JPH2 (junctophilin 2) - Rat Genome Database

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Gene: JPH2 (junctophilin 2) Chlorocebus sabaeus
Analyze
Symbol: JPH2
Name: junctophilin 2
RGD ID: 18561875
Description: ENCODES a protein that exhibits core promoter sequence-specific DNA binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of cytosolic calcium ion concentration (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); dilated cardiomyopathy (ortholog); dilated cardiomyopathy 2E (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: junctophilin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1219,626,035 - 19,703,589 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl219,626,832 - 19,703,765 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605068,298,785 - 68,379,794 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
JPH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1219,626,035 - 19,703,589 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl219,626,832 - 19,703,765 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605068,298,785 - 68,379,794 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JPH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382044,106,590 - 44,187,188 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2044,106,590 - 44,187,188 (-)EnsemblGRCh38hg38GRCh38
GRCh372042,735,230 - 42,815,828 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362042,173,751 - 42,249,632 (-)NCBINCBI36Build 36hg18NCBI36
Build 342042,238,870 - 42,249,632NCBI
Celera2039,448,942 - 39,524,817 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2039,477,014 - 39,552,742 (-)NCBIHuRef
CHM1_12042,643,539 - 42,718,371 (-)NCBICHM1_1
T2T-CHM13v2.02045,841,151 - 45,921,818 (-)NCBIT2T-CHM13v2.0
Jph2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392163,178,162 - 163,239,969 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2163,178,162 - 163,239,913 (-)EnsemblGRCm39 Ensembl
GRCm382163,336,242 - 163,398,049 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2163,336,242 - 163,397,993 (-)EnsemblGRCm38mm10GRCm38
MGSCv372163,163,509 - 163,223,686 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362163,029,214 - 163,089,391 (-)NCBIMGSCv36mm8
Celera2169,287,502 - 169,347,663 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map284.22NCBI
Jph2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83172,414,246 - 172,478,678 (-)NCBIGRCr8
mRatBN7.23151,994,768 - 152,058,941 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3151,994,778 - 152,058,904 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3155,804,608 - 155,865,966 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03164,303,561 - 164,364,907 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03162,047,507 - 162,108,838 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03159,709,998 - 159,776,536 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3159,712,325 - 159,775,643 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03165,905,606 - 165,968,938 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43154,223,264 - 154,289,256 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13154,129,305 - 154,195,865 (-)NCBI
Celera3150,654,009 - 150,714,685 (-)NCBICelera
Cytogenetic Map3q42NCBI
Jph2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544513,118,717 - 13,187,235 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544513,117,312 - 13,190,061 (+)NCBIChiLan1.0ChiLan1.0
JPH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22149,844,353 - 49,919,539 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12049,832,341 - 49,912,624 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02040,439,975 - 40,517,438 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12041,535,153 - 41,610,760 (-)NCBIpanpan1.1PanPan1.1panPan2
JPH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12431,664,106 - 31,674,487 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2431,665,771 - 31,687,228 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2431,306,256 - 31,370,751 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02432,371,015 - 32,435,719 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2432,372,671 - 32,434,938 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12431,634,424 - 31,698,906 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02431,746,535 - 31,811,045 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02432,288,966 - 32,353,673 (-)NCBIUU_Cfam_GSD_1.0
Jph2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640180,699,478 - 180,735,450 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365302,570,365 - 2,606,743 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JPH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11746,590,302 - 46,665,326 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21751,928,578 - 51,971,531 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Jph2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479010,250,472 - 10,319,110 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479010,250,403 - 10,320,279 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 1
Low 35 12 28
Below cutoff 6 32

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008016752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCSAT00000012181   ⟹   ENSCSAP00000010228
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl219,626,832 - 19,703,765 (+)Ensembl
RefSeq Acc Id: XM_008016752   ⟹   XP_008014943
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1219,626,035 - 19,703,589 (+)NCBI
Vero_WHO_p1.0NW_02366605068,298,785 - 68,379,794 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008014943 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010228.1
RefSeq Acc Id: XP_008014943   ⟸   XM_008016752
- UniProtKB: A0A0D9RNN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000010228   ⟸   ENSCSAT00000012181


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014091 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012181.1 UniProtKB/TrEMBL
Gene3D-CATH Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain UniProtKB/TrEMBL
InterPro Junctophilin UniProtKB/TrEMBL
  MORN UniProtKB/TrEMBL
KEGG Report csab:103245695 UniProtKB/TrEMBL
NCBI Gene JPH2 ENTREZGENE
PANTHER JUNCTOPHILIN-2 UniProtKB/TrEMBL
  PTHR23085 UniProtKB/TrEMBL
Pfam MORN UniProtKB/TrEMBL
PIRSF Junctophilin UniProtKB/TrEMBL
SMART MORN UniProtKB/TrEMBL
Superfamily-SCOP Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain UniProtKB/TrEMBL
UniProt A0A0D9RNN9 ENTREZGENE, UniProtKB/TrEMBL