Nt5dc1 (5'-nucleotidase domain containing 1) - Rat Genome Database

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Gene: Nt5dc1 (5'-nucleotidase domain containing 1) Rattus norvegicus
Analyze
Symbol: Nt5dc1
Name: 5'-nucleotidase domain containing 1
RGD ID: 1305214
Description: Predicted to enable 5'-nucleotidase activity. Orthologous to human NT5DC1 (5'-nucleotidase domain containing 1); INTERACTS WITH (S)-nicotine; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5'-nucleotidase domain-containing protein 1; 5'-nucleotidase domain-containing protein 1-like; 5'-nucleotidase, cytosolic II-like 1; LOC102554902; LOC294456; Nt5c2l1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82039,660,707 - 39,763,647 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2039,660,707 - 39,786,449 (-)EnsemblGRCr8
mRatBN7.22038,105,677 - 38,208,613 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2038,105,678 - 38,208,591 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2039,822,723 - 39,925,595 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02039,481,840 - 39,584,723 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02040,201,663 - 40,304,596 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02041,106,990 - 41,209,765 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2041,106,991 - 41,209,728 (-)Ensemblrn6Rnor6.0
Rnor_5.02042,836,806 - 42,938,666 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42038,646,201 - 38,750,613 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2038,888,068 - 38,989,368 (-)NCBICelera
RGSC_v3.12038,670,228 - 38,776,528 (-)NCBI
Cytogenetic Map20q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
melanoma  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Nt5dc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82039,660,707 - 39,763,647 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2039,660,707 - 39,786,449 (-)EnsemblGRCr8
mRatBN7.22038,105,677 - 38,208,613 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2038,105,678 - 38,208,591 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2039,822,723 - 39,925,595 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02039,481,840 - 39,584,723 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02040,201,663 - 40,304,596 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02041,106,990 - 41,209,765 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2041,106,991 - 41,209,728 (-)Ensemblrn6Rnor6.0
Rnor_5.02042,836,806 - 42,938,666 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42038,646,201 - 38,750,613 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2038,888,068 - 38,989,368 (-)NCBICelera
RGSC_v3.12038,670,228 - 38,776,528 (-)NCBI
Cytogenetic Map20q12NCBI
NT5DC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386116,100,853 - 116,249,497 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6116,100,837 - 116,249,497 (+)Ensemblhg38GRCh38
GRCh376116,422,016 - 116,570,660 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366116,528,692 - 116,673,546 (+)NCBIBuild 36Build 36hg18NCBI36
Build 346116,528,691 - 116,673,545NCBI
Celera6117,165,022 - 117,309,890 (+)NCBICelera
Cytogenetic Map6q22.1NCBI
HuRef6114,002,198 - 114,147,046 (+)NCBIHuRef
CHM1_16116,685,819 - 116,830,746 (+)NCBICHM1_1
T2T-CHM13v2.06117,284,838 - 117,433,477 (+)NCBIT2T-CHM13v2.0
Nt5dc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391034,179,605 - 34,294,585 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1034,164,284 - 34,294,548 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381034,303,609 - 34,418,589 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1034,288,288 - 34,418,552 (-)Ensemblmm10GRCm38
MGSCv371034,023,418 - 34,138,334 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361033,993,225 - 34,107,944 (-)NCBIMGSCv36mm8
Celera1035,213,268 - 35,327,093 (-)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1018.85NCBI
Nt5dc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955526568,307 - 604,941 (-)NCBIChiLan1.0ChiLan1.0
NT5DC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25136,109,009 - 136,253,828 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16134,001,995 - 134,146,804 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06113,903,473 - 114,051,784 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16118,049,363 - 118,194,017 (+)NCBIPanPan1.1PanPan1.1panPan2
NT5DC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11271,790,973 - 71,909,109 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1271,791,748 - 71,907,498 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1271,550,833 - 71,670,015 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01272,672,270 - 72,791,171 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1272,672,277 - 72,791,718 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11272,024,246 - 72,143,173 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01271,866,027 - 71,984,731 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01272,254,898 - 72,373,702 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101970611
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946107,080,662 - 107,116,124 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936824723,160 - 839,436 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936824805,647 - 841,113 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NT5DC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl181,746,022 - 81,881,113 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1181,745,918 - 81,880,691 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2191,861,465 - 91,997,370 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NT5DC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11357,568,061 - 57,715,702 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1357,569,744 - 57,715,604 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604029,889,313 - 30,038,021 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nt5dc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248562,246,730 - 2,389,020 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Nt5dc1
598 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:568
Count of miRNA genes:256
Interacting mature miRNAs:319
Transcripts:ENSRNOT00000000657
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203215696745978663Rat

Markers in Region
RH133024  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22038,163,353 - 38,163,570 (+)MAPPERmRatBN7.2
Rnor_6.02041,164,532 - 41,164,748NCBIRnor6.0
Rnor_5.02042,893,619 - 42,893,835UniSTSRnor5.0
Celera2038,944,144 - 38,944,360UniSTS
RH 3.4 Map20405.55UniSTS
Cytogenetic Map20q12UniSTS
RH94871  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22038,188,033 - 38,188,329 (+)MAPPERmRatBN7.2
Rnor_6.02041,189,210 - 41,189,505NCBIRnor6.0
Rnor_5.02042,918,112 - 42,918,407UniSTSRnor5.0
RGSC_v3.42038,730,059 - 38,730,354UniSTSRGSC3.4
Celera2038,968,837 - 38,969,132UniSTS
RH 3.4 Map20408.35UniSTS
Cytogenetic Map20q12UniSTS
BE106510  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22038,193,210 - 38,193,402 (+)MAPPERmRatBN7.2
Rnor_6.02041,194,387 - 41,194,578NCBIRnor6.0
Rnor_5.02042,923,289 - 42,923,480UniSTSRnor5.0
RGSC_v3.42038,735,236 - 38,735,427UniSTSRGSC3.4
Celera2038,974,014 - 38,974,205UniSTS
RH 3.4 Map20408.51UniSTS
Cytogenetic Map20q12UniSTS
BE107833  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22038,107,305 - 38,107,459 (+)MAPPERmRatBN7.2
Rnor_6.02041,108,619 - 41,108,772NCBIRnor6.0
Rnor_5.02042,838,434 - 42,838,587UniSTSRnor5.0
RGSC_v3.42038,647,829 - 38,647,982UniSTSRGSC3.4
Celera2038,889,696 - 38,889,849UniSTS
RH 3.4 Map20403.23UniSTS
Cytogenetic Map20q12UniSTS
AU046561  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22038,135,358 - 38,135,499 (+)MAPPERmRatBN7.2
Rnor_6.02041,136,677 - 41,136,817NCBIRnor6.0
RGSC_v3.42038,675,887 - 38,676,027UniSTSRGSC3.4
Cytogenetic Map20q12UniSTS
RH138488  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22038,207,479 - 38,207,659 (+)MAPPERmRatBN7.2
Rnor_6.02041,208,656 - 41,208,835NCBIRnor6.0
Rnor_5.02042,937,558 - 42,937,737UniSTSRnor5.0
RGSC_v3.42038,749,505 - 38,749,684UniSTSRGSC3.4
Celera2038,988,260 - 38,988,439UniSTS
RH 3.4 Map20408.51UniSTS
Cytogenetic Map20q12UniSTS
RH139629  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22038,189,069 - 38,189,249 (+)MAPPERmRatBN7.2
Rnor_6.02041,190,246 - 41,190,425NCBIRnor6.0
Rnor_5.02042,919,148 - 42,919,327UniSTSRnor5.0
RGSC_v3.42038,731,095 - 38,731,274UniSTSRGSC3.4
Celera2038,969,873 - 38,970,052UniSTS
RH 3.4 Map20407.04UniSTS
Cytogenetic Map20q12UniSTS
Col10a1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22038,188,024 - 38,188,449 (+)MAPPERmRatBN7.2
Rnor_6.02041,189,201 - 41,189,625NCBIRnor6.0
Rnor_5.02042,918,103 - 42,918,527UniSTSRnor5.0
RGSC_v3.42038,730,050 - 38,730,474UniSTSRGSC3.4
Celera2038,968,828 - 38,969,252UniSTS
Cytogenetic Map20q12UniSTS
BF391491  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22038,105,746 - 38,105,941 (+)MAPPERmRatBN7.2
Rnor_6.02041,107,060 - 41,107,254NCBIRnor6.0
Rnor_5.02042,836,875 - 42,837,069UniSTSRnor5.0
RGSC_v3.42038,646,270 - 38,646,464UniSTSRGSC3.4
Celera2038,888,137 - 38,888,331UniSTS
RH 3.4 Map20404.53UniSTS
Cytogenetic Map20q12UniSTS
Col10a1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22038,187,548 - 38,188,135 (+)MAPPERmRatBN7.2
Rnor_6.02041,188,725 - 41,189,311NCBIRnor6.0
Rnor_5.02042,917,812 - 42,918,213UniSTSRnor5.0
RGSC_v3.42038,729,602 - 38,730,160UniSTSRGSC3.4
Celera2038,968,357 - 38,968,938UniSTS
Cytogenetic Map20q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000657   ⟹   ENSRNOP00000000657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2039,660,707 - 39,763,631 (-)Ensembl
mRatBN7.2 Ensembl2038,105,678 - 38,208,588 (-)Ensembl
Rnor_6.0 Ensembl2041,106,991 - 41,209,728 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107792   ⟹   ENSRNOP00000088714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2039,744,641 - 39,763,631 (-)Ensembl
mRatBN7.2 Ensembl2038,189,611 - 38,208,588 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116093   ⟹   ENSRNOP00000081839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2039,727,624 - 39,763,631 (-)Ensembl
mRatBN7.2 Ensembl2038,172,597 - 38,208,591 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000121516   ⟹   ENSRNOP00000110072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2039,660,707 - 39,780,415 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000128540   ⟹   ENSRNOP00000104647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2039,660,707 - 39,786,449 (-)Ensembl
RefSeq Acc Id: NM_001106393   ⟹   NP_001099863
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82039,660,707 - 39,763,631 (-)NCBI
mRatBN7.22038,105,677 - 38,208,601 (-)NCBI
Rnor_6.02041,106,991 - 41,209,764 (-)NCBI
Rnor_5.02042,836,806 - 42,938,666 (-)NCBI
RGSC_v3.42038,646,201 - 38,750,613 (-)RGD
Celera2038,888,068 - 38,989,368 (-)RGD
Sequence:
RefSeq Acc Id: XM_008772981   ⟹   XP_008771203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82039,660,707 - 39,763,647 (-)NCBI
mRatBN7.22038,105,677 - 38,208,612 (-)NCBI
Rnor_6.02041,106,990 - 41,209,761 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039098600   ⟹   XP_038954528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82039,660,707 - 39,747,134 (-)NCBI
mRatBN7.22038,105,677 - 38,192,104 (-)NCBI
RefSeq Acc Id: XM_039098601   ⟹   XP_038954529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82039,718,300 - 39,763,639 (-)NCBI
mRatBN7.22038,163,269 - 38,208,613 (-)NCBI
RefSeq Acc Id: XM_039098602   ⟹   XP_038954530
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82039,718,300 - 39,763,639 (-)NCBI
mRatBN7.22038,163,269 - 38,208,613 (-)NCBI
RefSeq Acc Id: XM_039098603   ⟹   XP_038954531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82039,718,300 - 39,763,639 (-)NCBI
mRatBN7.22038,163,269 - 38,208,613 (-)NCBI
RefSeq Acc Id: XM_039098604   ⟹   XP_038954532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82039,718,300 - 39,763,639 (-)NCBI
mRatBN7.22038,163,269 - 38,208,613 (-)NCBI
RefSeq Acc Id: XM_039098605   ⟹   XP_038954533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82039,718,300 - 39,763,639 (-)NCBI
mRatBN7.22038,163,269 - 38,208,613 (-)NCBI
RefSeq Acc Id: NP_001099863   ⟸   NM_001106393
- UniProtKB: F7EPM6 (UniProtKB/TrEMBL),   A0A9K3Y748 (UniProtKB/TrEMBL),   B1WC66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771203   ⟸   XM_008772981
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000000657   ⟸   ENSRNOT00000000657
RefSeq Acc Id: XP_038954528   ⟸   XM_039098600
- Peptide Label: isoform X2
- UniProtKB: A6KID0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954530   ⟸   XM_039098602
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AAF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954532   ⟸   XM_039098604
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038954529   ⟸   XM_039098601
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AAF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954533   ⟸   XM_039098605
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AAF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954531   ⟸   XM_039098603
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000081839   ⟸   ENSRNOT00000116093
Ensembl Acc Id: ENSRNOP00000088714   ⟸   ENSRNOT00000107792
Ensembl Acc Id: ENSRNOP00000110072   ⟸   ENSRNOT00000121516
Ensembl Acc Id: ENSRNOP00000104647   ⟸   ENSRNOT00000128540

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WC66-F1-model_v2 AlphaFold B1WC66 1-461 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701642
Promoter ID:EPDNEW_R12165
Type:initiation region
Name:Nt5dc1_1
Description:5'-nucleotidase domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02041,209,762 - 41,209,822EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305214 AgrOrtholog
BioCyc Gene G2FUF-3551 BioCyc
BioCyc Pathway PWY-5695 [inosine 5'-phosphate degradation] BioCyc
  PWY-6608 [guanosine nucleotides degradation III] BioCyc
  PWY-7185 [UTP and CTP dephosphorylation I] BioCyc
  SALVADEHYPOX-PWY [adenosine nucleotides degradation II] BioCyc
BioCyc Pathway Image PWY-5695 BioCyc
  PWY-6608 BioCyc
  PWY-7185 BioCyc
  SALVADEHYPOX-PWY BioCyc
Ensembl Genes ENSRNOG00000000546 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000657 ENTREZGENE
  ENSRNOT00000000657.8 UniProtKB/TrEMBL
  ENSRNOT00000107792.2 UniProtKB/TrEMBL
  ENSRNOT00000116093.2 UniProtKB/TrEMBL
  ENSRNOT00000121516 ENTREZGENE
  ENSRNOT00000121516.1 UniProtKB/TrEMBL
  ENSRNOT00000128540.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1000 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9098589 IMAGE-MGC_LOAD
InterPro HAD-like_dom UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD-SF_hydro_IG_5-nucl UniProtKB/TrEMBL
KEGG Report rno:294456 UniProtKB/TrEMBL
MGC_CLONE MGC:187900 IMAGE-MGC_LOAD
NCBI Gene 294456 ENTREZGENE
PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR12103 UniProtKB/TrEMBL
Pfam 5_nucleotid UniProtKB/TrEMBL
PhenoGen Nt5dc1 PhenoGen
RatGTEx ENSRNOG00000000546 RatGTEx
Superfamily-SCOP HAD-like_dom UniProtKB/TrEMBL
UniProt A0A8I5ZTC1_RAT UniProtKB/TrEMBL
  A0A8I6AAF7 ENTREZGENE, UniProtKB/TrEMBL
  A0A9K3Y748 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LGU9_RAT UniProtKB/TrEMBL
  A0ABK0LGX3_RAT UniProtKB/TrEMBL
  A6KID0 ENTREZGENE, UniProtKB/TrEMBL
  B1WC66 ENTREZGENE, UniProtKB/TrEMBL
  F7EPM6 ENTREZGENE
UniProt Secondary F7EPM6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Nt5dc1  5'-nucleotidase domain containing 1  LOC102554902  5'-nucleotidase domain-containing protein 1-like  Data merged from RGD:7636429 737654 PROVISIONAL
2013-12-18 LOC102554902  5'-nucleotidase domain-containing protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Nt5dc1  5'-nucleotidase domain containing 1   Nt5dc1_predicted  5'-nucleotidase domain containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Nt5dc1_predicted  5'-nucleotidase domain containing 1 (predicted)  Nt5c2l1_predicted  5'-nucleotidase, cytosolic II-like 1 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Nt5c2l1_predicted  5'-nucleotidase, cytosolic II-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED