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Gene: Ppfia2 (PPFI scaffold protein A2) Rattus norvegicus

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Symbol:

Ppfia2

Name:

PPFI scaffold protein A2 (Ensembl:PTPRF interacting protein alpha 2)

RGD ID:

1305021

Description:

A structural constituent of postsynaptic density and structural constituent of presynapse. Involved in regulation of synaptic vesicle exocytosis. Is active in several cellular components, including postsynaptic density; presynaptic membrane; and synaptic vesicle. Orthologous to human PPFIA2 (PTPRF interacting protein alpha 2); INTERACTS WITH (+)-schisandrin B; bisphenol A; C60 fullerene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

liprin-alpha-2; LOC362876; PTPRF interacting protein alpha 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Allele / Splice:

Ppfia2^{Tn(sb-T2/Bart3)2.339Mcwi}

Genetic Models:

F344-Ppfia2^{Tn(sb-T2/Bart3)2.339Mcwi}

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	43,652,258 - 44,126,555 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	43,653,053 - 44,126,557 (+)	Ensembl				GRCr8
mRatBN7.2	7	41,765,716 - 42,240,104 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	41,765,575 - 42,239,599 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	43,671,707 - 44,144,439 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	45,874,782 - 46,347,515 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	45,652,995 - 46,125,395 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	48,548,932 - 49,045,852 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	48,867,664 - 49,042,455 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	48,658,858 - 49,058,116 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	7	48,563,521 - 48,568,045 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	45,140,154 - 45,616,620 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	38,644,350 - 39,116,317 (+)	NCBI		Celera
RGSC_v3.1	7	45,160,426 - 45,636,728 (+)	NCBI
Cytogenetic Map	7	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

cannabidiol (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

fenvalerate (EXP)

furan (EXP)

genistein (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

methoxychlor (EXP)

N-Nitrosopyrrolidine (ISO)

O-methyleugenol (ISO)

paracetamol (ISO)

pirinixic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

testosterone (EXP)

tetrachloromethane (EXP)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

dense core granule cytoskeletal transport (IEA,ISO)

maintenance of postsynaptic density structure (IEA)

presynapse organization (IEA)

regulation of dendritic spine development (IEA,ISO)

regulation of dendritic spine morphogenesis (IEA,ISO)

regulation of synaptic vesicle exocytosis (IDA,IMP)

synapse organization (IBA)

Cellular Component

axon (IEA)

cytoplasm (IEA)

dendritic spine (IEA,ISO)

glutamatergic synapse (EXP,IDA,IMP,ISO)

postsynaptic density (IDA,IMP)

postsynaptic specialization (IDA)

presynaptic active zone (IBA)

presynaptic cytosol (ISO)

presynaptic membrane (IDA)

synapse (ISO)

synaptic vesicle (IDA)

Molecular Function

protein binding (ISO)

protein-containing complex binding (ISO)

structural constituent of postsynaptic density (EXP,IDA,IMP)

structural constituent of presynapse (IDA,IMP)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation
6.	Liprin-a2 promotes the presynaptic recruitment and turnover of RIM1/CASK to facilitate synaptic transmission.	Spangler SA, etal., J Cell Biol. 2013 Jun 10;201(6):915-28. doi: 10.1083/jcb.201301011.
7.	Regulation of KIF1A-Driven Dense Core Vesicle Transport: Ca2+/CaM Controls DCV Binding and Liprin-α/TANC2 Recruits DCVs to Postsynaptic Sites.	Stucchi R, etal., Cell Rep. 2018 Jul 17;24(3):685-700. doi: 10.1016/j.celrep.2018.06.071.
8.	Interaction between GRIP and liprin-alpha/SYD2 is required for AMPA receptor targeting.	Wyszynski M, etal., Neuron 2002 Mar 28;34(1):39-52.

Additional References at PubMed

PMID:16186258	PMID:19056867	PMID:21618221	PMID:23791195	PMID:29439199

Genomics

Comparative Map Data

Ppfia2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	43,652,258 - 44,126,555 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	43,653,053 - 44,126,557 (+)	Ensembl				GRCr8
mRatBN7.2	7	41,765,716 - 42,240,104 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	41,765,575 - 42,239,599 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	43,671,707 - 44,144,439 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	45,874,782 - 46,347,515 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	45,652,995 - 46,125,395 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	48,548,932 - 49,045,852 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	48,867,664 - 49,042,455 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	48,658,858 - 49,058,116 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	7	48,563,521 - 48,568,045 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	45,140,154 - 45,616,620 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	38,644,350 - 39,116,317 (+)	NCBI		Celera
RGSC_v3.1	7	45,160,426 - 45,636,728 (+)	NCBI
Cytogenetic Map	7	q21	NCBI

PPFIA2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	81,257,975 - 81,759,350 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	81,257,975 - 81,759,553 (-)	Ensembl			hg38	GRCh38
GRCh37	12	81,651,754 - 82,153,129 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	80,177,487 - 80,677,240 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	80,155,823 - 80,655,577	NCBI
Celera	12	81,321,211 - 81,820,889 (-)	NCBI		Celera
Cytogenetic Map	12	q21.31	NCBI
HuRef	12	78,708,811 - 79,209,133 (-)	NCBI		HuRef
CHM1_1	12	81,618,521 - 82,119,470 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	81,236,956 - 81,738,412 (-)	NCBI		T2T-CHM13v2.0

Ppfia2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	106,305,129 - 106,769,329 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	106,306,200 - 106,771,813 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	106,469,500 - 106,933,468 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	106,470,339 - 106,935,952 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	105,907,395 - 106,369,574 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	105,874,449 - 106,336,628 (+)	NCBI		MGSCv36	mm8
Celera	10	108,413,090 - 108,874,050 (+)	NCBI		Celera
Cytogenetic Map	10	D1	NCBI
cM Map	10	55.39	NCBI

Ppfia2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	19,839,092 - 20,286,578 (-)	Ensembl
ChiLan1.0	NW_004955405	19,837,749 - 20,291,666 (-)	NCBI	ChiLan1.0	ChiLan1.0

PPFIA2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	89,297,594 - 89,800,504 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	89,293,993 - 89,796,899 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	78,768,756 - 79,271,630 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	81,879,812 - 82,381,524 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	81,879,812 - 82,376,917 (-)	Ensembl			panPan2	panpan1.1

PPFIA2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	23,481,370 - 23,950,412 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	23,482,549 - 23,951,141 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	23,904,766 - 24,373,671 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	23,842,759 - 24,321,109 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	23,842,772 - 24,320,345 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	23,428,189 - 23,897,907 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	23,479,044 - 23,947,917 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	23,719,822 - 24,188,937 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ppfia2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	36,381,131 - 36,821,732 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936698	2,094,374 - 2,531,465 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936698	2,090,768 - 2,531,366 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PPFIA2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	99,819,430 - 100,279,030 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	99,818,591 - 100,279,029 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	105,054,270 - 105,195,571 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PPFIA2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	76,740,204 - 77,237,990 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	76,736,719 - 77,079,140 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	168,176,151 - 168,685,075 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ppfia2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624837	629,302 - 1,111,081 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624837	627,484 - 1,116,597 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ppfia2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	184,736,158 - 185,196,181 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ppfia2
3235 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	111
Count of miRNA genes:	75
Interacting mature miRNAs:	103
Transcripts:	ENSRNOT00000005862
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354644	Spl4	Serum phospholipid level QTL 4	4.9		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	7	21541977	51639954	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	23807606	68807606	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	10517086	62346019	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	7216097	52216097	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1709527	46709527	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	26638057	71638057	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	24179478	86817926	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	10112916	60150541	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	39845902	84845902	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	9460877	54460877	Rat
1354637	Scl30	Serum cholesterol level QTL 30	3.7		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	7	21541977	51639954	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	32998702	77998702	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1669658	46669658	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	36178764	81178764	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	36178764	81178764	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
2303629	Vencon3	Ventilatory control QTL 3	7.25		respiration trait (VT:0001943)	respiration rate (CMO:0000289)	7	42996226	58678836	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	28624575	65788017	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	21541977	86817926	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	10498820	55498820	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	17460447	62460447	Rat
70207	Niddm31	Non-insulin dependent diabetes mellitus QTL 31	3.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	20057232	65057232	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	27182914	72182914	Rat

Markers in Region

BE106419

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	42,224,388 - 42,224,548 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	49,028,472 - 49,028,631	NCBI	Rnor6.0
Rnor_5.0	7	49,043,041 - 49,043,200	UniSTS	Rnor5.0
RGSC_v3.4	7	45,600,625 - 45,600,784	UniSTS	RGSC3.4
Celera	7	39,101,136 - 39,101,295	UniSTS
RH 3.4 Map	7	352.9	UniSTS
Cytogenetic Map	7	q21	UniSTS

BE120388

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	41,943,097 - 41,943,314 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	48,726,382 - 48,726,598	NCBI	Rnor6.0
Rnor_5.0	7	48,740,852 - 48,741,068	UniSTS	Rnor5.0
RGSC_v3.4	7	45,318,191 - 45,318,407	UniSTS	RGSC3.4
Celera	7	38,821,377 - 38,821,593	UniSTS
RH 3.4 Map	7	348.41	UniSTS
Cytogenetic Map	7	q21	UniSTS

RH138710

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	42,143,149 - 42,143,307 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	48,947,233 - 48,947,390	NCBI	Rnor6.0
Rnor_5.0	7	48,961,802 - 48,961,959	UniSTS	Rnor5.0
RGSC_v3.4	7	45,519,385 - 45,519,542	UniSTS	RGSC3.4
Celera	7	39,019,912 - 39,020,069	UniSTS
RH 3.4 Map	7	352.9	UniSTS
Cytogenetic Map	7	q21	UniSTS

AU048710

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	41,861,027 - 41,861,238 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	48,643,650 - 48,643,860	NCBI	Rnor6.0
Rnor_5.0	7	48,657,799 - 48,658,009	UniSTS	Rnor5.0
RGSC_v3.4	7	45,234,729 - 45,234,939	UniSTS	RGSC3.4
Celera	7	38,739,409 - 38,739,619	UniSTS
Cytogenetic Map	7	q21	UniSTS

AU049226

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	41,908,533 - 41,908,705 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	48,691,818 - 48,691,989	NCBI	Rnor6.0
Rnor_5.0	7	48,706,288 - 48,706,459	UniSTS	Rnor5.0
RGSC_v3.4	7	45,283,627 - 45,283,798	UniSTS	RGSC3.4
Celera	7	38,786,804 - 38,786,975	UniSTS
Cytogenetic Map	7	q21	UniSTS

Genetic Models

This gene Ppfia2 is modified in the following models/strains:

F344-Ppfia2^{Tn(sb-T2/Bart3)2.339Mcwi}

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
13	11	40	151	91	89	59	31	59	6	246	103	11	127	63	92	30	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005862 ⟹ ENSRNOP00000005862

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	43,949,992 - 44,121,945 (+)	Ensembl
mRatBN7.2 Ensembl	7	42,063,519 - 42,235,480 (+)	Ensembl
Rnor_6.0 Ensembl	7	48,867,664 - 49,042,455 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108079 ⟹ ENSRNOP00000094445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	43,653,230 - 44,126,557 (+)	Ensembl
mRatBN7.2 Ensembl	7	41,765,575 - 42,238,868 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119432 ⟹ ENSRNOP00000093332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	43,653,053 - 44,126,153 (+)	Ensembl
mRatBN7.2 Ensembl	7	41,765,575 - 42,239,599 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000139907 ⟹ ENSRNOP00000109305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	43,827,923 - 44,126,554 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000142386 ⟹ ENSRNOP00000104793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	43,827,926 - 44,126,557 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000174016 ⟹ ENSRNOP00000110837

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	43,827,926 - 44,126,557 (+)	Ensembl

RefSeq Acc Id:

NM_001108745 ⟹ NP_001102215

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,653,055 - 44,126,063 (+)	NCBI
mRatBN7.2	7	41,766,575 - 42,239,599 (+)	NCBI
Rnor_6.0	7	48,549,456 - 49,045,360 (+)	NCBI
Rnor_5.0	7	48,563,521 - 48,568,045 (+)	NCBI
Rnor_5.0	7	48,658,858 - 49,058,116 (+)	NCBI
RGSC_v3.4	7	45,140,154 - 45,616,620 (+)	RGD
Celera	7	38,644,350 - 39,116,317 (+)	RGD

Sequence:

show sequence

CATTTTTCCGATGGACCTTTCTCCTTTTGGCTGCTGACGGAGCCACGGGAAGATGCCGAACTGC
TGCCACGTTAAGGAGCCAGGGCACGTTCCAAGAGAACGCAGGGGCTCGCCAGTGTCTAAGCTGC
CTTTCTCCTCCCGTTGCTAGGGAAATGGTCCAGGACTGCTGGGTGTGAGCCTCACCTCTCCTCC
AGCCGAGAGACTGCGGTTGTCATTGACAATTGAAGAAACAGGACCTGAGATAAGAGACCTTAGC
AATGATGTGCGAAGTGATGCCCACGATTAATGAGGACACCCCAATGAGCCAACGGGGGTCCCAA
AGTAGTGGCTCTGACTCGGACTCCCACTTTGAGCAACTGATGGTCAATATGCTAGATGAAAGGG
ACCGTTTACTGGACACACTTCGAGAGACTCAGGAAAGCCTCTCGCTTGCCCAGCAAAGACTCCA
GGATGTCATCTACGACCGAGATTCACTCCAGAGACAGCTTAATTCAGCCCTGCCTCAGGACATC
GAATCTCTAACAGGAGGGCTGACTGGTTCTAAGGGGGCTGATCCACCGGAGTTTGCTGCACTGA
CTAAAGAGCTGAATGCTTGCCGTGAGCAACTTCTAGAAAAGGAAGAAGAGATTTCAGAGCTAAA
AGCTGAAAGAAACAACACAAGACTGTTGCTGGAACACTTGGAGTGCCTTGTGTCCCGACATGAA
AGGTCACTAAGAATGACAGTGGTCAAGCGGCAAGCACAGTCTCCCTCTGGAGTGTCCAGTGAAG
TGGAGGTTCTCAAGGCACTGAAATCTTTGTTTGAGCACCACAAAGCCTTGGATGAAAAGGTAAG
GGAGCGACTGAGGGTTTCTTTAGAAAGAGTCTCTGCACTGGAAGAGGAACTAGCTGCAGCTAAT
CAGGAGATTGTTGCCTTGCGTGAGCAAAATGTTCATATTCAAAGAAAAATGGTATCGAGTGAGG
GGTCCACGGAGTCAGAACATCTTGACGGGATGGAACCAGGCCAGAAAGTCCATGAAAAGCGTCT
ATCCAATGGCTCCATAGATTCCACAGATGACACCAGCCAGATCGTCGAGCTGCAAGAATTGCTT
GAAAAGCAAAACTATGAAATGGCCCAAATGAAAGACCGCTTAGCAGCTCTTTCTTCCCGAGTGG
GAGAAGTGGAACAAGAAGCCGAGACGGCAAGAAAGGACCTCATTAAAACAGAAGAAATGAACAC
CAAATATCAAAGGGACATCCGAGAGGCCATGGCTCAGAAGGAAGATATGGAAGAAAGAATCACA
ACTCTGGAGAAGCGTTACCTGAGTGCCCAGAGAGAATCTACCTCCATTCACGACATGAATGATA
AACTAGAAAATGAGTTGGCAAACAAGGAAGCCATCTTGCGGCAGATGGAAGAGAAAAACAGGCA
ATTGCAAGAGCGTCTTGAGCTGGCTGAGCAAAAGTTACAGCAGACCATGAGGAAAGCTGAAACT
TTACCTGAAGTAGAGGCAGAACTTGCTCAGAGAATTGCAGCCCTAACAAAGGCTGAAGAGAGAC
ATGGAAATATTGAAGAGCGTATGAGACACCTAGAGGGTCAACTTGAAGAGAAGAATCAAGAACT
TCAAAGAGCTAGGCAAAGGGAGAAAATGAATGAAGAGCATAACAAGAGATTATCTGACACCGTG
GACAGGCTTCTGACAGAATCCAATGAGCGCCTGCAGCTGCACCTAAAGGAAAGGATGGCTGCCT
TGGAAGAGAAGAATGTTTTGATTCAAGAATCAGAAACCTTCAGAAAAAATCTTGAAGAGTCCTT
ACATGATAAGGAAAGACTAGCAGAAGAAATAGAGAAGTTGAGGTCTGAACTTGACCAAATGAAA
ATGAGAACTGGCTCTCTAATTGAACCAACTATATCGAGAACTCATCTAGACACCTCCGCTGAGT
TGCGGTATTCAGTTGGGTCCCTCGTAGACAGCCAGTCTGATTACAGAACCACTAAAGTAATACG
AAGACCAAGGAGAGGCCGCATGGGTGTGCGAAGAGATGAGCCAAAGGTGAAATCCCTTGGGGAT
CATGAATGGAACAGGACTCAGCAAATTGGAGTACTAGGCAGTCACCCATTCGAAAGTGACACTG
AAATGTCAGATATTGATGATGACGACAGAGAAACGATTTTCAGCTCAATGGATCTTCTCTCTCC
AAGTGGCCATTCTGATGCCCAGACGCTAGCTATGATGCTTCAAGAACAACTGGATGCAATCAAC
AAAGAAATAAGGCTAATCCAGGAAGAAAAGGAATCTACAGAATTGCGTGCTGAAGAAATCGAGA
ATAGGGTGGCTAGTGTAAGCTTGGAAGGTCTGAACTTGGCAAGGGTCCATCCTGGTACCTCCAT
CACTGCTTCTGTTACAGCTTCATCACTGGCCAGTTCATCTCCCCCAAGTGGACACTCAACGCCA
AAGCTTACACCAAGAAGCCCGGCCAGGGAAATGGACCGTATGGGAGTCATGACCCTGCCAAGTG
ATCTAAGGAAACATCGGAGAAAGATTGCAGTGGTGGAAGAAGATGGGCGGGAAGATAAAGCAAC
AATTAAATGTGAAACTTCTCCTCCCCCAACACCCAGAGCCATCAGAATGACTCACACCCTACCT
TCTTCCTACCACAATGAGGCCCGGAGCAGTTTATCTGCCTCTCTTGAGCCAGATAGACTTGGGC
TTGGCAGTGCCAATAGCAGCCAGGACTCTCTTCACAAAGCCCCGAAGAAGAAAGGAATCAAGTC
TTCAATTGGGCGTTTGTTTGGTAAAAAAGAGAAGGCTCGACTTGGGCAGCTTCGAGGCTTCATG
GAGACAGAAGCTGCAGCACAGGAATCGCTGGGCTTAGGCAAACTTGGCACTCAAGCTGAAAAGG
ACAGAAGGCTGAAGAAAAAGCATGAACTTCTTGAAGAAGCTCGTAGAAAAGGATTACCCTTTGC
CCAGTGGGACGGACCTACTGTGGTTGCGTGGCTGGAGCTCTGGCTGGGAATGCCTGCTTGGTAT
GTGGCAGCATGCAGAGCCAACGTGAAAAGTGGTGCCATCATGTCGGCTTTATCAGACACTGAAA
TCCAAAGGGAGATTGGAATCAGCAACCCTCTGCACCGCTTAAAGCTCAGACTAGCCATCCAGGA
GATGGTTTCCCTCACAAGCCCTTCAGCTCCTCCGACATCGCGAACTCCTTCAGGCAATGTCTGG
GTGACCCATGAAGAAATGGAAAACCTCGCAGCTCCAGCAAAAACGAAAGAATCTGAGGAAGGAA
GCTGGGCCCAGACCCTGGCTTATGGAGATATGAACCATGAGTGGATCGGGAACGAATGGCTTCC
CAGCCTCGGATTACCGCAATACCGAAGTTACTTTATGGAATGCTTGGTTGATGCAAGAATGTTA
GATCACCTCACAAAAAAGGATCTTCGTGTCCATTTAAAAATGGTGGATAGTTTCCATCGAACAA
GTTTACAGTATGGGATTATGTGCTTGAAAAGATTGAATTATGATAGGAAAGAGCTAGAGAGAAG
ACGAGAAGCAAGTCAACATGAAATAAAAGATGTTTTAGTGTGGAGCAATGATCGAGTTATTCGC
TGGATCCAAGCGATTGGACTTCGGGAATATGCCAATAACATTCTTGAGAGTGGAGTGCATGGCT
CACTCATAGCCCTGGATGAGAACTTTGACTACAGCAGCCTAGCTCTACTGCTGCAGATTCCCAC
GCAGAACACCCAGGCAAGGCAGATTCTTGAACGCGAGTATAATAACCTCTTGGCTCTGGGAACT
GAGCGGCGACTGGATGAAAGTGATGACAAGAATTTCAGACGCGGATCAACCTGGCGAAGGCAGT
TCCCTCCTCGCGAGGTACACGGAATCAGCATGATGCCTGGATCCTCAGAAACATTACCAGCTGG
ATTCAGGTTGACCACAACATCTGGGCAGTCCAGAAAAATGACGACAGATGTTGCTTCATCAAGA
CTGCAGAGGTTAGACAACTCCACTGTTCGCACATACTCATGTTGACAAGTCACTCAAAGGAGGC
AGCACTGACCTGCTATGTCGTCTTTTCTGTCTACACGACCTAAAGTGCACTACTGCCTAAGAAG
ACAAATGGAGAAGTCTTTGTGAAGACTGAACTCTAAAGGAATAATATAAGTAACGATTTACCAA
ACGTTAAATATGTGACTCTGGGGGGAGTTGGGTCTTGGGTTTGATTAGTTTACTATGATTGTAA
TAAAATGTTTAAGTCATCTGATGTAAGAGCATCATCCACGTCATAAATTCTGAACATCTGATGC
TTTTATGAGATGGAACCACTCGTTTTTTTCATGTTGTAATATAATAGGCATTTATGTATTACTG
TGTATCATTTCTTTTTAAAGGTGTAAGTCTTCTGTAAATGGATATAAATATGATTTTTTTAAAA
AAATAAAATATATGGTTCATGGAGTCTCGAGTGCAAACATTGAACAATTCCAAGTACTGTTTGT
ATTTTACCATTTCACCATTTATACGGTTTTTGAACTGTAACAGTCAATCAATATGTTTCTTAGA
AGTGTGTTTCATGCTTCGACATGCTTCTCCTTCAAGTCTGTCATACTTTAAAGCTGAACACCTG
CCTCTGATCATGTGATTTAACCTGGAGCCCAAAATGACCTTTAAAGGCAATCAGGGATGTGATA
CCCTCTCTCTCTCTCTCTCTTTACAAATGCACTGTGATGGCTCAATCTGTTTTAAAAGAAAACA
AAGCCAAACTGTTTACAAGAGTCAAATGCAATGATTTTAAAAATTTATATTAAGAAAACCATTA
CCTAATCGTGTTGCCTGTGGACCAAGAAACACACACACACACACACACACACACACACACACAC
ACACACACACACATTTTATTAAGAACTACACGTTCATAGAAACACCCTGAACTTCCAGCCAGCA
CTGGACAGTGAATGTCAATCATTGTAGAGTCTGAGGTCCATTTCCACTAGGGGTGGGG

hide sequence

RefSeq Acc Id:

XM_017594921 ⟹ XP_017450410

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,653,169 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,770,850 - 42,240,104 (+)	NCBI
Rnor_6.0	7	48,549,462 - 49,045,852 (+)	NCBI

Sequence:

show sequence

TCCGATGGACCTTTCTCCTTTTGGCTGCTGACGGAGCCACGGGAAGATGCCGAACTGCTGCCAC
GTTAAGGAGCCAGGGCACGTTCCAAGAGAACGCAGGGGCTCGCCAGTGTCTAAGCTGCCTTTCT
CCTCCCGTTGCTAGGGAAATGGTCCAGGACTGCTGGGTGTGAGCCTCACCTCTCCTCCAGCCGA
GAGACTGCGGTTGTCATTGACAATTGAAGAAACAGGACCTGAGATAAGAGACCTTAGCAATGAT
GTGCGAAGTGATGCCCACGATTAATGAGGACACCCCAATGAGCCAACGGGGGTCCCAAAGTAGT
GGCTCTGACTCGGACTCCCACTTTGAGCAACTGATGGTCAATATGCTAGATGAAAGGGACCGTT
TACTGGACACACTTCGAGAGACTCAGGAAAGCCTCTCGCTTGCCCAGCAAAGACTCCAGGATGT
CATCTACGACCGAGATTCACTCCAGAGACAGCTTAATTCAGCCCTGCCTCAGGACATCGAATCT
CTAACAGGAGGGCTGACTGGTTCTAAGGGGGCTGATCCACCGGAGTTTGCTGCACTGACTAAAG
AGCTGAATGCTTGCCGTGAGCAACTTCTAGAAAAGGAAGAAGAGATTTCAGAGCTAAAAGCTGA
AAGAAACAACACAAGACTGTTGCTGGAACACTTGGAGTGCCTTGTGTCCCGACATGAAAGGTCA
CTAAGAATGACAGTGGTCAAGCGGCAAGCACAGTCTCCCTCTGGAGTGTCCAGTGAAGTGGAGG
TTCTCAAGGCACTGAAATCTTTGTTTGAGCACCACAAAGCCTTGGATGAAAAGGTAAGGGAGCG
ACTGAGGGTTTCTTTAGAAAGAGTCTCTGCACTGGAAGAGGAACTAGCTGCAGCTAATCAGGAG
ATTGTTGCCTTGCGTGAGCAAAATGTTCATATTCAAAGAAAAATGGTATCGAGTGAGGGGTCCA
CGGAGTCAGAACATCTTGACGGGATGGAACCAGGCCAGAAAGTCCATGAAAAGCGTCTATCCAA
TGGCTCCATAGATTCCACAGATGACACCAGCCAGATCGTCGAGCTGCAAGAATTGCTTGAAAAG
CAAAACTATGAAATGGCCCAAATGAAAGACCGCTTAGCAGCTCTTTCTTCCCGAGTGGGAGAAG
TGGAACAAGAAGCCGAGACGGCAAGAAAGGACCTCATTAAAACAGAAGAAATGAACACCAAATA
TCAAAGGGACATCCGAGAGGCCATGGCTCAGAAGGAAGATATGGAAGAAAGAATCACAACTCTG
GAGAAGCGTTACCTGAGTGCCCAGAGAGAATCTACCTCCATTCACGACATGAATGATAAACTAG
AAAATGAGTTGGCAAACAAGGAAGCCATCTTGCGGCAGATGGAAGAGAAAAACAGGCAATTGCA
AGAGCGTCTTGAGCTGGCTGAGCAAAAGTTACAGCAGACCATGAGGAAAGCTGAAACTTTACCT
GAAGTAGAGGCAGAACTTGCTCAGAGAATTGCAGCCCTAACAAAGGCTGAAGAGAGACATGGAA
ATATTGAAGAGCGTATGAGACACCTAGAGGGTCAACTTGAAGAGAAGAATCAAGAACTTCAAAG
AGCTAGGCAAAGGGAGAAAATGAATGAAGAGCATAACAAGAGATTATCTGACACCGTGGACAGG
CTTCTGACAGAATCCAATGAGCGCCTGCAGCTGCACCTAAAGGAAAGGATGGCTGCCTTGGAAG
AGAAGAATGTTTTGATTCAAGAATCAGAAACCTTCAGAAAAAATCTTGAAGAGTCCTTACATGA
TAAGGAAAGACTAGCAGAAGAAATAGAGAAGTTGAGGTCTGAACTTGACCAAATGAAAATGAGA
ACTGGCTCTCTAATTGAACCAACTATATCGAGAACTCATCTAGACACCTCCGCTGAGTTGCGGT
ATTCAGTTGGGTCCCTCGTAGACAGCCAGTCTGATTACAGAACCACTAAAGTAATACGAAGACC
AAGGAGAGGCCGCATGGGTGTGCGAAGAGATGAGCCAAAGGTGAAATCCCTTGGGGATCATGAA
TGGAACAGGACTCAGCAAATTGGAGTACTAGGCAGTCACCCATTCGAAAGTGACACTGAAATGT
CAGATATTGATGATGACGACAGAGAAACGATTTTCAGCTCAATGGATCTTCTCTCTCCAAGTGG
CCATTCTGATGCCCAGACGCTAGCTATGATGCTTCAAGAACAACTGGATGCAATCAACAAAGAA
ATAAGGCTAATCCAGGAAGAAAAGGAATCTACAGAATTGCGTGCTGAAGAAATCGAGAATAGGG
TGGCTAGTGTAAGCTTGGAAGGTCTGAACTTGGCAAGGGTCCATCCTGGTACCTCCATCACTGC
TTCTGTTACAGCTTCATCACTGGCCAGTTCATCTCCCCCAAGTGGACACTCAACGCCAAAGCTT
ACACCAAGAAGCCCGGCCAGGGAAATGGACCGTATGGGAGTCATGACCCTGCCAAGTGATCTAA
GGAAACATCGGAGAAAGATTGCAGTGGTGGAAGAAGATGGGCGGGAAGATAAAGCAACAATTAA
ATGTGAAACTTCTCCTCCCCCAACACCCAGAGCCATCAGAATGACTCACACCCTACCTTCTTCC
TACCACAATGAGGCCCGGAGTTTATCTGCCTCTCTTGAGCCAGATAGACTTGGGCTTGGCAGTG
CCAATAGCAGCCAGGACTCTCTTCACAAAGCCCCGAAGAAGAAAGGAATCAAGTCTTCAATTGG
GCGTTTGTTTGGTAAAAAAGAGAAGGCTCGACTTGGGCAGCTTCGAGGCTTCATGGAGACAGAA
GCTGCAGCACAGGAATCGCTGGGCTTAGGCAAACTTGGCACTCAAGCTGAAAAGGACAGAAGGC
TGAAGAAAAAGCATGAACTTCTTGAAGAAGCTCGTAGAAAAGGATTACCCTTTGCCCAGTGGGA
CGGACCTACTGTGGTTGCGTGGCTGGAGCTCTGGCTGGGAATGCCTGCTTGGTATGTGGCAGCA
TGCAGAGCCAACGTGAAAAGTGGTGCCATCATGTCGGCTTTATCAGACACTGAAATCCAAAGGG
AGATTGGAATCAGCAACCCTCTGCACCGCTTAAAGCTCAGACTAGCCATCCAGGAGATGGTTTC
CCTCACAAGCCCTTCAGCTCCTCCGACATCGCGAACTCCTTCAGGCAATGTCTGGGTGACCCAT
GAAGAAATGGAAAACCTCGCAGCTCCAGCAAAAACGAAAGAATCTGAGGAAGGAAGCTGGGCCC
AGTGTCCGGTTTTTCTACAGACCCTGGCTTATGGAGATATGAACCATGAGTGGATCGGGAACGA
ATGGCTTCCCAGCCTCGGATTACCGCAATACCGAAGTTACTTTATGGAATGCTTGGTTGATGCA
AGAATGTTAGATCACCTCACAAAAAAGGATCTTCGTGTCCATTTAAAAATGGTGGATAGTTTCC
ATCGAACAAGTTTACAGTATGGGATTATGTGCTTGAAAAGATTGAATTATGATAGGAAAGAGCT
AGAGAGAAGACGAGAAGCAAGTCAACATGAAATAAAAGATGTTTTAGTGTGGAGCAATGATCGA
GTTATTCGCTGGATCCAAGCGATTGGACTTCGGGAATATGCCAATAACATTCTTGAGAGTGGAG
TGCATGGCTCACTCATAGCCCTGGATGAGAACTTTGACTACAGCAGCCTAGCTCTACTGCTGCA
GATTCCCACGCAGAACACCCAGGCAAGGCAGATTCTTGAACGCGAGTATAATAACCTCTTGGCT
CTGGGAACTGAGCGGCGACTGGATGAAAGTGATGACAAGAATTTCAGACGCGGATCAACCTGGC
GAAGGCAGTTCCCTCCTCGCGAGGTACACGGAATCAGCATGATGCCTGGATCCTCAGAAACATT
ACCAGCTGGATTCAGGTTGACCACAACATCTGGGCAGTCCAGAAAAATGACGACAGATGTTGCT
TCATCAAGACTGCAGAGGTTAGACAACTCCACTGTTCGCACATACTCATGTTGACAAGTCACTC
AAAGGAGGCAGCACTGACCTGCTATGTCGTCTTTTCTGTCTACACGACCTAAAGTGCACTACTG
CCTAAGAAGACAAATGGAGAAGTCTTTGTGAAGACTGAACTCTAAAGGAATAATATAAGTAACG
ATTTACCAAACGTTAAATATGTGACTCTGGGGGGAGTTGGGTCTTGGGTTTGATTAGTTTACTA
TGATTGTAATAAAATGTTTAAGTCATCTGATGTAAGAGCATCATCCACGTCATAAATTCTGAAC
ATCTGATGCTTTTATGAGATGGAACCACTCGTTTTTTTCATGTTGTAATATAATAGGCATTTAT
GTATTACTGTGTATCATTTCTTTTTAAAGGTGTAAGTCTTCTGTAAATGGATATAAATATGATT
TTTTTAAAAAAATAAAATATATGGTTCATGGAGTCTCGAGTGCAAACATTGAACAATTCCAAGT
ACTGTTTGTATTTTACCATTTCACCATTTATACGGTTTTTGAACTGTAACAGTCAATCAATATG
TTTCTTAGAAGTGTGTTTCATGCTTCGACATGCTTCTCCTTCAAGTCTGTCATACTTTAAAGCT
GAACACCTGCCTCTGATCATGTGATTTAACCTGGAGCCCAAAATGACCTTTAAAGGCAATCAGG
GATGTGATACCCTCTCTCTCTCTCTCTCTTTACAAATGCACTGTGATGGCTCAATCTGTTTTAA
AAGAAAACAAAGCCAAACTGTTTACAAGAGTCAAATGCAATGATTTTAAAAATTTATATTAAGA
AAACCATTACCTAATCGTGTTGCCTGTGGACCAAGAAACACACACACACACACACACACACACA
CACACACACACACACACACACATTTTATTAAGAACTACACGTTCATAGAAACACCCTGAACTTC
CAGCCAGCACTGGACAGTGAATGTCAATCATTGTAGAGTCTGAGGTCCATTTCCACTAGGGGTG
GGGTGGAGGGGCAGAACCCCATAACCCACCCCTTTTTAAAATCACTGTTAACAGGGCATTAGCC
AGACTCAAGTCTGATATCACAAGCCTTTAGCTGAACTAACCATTTTTTGTGACTTCCCTGAATT
CCCTTTCATCAGAGGAAATAAAGACAGAATGGATTAACATTAACATATATAGTGTATAAAAACG
TAAAGATGAGTAATCTTTTTCTTGTGGCTTTTTTTGGTGGTGTCACTGTTGTTTATTCTTTATT
GATATGGGAGATTTCAAAGTGAAACCTATTTAATAATACCATTGACTAACTGCTGTTTTCCTGC
TGCTTGGTCTTATTAAATGCAAGACCTGTCATTAGTAAATTATATTTTTTTTGTATTTTAATTC
GTTATATTTGCACGTACATTTGTTTCAATGTCTATTTTTGTTGAACAGATTCAATCAAAAGGTA
ATGGTAACAGAAACCCTCTCCATTGTCAATAAAAAAAAATGCTTCCA

hide sequence

RefSeq Acc Id:

XM_039079446 ⟹ XP_038935374

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,653,169 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,766,690 - 42,240,093 (+)	NCBI

RefSeq Acc Id:

XM_039079448 ⟹ XP_038935376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,653,169 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,766,690 - 42,240,093 (+)	NCBI

RefSeq Acc Id:

XM_039079457 ⟹ XP_038935385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,653,169 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,770,850 - 42,238,688 (+)	NCBI

RefSeq Acc Id:

XM_039079459 ⟹ XP_038935387

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,653,169 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,770,850 - 42,238,688 (+)	NCBI

RefSeq Acc Id:

XM_039079461 ⟹ XP_038935389

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,827,878 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,240,104 (+)	NCBI

RefSeq Acc Id:

XM_039079462 ⟹ XP_038935390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,827,878 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,240,104 (+)	NCBI

RefSeq Acc Id:

XM_039079463 ⟹ XP_038935391

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,827,878 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,240,104 (+)	NCBI

RefSeq Acc Id:

XM_039079464 ⟹ XP_038935392

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,623 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,240,104 (+)	NCBI

RefSeq Acc Id:

XM_039079465 ⟹ XP_038935393

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,623 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,240,104 (+)	NCBI

RefSeq Acc Id:

XM_039079466 ⟹ XP_038935394

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,827,878 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,240,104 (+)	NCBI

RefSeq Acc Id:

XM_039079467 ⟹ XP_038935395

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,624 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,240,104 (+)	NCBI

RefSeq Acc Id:

XM_039079468 ⟹ XP_038935396

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,624 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,240,104 (+)	NCBI

RefSeq Acc Id:

XM_039079469 ⟹ XP_038935397

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,827,878 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,240,104 (+)	NCBI

RefSeq Acc Id:

XM_039079470 ⟹ XP_038935398

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,622 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,240,104 (+)	NCBI

RefSeq Acc Id:

XM_039079471 ⟹ XP_038935399

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,827,878 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,238,688 (+)	NCBI

RefSeq Acc Id:

XM_039079472 ⟹ XP_038935400

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,622 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,240,104 (+)	NCBI

RefSeq Acc Id:

XM_039079473 ⟹ XP_038935401

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,623 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,240,104 (+)	NCBI

RefSeq Acc Id:

XM_039079474 ⟹ XP_038935402

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,827,878 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,238,688 (+)	NCBI

RefSeq Acc Id:

XM_039079475 ⟹ XP_038935403

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,621 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,238,688 (+)	NCBI

RefSeq Acc Id:

XM_039079476 ⟹ XP_038935404

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,623 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,240,104 (+)	NCBI

RefSeq Acc Id:

XM_039079477 ⟹ XP_038935405

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,621 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,238,688 (+)	NCBI

RefSeq Acc Id:

XM_039079478 ⟹ XP_038935406

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,622 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,238,688 (+)	NCBI

RefSeq Acc Id:

XM_039079479 ⟹ XP_038935407

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,622 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,238,688 (+)	NCBI

RefSeq Acc Id:

XM_039079480 ⟹ XP_038935408

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,620 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,238,688 (+)	NCBI

RefSeq Acc Id:

XM_039079481 ⟹ XP_038935409

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,621 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,238,688 (+)	NCBI

RefSeq Acc Id:

XM_039079482 ⟹ XP_038935410

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,621 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,238,688 (+)	NCBI

RefSeq Acc Id:

XM_039079483 ⟹ XP_038935411

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,827,878 - 44,126,555 (+)	NCBI
mRatBN7.2	7	41,941,790 - 42,240,104 (+)	NCBI

RefSeq Acc Id:

XM_063263774 ⟹ XP_063119844

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,652,258 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263775 ⟹ XP_063119845

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,652,359 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263777 ⟹ XP_063119847

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,653,169 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263778 ⟹ XP_063119848

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,652,259 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263779 ⟹ XP_063119849

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,652,359 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263780 ⟹ XP_063119850

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,653,169 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263781 ⟹ XP_063119851

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,653,169 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263782 ⟹ XP_063119852

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,653,169 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263783 ⟹ XP_063119853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,653,169 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263784 ⟹ XP_063119854

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,653,169 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263785 ⟹ XP_063119855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,653,169 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263786 ⟹ XP_063119856

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,652,359 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263787 ⟹ XP_063119857

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,653,169 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263788 ⟹ XP_063119858

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,653,169 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263789 ⟹ XP_063119859

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,621 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263790 ⟹ XP_063119860

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,652,922 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263791 ⟹ XP_063119861

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,827,878 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263793 ⟹ XP_063119863

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,826,623 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263794 ⟹ XP_063119864

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,827,878 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263795 ⟹ XP_063119865

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,827,904 - 44,126,555 (+)	NCBI

RefSeq Acc Id:

XM_063263796 ⟹ XP_063119866

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	43,827,921 - 44,126,555 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102215	(Get FASTA)	NCBI Sequence Viewer
	NP_001426719	(Get FASTA)	NCBI Sequence Viewer
	NP_001426720	(Get FASTA)	NCBI Sequence Viewer
	XP_017450410	(Get FASTA)	NCBI Sequence Viewer
	XP_038935374	(Get FASTA)	NCBI Sequence Viewer
	XP_038935376	(Get FASTA)	NCBI Sequence Viewer
	XP_038935385	(Get FASTA)	NCBI Sequence Viewer
	XP_038935387	(Get FASTA)	NCBI Sequence Viewer
	XP_038935389	(Get FASTA)	NCBI Sequence Viewer
	XP_038935390	(Get FASTA)	NCBI Sequence Viewer
	XP_038935391	(Get FASTA)	NCBI Sequence Viewer
	XP_038935392	(Get FASTA)	NCBI Sequence Viewer
	XP_038935393	(Get FASTA)	NCBI Sequence Viewer
	XP_038935394	(Get FASTA)	NCBI Sequence Viewer
	XP_038935395	(Get FASTA)	NCBI Sequence Viewer
	XP_038935396	(Get FASTA)	NCBI Sequence Viewer
	XP_038935397	(Get FASTA)	NCBI Sequence Viewer
	XP_038935398	(Get FASTA)	NCBI Sequence Viewer
	XP_038935399	(Get FASTA)	NCBI Sequence Viewer
	XP_038935400	(Get FASTA)	NCBI Sequence Viewer
	XP_038935401	(Get FASTA)	NCBI Sequence Viewer
	XP_038935402	(Get FASTA)	NCBI Sequence Viewer
	XP_038935403	(Get FASTA)	NCBI Sequence Viewer
	XP_038935404	(Get FASTA)	NCBI Sequence Viewer
	XP_038935405	(Get FASTA)	NCBI Sequence Viewer
	XP_038935406	(Get FASTA)	NCBI Sequence Viewer
	XP_038935407	(Get FASTA)	NCBI Sequence Viewer
	XP_038935408	(Get FASTA)	NCBI Sequence Viewer
	XP_038935409	(Get FASTA)	NCBI Sequence Viewer
	XP_038935410	(Get FASTA)	NCBI Sequence Viewer
	XP_038935411	(Get FASTA)	NCBI Sequence Viewer
	XP_063119844	(Get FASTA)	NCBI Sequence Viewer
	XP_063119845	(Get FASTA)	NCBI Sequence Viewer
	XP_063119847	(Get FASTA)	NCBI Sequence Viewer
	XP_063119848	(Get FASTA)	NCBI Sequence Viewer
	XP_063119849	(Get FASTA)	NCBI Sequence Viewer
	XP_063119850	(Get FASTA)	NCBI Sequence Viewer
	XP_063119851	(Get FASTA)	NCBI Sequence Viewer
	XP_063119852	(Get FASTA)	NCBI Sequence Viewer
	XP_063119853	(Get FASTA)	NCBI Sequence Viewer
	XP_063119854	(Get FASTA)	NCBI Sequence Viewer
	XP_063119855	(Get FASTA)	NCBI Sequence Viewer
	XP_063119856	(Get FASTA)	NCBI Sequence Viewer
	XP_063119857	(Get FASTA)	NCBI Sequence Viewer
	XP_063119858	(Get FASTA)	NCBI Sequence Viewer
	XP_063119859	(Get FASTA)	NCBI Sequence Viewer
	XP_063119860	(Get FASTA)	NCBI Sequence Viewer
	XP_063119861	(Get FASTA)	NCBI Sequence Viewer
	XP_063119863	(Get FASTA)	NCBI Sequence Viewer
	XP_063119864	(Get FASTA)	NCBI Sequence Viewer
	XP_063119865	(Get FASTA)	NCBI Sequence Viewer
	XP_063119866	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM16778	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005862
	ENSRNOP00000005862.6
	ENSRNOP00000093332
	ENSRNOP00000093332.2
	ENSRNOP00000094445
	ENSRNOP00000094445.2
	ENSRNOP00000104793
	ENSRNOP00000104793.1
	ENSRNOP00000109305
	ENSRNOP00000109305.1
	ENSRNOP00000110837
	ENSRNOP00000110837.1

RefSeq Acc Id:

NP_001102215 ⟸ NM_001108745

- UniProtKB:

A6IGB9 (UniProtKB/TrEMBL), F1M8A4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMCEVMPTINEDTPMSQRGSQSSGSDSDSHFEQLMVNMLDERDRLLDTLRETQESLSLAQQRLQ
DVIYDRDSLQRQLNSALPQDIESLTGGLTGSKGADPPEFAALTKELNACREQLLEKEEEISELK
AERNNTRLLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEKVR
ERLRVSLERVSALEEELAAANQEIVALREQNVHIQRKMVSSEGSTESEHLDGMEPGQKVHEKRL
SNGSIDSTDDTSQIVELQELLEKQNYEMAQMKDRLAALSSRVGEVEQEAETARKDLIKTEEMNT
KYQRDIREAMAQKEDMEERITTLEKRYLSAQRESTSIHDMNDKLENELANKEAILRQMEEKNRQ
LQERLELAEQKLQQTMRKAETLPEVEAELAQRIAALTKAEERHGNIEERMRHLEGQLEEKNQEL
QRARQREKMNEEHNKRLSDTVDRLLTESNERLQLHLKERMAALEEKNVLIQESETFRKNLEESL
HDKERLAEEIEKLRSELDQMKMRTGSLIEPTISRTHLDTSAELRYSVGSLVDSQSDYRTTKVIR
RPRRGRMGVRRDEPKVKSLGDHEWNRTQQIGVLGSHPFESDTEMSDIDDDDRETIFSSMDLLSP
SGHSDAQTLAMMLQEQLDAINKEIRLIQEEKESTELRAEEIENRVASVSLEGLNLARVHPGTSI
TASVTASSLASSSPPSGHSTPKLTPRSPAREMDRMGVMTLPSDLRKHRRKIAVVEEDGREDKAT
IKCETSPPPTPRAIRMTHTLPSSYHNEARSSLSASLEPDRLGLGSANSSQDSLHKAPKKKGIKS
SIGRLFGKKEKARLGQLRGFMETEAAAQESLGLGKLGTQAEKDRRLKKKHELLEEARRKGLPFA
QWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQE
MVSLTSPSAPPTSRTPSGNVWVTHEEMENLAAPAKTKESEEGSWAQTLAYGDMNHEWIGNEWLP
SLGLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLNYDRKELERR
REASQHEIKDVLVWSNDRVIRWIQAIGLREYANNILESGVHGSLIALDENFDYSSLALLLQIPT
QNTQARQILEREYNNLLALGTERRLDESDDKNFRRGSTWRRQFPPREVHGISMMPGSSETLPAG
FRLTTTSGQSRKMTTDVASSRLQRLDNSTVRTYSC

hide sequence

RefSeq Acc Id:	XP_017450410 ⟸ XM_017594921
- Peptide Label:	isoform X11
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMCEVMPTINEDTPMSQRGSQSSGSDSDSHFEQLMVNMLDERDRLLDTLRETQESLSLAQQRLQ DVIYDRDSLQRQLNSALPQDIESLTGGLTGSKGADPPEFAALTKELNACREQLLEKEEEISELK AERNNTRLLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEKVR ERLRVSLERVSALEEELAAANQEIVALREQNVHIQRKMVSSEGSTESEHLDGMEPGQKVHEKRL SNGSIDSTDDTSQIVELQELLEKQNYEMAQMKDRLAALSSRVGEVEQEAETARKDLIKTEEMNT KYQRDIREAMAQKEDMEERITTLEKRYLSAQRESTSIHDMNDKLENELANKEAILRQMEEKNRQ LQERLELAEQKLQQTMRKAETLPEVEAELAQRIAALTKAEERHGNIEERMRHLEGQLEEKNQEL QRARQREKMNEEHNKRLSDTVDRLLTESNERLQLHLKERMAALEEKNVLIQESETFRKNLEESL HDKERLAEEIEKLRSELDQMKMRTGSLIEPTISRTHLDTSAELRYSVGSLVDSQSDYRTTKVIR RPRRGRMGVRRDEPKVKSLGDHEWNRTQQIGVLGSHPFESDTEMSDIDDDDRETIFSSMDLLSP SGHSDAQTLAMMLQEQLDAINKEIRLIQEEKESTELRAEEIENRVASVSLEGLNLARVHPGTSI TASVTASSLASSSPPSGHSTPKLTPRSPAREMDRMGVMTLPSDLRKHRRKIAVVEEDGREDKAT IKCETSPPPTPRAIRMTHTLPSSYHNEARSLSASLEPDRLGLGSANSSQDSLHKAPKKKGIKSS IGRLFGKKEKARLGQLRGFMETEAAAQESLGLGKLGTQAEKDRRLKKKHELLEEARRKGLPFAQ WDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEM VSLTSPSAPPTSRTPSGNVWVTHEEMENLAAPAKTKESEEGSWAQCPVFLQTLAYGDMNHEWIG NEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLNYDRK ELERRREASQHEIKDVLVWSNDRVIRWIQAIGLREYANNILESGVHGSLIALDENFDYSSLALL LQIPTQNTQARQILEREYNNLLALGTERRLDESDDKNFRRGSTWRRQFPPREVHGISMMPGSSE TLPAGFRLTTTSGQSRKMTTDVASSRLQRLDNSTVRTYSC hide sequence

Ensembl Acc Id:

ENSRNOP00000005862 ⟸ ENSRNOT00000005862

RefSeq Acc Id:	XP_038935376 ⟸ XM_039079448
- Peptide Label:	isoform X4
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935374 ⟸ XM_039079446
- Peptide Label:	isoform X2
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935385 ⟸ XM_039079457
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I6AM56 (UniProtKB/TrEMBL), F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935387 ⟸ XM_039079459
- Peptide Label:	isoform X16
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935389 ⟸ XM_039079461
- Peptide Label:	isoform X22
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935394 ⟸ XM_039079466
- Peptide Label:	isoform X27
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935391 ⟸ XM_039079463
- Peptide Label:	isoform X24
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935397 ⟸ XM_039079469
- Peptide Label:	isoform X30
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935390 ⟸ XM_039079462
- Peptide Label:	isoform X23
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935392 ⟸ XM_039079464
- Peptide Label:	isoform X25
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935398 ⟸ XM_039079470
- Peptide Label:	isoform X32
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935395 ⟸ XM_039079467
- Peptide Label:	isoform X28
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935401 ⟸ XM_039079473
- Peptide Label:	isoform X35
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935393 ⟸ XM_039079465
- Peptide Label:	isoform X26
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935400 ⟸ XM_039079472
- Peptide Label:	isoform X33
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935396 ⟸ XM_039079468
- Peptide Label:	isoform X29
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935404 ⟸ XM_039079476
- Peptide Label:	isoform X37
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935411 ⟸ XM_039079483
- Peptide Label:	isoform X46
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935399 ⟸ XM_039079471
- Peptide Label:	isoform X31
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935402 ⟸ XM_039079474
- Peptide Label:	isoform X34
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935403 ⟸ XM_039079475
- Peptide Label:	isoform X36
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935406 ⟸ XM_039079478
- Peptide Label:	isoform X40
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935409 ⟸ XM_039079481
- Peptide Label:	isoform X43

RefSeq Acc Id:	XP_038935405 ⟸ XM_039079477
- Peptide Label:	isoform X38
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935408 ⟸ XM_039079480
- Peptide Label:	isoform X42
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935407 ⟸ XM_039079479
- Peptide Label:	isoform X41
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935410 ⟸ XM_039079482
- Peptide Label:	isoform X44
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000094445 ⟸ ENSRNOT00000108079

Ensembl Acc Id:

ENSRNOP00000093332 ⟸ ENSRNOT00000119432

RefSeq Acc Id:	XP_063119844 ⟸ XM_063263774
- Peptide Label:	isoform X1
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119848 ⟸ XM_063263778
- Peptide Label:	isoform X3
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119845 ⟸ XM_063263775
- Peptide Label:	isoform X1
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119856 ⟸ XM_063263786
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I6AK94 (UniProtKB/TrEMBL), F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119849 ⟸ XM_063263779
- Peptide Label:	isoform X3
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119860 ⟸ XM_063263790
- Peptide Label:	isoform X18
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119850 ⟸ XM_063263780
- Peptide Label:	isoform X5
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119852 ⟸ XM_063263782
- Peptide Label:	isoform X7
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119851 ⟸ XM_063263781
- Peptide Label:	isoform X6
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119854 ⟸ XM_063263784
- Peptide Label:	isoform X9
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119847 ⟸ XM_063263777
- Peptide Label:	isoform X3
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119855 ⟸ XM_063263785
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063119857 ⟸ XM_063263787
- Peptide Label:	isoform X13
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119858 ⟸ XM_063263788
- Peptide Label:	isoform X15
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119853 ⟸ XM_063263783
- Peptide Label:	isoform X8
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119859 ⟸ XM_063263789
- Peptide Label:	isoform X17
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119863 ⟸ XM_063263793
- Peptide Label:	isoform X20
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119861 ⟸ XM_063263791
- Peptide Label:	isoform X19
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119864 ⟸ XM_063263794
- Peptide Label:	isoform X21
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119865 ⟸ XM_063263795
- Peptide Label:	isoform X39
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119866 ⟸ XM_063263796
- Peptide Label:	isoform X45
- UniProtKB:	F1M8A4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000109305 ⟸ ENSRNOT00000139907

Ensembl Acc Id:

ENSRNOP00000110837 ⟸ ENSRNOT00000174016

Ensembl Acc Id:

ENSRNOP00000104793 ⟸ ENSRNOT00000142386

Protein Domains

SAM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M8A4-F1-model_v2	AlphaFold	F1M8A4	1-1150	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305021	AgrOrtholog
BioCyc Gene	G2FUF-34185	BioCyc
Ensembl Genes	ENSRNOG00000004353	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005862	ENTREZGENE
	ENSRNOT00000005862.8	UniProtKB/TrEMBL
	ENSRNOT00000108079	ENTREZGENE
	ENSRNOT00000108079.2	UniProtKB/TrEMBL
	ENSRNOT00000119432	ENTREZGENE
	ENSRNOT00000119432.2	UniProtKB/TrEMBL
	ENSRNOT00000139907	ENTREZGENE
	ENSRNOT00000139907.1	UniProtKB/TrEMBL
	ENSRNOT00000142386	ENTREZGENE
	ENSRNOT00000142386.1	UniProtKB/TrEMBL
	ENSRNOT00000174016	ENTREZGENE
	ENSRNOT00000174016.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.150.50	UniProtKB/TrEMBL
InterPro	Liprin	UniProtKB/TrEMBL
	Liprin-alpha_SAM_rpt_1	UniProtKB/TrEMBL
	Liprin-alpha_SAM_rpt_2	UniProtKB/TrEMBL
	Liprin-alpha_SAM_rpt_3	UniProtKB/TrEMBL
	SAM	UniProtKB/TrEMBL
	SAM_type	UniProtKB/TrEMBL
KEGG Report	rno:362876	UniProtKB/TrEMBL
NCBI Gene	362876	ENTREZGENE
PANTHER	PTHR12587	UniProtKB/TrEMBL
	PTHR12587:SF6	UniProtKB/TrEMBL
Pfam	LIP-1	UniProtKB/TrEMBL
	SAM_1	UniProtKB/TrEMBL
	SAM_2	UniProtKB/TrEMBL
PhenoGen	Ppfia2	PhenoGen
PROSITE	SAM_DOMAIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004353	RatGTEx
SMART	SAM	UniProtKB/TrEMBL
Superfamily-SCOP	SAM_homology	UniProtKB/TrEMBL
UniProt	A0A8I6AK94	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AM56	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LRL6_RAT	UniProtKB/TrEMBL
	A0ABK0LXX7_RAT	UniProtKB/TrEMBL
	A0ABK0M6F1_RAT	UniProtKB/TrEMBL
	A6IGB9	ENTREZGENE, UniProtKB/TrEMBL
	F1M8A4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Ppfia2	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	Ppfia2_predicted	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Ppfia2_predicted	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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