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Gene: Jph2 (junctophilin 2) Rattus norvegicus

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Symbol:

Jph2

Name:

junctophilin 2

RGD ID:

1305196

Description:

Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; core promoter sequence-specific DNA binding activity; and phospholipid binding activity. Predicted to be involved in calcium ion homeostasis; negative regulation of transcription by RNA polymerase II; and regulation of cardiac muscle tissue development. Predicted to act upstream of or within positive regulation of cytosolic calcium ion concentration. Predicted to be located in Z disc; membrane; and nucleus. Predicted to be part of junctional membrane complex. Predicted to be active in endoplasmic reticulum membrane; plasma membrane; and sarcoplasmic reticulum. Biomarker of hypertrophic cardiomyopathy. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 2E and hypertrophic cardiomyopathy 17. Orthologous to human JPH2 (junctophilin 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

JP-2; junctophilin type 2; junctophilin-2; LOC296345

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	JPH2 (junctophilin 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Jph2 (junctophilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Jph2 (junctophilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	JPH2 (junctophilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	JPH2 (junctophilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Jph2 (junctophilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	JPH2 (junctophilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	JPH2 (junctophilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Jph2 (junctophilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Jph2 (junctophilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	JPH2 (junctophilin 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Jph2 (junctophilin 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	jph2 (junctophilin 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	jph2 (junctophilin 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	jph-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	jph-1	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	jp	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	jp	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	jph2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	jph2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	172,414,246 - 172,478,678 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	172,414,256 - 172,478,348 (-)	Ensembl				GRCr8
mRatBN7.2	3	151,994,768 - 152,058,941 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	151,994,778 - 152,058,904 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	155,804,608 - 155,865,966 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	164,303,561 - 164,364,907 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	162,047,507 - 162,108,838 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	159,709,998 - 159,776,536 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	159,712,325 - 159,775,643 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	165,905,606 - 165,968,938 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	154,223,264 - 154,289,256 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	150,654,009 - 150,714,685 (-)	NCBI		Celera
RGSC_v3.1	3	154,129,305 - 154,195,865 (-)	NCBI
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cardiomyopathy (ISO)

dilated cardiomyopathy (ISO)

dilated cardiomyopathy 2E (ISO)

Dilated Cardiomyopathy with Left Ventricular Noncompaction (ISO)

familial hypertrophic cardiomyopathy (ISO)

hypertrophic cardiomyopathy (IEP,ISO)

hypertrophic cardiomyopathy 1 (ISO)

hypertrophic cardiomyopathy 17 (ISO)

hypertrophic cardiomyopathy 2 (ISO)

Left Ventricular Hypertrophy (ISO)

long QT syndrome (ISO)

Supraventricular Tachycardia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

alpha-Zearalanol (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (EXP,ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

buta-1,3-diene (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

cantharidin (ISO)

carvedilol (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

diisononyl phthalate (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (EXP,ISO)

genistein (ISO)

gentamycin (EXP)

GW 4064 (ISO)

methapyrilene (ISO)

metoprolol (ISO)

Moniliformin (ISO)

nickel atom (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

pioglitazone (ISO)

potassium dichromate (ISO)

prothioconazole (ISO)

razoxane (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

sodium dodecyl sulfate (ISO)

sulforaphane (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

triclosan (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium ion homeostasis (IEA,ISO)

negative regulation of DNA-templated transcription (ISS)

negative regulation of transcription by RNA polymerase II (ISS)

positive regulation of cytosolic calcium ion concentration (ISO)

regulation of cardiac muscle tissue development (IEA,ISO)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IBA,IEA)

junctional membrane complex (IBA,IEA,ISO)

membrane (IEA,ISO)

nucleus (IEA,ISO,ISS)

plasma membrane (IBA,IEA)

sarcoplasmic reticulum (IBA,IEA,ISO)

sarcoplasmic reticulum membrane (IEA)

Z disc (IEA,ISO)

Molecular Function

core promoter sequence-specific DNA binding (ISS)

DNA binding (IEA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (ISS)

phosphatidic acid binding (IEA,ISO,ISS)

phosphatidylinositol-3,4,5-trisphosphate binding (IEA,ISO,ISS)

phosphatidylinositol-3,5-bisphosphate binding (IEA,ISO,ISS)

phosphatidylinositol-3-phosphate binding (IEA,ISO,ISS)

phosphatidylinositol-4,5-bisphosphate binding (IEA,ISO,ISS)

phosphatidylinositol-4-phosphate binding (IEA,ISO,ISS)

phosphatidylinositol-5-phosphate binding (IEA,ISO,ISS)

phosphatidylserine binding (IEA,ISO,ISS)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Junctophilin type 2 is associated with caveolin-3 and is down-regulated in the hypertrophic and dilated cardiomyopathies.	Minamisawa S, etal., Biochem Biophys Res Commun. 2004 Dec 17;325(3):852-6.
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	T-tubule remodeling during transition from hypertrophy to heart failure.	Wei S, etal., Circ Res. 2010 Aug 20;107(4):520-31. Epub 2010 Jun 24.

Additional References at PubMed

PMID:10949023	PMID:20095964	PMID:22206666	PMID:22404946	PMID:23148318	PMID:23749380	PMID:24001019	PMID:28566298	PMID:30409805	PMID:31506724	PMID:31904168	PMID:32053184
PMID:35568981

Genomics

Comparative Map Data

Jph2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	172,414,246 - 172,478,678 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	172,414,256 - 172,478,348 (-)	Ensembl				GRCr8
mRatBN7.2	3	151,994,768 - 152,058,941 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	151,994,778 - 152,058,904 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	155,804,608 - 155,865,966 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	164,303,561 - 164,364,907 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	162,047,507 - 162,108,838 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	159,709,998 - 159,776,536 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	159,712,325 - 159,775,643 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	165,905,606 - 165,968,938 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	154,223,264 - 154,289,256 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	150,654,009 - 150,714,685 (-)	NCBI		Celera
RGSC_v3.1	3	154,129,305 - 154,195,865 (-)	NCBI
Cytogenetic Map	3	q42	NCBI

JPH2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	44,106,590 - 44,187,188 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	44,106,590 - 44,189,032 (-)	Ensembl			hg38	GRCh38
GRCh37	20	42,735,230 - 42,815,828 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	42,173,751 - 42,249,632 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	42,238,870 - 42,249,632	NCBI
Celera	20	39,448,942 - 39,524,817 (-)	NCBI		Celera
Cytogenetic Map	20	q13.12	NCBI
HuRef	20	39,477,014 - 39,552,742 (-)	NCBI		HuRef
CHM1_1	20	42,643,539 - 42,718,371 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	45,841,151 - 45,921,818 (-)	NCBI		T2T-CHM13v2.0

Jph2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	163,178,162 - 163,239,969 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	163,178,162 - 163,239,913 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	163,336,242 - 163,398,049 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	163,336,242 - 163,397,993 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	163,163,509 - 163,223,686 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	163,029,214 - 163,089,391 (-)	NCBI		MGSCv36	mm8
Celera	2	169,287,502 - 169,347,663 (-)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	84.22	NCBI

Jph2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	13,118,717 - 13,187,235 (+)	Ensembl
ChiLan1.0	NW_004955445	13,117,312 - 13,190,061 (+)	NCBI	ChiLan1.0	ChiLan1.0

JPH2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	49,844,353 - 49,919,539 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	49,832,341 - 49,912,624 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	40,439,975 - 40,517,438 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	41,535,153 - 41,610,760 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

JPH2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	31,664,106 - 31,674,487 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	31,665,771 - 31,687,228 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	31,306,256 - 31,370,751 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	32,371,015 - 32,435,719 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	32,372,671 - 32,434,938 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	31,634,424 - 31,698,906 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	31,746,535 - 31,811,045 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	32,288,966 - 32,353,673 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Jph2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	180,699,478 - 180,735,450 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936530	2,570,365 - 2,606,743 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JPH2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	17	46,590,302 - 46,665,326 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	51,928,578 - 51,971,531 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JPH2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	19,626,035 - 19,703,589 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	19,626,832 - 19,703,765 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	68,298,785 - 68,379,794 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Jph2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624790	10,250,472 - 10,319,110 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624790	10,250,403 - 10,320,279 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Jph2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	154,582,340 - 154,647,846 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	596
Count of miRNA genes:	259
Interacting mature miRNAs:	316
Transcripts:	ENSRNOT00000010939
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	166376089	177728348	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	166376089	189428310	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161799493	176036425	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	161799270	187311134	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	166376089	189428310	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat

Markers in Region

RH130464

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	151,994,910 - 151,995,107 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	159,710,141 - 159,710,337	NCBI	Rnor6.0
Rnor_5.0	3	165,905,749 - 165,905,945	UniSTS	Rnor5.0
RGSC_v3.4	3	154,221,080 - 154,221,276	UniSTS	RGSC3.4
Celera	3	150,651,825 - 150,652,021	UniSTS
RH 3.4 Map	3	1379.5	UniSTS
Cytogenetic Map	3	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	151	87	86	55	53	55	6	309	153	11	129	77	92	31	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ304564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010939 ⟹ ENSRNOP00000010938

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	172,414,256 - 172,478,348 (-)	Ensembl
mRatBN7.2 Ensembl	3	151,994,778 - 152,058,904 (-)	Ensembl
Rnor_6.0 Ensembl	3	159,712,325 - 159,775,643 (-)	Ensembl

RefSeq Acc Id:

NM_001037974 ⟹ NP_001033063

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	172,416,573 - 172,477,921 (-)	NCBI
mRatBN7.2	3	151,997,095 - 152,058,477 (-)	NCBI
Rnor_6.0	3	159,712,325 - 159,775,643 (-)	NCBI
Rnor_5.0	3	165,905,606 - 165,968,938 (-)	NCBI
RGSC_v3.4	3	154,223,264 - 154,289,256 (-)	RGD
Celera	3	150,654,009 - 150,714,685 (-)	RGD

Sequence:

show sequence

CAAGCTGGAGGACGGAGGAGTTGTCAGGAGCGAGGATGAGATGAGCGGGGGCCGCTTTGACTTT
GATGATGGCGGGGCGTATTGTGGGGGCTGGGAAGGGGGGAAGGCACATGGGCACGGACTGTGCA
CCGGCCCTAAGGGCCAAGGTGAATACTCGGGCTCCTGGAATTTTGGCTTTGAAGTGGCAGGCGT
CTACACCTGGCCCAGTGGGAATACCTTTGAGGGATATTGGAGCCAGGGCAAACGACATGGACTT
GGCATAGAGACCAAGGGGCGATGGCTCTACAAGGGGGAGTGGACACATGGCTTCAAGGGGCGCT
ACGGAATCCGGCAGAGCACAAACAGTGGTGCCAAGTACGAGGGCACTTGGAATAACGGCCTACA
GGATGGTTATGGCACGGAGACCTATGCAGACGGAGGGACCTACCAAGGCCAATTCACCAACGGC
ATGCGGCATGGCTACGGCGTGCGCCAAAGCGTGCCCTACGGGATGGCAGTGGTGGTGCGCTCCC
CGCTGCGCACCTCGCTGTCCTCGCTGCGCAGCGAGCACAGCAATGGCACAGTGGCTCCAGACTC
GCCGGCGGCAGACGGGCCCACGCTGCCCTTGCCCCCGGTGCCGCGTGGTGGCTTCGCGCTCAGC
CTACTGGCCACGGCCGAGGCTGCGCGTCCCCCAGGGCTGTTCACACGAGGCGCACTGCTGGGTC
GACTGCGACGCTCAGAGTCACGCACGTCGCTGGGCAGCCAGCGCAGCCGCTTGAGCTTCCTCAA
GAGCGAGCTGAGCTCAGGAGCCAGCGATGCCGCGTCCACCGGCAGCCTGGCCGAAGGCGCCGAG
GGCCCTGACGACGCGGCTGCACCCTTCGACGCCGACATCGACGCCACCACCACGGAGACCTACA
TGGGCGAGTGGAAGAACGACAAACGCTCGGGCTTCGGTGTGAGCGAACGTTCCAGCGGCCTTCG
CTACGAGGGCGAGTGGCTGGACAACCTGCGCCACGGTTACGGTCGCACCACGCTGCCCGACGGC
CACCGCGAGGAGGGCAAGTACCGCCACAATGTGCTGGTCAAGGGCACCAAGCGCCGCGTGCTGC
CGCTCAAGAGCAACAAGGTTCGCCAGAAGGTGGAGCATGGGGTCGAGGGTGCGCAACGCGCAGC
AGCCATTGCGCGCCAGAAGGCTGAGATTGCTGCCTCCAGGACAAGCCATGCCAAAGCCAAGGCC
GAGGCAGCAGAACAGGCTGCCCTGGCTGCCAACCAGGAGTCCAACATTGCCCGTACATTGGCCA
AGGAGCTGGCTCCAGACTTCTACCAGCCAGGTCCGGAGTATCAGAAGCGTCGGCTGCTCCAGGA
GATCCTGGAGAACTCAGAGAGCCTGCTGGAGCCCCGGGAGCGGGGCCCGGGCACCGGCCTCCCC
GAACGGCCCCGGGAAAGCCCACAGCTGCATGAGCGCGAGACCCCGCAGCCGGAGGGCGGACCCC
CTTCCCCGGCCGGAACGCCCCCGCAACCCAAGAGACCCCGGCCGGGATCGTCAAAGGACGGTCT
GCTGAGTCCGGGTGCCTGGAACGGCGAGCCCGGTGGAGAGGGCAGCCGGCCCGCCACGCCATCG
GATGGCGCCGGCCGTCGTAGCCCCGCGCGTCCGGCTTCGGAGCACATGGCCATCGAGGCGCTGC
AGCCACCGCCCGCGCCCTCGCGGGAGCCTGAGGTGGCACTGTACCGCGGTTACCACAGCTACGC
TGTGCGCACCGGGCCACCCGAGCCCCCGCCCTTGGAGGATGAGCCCGAGCCCGAGCCCGAGGTC
CCGCGATCCGACTCGGAGCCCCCGTCCCCCGTCTCCGCCACGGTCCAGGAAGAGGAGTCCCCTG
CGCCGCGAAGCCGGGTGCCCGCCAAGCCCGCCACCTTGGAGCCCAAGCCCATAGTCCCCAAAGC
CGAGCCCAAGGCCAAGGCGCGCAAGACAGAGGCCCGCGGGCTGAGCAAGGCGGGTGCCAAGAAG
AAGGGCCGGAAAGAAGTGGCACAGGAGGCCGAGGCCGAGGTGGAGGTAGAGGAGGTCCCCAACA
CCGTCCTCATCTGTATGGTGATCCTGCTGAACATCGGCCTGGCTATCCTATTCGTTCACCTCCT
GACTTGACCCTCATC

hide sequence

RefSeq Acc Id:

XM_006235526 ⟹ XP_006235588

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	172,414,246 - 172,478,678 (-)	NCBI
mRatBN7.2	3	151,994,768 - 152,058,941 (-)	NCBI
Rnor_6.0	3	159,709,998 - 159,776,536 (-)	NCBI
Rnor_5.0	3	165,905,606 - 165,968,938 (-)	NCBI

Sequence:

show sequence

CTGGATACTTCAATGGGATTGGCAGAGGCTCCAAAGCCCCAGGTCCTGCCAGGACATGCTCGAA
GTAGTAGGGCCCCATGTCTGCCACCCCCTGCACTCTGGGGATATGACGTGGCCCTGGATAAGAC
AGTCCGCTGGTCTGCTGGTCTCAGTCTGTTCTCCCTGCCTGCGGATCCTGGGGACTCCTAGATG
GGAGGCAGCTCTGACCCACAGGAAGGCAAGCCATCAAGTAGCTAGGCTGTCCACATTTGGTTCT
CAGATTTCCTGTTCAGCCCCCTCGGGCCAATGCCTGGGTCTGCAGGCCCAGCGGATTGGAAGCC
CCCCTCCCTCCGGCTCTGAAGAAGGCTGGGCCAACCAGGGGGTTATTTTGGGAGCAGCTTCTGA
GATCCAATGGCCTTGTTAGGGCAACACTGACCTTTCTATCCTGGGAGGAAGGCAGGGCTGGAGA
AGGGGCGGGGCAGCTGGGAGATCGGAGCCGCACGCCCACTGGGGTGGATGAGAAGGGGGCCAGC
GGCTGCTTCAGGGTGGGTGGCGGGAATTCAGCCTCGGCTGGGCTGCTAAACAGGGAATTGTCCC
TCTTTGAAAAGACAGGACCCCTCAACTTTTTTCGTTGCTTTCTTAAGGAGAGCTCACCGGACTC
CATGGAAGCAGAACCTGGGACGCTTTGTGGGAACTTCGAGTCTCTTCGGTCTGCTTCCTTTTTA
AGTTACTGCCTTGCTGGGATGATTGAGGGGGCCTCTCAGCCATGGCACTGACCAGCGCCCCCAC
TGCTGACTTGGCCTTTGGGCTTTTTCTGCCTCTGCTGGCATTTTACTTTTCCCCACCTCGAGCC
CGGTGCTGAGTCTAGGGGCTCAGTCTGAAGGTGCCTGGAGAGCATCAGGTACCCCTACGCCCAA
GCTGGAGGACGGAGGAGTTGTCAGGAGCGAGGATGAGATGAGCGGGGGCCGCTTTGACTTTGAT
GATGGCGGGGCGTATTGTGGGGGCTGGGAAGGGGGGAAGGCACATGGGCACGGACTGTGCACCG
GCCCTAAGGGCCAGGGTGAATACTCGGGCTCCTGGAATTTTGGCTTTGAAGTGGCAGGCGTCTA
CACCTGGCCCAGTGGGAATACCTTTGAGGGATATTGGAGCCAGGGCAAACGACATGGACTTGGC
ATAGAGACCAAGGGGCGATGGCTCTACAAGGGGGAGTGGACACATGGCTTCAAGGGGCGCTACG
GAATCCGGCAGAGCACAAACAGTGGTGCCAAGTACGAGGGCACTTGGAATAACGGCCTACAGGA
TGGTTATGGCACGGAGACCTATGCAGACGGAGGGACCTACCAAGGCCAATTCACCAACGGCATG
CGGCATGGCTACGGCGTGCGCCAAAGCGTGCCCTACGGGATGGCAGTGGTGGTGCGCTCCCCGC
TGCGCACCTCGCTGTCCTCGCTGCGCAGCGAGCACAGCAATGGCACAGTGGCTCCAGACTCGCC
GGCGGCAGACGGGCCCACGCTGCCCTTGCCCCCGGTGCCGCGTGGTGGCTTCGCGCTCAGCCTA
CTGGCCACGGCCGAGGCTGCGCGTCCCCCAGGGCTGTTCACACGAGGCGCACTGCTGGGTCGAC
TGCGACGCTCAGAGTCACGCACGTCGCTGGGCAGCCAGCGCAGCCGCTTGAGCTTCCTCAAGAG
CGAGCTGAGCTCAGGAGCCAGCGATGCCGCGTCCACCGGCAGCCTGGCCGAAGGCGCCGAGGGC
CCTGACGACGCGGCTGCACCCTTCGACGCCGACATCGACGCCACCACCACGGAGACCTACATGG
GCGAGTGGAAGAACGACAAACGCTCGGGCTTCGGTGTGAGCGAACGTTCCAGCGGCCTTCGCTA
CGAGGGCGAGTGGCTGGACAACCTGCGCCACGGTTACGGTCGCACCACGCTGCCCGACGGCCAC
CGCGAGGAGGGCAAGTACCGCCACAATGTGCTGGTCAAGGGCACCAAGCGCCGCGTGCTGCCGC
TCAAGAGCAACAAGGTTCGCCAGAAGGTGGAGCATGGGGTCGAGGGTGCGCAACGCGCAGCAGC
CATTGCGCGCCAGAAGGCTGAGATTGCTGCCTCCAGGACAAGCCATGCCAAAGCCAAGGCCGAG
GCAGCAGAACAGGCTGCCCTGGCTGCCAACCAGGAGTCCAACATTGCCCGTACATTGGCCAAGG
AGCTGGCTCCAGACTTCTACCAGCCAGGTCCGGAGTATCAGAAGCGTCGGCTGCTCCAGGAGAT
CCTGGAGAACTCAGAGAGCCTGCTGGAGCCCCGGGAGCGGGGCCCGGGCACCGGCCTCCCCGAA
CGGCCCCGGGAAAGCCCACAGCTGCATGAGCGCGAGACCCCGCAGCCGGAGGGCGGACCCCCTT
CCCCGGCCGGAACGCCCCCGCAACCCAAGAGACCCCGGCCGGGATCGTCAAAGGACGGTCTGCT
GAGTCCGGGTGCCTGGAACGGCGAGCCCGGTGGAGAGGGCAGCCGGCCCGCCACGCCATCGGAT
GGCGCCGGCCGTCGTAGCCCCGCGCGTCCGGCTTCGGAGCACATGGCCATCGAGGCGCTGCAGC
CACCGCCCGCGCCCTCGCGGGAGCCTGAGGTGGCACTGTACCGCGGTTACCACAGCTACGCTGT
GCGCACCGGGCCACCCGAGCCCCCGCCCTTGGAGGATGAGCCCGAGCCCGAGCCCGAGGTCCCG
CGATCCGACTCGGAGCCCCCGTCCCCCGTCTCCGCCACGGTCCAGGAAGAGGAGTCCCCTGCGC
CGCGAAGCCGGGTGCCCGCCAAGCCCGCCACCCTGGAGCCCAAGCCCATAGTCCCCAAAGCCGA
GCCCAAGGCCAAGGCGCGCAAGACAGAGGCCCGCGGGCTGAGCAAGGCGGGTGCCAAGAAGAAG
GGCCGGAAAGAAGTGGCACAGGAGGCCGAGGCCGAGGTGGAGGTAGAGGAGGTCCCCAACACCG
TCCTCATCTGTATGGTGATCCTGCTGAACATCGGCCTGGCTATCCTATTCGTTCACCTCCTGAC
TTGACCCTCATCTACCAGAACCACTGAGGATGCCAGGACCTGTCTTTCTGCAGTGCCAAGCAGG
TGTCCCAGGAGGATGGGACTGCGGACCTAAAGCCTTGCTCACATCCACTCCATGGACATTTAAG
GAGGCCTCCCGTGAGCCCATGCTGGGTGCCGGGGTGCCAGAGGAAGAGAATGTCTAGGTACCCT
CCGGGGTAAAGGATGCCCCGAGGGAGTAGCCCTGGTCTCCCGAACCCCTTTGCTCCTGCACCTG
TCCTCAGTCCTGCCCCACTTTGCCCTGCCACCCTTCCCTGGGCTTTTGTGCGTTTTGAGAGATA
TCACGAAAGCAAGATATTCATACAGATCTCTCCCTCTTCCTCCTACCCTACCCCCAACCTAGTC
CTCTGGCTGATGGCTTGAGGCCACGCAGAAAGACAAAGGGTGCAGATGTCCCTTGGGTAGTGCA
GTCACTCCCCCAGCCTATACTGCTCAGAGTTCACAGACTTCTGGAGGGCAGCGTAGGAAACAGA
GAAGCCCAGTTGAATATCCTCCAACCAGTCCAGTTGTCATCCCCTAGGACCAGTAGTGGGGGAG
ACCTGAGCATCTGAGCCTTTGGCTGGGAAGCCACCTAAAGGGGTCTGGGGTGGGGTGGAGAAGG
TTAGGCATGTTGGTGATGGCCCCTAATTCTGAGTGTGTCTGAGCCTGAGGCAGGAGTTCATTTA
GGGTCATAGATGTTCCCTGGGCATTTCGTAGGAGCTCTGCGTCTGAGAGCTACGGCTACTGTGA
TGTCCTATGAATTGGCTTATCCCTGTCCCCCGTCGAAGCCACATTGGGATCAGGGGAGCATGGC
ACGGAAATCTGTGGAAGTCGAGAGCTGTATCCCCTGGTGCGCATTCTCTGGCAGAGGCTGGAGA
CAAGCGCTGTGCAGGAGACGGGAGCAAGTCTGGGCTCTAGCCAGATGCGGCCTGTGCAACAATG
AATCATGCTTGGCAAAAGGTTTACCCGCATGCACCTCACTTAAAGAAGTTTGCACCACACTGTG
TGTCCCGGCCCTCAGGCTTGCTGGGTATAGCATGGCAGCTCAGGACAAGTGGCTCCCCATTCCC
AGGAGGGTGGAAGGAAAGAGTCGCAGGCCCCTCGAGTTTAGGGAAGAGGAGGCGACGGCATCCA
CACTGAGCTGGAGGAAGCTATTGGTCCTCTGACTTTGGACCTCTCGGACTTGAGCATGGAAGCC
AGGTATCCTCCCAGGGCAACGTTGAACCTACATATTGGGGGTCAGCTTCCTTTTCTTCTCAGTC
CACGGGCACCTTCTCCTCTAGAGTCACACTGGCTGCTCCTAGCTCTGCTGGGGCCTGGTGGTTT
GGTTGGAATTGCTTTTCTACTGACAGGAGCCTGCGGATGCTCTTGTACCTGCCAGCGTAGGCAG
GGCTCTGCCTCTGGTTGGGTTTTCCTGGATTCTAGGGAGTAAGGGGGTGACAGGCCCTCGGCCT
TGGTTCTGAGGTCATTGCTCTCCACTCTGGGTGCGGTCCAGGCCTGAGAACAAGCTTGTCACTG
TCAGAGCTATCAGAGCTGTTTTAGGGGATATGGGTTGAAGGGTTAGGGTTCAGGATGCCAAGTC
TGTGCCAAAATAAATCCGCATATGCTCACAAGTTCAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001033063	(Get FASTA)	NCBI Sequence Viewer
	XP_006235588	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABC02402	(Get FASTA)	NCBI Sequence Viewer
	EDL96587	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010938
	ENSRNOP00000010938.2
GenBank Protein	Q2PS20	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001033063 ⟸ NM_001037974

- UniProtKB:

Q2PS20 (UniProtKB/Swiss-Prot), A6JX22 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNTFEGYW
SQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSTNSGAKYEGTWNNGLQDGYGTETYADGGT
YQGQFTNGMRHGYGVRQSVPYGMAVVVRSPLRTSLSSLRSEHSNGTVAPDSPAADGPTLPLPPV
PRGGFALSLLATAEAARPPGLFTRGALLGRLRRSESRTSLGSQRSRLSFLKSELSSGASDAAST
GSLAEGAEGPDDAAAPFDADIDATTTETYMGEWKNDKRSGFGVSERSSGLRYEGEWLDNLRHGY
GRTTLPDGHREEGKYRHNVLVKGTKRRVLPLKSNKVRQKVEHGVEGAQRAAAIARQKAEIAASR
TSHAKAKAEAAEQAALAANQESNIARTLAKELAPDFYQPGPEYQKRRLLQEILENSESLLEPRE
RGPGTGLPERPRESPQLHERETPQPEGGPPSPAGTPPQPKRPRPGSSKDGLLSPGAWNGEPGGE
GSRPATPSDGAGRRSPARPASEHMAIEALQPPPAPSREPEVALYRGYHSYAVRTGPPEPPPLED
EPEPEPEVPRSDSEPPSPVSATVQEEESPAPRSRVPAKPATLEPKPIVPKAEPKAKARKTEARG
LSKAGAKKKGRKEVAQEAEAEVEVEEVPNTVLICMVILLNIGLAILFVHLLT

hide sequence

RefSeq Acc Id:

XP_006235588 ⟸ XM_006235526

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNTFEGYW
SQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSTNSGAKYEGTWNNGLQDGYGTETYADGGT
YQGQFTNGMRHGYGVRQSVPYGMAVVVRSPLRTSLSSLRSEHSNGTVAPDSPAADGPTLPLPPV
PRGGFALSLLATAEAARPPGLFTRGALLGRLRRSESRTSLGSQRSRLSFLKSELSSGASDAAST
GSLAEGAEGPDDAAAPFDADIDATTTETYMGEWKNDKRSGFGVSERSSGLRYEGEWLDNLRHGY
GRTTLPDGHREEGKYRHNVLVKGTKRRVLPLKSNKVRQKVEHGVEGAQRAAAIARQKAEIAASR
TSHAKAKAEAAEQAALAANQESNIARTLAKELAPDFYQPGPEYQKRRLLQEILENSESLLEPRE
RGPGTGLPERPRESPQLHERETPQPEGGPPSPAGTPPQPKRPRPGSSKDGLLSPGAWNGEPGGE
GSRPATPSDGAGRRSPARPASEHMAIEALQPPPAPSREPEVALYRGYHSYAVRTGPPEPPPLED
EPEPEPEVPRSDSEPPSPVSATVQEEESPAPRSRVPAKPATLEPKPIVPKAEPKAKARKTEARG
LSKAGAKKKGRKEVAQEAEAEVEVEEVPNTVLICMVILLNIGLAILFVHLLT

hide sequence

Ensembl Acc Id:

ENSRNOP00000010938 ⟸ ENSRNOT00000010939

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q2PS20-F1-model_v2	AlphaFold	Q2PS20	1-692	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305196	AgrOrtholog
BioCyc Gene	G2FUF-46918	BioCyc
Ensembl Genes	ENSRNOG00000008170	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000010939	ENTREZGENE
	ENSRNOT00000010939.6	UniProtKB/Swiss-Prot
Gene3D-CATH	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	UniProtKB/Swiss-Prot
InterPro	Junctophilin	UniProtKB/Swiss-Prot
	MORN	UniProtKB/Swiss-Prot
KEGG Report	rno:296345	UniProtKB/Swiss-Prot
NCBI Gene	296345	ENTREZGENE
PANTHER	JUNCTOPHILIN-2	UniProtKB/Swiss-Prot
	PTHR23085	UniProtKB/Swiss-Prot
Pfam	MORN	UniProtKB/Swiss-Prot
PhenoGen	Jph2	PhenoGen
PIRSF	Junctophilin	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000008170	RatGTEx
SMART	MORN	UniProtKB/Swiss-Prot
Superfamily-SCOP	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	UniProtKB/Swiss-Prot
UniProt	A6JX22	ENTREZGENE, UniProtKB/TrEMBL
	JPH2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Jph2	junctophilin 2			Symbol and Name updated	1299863	APPROVED
2006-03-07	Jph2	junctophilin 2	Jph2_predicted	junctophilin 2 (predicted)	Symbol and Name status set to approved	1299863	APPROVED
2005-01-12	Jph2_predicted	junctophilin 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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