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Gene: Usp42 (ubiquitin specific peptidase 42) Rattus norvegicus

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Symbol:

Usp42

Name:

ubiquitin specific peptidase 42

RGD ID:

1305231

Description:

Predicted to enable cysteine-type deubiquitinase activity. Predicted to be involved in protein deubiquitination; regulation of apoptotic process; and regulation of protein stability. Predicted to be active in cytosol and nucleus. Orthologous to human USP42 (ubiquitin specific peptidase 42); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

deubiquitinating enzyme 42; LOC288482; ubiquitin carboxyl-terminal hydrolase 42; ubiquitin specific protease 42; ubiquitin thioesterase 42; ubiquitin thiolesterase 42; ubiquitin-specific-processing protease 42

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	USP42 (ubiquitin specific peptidase 42)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Usp42 (ubiquitin specific peptidase 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	USP42 (ubiquitin specific peptidase 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	USP42 (ubiquitin specific peptidase 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Usp42 (ubiquitin specific peptidase 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	USP42 (ubiquitin specific peptidase 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	USP42 (ubiquitin specific peptidase 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Usp42 (ubiquitin specific peptidase 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Usp42 (ubiquitin specific peptidase 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	POR (cytochrome p450 oxidoreductase)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	USP42 (ubiquitin specific peptidase 42)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Usp42 (ubiquitin specific peptidase 42)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	usp42 (ubiquitin specific peptidase 42)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	usp42 (ubiquitin specific peptidase 42)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	UBP10	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	scny	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	scny	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	usp42	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	usp42	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	15,903,110 - 15,954,429 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	15,931,703 - 15,953,711 (+)	Ensembl				GRCr8
mRatBN7.2	12	10,800,864 - 10,840,785 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	10,802,581 - 10,840,785 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	11,629,499 - 11,648,040 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	12,252,791 - 12,271,334 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	11,276,762 - 11,295,321 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	12,840,131 - 12,878,207 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	12,859,661 - 12,877,495 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	14,881,194 - 14,922,553 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	11,151,534 - 11,170,068 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	12,619,047 - 12,637,594 (+)	NCBI		Celera
RGSC_v3.1	12	11,181,461 - 11,196,973 (+)	NCBI
Cytogenetic Map	12	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP)

amitrole (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

Butylbenzyl phthalate (ISO)

caffeine (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

formaldehyde (ISO)

FR900359 (ISO)

indometacin (ISO)

lead diacetate (ISO)

nitrofen (EXP)

paracetamol (ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium arsenite (EXP)

temozolomide (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

torcetrapib (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triticonazole (EXP)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

protein deubiquitination (IEA,ISO,ISS)

proteolysis (IEA)

regulation of apoptotic process (IBA)

regulation of protein stability (IBA)

spermatogenesis (IEA)

Cellular Component

cytosol (IBA)

nucleus (IBA)

Molecular Function

cysteine-type deubiquitinase activity (IBA,IEA,ISO)

cysteine-type peptidase activity (IEA)

hydrolase activity (IEA)

peptidase activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:14715245	PMID:16904385

Genomics

Comparative Map Data

Usp42
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	15,903,110 - 15,954,429 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	15,931,703 - 15,953,711 (+)	Ensembl				GRCr8
mRatBN7.2	12	10,800,864 - 10,840,785 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	10,802,581 - 10,840,785 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	11,629,499 - 11,648,040 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	12,252,791 - 12,271,334 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	11,276,762 - 11,295,321 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	12,840,131 - 12,878,207 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	12,859,661 - 12,877,495 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	14,881,194 - 14,922,553 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	11,151,534 - 11,170,068 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	12,619,047 - 12,637,594 (+)	NCBI		Celera
RGSC_v3.1	12	11,181,461 - 11,196,973 (+)	NCBI
Cytogenetic Map	12	p11	NCBI

USP42
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	6,081,241 - 6,161,564 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	6,104,934 - 6,161,565 (+)	Ensembl			hg38	GRCh38
GRCh37	7	6,144,580 - 6,201,195 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	6,111,076 - 6,167,720 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	7	6,533,917 - 6,590,564 (-)	NCBI		Celera
Cytogenetic Map	7	p22.1	NCBI
HuRef	7	6,022,858 - 6,073,300 (+)	NCBI		HuRef
CHM1_1	7	6,144,305 - 6,200,795 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	6,197,991 - 6,280,940 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	6,190,906 - 6,247,551 (+)	NCBI

Usp42
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	143,696,077 - 143,741,600 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	143,696,080 - 143,718,035 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	143,710,325 - 143,759,753 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	143,710,325 - 143,732,280 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	144,471,194 - 144,493,149 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	143,966,583 - 143,987,842 (-)	NCBI		MGSCv36	mm8
Celera	5	140,752,888 - 140,775,236 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	82.5	NCBI

USP42
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	11,512,164 - 11,568,825 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	59,836,873 - 59,893,529 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	7,283,212 - 7,339,854 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	6,301,881 - 6,357,763 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	6,307,329 - 6,357,763 (+)	Ensembl			panPan2	panpan1.1

USP42
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	11,504,491 - 11,554,720 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	11,508,685 - 11,557,185 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	13,108,684 - 13,180,539 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	11,483,126 - 11,555,275 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	11,505,058 - 11,555,271 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	11,359,785 - 11,431,771 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	11,339,096 - 11,411,004 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	11,565,774 - 11,637,658 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Usp42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	139,571,419 - 139,636,425 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936750	308,808 - 349,252 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936750	307,517 - 349,212 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP42
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	5,006,241 - 5,048,282 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	5,002,406 - 5,048,327 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	5,091,988 - 5,128,036 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP42
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	15,292,782 - 15,366,029 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	15,314,782 - 15,363,986 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666102	717,775 - 774,863 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp42
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	31,194,125 - 31,218,998 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624740	31,191,511 - 31,234,186 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Usp42
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	9,389,382 - 9,408,350 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Usp42
387 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	165
Count of miRNA genes:	135
Interacting mature miRNAs:	145
Transcripts:	ENSRNOT00000001404
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	5921918	25247790	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
2306789	Ean6	Experimental allergic neuritis QTL 6	4.9		nervous system integrity trait (VT:0010566)	experimental autoimmune neuritis severity score (CMO:0001528)	12	1	29775522	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
1357337	Gluco3	Glucose level QTL 3		0.0004	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	12	1	16966671	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	1	33700600	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	11869600	16966542	Rat
61334	Gluco17	Glucose level QTL 17	6.3		adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)	12	1	16966671	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28133365	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	12233000	30490641	Rat
1300174	Bw15	Body weight QTL 15	2.93		body mass (VT:0001259)	body weight loss (CMO:0001399)	12	1	28606299	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	1	33700556	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	1	24849755	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303568	Bw88	Body weight QTL 88	3		body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28606299	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	7901625	33938215	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Markers in Region

D5Ertd591e

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	10,839,452 - 10,839,665 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	12,876,875 - 12,877,087	NCBI	Rnor6.0
Rnor_5.0	12	14,921,221 - 14,921,433	UniSTS	Rnor5.0
RGSC_v3.4	12	11,168,736 - 11,168,948	UniSTS	RGSC3.4
Celera	12	12,636,262 - 12,636,474	UniSTS
Cytogenetic Map	12	p11	UniSTS

RH137516

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	12	15,949,505 - 15,950,427 (+)	Marker Load Pipeline
mRatBN7.2	12	10,835,861 - 10,836,783 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	12,873,284 - 12,874,205	NCBI	Rnor6.0
Rnor_5.0	12	14,917,630 - 14,918,551	UniSTS	Rnor5.0
RGSC_v3.4	12	11,165,145 - 11,166,066	UniSTS	RGSC3.4
Celera	12	12,632,671 - 12,633,592	UniSTS
Cytogenetic Map	12	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_595185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001404 ⟹ ENSRNOP00000001404

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	15,931,703 - 15,953,711 (+)	Ensembl
mRatBN7.2 Ensembl	12	10,818,139 - 10,837,150 (+)	Ensembl
Rnor_6.0 Ensembl	12	12,859,661 - 12,877,495 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095083 ⟹ ENSRNOP00000093270

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	10,802,581 - 10,840,785 (+)	Ensembl

RefSeq Acc Id:

NM_001105909 ⟹ NP_001099379

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	15,935,895 - 15,954,429 (+)	NCBI
mRatBN7.2	12	10,822,250 - 10,840,785 (+)	NCBI
Rnor_6.0	12	12,859,673 - 12,878,207 (+)	NCBI
Rnor_5.0	12	14,881,194 - 14,922,553 (+)	NCBI
RGSC_v3.4	12	11,151,534 - 11,170,068 (+)	RGD
Celera	12	12,619,047 - 12,637,594 (+)	RGD

Sequence:

show sequence

ATGACCATAGTTGACAAAACTGAACCTTCAGACCCATCAACCTGTCAGAACCAGCCTGGCAGTT
CTGAGGCGGTCTCACCTGAAGACATGGACACAGGCTCTGCCAGCTGGGGTGCCGTGTCTTCCAT
AAGTGATGTCTCAAATCATACACTTTCATTGGGGCCGGTGCCTGGTGCTGTAGTTTACAATAAC
TCGTCTGTACCTGAGAAATCAAAACCATCACCACCAAAGGATCAAGTCCTAGGTGATGGCATTG
CTCCTCCTCAAAAGGTCCTATTTCCATCTGAAAAGATTTGTCTTAAGTGGCAACAAAGTCATCG
AGTTGGCGCTGGGCTGCAGAATTTGGGCAATACCTGTTTTGCCAATGCTGCGTTGCAATGTCTG
ACTTACACACCACCCCTCGCCAACTACATGCTATCCCATGAACACTCCAAGACATGCCATGCAG
AAGGATTCTGTATGATGTGCACAATGCAGACGCACATTACCCAGGCACTTAGCAACCCTGGGGA
TGTTATCAAGCCCATGTTCGTCATCAATGAAATGCGGCGTATAGCTAGACATTTCCGTTTTGGT
AACCAAGAAGATGCCCATGAATTTCTTCAGTACACGGTCGATGCCATGCAGAAAGCATGTTTAA
ATGGCAGCAATAAATTAGACAGACATACCCAGGCCACCACCCTGGTCTGCCAGATATTTGGAGG
CTACCTAAGATCCCGAGTCAAGTGTTTAAATTGCAAGGGTGTTTCAGACACCTTTGATCCATAC
CTGGACATAACACTGGAGATTAAGGCTGCACAGAGCGTTACCAAGGCGCTGGAACAGTTCGTGA
AGCCAGAACAACTGGATGGAGAAAACTCCTACAAATGTAGCAAGTGCAAAAAGATGGTTCCAGC
TTCAAAGAGATTCACCATCCATAGGTCCTCTAATGTTCTTACCATTTCACTGAAACGGTTTGCC
AACTTTACCGGTGGAAAAATTGCTAAGGACGTGAAATATCCCGAGTACCTTGATATCCGGCCCT
ATATGTCTCAGCCCAACGGAGAGCCCATCATTTATGTTTTGTATGCTGTGCTGGTGCACACCGG
TTTTAACTGTCATGCTGGCCACTACTTTTGCTACATCAAGGCTAGCAATGGCCTCTGGTATCAG
ATGAATGACTCTATCGTGTCCACCAGTGATATTAGATCGGTGCTTAACCAGCAGGCTTACGTGC
TCTTTTATATCAGGTCCCATGATGTGAAAAATGGAGGGGAGACCACTCATCCTGCCCATAGCCC
TGGCCAGTCCTCCCCCCGGCCAGGGATCAGTCAGCGTGTAGTCAACAGCAAGCAGGCGGCGCCA
GGATTCATCGGGCCGCAGCTGCCTCCCCATGTGATGAAGAACACACCACACTTGAATGGCACCA
CGCCGGTGAAAGACACACCAAGCAGTTCTGTTTCAAGCCCTAACGGAAACACCAGCGTCAATAG
GGCCAGTCCTGCTACGGCTTCGACGTCTGTGCAGAACTGGTCTGTTAACAGGCCCTCAGTTATT
CCGGAACACCCTAAGAAACAAAAAATTACTATCAGTATTCACAACAAGTTGCCTGTTCGTCAAG
GTCAGGCACAGCTGAATAACAACCTCCATGGCCCTTGTCTGGAGGCCCCTAGCAAGGCGGCCCC
CTCCTCCACCATCACTAACCCTTCTGCAATACAGTCTACCTCGAATGCACCCACGACATCAGTT
TCCCCAAGTGAGTCCTGTCCCAAGCCCATGGTGAATGGCAAGGCTAAAGTGGGCTCCAGTGTGC
TCGTCCCCTATGGGGCTGAGTCCTCAGAGGAGTCTGATGAGGAGTCCAAGGGCCTGGCCAAGGA
GAACGGTGTGGACATGATGACCAGCACTCAGTCCAGTAGACCAGAAACCGCAGATGAGGACGGT
GAGGCTTCCCCTCATGAGCTTCAAGAGTCCGTCATGCTAAATGGTGCTAATAGCGCAGACAGTG
ACTCGAGAGAGAGCAGCCTGGCATTTGACAGTGCCAGCTGCCAGGTCCAGCCCGATCTACACAC
AGAAAACCTCTTTAACAAACTCAATGGTCTTCCTGGAAAGGTGACGCCCGCTCCATTGCAGTCT
GTTCCTGAAGACAAAATCCTTGAGACTTTCAAGCTTACCAACCAGGCAAAAGGTCCAGCGGTTG
AAGAGAGTTGGACTACAACAGGGGGAAGCTCTCCAAGGGCCTCTGTTTCACAGCCGGAGCCCAT
CACCGATGAGACCAGTCCCCTTGAGATACCGGAGGCAGTCACCAACGGGAGCATGAAGACCCCT
TCCACCACGTCACCTCTGGAGCCCACCATCAGCTGTACCAAAGAAGACTCTTCCGTCGTCGTCG
TCTCAGCAGAACCTATGGAGGTTTTGCCTTCCGTCCCTGCTCTCTGTAACAGCACCGGTACTAC
CTTGGGGGATGCCCCAGTGCCCGAATCGTGTGACCCTGGAGACTTGACTGCCAACCCGAGCCAA
CCATCGCAAGCGGTGAAGGGTGATCCAGCTGAGAACTCTGAGAACTCCACCTTGGCTGAAGTGG
TGGAGAGGCTGAGCCCTGCTCCCTCTGTGCTCACAGGGGACGGGTGTGAGCAGAAACTCTTCCT
TTACCTCAGTACAGAGGGGTCCGAGGAGGCAGAAGACTCCTCCAGGAGCTCGGCAGTCTCTGCT
GACACGGTGCCCCCTCAGCCTGACAGGACCACCAGCTCCTGTGCAGGGGCTGCCGAGCAGGCTG
CCGGGGATAGAGGCGATGGAGGCAGTGTGGGACCCAAAGCTCAGGAGCCCTCCCCGGCCAAGGA
AAAGATGAACAGCCTTCGGAAAGTGGATCGAGGACACTATCGGAGCCGGAGAGACCGGTCCTCC
AGTGGGGAGCACGTGAGGGACAGCAGGGCCCGACCAGAGGACCATCACCATAAGAAGCGGCGCT
GCTACAGCCGAGAGCGGCCCAAGCAGGAGCGCCACCCTGCTAACACATACTGCAATGGGGGCCA
GCACCTGGGCCACGGCGACAGAGCCAGCCCCGAGCGCCGCTCCCTGAGCAGGTACAGCCACCAT
CACTCACGGGTTAGGAGTGGCCTGGAGCAGGACTGGAGCCGGTACCACCACTCGGAAAATGAGC
CTGCCTGGGCCAGGGAGAGGTTCTACCCGGACAAGATGCGCTGGGACAAGTGTAGGTATTACCA
CGACAGGTACACTACGACCCTGTACACGGCCCGGGAGGCAGCCCGCGAGTGGCGGCCTCTACAT
GGTCGTGAGCATGAACGCCTTGTCCAGTCTGGACGGCCACACAAGGACAGCTACTGGGGCCGCA
AGGGCTGGGACCTACAATCCCGGGGGAAGGAACGGCCCCACTTCCATAGCCCACGAGAGGCCCC
TGGCCTTGCTGTACCCCTCGAGAGGCATCTCCAAGAGAAGGCTGCGCTGAGTGTGCAGGACAGC
AGCCACAGTCTCCCTGAGCGCTTTCATGAACACGAAAGTGTCAAGTTGAGGAAAAGGAGGTATG
AGACTCTAGACAATAATGACGACCATCCAGAAAAGAAAGTCCACAAAAGCCTGGAGAAGGACGC
GCTAGAAGAGCCAAGGGCAAAGAAGCACAAAAAATCTAAAAAGAAAAAGAAGTCCAAAGATAAA
CACCGGGCTCGGGATAGCAGGCACCAGCAAGAATCCGACTTTTCAGGAGCATACTCTGATGCTG
ACCTCCATAGACACCGGAAGAAAAAGAAGAAAAAGAAAAGGCATTCAAGGAAGTCGGAGGACTT
TATAAAAGATGTTGAGATGCATTTACCGAAGCTCTCGAGCTATGAGGCCGTTGGCCATTTCCGG
AGAACAGAGGGCACCTTTCTACTGGCTGATGGTCTGCCTGTGGAAGACAGCGGCCCTTTCCGGG
AGAAAACGAAGCATTTAAGGATGGAAAGCCGGCCTGACAGATGTCATCTGTCAGAGTATGGCCA
GGGTAACTAAAAACCCTTGGCTTTATAACCACAAAATTACGAGTCAACATTTTCAACAGAAGCC
ATCCCCAACCCAGCTTAAATTATAAACATAGAAAATAACTTTGTCCAAACTGCGTGGTGCTTCT
TTAGTAAATACTGTACAGATTTTACCATGGACAACTTTTTTCCTTTTTTTTTTCTTTTTCTTTT
TTTTTTTTTCAGTTTTTACCTTTTCTTAATTGCCCTTATTCCAAATGGATACTTTGTACACTGC
TGAACGTTGTAAATTACCGTGTACATAAACCACACTGACAATATCGCCCTGGAATAGACCATCT
CAATGCTGCTTAACCACAGACTCAGGTGACTACTTGTATCTCATGTAATGTCCCTCCACGCTAG
ACACCTGGTGCACGGCCAGCTGGGAACCATGGACTTCACAAGGACAAGCGACAGTGCGTCTATT
TAATTTAAAGACTTATTTAAAGACCCAAGCTCTCAGCGAGACCTTCGAGGGCTTCCTCTGCAAT
GTCTGATACTAGAAACTAATTTGCTTCACATTTTAGTTGTATTCAAGATTTGAAGATGTGTTTT
ATAGACAAGTTCTGTTTTTGAACTTTGTGGAACTATTCCAATCAACTTACCAGTTATGATGAGT
ATTTGCATTATGAATGTATAATCCAGACATTATTTGTAAAGCCTACAGTATGTTTTTTTTACCT
AACACTTTTTATACTGTGTCTCGTCTCGACAATATGATGTTGGAGTCTGAGTCGTCAGCTTGAT
CCCTTCAAGTTTCTAGTTACAGACAAAAATCATACTGTGATTTTATTTTTAATATGGATATGCT
ATAAAACTGTGACACTTATAATTCACTGGTCCTGCATCAGGAGACGGGAGTGGGGAGAAGACTG
TATTTAATACAGTGTGTATCTGAATAATCTGTATGGTTTATATACAGTTTGTGTTGTTCAGAGA
TGTCTAAAGTTGATCTTTGTTTTTTTAAGATTAAAAAAAGCACTTGCCCCACTGTATATATACG
GCATGTAAGATTTATATAGTATATAAATGGCAGCAGATTAAACAACTCAGTCTCCGCTTCACTC
TGTGCTCCACAAGCGTGTGTTTTGAAGAATTGAGTCTTAGGCGGTTTTGTTTTTAGCGGTATGT
TTTTATTTACGGAAAACGGTATTTGCAATAGTTCTGACAGCTGTAAGGCCCTCCATTTCACTAG
CTGTTTGCAATAGCCAGAAATTCTGATGTGGACATTAATAGGATCTCTCTTCATGCAGGTTGTA
GGGAGTATGTACATTGTATAACATGGAAGAAATTAATACATATTTACACTATTTACATAGTAAC
TATTTATTGTAAATAGAAATGTTTTCTAAGATAAAAAGGAGAAATCACAACCTATGGTTTGTGG
TCTGTAACGACCTAACTTGTCAGCAAAGCACACCTTAGCTCTGAAGTCAGTATGACACGAAGCG
CACACAGTAGGCGGCTGCATCTCCAAAGGGTTCCCAGTTACACCGCTGTCCCACCACGTGTTCT
GAAGCCCAGCAGGACAGGAAACGCTCTTTGGCCAGAGTAGGGCTCAATGCTTCACTGATGAGTG
CAGACAAAGGGTGAAGGGCATGAGTGCCCAGCCTTTACAAGCTCTGGGCGTGGCCAGATGCCCT
TGGGGTTTAATACTGTCACAACGTAACCTGAGTTAAGTGACTCCTTGCGGATACTCCAAGAGCC
AGTAACTTAGGATTCTTAGCACCAACAGCCATCAGGCAAACCAACAGCCATAA

hide sequence

RefSeq Acc Id:

XM_017598289 ⟹ XP_017453778

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	15,903,110 - 15,953,733 (+)	NCBI
mRatBN7.2	12	10,800,864 - 10,840,089 (+)	NCBI
Rnor_6.0	12	12,840,132 - 12,877,753 (+)	NCBI

Sequence:

show sequence

ACAAAGTGTCCTATGTTGGTTACAATACTGCATGAAAATGAGCGTATGCATGGGACATAGACAG
GACAAAGAAAACACACCAAGGTTTCACACACAGTAAGTGAGCAGTACACAAACTGGGCAAGAGG
ACCAGAAAGAGGGCAGTGAGTAATGGTGCTTGCTGCCAACCCCGAGTCCCAGGCCCCACGTGGT
AAAAGGAGAAAAACAACCATTGCAAGTTGTCGTCGGACCTCCATATGTGCACTGGGGCACGTGT
ACAGACAGGCGTGTGTGTGAACACAATTATAAAACGGCTTTAAAAATGGGCAATGTGACTGACT
TAAGATACTGAATGCTCAAATATTTGTTCCTAGCTATCTTGTTGGTATTTGTGGACAGTAGGAA
CTCTGATCCTTGTGATTAATTCCGTTACTGGACATACGCCAAGAAGATCTCCCCTACGGTAGAT
TTCTCCAGAACCTCCAAGTTATCTTTATCCATAGCTTAAGGAGGTGTGCCGGGGCAGTAAGGAC
CTAGGCCATCAGGTCCTAGGACCTCTGGCCCTCTGGGTCAAGTCCATTCCCACCCCGCCACTAA
CTGGAGCTCCCCTGTAGGAGGAGACTTCTACAAACCTCCCAAGTTACTTCCCATTTCTTGAGGA
GGCCCATTGGTGTGCCTGGCCAGTGGGAACCTAGACCATCAGCTCCGAAGACCGCTGACGCTCT
TGGTCAGGTTTACTACAGGCTTCCCCACACCCATTGGAACTCCCCTGCCGGAGACTTCTTCAAG
CCCCCCACCCCCCACCAAGTTCCTCCCCCTATTTCTTGAGAGACTCATTGGTGTACCTATACAG
AGGGAATCGAGGTCATCAAGCCCCAGGACCTCTGACCCTTTGGGTCAAGTCCCCCTCCTATTGG
AGAGCCCCTTCAGGTGCAGAATTCTCCGAGTCTCCCAAGTTACATTCCTTATTCCTGAGGCCAG
TAGGGCCCTATATCAGCAGGTTTCAGGACCTGTGACCCTTGGGGTCAAGTCCTCTGCCAGATCC
CCACCAGTTGGAGTTCCCCTCTTCAAGTCTCCAAGTTATTTTCCATACTTTTTGAGGAGGCTTA
TTAGTGAGGTCAGCCTATAGAGACCAAGGTCACCAGGTCCCAAGACCTCTCTCTGACTCGAGGG
GAAATCTTCCTAGTTGAGGAGAATTCATCTCCCATATTACTTCCTTTAATTCTTGAGGACACTC
ATTGGTGAAGGCAGGCCTTAGGACCAACACCATCAGGGCCTAAGACCTCTGACCCTCACTCAGG
GTTAAGTCTATTCTGGGCCTCCAACCAATTGGCTCTCTCCAGTTGAGGAGAATTCTCAACCCTC
CTATATTACCACCTCCAGTTCTTGAGGGTTGAAAAATGACCATAGTTGACAAAACTGAACCTTC
AGACCCATCAACCTGTCAGAACCAGCCTGGCAGTTCTGAGGCGGTCTCACCTGAAGACATGGAC
ACAGGCTCTGCCAGCTGGGGTGCCGTGTCTTCCATAAGTGATGTCTCAAATCATACACTTTCAT
TGGGGCCGGTGCCTGGTGCTGTAGTTTACAATAACTCGTCTGTACCTGAGAAATCAAAACCATC
ACCACCAAAGGATCAAGTCCTAGGTGATGGCATTGCTCCTCCTCAAAAGGTCCTATTTCCATCT
GAAAAGATTTGTCTTAAGTGGCAACAAAGTCATCGAGTTGGCGCTGGGCTGCAGAATTTGGGCA
ATACCTGTTTTGCCAATGCTGCGTTGCAATGTCTGACTTACACACCACCCCTCGCCAACTACAT
GCTATCCCATGAACACTCCAAGACATGCCATGCAGAAGGATTCTGTATGATGTGCACAATGCAG
ACGCACATTACCCAGGCACTTAGCAACCCTGGGGATGTTATCAAGCCCATGTTCGTCATCAATG
AAATGCGGCGTATAGCTAGACATTTCCGTTTTGGTAACCAAGAAGATGCCCATGAATTTCTTCA
GTACACGGTCGATGCCATGCAGAAAGCATGTTTAAATGGCAGCAATAAATTAGACAGACATACC
CAGGCCACCACCCTGGTCTGCCAGATATTTGGAGGCTACCTAAGATCCCGAGTCAAGTGTTTAA
ATTGCAAGGGTGTTTCAGACACCTTTGATCCATACCTGGACATAACACTGGAGATTAAGGCTGC
ACAGAGCGTTACCAAGGCGCTGGAACAGTTCGTGAAGCCAGAACAACTGGATGGAGAAAACTCC
TACAAATGTAGCAAGTGCAAAAAGATGGTTCCAGCTTCAAAGAGATTCACCATCCATAGGTCCT
CTAATGTTCTTACCATTTCACTGAAACGGTTTGCCAACTTTACCGGTGGAAAAATTGCTAAGGA
CGTGAAATATCCCGAGTACCTTGATATCCGGCCCTATATGTCTCAGCCCAACGGAGAGCCCATC
ATTTATGTTTTGTATGCTGTGCTGGTGCACACCGGTTTTAACTGTCATGCTGGCCACTACTTTT
GCTACATCAAGGCTAGCAATGGCCTCTGGTATCAGATGAATGACTCTATCGTGTCCACCAGTGA
TATTAGATCGGTGCTTAACCAGCAGGCTTACGTGCTCTTTTATATCAGGTCCCATGATGTGAAA
AATGGAGGGGAGACCACTCATCCTGCCCATAGCCCTGGCCAGTCCTCCCCCCGGCCAGGGATCA
GTCAGCGTGTAGTCAACAGCAAGCAGGCGGCGCCAGGATTCATCGGGCCGCAGCTGCCTCCCCA
TGTGATGAAGAACACACCACACTTGAATGGCACCACGCCGGTGAAAGACACACCAAGCAGTTCT
GTTTCAAGCCCTAACGGAAACACCAGCGTCAATAGGGCCAGTCCTGCTACGGCTTCGACGTCTG
TGCAGAACTGGTCTGTTAACAGGCCCTCAGTTATTCCGGAACACCCTAAGAAACAAAAAATTAC
TATCAGTATTCACAACAAGTTGCCTGTTCGTCAAGGTCAGGCACAGCTGAATAACAACCTCCAT
GGCCCTTGTCTGGAGGCCCCTAGCAAGGCGGCCCCCTCCTCCACCATCACTAACCCTTCTGCAA
TACAGTCTACCTCGAATGCACCCACGACATCAGTTTCCCCAAGTGAGTCCTGTCCCAAGCCCAT
GGTGAATGGCAAGGCTAAAGTGGGCTCCAGTGTGCTCGTCCCCTATGGGGCTGAGTCCTCAGAG
GAGTCTGATGAGGAGTCCAAGGGCCTGGCCAAGGAGAACGGTGTGGACATGATGACCAGCACTC
AGTCCAGTAGACCAGAAACCGCAGATGAGGACGGTGAGGCTTCCCCTCATGAGCTTCAAGAGTC
CGTCATGCTAAATGGTGCTAATAGCGCAGACAGTGACTCGAGAGAGAGCAGCCTGGCATTTGAC
AGTGCCAGCTGCCAGGTCCAGCCCGATCTACACACAGAAAACCTCTTTAACAAACTCAATGGTC
TTCCTGGAAAGGTGACGCCCGCTCCATTGCAGTCTGTTCCTGAAGACAAAATCCTTGAGACTTT
CAAGCTTACCAACCAGGCAAAAGGTCCAGCGGTTGAAGAGAGTTGGACTACAACAGGGGGAAGC
TCTCCAAGGGCCTCTGTTTCACAGCCGGAGCCCATCACCGATGAGACCAGTCCCCTTGAGATAC
CGGAGGCAGTCACCAACGGGAGCATGAAGACCCCTTCCACCACGTCACCTCTGGAGCCCACCAT
CAGCTGTACCAAAGAAGACTCTTCCGTCGTCGTCGTCTCAGCAGAACCTATGGAGGTTTTGCCT
TCCGTCCCTGCTCTCTGTAACAGCACCGGTACTACCTTGGGGGATGCCCCAGTGCCCGAATCGT
GTGACCCTGGAGACTTGACTGCCAACCCGAGCCAACCATCGCAAGCGGTGAAGGGTGATCCAGC
TGAGAACTCTGAGAACTCCACCTTGGCTGAAGTGGTGGAGAGGCTGAGCCCTGCTCCCTCTGTG
CTCACAGGGGACGGGTGTGAGCAGAAACTCTTCCTTTACCTCAGTACAGAGGGGTCCGAGGAGG
CAGAAGACTCCTCCAGGAGCTCGGCAGTCTCTGCTGACACGGTGCCCCCTCAGCCTGACAGGAC
CACCAGCTCCTGTGCAGGGGCTGCCGAGCAGGCTGCCGGGGATAGAGGCGATGGAGGCAGTGTG
GGACCCAAAGCTCAGGAGCCCTCCCCGGCCAAGGAAAAGATGAACAGCCTTCGGAAAGTGGATC
GAGGACACTATCGGAGCCGGAGAGACCGGTCCTCCAGTGGGGAGCACGTGAGGGACAGCAGGGC
CCGACCAGAGGACCATCACCATAAGAAGCGGCGCTGCTACAGCCGAGAGCGGCCCAAGCAGGAG
CGCCACCCTGCTAACACATACTGCAATGGGGGCCAGCACCTGGGCCACGGCGACAGAGCCAGCC
CCGAGCGCCGCTCCCTGAGCAGGTACAGCCACCATCACTCACGGGTTAGGAGTGGCCTGGAGCA
GGACTGGAGCCGGTACCACCACTCGGAAAATGAGCCTGCCTGGGCCAGGGAGAGGTTCTACCCG
GACAAGATGCGCTGGGACAAGTGTAGGTATTACCACGACAGGTACACTACGACCCTGTACACGG
CCCGGGAGGCAGCCCGCGAGTGGCGGCCTCTACATGGTCGTGAGCATGAACGCCTTGTCCAGTC
TGGACGGCCACACAAGGACAGCTACTGGGGCCGCAAGGGCTGGGACCTACAATCCCGGGGGAAG
GAACGGCCCCACTTCCATAGCCCACGAGAGGCCCCTGGCCTTGCTGTACCCCTCGAGAGGCATC
TCCAAGAGAAGGCTGCGCTGAGTGTGCAGGACAGCAGCCACAGTCTCCCTGAGCGCTTTCATGA
ACACGAAAGTGTCAAGTTGAGGAAAAGGAGGTATGAGACTCTAGACAATAATGACGACCATCCA
GAAAAGAAAGTCCACAAAAGCCTGGAGAAGGACGCGCTAGAAGAGCCAAGGGCAAAGAAGCACA
AAAAATCTAAAAAGAAAAAGAAGTCCAAAGATAAACACCGGGCTCGGGATAGCAGGCACCAGCA
AGAATCCGACTTTTCAGGAGCATACTCTGATGCTGACCTCCATAGACACCGGAAGAAAAAGAAG
AAAAAGAAAAGGCATTCAAGGAAGTCGGAGGACTTTATAAAAGATGTTGAGATGCATTTACCGA
AGCTCTCGAGCTATGAGGCCGTTGGCCATTTCCGGAGAACAGAGGGCACCTTTCTACTGGCTGA
TGGTCTGCCTGTGGAAGACAGCGGCCCTTTCCGGGAGAAAACGAAGCATTTAAGGATGGAAAGC
CGGCCTGACAGATGTCATCTGTCAGAGTATGGCCAGGGTAACTAAAAACCCTTGGCTTTATAAC
CACAAAATTACGAGTCAACATTTTCAACAGAAGCCATCCCCAACCCAGCTTAAATTATAAACAT
AGAAAATAACTTTGTCCAAACTGCGTGGTGCTTCTTTAGTAAATACTGTACAGATTTTACCATG
GACAACTTTTTTCCTTTTTTTTTTCTTTTTCTTTTTTTTTTTTTCAGTTTTTACCTTTTCTTAA
TTGCCCTTATTCCAAATGGATACTTTGTACACTGCTGAACGTTGTAAATTACCGTGTACATAAA
CCACACTGACAATATCGCCCTGGAATAGACCATCTCAATGCTGCTTAACCACAGACTCAGGTGA
CTACTTGTATCTCATGTAATGTCCCTCCACGCTAGACACCTGGTGCACGGCCAGCTGGGAACCA
TGGACTTCACAAGGACAAGCGACAGTGCGTCTATTTAATTTAAAGACTTATTTAAAGACCCAAG
CTCTCAGCGAGACCTTCGAGGGCTTCCTCTGCAATGTCTGATACTAGAAACTAATTTGCTTCAC
ATTTTAGTTGTATTCAAGATTTGAAGATGTGTTTTATAGACAAGTTCTGTTTTTGAACTTTGTG
GAACTATTCCAATCAACTTACCAGTTATGATGAGTATTTGCATTATGAATGTATAATCCAGACA
TTATTTGTAAAGCCTACAGTATGTTTTTTTTACCTAACACTTTTTATACTGTGTCTCGTCTCGA
CAATATGATGTTGGAGTCTGAGTCGTCAGCTTGATCCCTTCAAGTTTCTAGTTACAGACAAAAA
TCATACTGTGATTTTATTTTTAATATGGATATGCTATAAAACTGTGACACTTATAATTCACTGG
TCCTGCATCAGGAGACGGGAGTGGGGAGAAGACTGTATTTAATACAGTGTGTATCTGAATAATC
TGTATGGTTTATATACAGTTTGTGTTGTTCAGAGATGTCTAAAGTTGATCTTTGTTTTTTTAAG
ATTAAAAAAAGCACTTGCCCCACTGTATATATACGGCATGTAAGATTTATATAGTATATAAATG
GCAGCAGATTAAACAACTCAGTCTCCGCTTCACTCTGTGCTCCACAAGCGTGTGTTTTGAAGAA
TTGAGTCTTAGGCGGTTTTGTTTTTAGCGGTATGTTTTTATTTACGGAAAACGGTATTTGCAAT
AGTTCTGACAGCTGTAAGGCCCTCCATTTCACTAGCTGTTTGCAATAGCCAGAAATTCTGATGT
GGACATTAATAGGATCTCTCTTCATGCAGGTTGTAGGGAGTATGTACATTGTATAACATGGAAG
AAATTAATACATATTTAC

hide sequence

RefSeq Acc Id:

XM_063271139 ⟹ XP_063127209

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	15,916,753 - 15,953,733 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099379	(Get FASTA)	NCBI Sequence Viewer
	XP_017453778	(Get FASTA)	NCBI Sequence Viewer
	XP_063127209	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D3ZU96	(Get FASTA)	NCBI Sequence Viewer
	EDL89655	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001404
	ENSRNOP00000093270.1

RefSeq Acc Id:

NP_001099379 ⟸ NM_001105909

- UniProtKB:

D3ZU96 (UniProtKB/Swiss-Prot), A0A8L2UH81 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTIVDKTEPSDPSTCQNQPGSSEAVSPEDMDTGSASWGAVSSISDVSNHTLSLGPVPGAVVYNN
SSVPEKSKPSPPKDQVLGDGIAPPQKVLFPSEKICLKWQQSHRVGAGLQNLGNTCFANAALQCL
TYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNPGDVIKPMFVINEMRRIARHFRFG
NQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPY
LDITLEIKAAQSVTKALEQFVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTISLKRFA
NFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIIYVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQ
MNDSIVSTSDIRSVLNQQAYVLFYIRSHDVKNGGETTHPAHSPGQSSPRPGISQRVVNSKQAAP
GFIGPQLPPHVMKNTPHLNGTTPVKDTPSSSVSSPNGNTSVNRASPATASTSVQNWSVNRPSVI
PEHPKKQKITISIHNKLPVRQGQAQLNNNLHGPCLEAPSKAAPSSTITNPSAIQSTSNAPTTSV
SPSESCPKPMVNGKAKVGSSVLVPYGAESSEESDEESKGLAKENGVDMMTSTQSSRPETADEDG
EASPHELQESVMLNGANSADSDSRESSLAFDSASCQVQPDLHTENLFNKLNGLPGKVTPAPLQS
VPEDKILETFKLTNQAKGPAVEESWTTTGGSSPRASVSQPEPITDETSPLEIPEAVTNGSMKTP
STTSPLEPTISCTKEDSSVVVVSAEPMEVLPSVPALCNSTGTTLGDAPVPESCDPGDLTANPSQ
PSQAVKGDPAENSENSTLAEVVERLSPAPSVLTGDGCEQKLFLYLSTEGSEEAEDSSRSSAVSA
DTVPPQPDRTTSSCAGAAEQAAGDRGDGGSVGPKAQEPSPAKEKMNSLRKVDRGHYRSRRDRSS
SGEHVRDSRARPEDHHHKKRRCYSRERPKQERHPANTYCNGGQHLGHGDRASPERRSLSRYSHH
HSRVRSGLEQDWSRYHHSENEPAWARERFYPDKMRWDKCRYYHDRYTTTLYTAREAAREWRPLH
GREHERLVQSGRPHKDSYWGRKGWDLQSRGKERPHFHSPREAPGLAVPLERHLQEKAALSVQDS
SHSLPERFHEHESVKLRKRRYETLDNNDDHPEKKVHKSLEKDALEEPRAKKHKKSKKKKKSKDK
HRARDSRHQQESDFSGAYSDADLHRHRKKKKKKKRHSRKSEDFIKDVEMHLPKLSSYEAVGHFR
RTEGTFLLADGLPVEDSGPFREKTKHLRMESRPDRCHLSEYGQGN

hide sequence

RefSeq Acc Id:	XP_017453778 ⟸ XM_017598289
- Peptide Label:	isoform X1
- UniProtKB:	D3ZU96 (UniProtKB/Swiss-Prot), A0A8L2UH81 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTIVDKTEPSDPSTCQNQPGSSEAVSPEDMDTGSASWGAVSSISDVSNHTLSLGPVPGAVVYNN SSVPEKSKPSPPKDQVLGDGIAPPQKVLFPSEKICLKWQQSHRVGAGLQNLGNTCFANAALQCL TYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNPGDVIKPMFVINEMRRIARHFRFG NQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPY LDITLEIKAAQSVTKALEQFVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTISLKRFA NFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIIYVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQ MNDSIVSTSDIRSVLNQQAYVLFYIRSHDVKNGGETTHPAHSPGQSSPRPGISQRVVNSKQAAP GFIGPQLPPHVMKNTPHLNGTTPVKDTPSSSVSSPNGNTSVNRASPATASTSVQNWSVNRPSVI PEHPKKQKITISIHNKLPVRQGQAQLNNNLHGPCLEAPSKAAPSSTITNPSAIQSTSNAPTTSV SPSESCPKPMVNGKAKVGSSVLVPYGAESSEESDEESKGLAKENGVDMMTSTQSSRPETADEDG EASPHELQESVMLNGANSADSDSRESSLAFDSASCQVQPDLHTENLFNKLNGLPGKVTPAPLQS VPEDKILETFKLTNQAKGPAVEESWTTTGGSSPRASVSQPEPITDETSPLEIPEAVTNGSMKTP STTSPLEPTISCTKEDSSVVVVSAEPMEVLPSVPALCNSTGTTLGDAPVPESCDPGDLTANPSQ PSQAVKGDPAENSENSTLAEVVERLSPAPSVLTGDGCEQKLFLYLSTEGSEEAEDSSRSSAVSA DTVPPQPDRTTSSCAGAAEQAAGDRGDGGSVGPKAQEPSPAKEKMNSLRKVDRGHYRSRRDRSS SGEHVRDSRARPEDHHHKKRRCYSRERPKQERHPANTYCNGGQHLGHGDRASPERRSLSRYSHH HSRVRSGLEQDWSRYHHSENEPAWARERFYPDKMRWDKCRYYHDRYTTTLYTAREAAREWRPLH GREHERLVQSGRPHKDSYWGRKGWDLQSRGKERPHFHSPREAPGLAVPLERHLQEKAALSVQDS SHSLPERFHEHESVKLRKRRYETLDNNDDHPEKKVHKSLEKDALEEPRAKKHKKSKKKKKSKDK HRARDSRHQQESDFSGAYSDADLHRHRKKKKKKKRHSRKSEDFIKDVEMHLPKLSSYEAVGHFR RTEGTFLLADGLPVEDSGPFREKTKHLRMESRPDRCHLSEYGQGN hide sequence

Ensembl Acc Id:

ENSRNOP00000001404 ⟸ ENSRNOT00000001404

Ensembl Acc Id:

ENSRNOP00000093270 ⟸ ENSRNOT00000095083

RefSeq Acc Id:	XP_063127209 ⟸ XM_063271139
- Peptide Label:	isoform X1
- UniProtKB:	D3ZU96 (UniProtKB/Swiss-Prot), A0A8L2UH81 (UniProtKB/TrEMBL)

Protein Domains

USP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZU96-F1-model_v2	AlphaFold	D3ZU96	1-1325	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305231	AgrOrtholog
BioCyc Gene	G2FUF-20012	BioCyc
Ensembl Genes	ENSRNOG00000001059	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000001404	ENTREZGENE
	ENSRNOT00000095083.1	UniProtKB/Swiss-Prot
Gene3D-CATH	Cysteine proteinases	UniProtKB/Swiss-Prot
InterPro	Papain-like_cys_pep_sf	UniProtKB/Swiss-Prot
	Peptidase_C19	UniProtKB/Swiss-Prot
	Peptidase_C19_UCH	UniProtKB/Swiss-Prot
	USP_CS	UniProtKB/Swiss-Prot
	USP_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:288482	UniProtKB/Swiss-Prot
NCBI Gene	288482	ENTREZGENE
PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/Swiss-Prot
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42	UniProtKB/Swiss-Prot
Pfam	UCH	UniProtKB/Swiss-Prot
PhenoGen	Usp42	PhenoGen
PROSITE	USP_1	UniProtKB/Swiss-Prot
	USP_2	UniProtKB/Swiss-Prot
	USP_3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000001059	RatGTEx
Superfamily-SCOP	SSF54001	UniProtKB/Swiss-Prot
UniProt	A0A8L2UH81	ENTREZGENE, UniProtKB/TrEMBL
	D3ZU96	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Usp42	ubiquitin specific peptidase 42	Usp42_predicted	ubiquitin specific protease 42 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Usp42_predicted	ubiquitin specific protease 42 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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