Rnf152 (ring finger protein 152) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Rnf152 (ring finger protein 152) Rattus norvegicus
Analyze
Symbol: Rnf152
Name: ring finger protein 152
RGD ID: 1305251
Description: Predicted to enable small GTPase binding activity and ubiquitin protein ligase activity. Predicted to be involved in several processes, including cellular response to amino acid starvation; negative regulation of TORC1 signaling; and protein ubiquitination. Predicted to act upstream of or within several processes, including TORC1 signaling; positive regulation of TORC1 signaling; and regulation of translational initiation. Predicted to be located in lysosome and organelle membrane. Predicted to be active in lysosomal membrane. Orthologous to human RNF152 (ring finger protein 152); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E3 ubiquitin-protein ligase RNF152; LOC293561; RING-type E3 ubiquitin transferase RNF152
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81321,838,634 - 21,918,000 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1321,838,075 - 21,962,703 (-)EnsemblGRCr8
mRatBN7.21321,324,039 - 21,403,405 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1321,323,824 - 21,403,113 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1321,682,338 - 21,754,542 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01322,967,108 - 23,039,318 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01321,650,986 - 21,723,192 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01325,183,295 - 25,262,785 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1325,186,106 - 25,262,469 (-)Ensemblrn6Rnor6.0
Rnor_5.01330,348,244 - 30,424,578 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41311,309,564 - 11,386,370 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1321,217,570 - 21,292,869 (-)NCBICelera
RGSC_v3.11311,313,427 - 11,384,958 (-)NCBI
Cytogenetic Map13p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
decabromodiphenyl ether  (EXP)
dimethyl sulfoxide  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethylparaben  (ISO)
gentamycin  (EXP)
GW 4064  (ISO)
hexadecanoic acid  (ISO)
hydralazine  (ISO)
lipopolysaccharide  (ISO)
methoxychlor  (EXP)
methylisothiazolinone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
rac-lactic acid  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
Theaflavin 3,3'-digallate  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
torcetrapib  (ISO)
trichloroethene  (EXP)
Triptolide  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
lysosomal membrane  (IBA,IEA,ISO,ISS)
lysosome  (IEA,ISO,ISS)
organelle membrane  (ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21203937   PMID:25936802  


Genomics

Comparative Map Data
Rnf152
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81321,838,634 - 21,918,000 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1321,838,075 - 21,962,703 (-)EnsemblGRCr8
mRatBN7.21321,324,039 - 21,403,405 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1321,323,824 - 21,403,113 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1321,682,338 - 21,754,542 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01322,967,108 - 23,039,318 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01321,650,986 - 21,723,192 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01325,183,295 - 25,262,785 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1325,186,106 - 25,262,469 (-)Ensemblrn6Rnor6.0
Rnor_5.01330,348,244 - 30,424,578 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41311,309,564 - 11,386,370 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1321,217,570 - 21,292,869 (-)NCBICelera
RGSC_v3.11311,313,427 - 11,384,958 (-)NCBI
Cytogenetic Map13p11NCBI
RNF152
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381861,808,067 - 61,894,412 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1861,808,067 - 61,895,097 (-)Ensemblhg38GRCh38
GRCh371859,475,300 - 59,560,240 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361857,633,284 - 57,711,284 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341857,631,582 - 57,711,284NCBI
Celera1856,201,350 - 56,279,446 (-)NCBICelera
Cytogenetic Map18q21.33NCBI
HuRef1856,192,127 - 56,270,119 (-)NCBIHuRef
CHM1_11859,477,933 - 59,555,898 (-)NCBICHM1_1
T2T-CHM13v2.01862,011,910 - 62,098,286 (-)NCBIT2T-CHM13v2.0
Rnf152
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391105,204,642 - 105,284,665 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1105,204,639 - 105,284,435 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381105,276,917 - 105,356,991 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1105,276,914 - 105,356,710 (-)Ensemblmm10GRCm38
MGSCv371107,173,494 - 107,253,287 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361107,107,478 - 107,184,217 (-)NCBIMGSCv36mm8
Celera1108,129,211 - 108,211,157 (-)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map149.45NCBI
Rnf152
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540245,774,565 - 45,846,518 (-)Ensembl
ChiLan1.0NW_00495540245,774,565 - 45,846,649 (-)NCBIChiLan1.0ChiLan1.0
RNF152
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21779,333,721 - 79,415,751 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11865,026,351 - 65,108,321 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01855,180,955 - 55,264,164 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11858,505,195 - 58,585,326 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1858,507,684 - 58,508,295 (-)EnsemblpanPan2panpan1.1
RNF152
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1114,914,508 - 15,001,843 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl114,985,769 - 14,986,380 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha115,881,184 - 15,969,600 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0114,775,107 - 14,863,678 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1114,809,969 - 14,898,424 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0114,743,600 - 14,831,933 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0114,990,574 - 15,078,991 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rnf152
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494428,085,875 - 28,182,704 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364973,420,724 - 3,421,335 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364973,357,464 - 3,421,813 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF152
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1159,530,623 - 159,601,981 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11159,529,879 - 159,606,031 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21177,064,482 - 177,065,276 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNF152
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11817,872,141 - 17,952,989 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1817,949,253 - 17,949,864 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660607,729,638 - 7,815,610 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf152
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247927,448,112 - 7,536,776 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247927,448,110 - 7,571,467 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rnf152
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11090,412,687 - 90,482,462 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rnf152
460 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:765
Count of miRNA genes:282
Interacting mature miRNAs:386
Transcripts:ENSRNOT00000019921
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134785618Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131244842148744906Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131228551734884386Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13308875548088755Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131244842147969993Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13600200837088115Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
2303031Bp326Blood pressure QTL 326arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131228551723516549Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13143736554Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131228551734884386Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13600200847359539Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13134785618Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat

Markers in Region
AU048745  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5q32UniSTS
Cytogenetic Map13q24UniSTS
Cytogenetic Map6q32UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map16p14UniSTS
Cytogenetic Map13q26UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map7q11UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map5q21UniSTS
Cytogenetic Map4q24UniSTS
Cytogenetic Map2q11UniSTS
Cytogenetic Map1q54UniSTS
Cytogenetic Map1q36UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map13q13UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic Map8q31UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map13p13UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map10q31UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map5q36UniSTS
Cytogenetic Map3p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 67 161 91 90 59 73 59 6 336 172 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000019921   ⟹   ENSRNOP00000019921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1321,838,786 - 21,919,663 (-)Ensembl
mRatBN7.2 Ensembl1321,326,850 - 21,403,100 (-)Ensembl
Rnor_6.0 Ensembl1325,186,106 - 25,262,469 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102604   ⟹   ENSRNOP00000093936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1321,838,111 - 21,917,847 (-)Ensembl
mRatBN7.2 Ensembl1321,323,824 - 21,403,113 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105259   ⟹   ENSRNOP00000091301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1321,838,500 - 21,962,703 (-)Ensembl
mRatBN7.2 Ensembl1321,323,943 - 21,355,832 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105662   ⟹   ENSRNOP00000097172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1321,838,111 - 21,917,847 (-)Ensembl
mRatBN7.2 Ensembl1321,323,943 - 21,403,113 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107961   ⟹   ENSRNOP00000095982
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1321,838,075 - 21,918,033 (-)Ensembl
mRatBN7.2 Ensembl1321,323,824 - 21,383,901 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119715   ⟹   ENSRNOP00000093523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1321,838,636 - 21,916,176 (-)Ensembl
mRatBN7.2 Ensembl1321,324,039 - 21,339,127 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000132425   ⟹   ENSRNOP00000102165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1321,838,111 - 21,917,847 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000149140   ⟹   ENSRNOP00000105596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1321,838,500 - 21,917,981 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000164598   ⟹   ENSRNOP00000099755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1321,838,786 - 21,919,663 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000166733   ⟹   ENSRNOP00000109601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1321,838,658 - 21,878,670 (-)Ensembl
RefSeq Acc Id: NM_001106305   ⟹   NP_001099775
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81321,841,445 - 21,917,692 (-)NCBI
mRatBN7.21321,326,850 - 21,403,100 (-)NCBI
Rnor_6.01325,186,106 - 25,262,469 (-)NCBI
Rnor_5.01330,348,244 - 30,424,578 (-)NCBI
RGSC_v3.41311,309,564 - 11,386,370 (-)RGD
Celera1321,217,570 - 21,292,869 (-)RGD
Sequence:
RefSeq Acc Id: XM_017598766   ⟹   XP_017454255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81321,838,634 - 21,917,760 (-)NCBI
mRatBN7.21321,324,039 - 21,403,183 (-)NCBI
Rnor_6.01325,190,047 - 25,262,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598767   ⟹   XP_017454256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81321,838,634 - 21,917,760 (-)NCBI
mRatBN7.21321,324,039 - 21,403,184 (-)NCBI
Rnor_6.01325,190,047 - 25,262,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598768   ⟹   XP_017454257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81321,838,634 - 21,917,760 (-)NCBI
mRatBN7.21321,324,039 - 21,403,184 (-)NCBI
Rnor_6.01325,190,047 - 25,262,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598769   ⟹   XP_017454258
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81321,838,634 - 21,918,000 (-)NCBI
mRatBN7.21321,324,039 - 21,403,405 (-)NCBI
Rnor_6.01325,190,047 - 25,262,785 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001099775   ⟸   NM_001106305
- UniProtKB: D4A723 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017454258   ⟸   XM_017598769
- Peptide Label: isoform X1
- UniProtKB: D4A723 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017454255   ⟸   XM_017598766
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017454257   ⟸   XM_017598768
- Peptide Label: isoform X1
- UniProtKB: D4A723 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017454256   ⟸   XM_017598767
- Peptide Label: isoform X1
- UniProtKB: D4A723 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019921   ⟸   ENSRNOT00000019921
Ensembl Acc Id: ENSRNOP00000095982   ⟸   ENSRNOT00000107961
Ensembl Acc Id: ENSRNOP00000093523   ⟸   ENSRNOT00000119715
Ensembl Acc Id: ENSRNOP00000093936   ⟸   ENSRNOT00000102604
Ensembl Acc Id: ENSRNOP00000091301   ⟸   ENSRNOT00000105259
Ensembl Acc Id: ENSRNOP00000097172   ⟸   ENSRNOT00000105662
Ensembl Acc Id: ENSRNOP00000099755   ⟸   ENSRNOT00000164598
Ensembl Acc Id: ENSRNOP00000102165   ⟸   ENSRNOT00000132425
Ensembl Acc Id: ENSRNOP00000105596   ⟸   ENSRNOT00000149140
Ensembl Acc Id: ENSRNOP00000109601   ⟸   ENSRNOT00000166733

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A723-F1-model_v2 AlphaFold D4A723 1-203 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698744
Promoter ID:EPDNEW_R9269
Type:initiation region
Name:Rnf152_1
Description:ring finger protein 152
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01325,262,468 - 25,262,528EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305251 AgrOrtholog
BioCyc Gene G2FUF-18635 BioCyc
Ensembl Genes ENSRNOG00000014859 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000019921.6 UniProtKB/Swiss-Prot
  ENSRNOT00000102604 ENTREZGENE
  ENSRNOT00000102604.1 UniProtKB/Swiss-Prot
  ENSRNOT00000105259.1 UniProtKB/Swiss-Prot
  ENSRNOT00000105662 ENTREZGENE
  ENSRNOT00000105662.1 UniProtKB/Swiss-Prot
  ENSRNOT00000107961 ENTREZGENE
  ENSRNOT00000107961.1 UniProtKB/Swiss-Prot
  ENSRNOT00000119715.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot
InterPro RNF152 UniProtKB/Swiss-Prot
  RNF152_C UniProtKB/Swiss-Prot
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
KEGG Report rno:293561 UniProtKB/Swiss-Prot
NCBI Gene 293561 ENTREZGENE
PANTHER PTHR25464:SF1 UniProtKB/Swiss-Prot
  TRIPARTITE MOTIF-CONTAINING PROTEIN 2-LIKE PROTEIN UniProtKB/Swiss-Prot
Pfam RNF152_C UniProtKB/Swiss-Prot
  zf-RING_5 UniProtKB/Swiss-Prot
PhenoGen Rnf152 PhenoGen
PROSITE ZF_RING_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000014859 RatGTEx
SMART RING UniProtKB/Swiss-Prot
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot
UniProt D4A723 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rnf152  ring finger protein 152   Rnf152_predicted  ring finger protein 152 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rnf152_predicted  ring finger protein 152 (predicted)      Symbol and Name status set to approved 70820 APPROVED