Tppp3 (tubulin polymerization-promoting protein family member 3) - Rat Genome Database

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Gene: Tppp3 (tubulin polymerization-promoting protein family member 3) Rattus norvegicus
Analyze
Symbol: Tppp3
Name: tubulin polymerization-promoting protein family member 3
RGD ID: 1305061
Description: Predicted to enable tubulin binding activity. Predicted to be involved in several processes, including decidualization; embryo implantation; and microtubule cytoskeleton organization. Predicted to be located in microtubule bundle and perinuclear region of cytoplasm. Predicted to colocalize with microtubule. Orthologous to human TPPP3 (tubulin polymerization promoting protein family member 3); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CGI-38; LOC291966; MGC105620; RGD1305061; similar to RIKEN cDNA 2700055K07
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,255,809 - 50,259,655 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1950,255,810 - 50,259,489 (-)EnsemblGRCr8
mRatBN7.21933,345,897 - 33,349,610 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,345,898 - 33,349,577 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1940,161,487 - 40,165,153 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,814,815 - 40,818,481 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,105,458 - 43,109,125 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,424,323 - 37,428,075 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,424,324 - 37,427,989 (-)Ensemblrn6Rnor6.0
Rnor_5.01948,289,940 - 48,293,636 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41935,284,039 - 35,287,705 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1932,774,202 - 32,777,868 (-)NCBICelera
RGSC_v3.11935,288,920 - 35,292,586 (-)NCBI
Cytogenetic Map19q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
tubulin binding  (IBA,IEA,ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17105200   PMID:22871113   PMID:23376485   PMID:29901777   PMID:30667362  


Genomics

Comparative Map Data
Tppp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,255,809 - 50,259,655 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1950,255,810 - 50,259,489 (-)EnsemblGRCr8
mRatBN7.21933,345,897 - 33,349,610 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,345,898 - 33,349,577 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1940,161,487 - 40,165,153 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,814,815 - 40,818,481 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,105,458 - 43,109,125 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,424,323 - 37,428,075 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,424,324 - 37,427,989 (-)Ensemblrn6Rnor6.0
Rnor_5.01948,289,940 - 48,293,636 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41935,284,039 - 35,287,705 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1932,774,202 - 32,777,868 (-)NCBICelera
RGSC_v3.11935,288,920 - 35,292,586 (-)NCBI
Cytogenetic Map19q12NCBI
TPPP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,389,809 - 67,393,498 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,389,027 - 67,393,518 (-)Ensemblhg38GRCh38
GRCh371667,423,712 - 67,427,401 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,981,213 - 65,984,922 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1651,931,912 - 51,935,621 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,296,948 - 53,300,657 (-)NCBIHuRef
CHM1_11668,831,095 - 68,834,804 (-)NCBICHM1_1
T2T-CHM13v2.01673,184,580 - 73,188,269 (-)NCBIT2T-CHM13v2.0
Tppp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,194,124 - 106,198,189 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,194,125 - 106,198,158 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm388105,467,492 - 105,471,422 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,467,493 - 105,471,526 (-)Ensemblmm10GRCm38
MGSCv378107,991,392 - 107,995,322 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368108,356,621 - 108,360,496 (-)NCBIMGSCv36mm8
Celera8109,690,684 - 109,694,614 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Tppp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,246,734 - 9,250,293 (+)Ensembl
ChiLan1.0NW_0049554849,246,734 - 9,250,293 (+)NCBIChiLan1.0ChiLan1.0
TPPP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21876,919,479 - 76,923,243 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,832,147 - 82,835,922 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,735,260 - 47,738,959 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,124,224 - 67,127,928 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,124,224 - 67,127,919 (-)EnsemblpanPan2panpan1.1
TPPP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1582,007,708 - 82,011,321 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl582,007,730 - 82,011,139 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha581,997,227 - 82,000,890 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0582,442,874 - 82,446,547 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,442,946 - 82,456,118 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,269,006 - 82,272,679 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,950,114 - 81,953,769 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,593,564 - 82,597,217 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tppp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,740,145 - 41,743,879 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,845,235 - 17,849,060 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647517,845,235 - 17,849,694 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPPP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,045,438 - 28,046,998 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1628,045,433 - 28,051,141 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,312,516 - 25,316,184 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TPPP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,063,418 - 60,067,166 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl560,063,457 - 60,067,210 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604722,812,766 - 22,816,519 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tppp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,922,164 - 18,926,543 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474618,922,539 - 18,926,195 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tppp3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11725,196,246 - 25,199,981 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tppp3
25 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:56
Interacting mature miRNAs:68
Transcripts:ENSRNOT00000022863
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)191922068964220689Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19799775052997750Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)194622677874246245Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)193128753251431640Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19799775052997750Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)194072709254856850Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19799775052997750Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)19574806450748064Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19799775052997750Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)192010930665109306Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)194072709254856850Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)194072709254856850Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 355 192 11 141 80 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000022863   ⟹   ENSRNOP00000022863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1950,255,810 - 50,259,489 (-)Ensembl
mRatBN7.2 Ensembl1933,345,898 - 33,349,577 (-)Ensembl
Rnor_6.0 Ensembl1937,424,324 - 37,427,989 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104378   ⟹   ENSRNOP00000094931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1950,255,810 - 50,259,489 (-)Ensembl
mRatBN7.2 Ensembl1933,345,898 - 33,349,577 (-)Ensembl
RefSeq Acc Id: NM_001009639   ⟹   NP_001009639
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,255,809 - 50,259,475 (-)NCBI
mRatBN7.21933,345,897 - 33,349,563 (-)NCBI
Rnor_6.01937,424,323 - 37,427,989 (-)NCBI
Rnor_5.01948,289,940 - 48,293,636 (-)NCBI
RGSC_v3.41935,284,039 - 35,287,705 (-)RGD
Celera1932,774,202 - 32,777,868 (-)RGD
Sequence:
RefSeq Acc Id: XM_006255464   ⟹   XP_006255526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,255,809 - 50,259,655 (-)NCBI
mRatBN7.21933,345,897 - 33,349,610 (-)NCBI
Rnor_6.01937,424,323 - 37,428,075 (-)NCBI
Rnor_5.01948,289,940 - 48,293,636 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001009639 (Get FASTA)   NCBI Sequence Viewer  
  XP_006255526 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH87585 (Get FASTA)   NCBI Sequence Viewer  
  EDL92377 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000022863
  ENSRNOP00000022863.4
GenBank Protein Q5PPN5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001009639   ⟸   NM_001009639
- UniProtKB: Q5PPN5 (UniProtKB/Swiss-Prot),   A6IYP9 (UniProtKB/TrEMBL),   A0A8I6ANX0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255526   ⟸   XM_006255464
- Peptide Label: isoform X1
- UniProtKB: Q5PPN5 (UniProtKB/Swiss-Prot),   A6IYP9 (UniProtKB/TrEMBL),   A0A8I6ANX0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022863   ⟸   ENSRNOT00000022863
Ensembl Acc Id: ENSRNOP00000094931   ⟸   ENSRNOT00000104378

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PPN5-F1-model_v2 AlphaFold Q5PPN5 1-176 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701076
Promoter ID:EPDNEW_R11600
Type:single initiation site
Name:Tppp3_1
Description:tubulin polymerization-promoting protein family member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01937,428,003 - 37,428,063EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305061 AgrOrtholog
BioCyc Gene G2FUF-5830 BioCyc
Ensembl Genes ENSRNOG00000016890 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000022863 ENTREZGENE
  ENSRNOT00000022863.8 UniProtKB/Swiss-Prot
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7317980 IMAGE-MGC_LOAD
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot
  P25-alpha UniProtKB/Swiss-Prot
KEGG Report rno:291966 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105620 IMAGE-MGC_LOAD
NCBI Gene 291966 ENTREZGENE
PANTHER PTHR12932 UniProtKB/Swiss-Prot
  PTHR12932:SF16 UniProtKB/Swiss-Prot
Pfam p25-alpha UniProtKB/Swiss-Prot
PhenoGen Tppp3 PhenoGen
RatGTEx ENSRNOG00000016890 RatGTEx
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot
UniProt A0A8I6ANX0 ENTREZGENE, UniProtKB/TrEMBL
  A6IYP9 ENTREZGENE, UniProtKB/TrEMBL
  Q5PPN5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Tppp3  tubulin polymerization-promoting protein family member 3  RGD1305061  similar to RIKEN cDNA 2700055K07  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1305061  similar to RIKEN cDNA 2700055K07  RGD1305061_predicted  similar to RIKEN cDNA 2700055K07 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1305061_predicted  similar to RIKEN cDNA 2700055K07 (predicted)  LOC291966_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC291966_predicted  similar to RIKEN cDNA 2700055K07 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL