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Gene: Net1 (neuroepithelial cell transforming 1) Rattus norvegicus

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Symbol:

Net1

Name:

neuroepithelial cell transforming 1

RGD ID:

1305034

Description:

Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in several processes, including cellular response to hydrogen peroxide; cellular response to ionizing radiation; and positive regulation of Rho protein signal transduction. Predicted to act upstream of or within myoblast migration. Predicted to be located in cytoplasm. Orthologous to human NET1 (neuroepithelial cell transforming 1); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC307098; MGC114559; neuroepithelial cell transforming gene 1; neuroepithelial cell-transforming gene 1 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NET1 (neuroepithelial cell transforming 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Net1 (neuroepithelial cell transforming gene 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Net1 (neuroepithelial cell transforming 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NET1 (neuroepithelial cell transforming 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NET1 (neuroepithelial cell transforming 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Net1 (neuroepithelial cell transforming 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NET1 (neuroepithelial cell transforming 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NET1 (neuroepithelial cell transforming 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Net1 (neuroepithelial cell transforming 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Net1 (neuroepithelial cell transforming 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ADAMTS3 (ADAM metallopeptidase with thrombospondin type 1 motif 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	NET1 (neuroepithelial cell transforming 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Net1 (neuroepithelial cell transforming gene 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	net1 (neuroepithelial cell transforming 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ROM1	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ROM2	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	net1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	net1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	71,251,145 - 71,280,345 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	71,251,149 - 71,289,270 (+)	Ensembl				GRCr8
mRatBN7.2	17	66,341,251 - 66,370,445 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	66,340,728 - 66,370,441 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	69,834,187 - 69,844,263 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	73,663,012 - 73,673,088 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	67,706,009 - 67,716,085 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	69,991,786 - 70,020,977 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	70,010,794 - 70,020,982 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	71,695,341 - 71,724,535 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	77,533,225 - 77,543,337 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	65,866,059 - 65,876,167 (+)	NCBI		Celera
RGSC_v3.1	17	77,525,117 - 77,552,726 (+)	NCBI
Cytogenetic Map	17	q12.2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Ependymomas (ISO)

long QT syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

calcitriol (ISO)

captan (ISO)

carbon nanotube (ISO)

chloropicrin (ISO)

chromium atom (ISO)

cisplatin (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diazinon (ISO)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (EXP)

diethylstilbestrol (ISO)

Diisodecyl phthalate (ISO)

dimethyl sulfoxide (ISO)

dioxygen (EXP)

disodium selenite (ISO)

doxorubicin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

fentin chloride (EXP)

fipronil (EXP)

folic acid (ISO)

folpet (ISO)

furan (EXP)

hydralazine (ISO)

indometacin (ISO)

ketoconazole (ISO)

lead diacetate (EXP)

leflunomide (ISO)

maneb (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

menadione (ISO)

methapyrilene (EXP)

methotrexate (ISO)

microcystin-LR (ISO)

N-ethyl-N-nitrosourea (ISO)

N-nitrosodiethylamine (ISO)

nefazodone (EXP)

nickel sulfate (ISO)

nicotinic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenethyl isothiocyanate (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

piroxicam (ISO)

potassium dichromate (ISO)

quercetin (ISO)

silicon dioxide (EXP)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

sunitinib (ISO)

temozolomide (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to hydrogen peroxide (ISO)

cellular response to ionizing radiation (ISO)

intracellular signal transduction (IEA)

myoblast migration (ISO)

positive regulation of apoptotic process (ISO)

positive regulation of GTPase activity (ISO)

positive regulation of Rho protein signal transduction (IBA)

positive regulation of substrate adhesion-dependent cell spreading (ISO)

Cellular Component

cytoplasm (IEA)

nucleus (ISO)

plasma membrane (ISO)

Molecular Function

guanyl-nucleotide exchange factor activity (IEA)

protein binding (ISO)

small GTPase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:21373644	PMID:22206666	PMID:22987639	PMID:23184663

Genomics

Comparative Map Data

Net1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	71,251,145 - 71,280,345 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	71,251,149 - 71,289,270 (+)	Ensembl				GRCr8
mRatBN7.2	17	66,341,251 - 66,370,445 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	66,340,728 - 66,370,441 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	69,834,187 - 69,844,263 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	73,663,012 - 73,673,088 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	67,706,009 - 67,716,085 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	69,991,786 - 70,020,977 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	70,010,794 - 70,020,982 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	71,695,341 - 71,724,535 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	77,533,225 - 77,543,337 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	65,866,059 - 65,876,167 (+)	NCBI		Celera
RGSC_v3.1	17	77,525,117 - 77,552,726 (+)	NCBI
Cytogenetic Map	17	q12.2	NCBI

NET1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	5,412,557 - 5,459,056 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	5,412,557 - 5,459,056 (+)	Ensembl			hg38	GRCh38
GRCh37	10	5,454,520 - 5,501,019 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	5,444,518 - 5,490,426 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	5,478,582 - 5,490,401	NCBI
Celera	10	5,385,186 - 5,430,983 (+)	NCBI		Celera
Cytogenetic Map	10	p15.1	NCBI
HuRef	10	5,383,734 - 5,430,137 (+)	NCBI		HuRef
CHM1_1	10	5,454,522 - 5,500,985 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	5,415,941 - 5,462,403 (+)	NCBI		T2T-CHM13v2.0

Net1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	3,932,018 - 3,968,220 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	3,932,018 - 3,968,220 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	3,882,018 - 3,918,220 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	3,882,018 - 3,918,220 (-)	Ensembl			mm10	GRCm38
MGSCv37	13	3,881,807 - 3,917,466 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	3,882,582 - 3,917,357 (-)	NCBI		MGSCv36	mm8
Celera	13	3,867,365 - 3,905,036 (-)	NCBI		Celera
Cytogenetic Map	13	A1	NCBI
cM Map	13	2.17	NCBI

Net1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	22,105,257 - 22,156,292 (+)	Ensembl
ChiLan1.0	NW_004955421	22,105,292 - 22,154,368 (+)	NCBI	ChiLan1.0	ChiLan1.0

NET1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	17,969,380 - 18,014,733 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	17,974,701 - 18,019,310 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	5,457,920 - 5,503,223 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	5,444,213 - 5,489,509 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	5,444,127 - 5,489,509 (+)	Ensembl			panPan2	panpan1.1

NET1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	30,450,946 - 30,463,280 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	30,450,965 - 30,492,074 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	27,480,707 - 27,541,903 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	30,832,019 - 30,844,120 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	30,830,531 - 30,892,820 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	27,926,665 - 27,988,941 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	28,764,938 - 28,826,045 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	29,481,270 - 29,543,633 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Net1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	32,862,324 - 32,891,380 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	9,027,515 - 9,056,600 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	9,027,515 - 9,056,571 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NET1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	65,425,011 - 65,459,754 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	65,428,013 - 65,438,346 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	71,541,976 - 71,577,001 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NET1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	5,547,275 - 5,579,006 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	5,567,225 - 5,577,539 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666051	10,789,221 - 10,834,937 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Net1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	224,297 - 262,630 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624775	223,832 - 260,623 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Net1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	18,200,930 - 18,230,184 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Net1
309 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	197
Count of miRNA genes:	135
Interacting mature miRNAs:	165
Transcripts:	ENSRNOT00000023945
Prediction methods:	Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70210	Cm15	Cardiac mass QTL 15	6.5		heart right ventricle mass (VT:0007033)	heart right ventricle wet weight (CMO:0000072)	17	30066472	75066472	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	42388164	87388164	Rat
631502	Cm26	Cardiac mass QTL 26	3.71		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	70613502	86062352	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	58194064	87388164	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	33104645	78104645	Rat
1354654	Spl7	Serum phospholipid level QTL 7	5.5		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	17	38031354	83031354	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	54829503	93515804	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40968017	89341781	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27233445	83975845	Rat
1354629	Scl31	Serum cholesterol level QTL 31	4.1		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	17	38031354	83031354	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	26522051	71522051	Rat
1600398	Edcs5	Endometrial carcinoma susceptibility QTL 5	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	17	35446949	75762341	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24390595	84432719	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	38031354	83031354	Rat
61466	Niddm12	Non-insulin dependent diabetes mellitus QTL 12	3.2	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	65154872	93515804	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	38031354	83031354	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	33104645	78104645	Rat
12904736	Cm121	Cardiac mass QTL 121		0.043	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	42388164	87388164	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	46050126	91050126	Rat
4889891	Eae32	Experimental allergic encephalomyelitis QTL 32	4.8	0.0002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	27233445	72233445	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	55604597	93006569	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	42654895	87654895	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	37687877	82687877	Rat
1300131	Bp193	Blood pressure QTL 193	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	68550040	93515804	Rat
7488963	Bp369	Blood pressure QTL 369		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	63697147	82818564	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	41062352	86062352	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	32199534	86201342	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			24136127	84432719	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	36045537	81045537	Rat
2302365	Gluco40	Glucose level QTL 40	4.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	64569820	86954580	Rat

Markers in Region

RH128810

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	66,370,122 - 66,370,316 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	70,020,655 - 70,020,848	NCBI	Rnor6.0
Rnor_5.0	17	71,724,213 - 71,724,406	UniSTS	Rnor5.0
RGSC_v3.4	17	77,543,015 - 77,543,208	UniSTS	RGSC3.4
Celera	17	65,875,845 - 65,876,038	UniSTS
RH 3.4 Map	17	635.5	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001039023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC100154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023945 ⟹ ENSRNOP00000023945

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	71,270,030 - 71,280,341 (+)	Ensembl
mRatBN7.2 Ensembl	17	66,360,333 - 66,370,441 (+)	Ensembl
Rnor_6.0 Ensembl	17	70,010,794 - 70,020,982 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094324 ⟹ ENSRNOP00000092157

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	71,251,439 - 71,280,341 (+)	Ensembl
mRatBN7.2 Ensembl	17	66,340,728 - 66,370,441 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000125687 ⟹ ENSRNOP00000099697

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	71,270,154 - 71,280,341 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000148858 ⟹ ENSRNOP00000107680

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	71,270,030 - 71,289,270 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000166664 ⟹ ENSRNOP00000110663

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	71,272,797 - 71,280,341 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000170244 ⟹ ENSRNOP00000102206

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	71,251,149 - 71,280,341 (+)	Ensembl

RefSeq Acc Id:

NM_001039023 ⟹ NP_001034112

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	71,270,233 - 71,280,345 (+)	NCBI
mRatBN7.2	17	66,360,333 - 66,370,445 (+)	NCBI
Rnor_6.0	17	70,010,865 - 70,020,977 (+)	NCBI
Rnor_5.0	17	71,695,341 - 71,724,535 (+)	NCBI
RGSC_v3.4	17	77,533,225 - 77,543,337 (+)	RGD
Celera	17	65,866,059 - 65,876,167 (+)	RGD

Sequence:

show sequence

CCGGCGTCTTGGCGGTGTTGCCCTGCAGGGCTGACTCGCATGTGGACTAACCCGAAAGACTTGA
AGGGACACTTGTAAAGCATGGTGGCGCATGATGAGATCGGAGGTCTCCTGCCCATTAAAAGGAC
GATCCGGGTCTTAGATGTTAATAACCAGCCCTTCAGGGAGCAGGAGGAGCCAAGCAATAAAAGA
GTTCGGCCCCTAGGTCGGGTCACATCCTTGGCAAACTTAATCTCTCCCGTAAGAAATGGAGCAG
TCAGGCGCTTTGGTCAGACCATACAGTCCTTTACCCTTCGTGGTGACCACAGATCTCCAGCCTC
TACCCAGAAGTCATTCAGCAGGGCCACAGTCCCTACACCCACCAAGAGAAGAAGCAGTGCACTA
TGGTCGGAGATGCTAGACATCAGTATGAAGGAGTCCTTGACCACTCGAGAGATCAAACGACAGG
AGGCAATATATGAATTGTCCCGAGGAGAACAGGACTTAATCGAGGATCTCAAGCTCGCTAGAAA
GGCCTACCATGACCCCATGTTAAAGCTGTCCATCATGTCAGAAGAGGAGCTCACACATATATTT
GGAGACCTGGATGCTTACATCCCTCTACACGAAGATCTGTTAGCAAGAATAGGAGAAGCAACCA
AGCCTGACGGGACCGTGGAACAGATCGGTCACATTCTCGTGAATTGGTTACCAGGCCTGAACGC
CTACAGAGGCTACTGTAGCAACCAGCTGGCGGCCAAGGCTCTTCTGGATCAGAAGAAACAGGAC
CCACGAGTCCAAGACTTCCTCCAGCGCTGTCTGGAGTCTCCCTTCAGTCGAAAGCTAGATCTTT
GGAGTTTCCTAGATATTCCTCGAAGTCGCCTCGTCAAGTACCCCTTGCTGTTAAAAGAAATCCT
TAGACATACGCCCAAAGACCACCTCGATGTTCAGCTTCTGGAGAAAGCAATTTTAATAATACAA
GAAGTTCTTTCTGATATCAACTTGAAGAAAGGCGAATCCGAGTGTCAGTATTACATCGACAAAC
TGGAGTACCTGGATGAGAAGCAGAAGGACCCCAGGATCGAGGCGAGCAAGGTGCTGCTGTGTCA
TGGGGAGCTGAAGAATAAAAGTGGCCATAAACTGTACATTTTCTTATTTCAAGACATCTTGGTT
TTGACTCGGCCTGTCACCCGAAATGAGCGCCACTCCTACCAGGTTTACCGCCAGCCCATCCCAG
TGCAGGAGCTGGTGCTGGAAGACCTGCAGGACGGGGATGTGCGCATGGGCGGCTCCTTCCGAGG
GGCCTTTGGCAACTCAGACAAAGCTAAAAATATCTTTAGAGTGCGCTTCCAGGACCCTTCTCCA
GGCCAGTCCCACACACTGCAAGCCAACGATGTGTTCCACAAGCAGCAGTGGTTCAACTGCATTC
GCTCGGCCATCGCCCCTTTCCAGCGGGCCGCCAGCCCCCTCGAGCTGCAGGGCTTGCCAGACCT
GCACGAAGAGTGTGAGGAGAACAACCCTTCTGCTGGGAATCTCAGAGCCCAGCGACGGTCATGC
GTGCTTCCTGGTGTTATGCAGGTAGACCATGAAAGTGTGCTGGAGTGTGGCTCGAGTGTACAGA
CCTCGGAGGACACCAGGAACGCAAAGGCACATCGGCCTCAGCATGGCCTGCGAAGAGCAAGGGA
CAAGGCGCAGTTGGGTGGCAAAAAGAAAGAGACTTTGGTATGAGTGTGTGTGTTCCCCGGTGGG
AGCTGTTTATTTATAAATGTGTACAGTTTTCTTGTAACGGGAGCGTCGAGGGCTACTCTGTACC
AGATGTAATATGTCCATGGATTGGGTCTCTCTCTCATCCTCTCCCTCTCCCTTCCTCCCCCCCC
CCAACCCCCACGTCCTCGTCTGCGTTGTCGTCATTGTCGTTGTTGTTAATGGCAGCTAAAGATA
CACAGGTTACTGTTAGAGTGAAGACTTTGAAGGGGTGTTTTCATGGATGGTGGCTTTTATCAGA
AGAAATGTGGCAGAACCAGTGTCGTCCATGCTGGTAGACCGTGACTTTCCACCAAATGCCAGTG
TTTGCCAAGCTTAAACCTTGCAAATGCTGAAGTTCCGTCAGCGTTCTTTGTTAGAGCTCAGGTG
GAGTGCGGAATTTTAATAATGACACCTGCAGTCTACATGGGCGAGGTCTGAGTTTGAAATATTT
CATATTTACAGGGAGCGCTGCTTCCTTGGAGAACAAGCATAAAGCCTGTTGTCTTCCCCTTTTC
TCAACTGGAACGAACGAACGAACACCGTGTCAGTCTCACACGGTTCTCCTTCTCCATTCATTCA
TTCTGCCAACTATTTAATTTTTTTTTATTGTAAAGTAGTTTTTAGTATTTGCTTTTATTTTTTT
ACGTTGATGCCTTTTTAAATTGGCATATCCTTGAAGTTTTTCCTCCTGATTTTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCATATTAATTTTATCAAGTGAAACCAAGC
CATATTGTTTGAGCCAATTAAGAAAACAGCAGTTTTTACAGTGTATCATGTCAGGGTGATAAAG
TCCCATGAAATGACTTAGTGTATTCTAGACTACTGAAAGAAACCACAGGAAGGGTGGGTGGAAG
TTTTTGTGTTGTCAGAAAAGCAAGAGAGAAGGCAGGAGACTGGGATAGTAAAGGGAAGGGAAAG
AGTAATTTGTCTAAAATTGTCTGGCTGAACCAGAGGAGCGGAGCTAGGAGCAGCCTGACCTGAG
GGTATGTAGGAAGTTGGAGAAGGCCAGGGGGAATGTGAACTCTGTTTGCTTTGGTTTCTCATAC
CTGCAAATGCTAAATTTGAGAAGAAGCCACACGGCGTGTTGGAAATTTGGTTAATTCTGGTTGG
TTTTCTTCATTCAAGAAAGCTCGTGATTCTTCACTGCAAAATGTTTGCATTAGAAATGGGGTCA
TGCTCTTTAAAGGGGGGAGAAGGACAGAGGCCCCATGTCAGCCCAGGGTTTTACTGGTGATCAG
TTCAAGTCATTGTTAACCATTATGTGAAATATATCTCCAGTGGAACTGAAAATTGGAAAAGGCT
GTAAATAAATCAATCAAATGATTTCTTTGTATAAACGAATTATACAATTAAAAAAAAGCACACA
CATAATAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006254206 ⟹ XP_006254268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	71,251,145 - 71,280,345 (+)	NCBI
mRatBN7.2	17	66,341,251 - 66,370,445 (+)	NCBI
Rnor_6.0	17	69,991,786 - 70,020,977 (+)	NCBI
Rnor_5.0	17	71,695,341 - 71,724,535 (+)	NCBI

Sequence:

show sequence

TCAAATCCCCGGATGATGGCCGCAGCCGCTCTCTGCTAGAAGGCAACTTGCTGCTTCGCAGAAG
CTGGCGGGCACCGTGCCCGCCACGATCGGTCTGCTGGGCACTGGGCCACCGCCCCACCCACCCC
CCTCTCCGGACATGGAGCCAGAGCCGGCGGCTCCTAAGCAACCCCGGCCGCGGAGGAGAAGCCG
CAGGGCCTCAGTGCTCAGCGAGGACCAAGCCGCGGGGCTTCCGGCCGACACACCCGGGCCGGCG
GCGAACGAGAGATGCTCCCTTCGGAGAGGCAGCTCCTTCACATTTCTAACCCCTGGCCCGCACT
GGGACTTCACTTTGAAAAGAAAACGACGAGAGAAAGATGATGATGTTGTAAGCCTTAGCAGCCT
TGATTTGAAGGAGCCAAGCAATAAAAGAGTTCGGCCCCTAGGTCGGGTCACATCCTTGGCAAAC
TTAATCTCTCCCGTAAGAAATGGAGCAGTCAGGCGCTTTGGTCAGACCATACAGTCCTTTACCC
TTCGTGGTGACCACAGATCTCCAGCCTCTACCCAGAAGTCATTCAGCAGGGCCACAGTCCCTAC
ACCCACCAAGAGAAGAAGCAGTGCACTATGGTCGGAGATGCTAGACATCAGTATGAAGGAGTCC
TTGACCACTCGAGAGATCAAACGACAGGAGGCAATATATGAATTGTCCCGAGGAGAACAGGACT
TAATCGAGGATCTCAAGCTCGCTAGAAAGGCCTACCATGACCCCATGTTAAAGCTGTCCATCAT
GTCAGAAGAGGAGCTCACACATATATTTGGAGACCTGGATGCTTACATCCCTCTACACGAAGAT
CTGTTAGCAAGAATAGGAGAAGCAACCAAGCCTGACGGGACCGTGGAACAGATCGGTCACATTC
TCGTGAATTGGTTACCAGGCCTGAACGCCTACAGAGGCTACTGTAGCAACCAGCTGGCGGCCAA
GGCTCTTCTGGATCAGAAGAAACAGGACCCACGAGTCCAAGACTTCCTCCAGCGCTGTCTGGAG
TCTCCCTTCAGTCGAAAGCTAGATCTTTGGAGTTTCCTAGATATTCCTCGAAGTCGCCTCGTCA
AGTACCCCTTGCTGTTAAAAGAAATCCTTAGACATACGCCCAAAGACCACCTCGATGTTCAGCT
TCTGGAGAAAGCAATTTTAATAATACAAGAAGTTCTTTCTGATATCAACTTGAAGAAAGGCGAA
TCCGAGTGTCAGTATTACATCGACAAACTGGAGTACCTGGATGAGAAGCAGAAGGACCCCAGGA
TCGAGGCGAGCAAGGTGCTGCTGTGTCATGGGGAGCTGAAGAATAAAAGTGGCCATAAACTGTA
CATTTTCTTATTTCAAGACATCTTGGTTTTGACTCGGCCTGTCACCCGAAATGAGCGCCACTCC
TACCAGGTTTACCGCCAGCCCATCCCAGTGCAGGAGCTGGTGCTGGAAGACCTGCAGGACGGGG
ATGTGCGCATGGGCGGCTCCTTCCGAGGGGCCTTTGGCAACTCAGACAAAGCTAAAAATATCTT
TAGAGTGCGCTTCCAGGACCCTTCTCCAGGCCAGTCCCACACACTGCAAGCCAACGATGTGTTC
CACAAGCAGCAGTGGTTCAACTGCATTCGCTCGGCCATCGCCCCTTTCCAGCGGGCCGCCAGCC
CCCTCGAGCTGCAGGGCTTGCCAGACCTGCACGAAGAGTGTGAGGAGAACAACCCTTCTGCTGG
GAATCTCAGAGCCCAGCGACGGTCATGCGTGCTTCCTGGTGTTATGCAGGTAGACCATGAAAGT
GTGCTGGAGTGTGGCTCGAGTGTACAGACCTCGGAGGACACCAGGAACGCAAAGGCACATCGGC
CTCAGCATGGCCTGCGAAGAGCAAGGGACAAGGCGCAGTTGGGTGGCAAAAAGAAAGAGACTTT
GGTATGAGTGTGTGTGTTCCCCGGTGGGAGCTGTTTATTTATAAATGTGTACAGTTTTCTTGTA
ACGGGAGCGTCGAGGGCTACTCTGTACCAGATGTAATATGTCCATGGATTGGGTCTCTCTCTCA
TCCTCTCCCTCTCCCTTCCTCCCCCCCCCCAACCCCCACGTCCTCGTCTGCGTTGTCGTCATTG
TCGTTGTTGTTAATGGCAGCTAAAGATACACAGGTTACTGTTAGAGTGAAGACTTTGAAGGGGT
GTTTTCATGGATGGTGGCTTTTATCAGAAGAAATGTGGCAGAACCAGTGTCGTCCATGCTGGTA
GACCGTGACTTTCCACCAAATGCCAGTGTTTGCCAAGCTTAAACCTTGCAAATGCTGAAGTTCC
GTCAGCGTTCTTTGTTAGAGCTCAGGTGGAGTGCGGAATTTTAATAATGACACCTGCAGTCTAC
ATGGGCGAGGTCTGAGTTTGAAATATTTCATATTTACAGGGAGCGCTGCTTCCTTGGAGAACAA
GCATAAAGCCTGTTGTCTTCCCCTTTTCTCAACTGGAACGAACGAACGAACACCGTGTCAGTCT
CACACGGTTCTCCTTCTCCATTCATTCATTCTGCCAACTATTTAATTTTTTTTTATTGTAAAGT
AGTTTTTAGTATTTGCTTTTATTTTTTTACGTTGATGCCTTTTTAAATTGGCATATCCTTGAAG
TTTTTCCTCCTGATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTC
ATATTAATTTTATCAAGTGAAACCAAGCCATATTGTTTGAGCCAATTAAGAAAACAGCAGTTTT
TACAGTGTATCATGTCAGGGTGATAAAGTCCCATGAAATGACTTAGTGTATTCTAGACTACTGA
AAGAAACCACAGGAAGGGTGGGTGGAAGTTTTTGTGTTGTCAGAAAAGCAAGAGAGAAGGCAGG
AGACTGGGATAGTAAAGGGAAGGGAAAGAGTAATTTGTCTAAAATTGTCTGGCTGAACCAGAGG
AGCGGAGCTAGGAGCAGCCTGACCTGAGGGTATGTAGGAAGTTGGAGAAGGCCAGGGGGAATGT
GAACTCTGTTTGCTTTGGTTTCTCATACCTGCAAATGCTAAATTTGAGAAGAAGCCACACGGCG
TGTTGGAAATTTGGTTAATTCTGGTTGGTTTTCTTCATTCAAGAAAGCTCGTGATTCTTCACTG
CAAAATGTTTGCATTAGAAATGGGGTCATGCTCTTTAAAGGGGGGAGAAGGACAGAGGCCCCAT
GTCAGCCCAGGGTTTTACTGGTGATCAGTTCAAGTCATTGTTAACCATTATGTGAAATATATCT
CCAGTGGAACTGAAAATTGGAAAAGGCTGTAAATAAATCAATCAAATGATTTCTTTGTATAAAC
GAATTATACAATTAAAAAAAAGCACACACATAATAACCCAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001034112	(Get FASTA)	NCBI Sequence Viewer
	NP_001427213	(Get FASTA)	NCBI Sequence Viewer
	XP_006254268	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI00155	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000023945
	ENSRNOP00000023945.2
	ENSRNOP00000092157.2
	ENSRNOP00000099697.1
	ENSRNOP00000102206
	ENSRNOP00000102206.1
	ENSRNOP00000107680.1
	ENSRNOP00000110663.1

RefSeq Acc Id:

NP_001034112 ⟸ NM_001039023

- UniProtKB:

Q498M6 (UniProtKB/TrEMBL), A6JLQ2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVAHDEIGGLLPIKRTIRVLDVNNQPFREQEEPSNKRVRPLGRVTSLANLISPVRNGAVRRFGQ
TIQSFTLRGDHRSPASTQKSFSRATVPTPTKRRSSALWSEMLDISMKESLTTREIKRQEAIYEL
SRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTHIFGDLDAYIPLHEDLLARIGEATKPDGTV
EQIGHILVNWLPGLNAYRGYCSNQLAAKALLDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDI
PRSRLVKYPLLLKEILRHTPKDHLDVQLLEKAILIIQEVLSDINLKKGESECQYYIDKLEYLDE
KQKDPRIEASKVLLCHGELKNKSGHKLYIFLFQDILVLTRPVTRNERHSYQVYRQPIPVQELVL
EDLQDGDVRMGGSFRGAFGNSDKAKNIFRVRFQDPSPGQSHTLQANDVFHKQQWFNCIRSAIAP
FQRAASPLELQGLPDLHEECEENNPSAGNLRAQRRSCVLPGVMQVDHESVLECGSSVQTSEDTR
NAKAHRPQHGLRRARDKAQLGGKKKETLV

hide sequence

RefSeq Acc Id:

XP_006254268 ⟸ XM_006254206

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEPEPAAPKQPRPRRRSRRASVLSEDQAAGLPADTPGPAANERCSLRRGSSFTFLTPGPHWDFT
LKRKRREKDDDVVSLSSLDLKEPSNKRVRPLGRVTSLANLISPVRNGAVRRFGQTIQSFTLRGD
HRSPASTQKSFSRATVPTPTKRRSSALWSEMLDISMKESLTTREIKRQEAIYELSRGEQDLIED
LKLARKAYHDPMLKLSIMSEEELTHIFGDLDAYIPLHEDLLARIGEATKPDGTVEQIGHILVNW
LPGLNAYRGYCSNQLAAKALLDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPL
LLKEILRHTPKDHLDVQLLEKAILIIQEVLSDINLKKGESECQYYIDKLEYLDEKQKDPRIEAS
KVLLCHGELKNKSGHKLYIFLFQDILVLTRPVTRNERHSYQVYRQPIPVQELVLEDLQDGDVRM
GGSFRGAFGNSDKAKNIFRVRFQDPSPGQSHTLQANDVFHKQQWFNCIRSAIAPFQRAASPLEL
QGLPDLHEECEENNPSAGNLRAQRRSCVLPGVMQVDHESVLECGSSVQTSEDTRNAKAHRPQHG
LRRARDKAQLGGKKKETLV

hide sequence

Ensembl Acc Id:

ENSRNOP00000023945 ⟸ ENSRNOT00000023945

Ensembl Acc Id:

ENSRNOP00000092157 ⟸ ENSRNOT00000094324

Ensembl Acc Id:

ENSRNOP00000102206 ⟸ ENSRNOT00000170244

Ensembl Acc Id:

ENSRNOP00000107680 ⟸ ENSRNOT00000148858

Ensembl Acc Id:

ENSRNOP00000099697 ⟸ ENSRNOT00000125687

Ensembl Acc Id:

ENSRNOP00000110663 ⟸ ENSRNOT00000166664

Protein Domains

DH PH

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q498M6-F1-model_v2	AlphaFold	Q498M6	1-541	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700550

Promoter ID:

EPDNEW_R11073

Type:

single initiation site

Name:

Net1_1

Description:

neuroepithelial cell transforming 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	70,010,785 - 70,010,845	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305034	AgrOrtholog
BioCyc Gene	G2FUF-8823	BioCyc
Ensembl Genes	ENSRNOG00000017765	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023945	ENTREZGENE
	ENSRNOT00000023945.6	UniProtKB/TrEMBL
	ENSRNOT00000094324.2	UniProtKB/TrEMBL
	ENSRNOT00000125687.1	UniProtKB/TrEMBL
	ENSRNOT00000148858.1	UniProtKB/TrEMBL
	ENSRNOT00000166664.1	UniProtKB/TrEMBL
	ENSRNOT00000170244	ENTREZGENE
	ENSRNOT00000170244.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.900.10	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7460511	IMAGE-MGC_LOAD
InterPro	DBL_dom_sf	UniProtKB/TrEMBL
	DH-domain	UniProtKB/TrEMBL
	Endocytic_GEF_Adapter	UniProtKB/TrEMBL
	GDS_CDC24_CS	UniProtKB/TrEMBL
	Net1_PH	UniProtKB/TrEMBL
	PH_type	UniProtKB/TrEMBL
	Pleckstrin_homology	UniProtKB/TrEMBL
	SOS1_NGEF_PH	UniProtKB/TrEMBL
KEGG Report	rno:307098	UniProtKB/TrEMBL
MGC_CLONE	MGC:114559	IMAGE-MGC_LOAD
NCBI Gene	307098	ENTREZGENE
PANTHER	NEUROEPITHELIAL CELL-TRANSFORMING GENE 1 PROTEIN	UniProtKB/TrEMBL
	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A	UniProtKB/TrEMBL
Pfam	RhoGEF	UniProtKB/TrEMBL
	SOS1_NGEF_PH	UniProtKB/TrEMBL
PhenoGen	Net1	PhenoGen
PROSITE	DH_1	UniProtKB/TrEMBL
	DH_2	UniProtKB/TrEMBL
	PH_DOMAIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017765	RatGTEx
SMART	RhoGEF	UniProtKB/TrEMBL
	SM00233	UniProtKB/TrEMBL
Superfamily-SCOP	DH-domain	UniProtKB/TrEMBL
	PH domain-like	UniProtKB/TrEMBL
UniProt	A0A8I6AVA8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0KXY5_RAT	UniProtKB/TrEMBL
	A0ABK0L1F0_RAT	UniProtKB/TrEMBL
	A0ABK0LRJ6_RAT	UniProtKB/TrEMBL
	A0ABK0M5A4_RAT	UniProtKB/TrEMBL
	A6JLQ2	ENTREZGENE, UniProtKB/TrEMBL
	Q498M6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-23	Net1	neuroepithelial cell transforming 1	Net1	neuroepithelial cell transforming gene 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Net1	neuroepithelial cell transforming gene 1	Net1_predicted	neuroepithelial cell transforming gene 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Net1_predicted	neuroepithelial cell transforming gene 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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