	ENSRNOG00000018345	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000024753	ENTREZGENE
	ENSRNOT00000024753.8	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	4Fe4S_Fe-S-bd	UniProtKB/TrEMBL
	4Fe4S_Fe_S_CS	UniProtKB/TrEMBL
	ABC_E	UniProtKB/TrEMBL
	ABC_transporter-like	UniProtKB/TrEMBL
	ABC_transporter_CS	UniProtKB/TrEMBL
	ATPase_AAA+_core	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	RLI_dom_1	UniProtKB/TrEMBL
	RNaseL-inhib_metal-bd_dom	UniProtKB/TrEMBL
KEGG Report	rno:361390	UniProtKB/TrEMBL
NCBI Gene	361390	ENTREZGENE
PANTHER	PTHR19248	UniProtKB/TrEMBL
Pfam	ABC_tran	UniProtKB/TrEMBL
	Fer4	UniProtKB/TrEMBL
	RLI	UniProtKB/TrEMBL
PhenoGen	Abce1	PhenoGen
PRINTS	ABCEFAMILY	UniProtKB/TrEMBL
PROSITE	4FE4S_FER_1	UniProtKB/TrEMBL
	4FE4S_FER_2	UniProtKB/TrEMBL
	ABC_TRANSPORTER_1	UniProtKB/TrEMBL
	ABC_TRANSPORTER_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018345	RatGTEx
SMART	AAA	UniProtKB/TrEMBL
Superfamily-SCOP	4Fe-4S ferredoxins	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8I6GEV9	ENTREZGENE
	A6IYH8	ENTREZGENE, UniProtKB/TrEMBL
	D3ZD23_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-09	Abce1	ATP binding cassette subfamily E member 1	Abce1	ATP-binding cassette, subfamily E (OABP), member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-11-16	Abce1	ATP-binding cassette, subfamily E (OABP), member 1	Abce1	ATP-binding cassette, sub-family E (OABP), member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Abce1	ATP-binding cassette, sub-family E (OABP), member 1	Abce1_predicted	ATP-binding cassette, sub-family E (OABP), member 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Abce1_predicted	ATP-binding cassette, sub-family E (OABP), member 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
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