Ppfia2 (PTPRF interacting protein alpha 2) - Rat Genome Database

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Gene: Ppfia2 (PTPRF interacting protein alpha 2) Rattus norvegicus
Analyze
Symbol: Ppfia2
Name: PTPRF interacting protein alpha 2
RGD ID: 1305021
Description: A structural constituent of presynapse. Involved in regulation of synaptic vesicle exocytosis. Is active in several cellular components, including glutamatergic synapse; presynaptic membrane; and synaptic vesicle. Orthologous to human PPFIA2 (PTPRF interacting protein alpha 2); INTERACTS WITH (+)-schisandrin B; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: liprin-alpha-2; LOC362876
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Ppfia2Tn(sb-T2/Bart3)2.339Mcwi  
Genetic Models: F344-Ppfia2Tn(sb-T2/Bart3)2.339Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8743,652,258 - 44,126,555 (+)NCBIGRCr8
mRatBN7.2741,765,716 - 42,240,104 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl741,765,575 - 42,239,599 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx743,671,707 - 44,144,439 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0745,874,782 - 46,347,515 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0745,652,995 - 46,125,395 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0748,548,932 - 49,045,852 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl748,867,664 - 49,042,455 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0748,563,521 - 48,568,045 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0748,658,858 - 49,058,116 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4745,140,154 - 45,616,620 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1745,160,426 - 45,636,728 (+)NCBI
Celera738,644,350 - 39,116,317 (+)NCBICelera
Cytogenetic Map7q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. Liprin-a2 promotes the presynaptic recruitment and turnover of RIM1/CASK to facilitate synaptic transmission. Spangler SA, etal., J Cell Biol. 2013 Jun 10;201(6):915-28. doi: 10.1083/jcb.201301011.
7. Regulation of KIF1A-Driven Dense Core Vesicle Transport: Ca2+/CaM Controls DCV Binding and Liprin-α/TANC2 Recruits DCVs to Postsynaptic Sites. Stucchi R, etal., Cell Rep. 2018 Jul 17;24(3):685-700. doi: 10.1016/j.celrep.2018.06.071.
8. Interaction between GRIP and liprin-alpha/SYD2 is required for AMPA receptor targeting. Wyszynski M, etal., Neuron 2002 Mar 28;34(1):39-52.
Additional References at PubMed
PMID:16186258   PMID:19056867   PMID:21618221   PMID:23791195   PMID:29439199  


Genomics

Comparative Map Data
Ppfia2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8743,652,258 - 44,126,555 (+)NCBIGRCr8
mRatBN7.2741,765,716 - 42,240,104 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl741,765,575 - 42,239,599 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx743,671,707 - 44,144,439 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0745,874,782 - 46,347,515 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0745,652,995 - 46,125,395 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0748,548,932 - 49,045,852 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl748,867,664 - 49,042,455 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0748,563,521 - 48,568,045 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0748,658,858 - 49,058,116 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4745,140,154 - 45,616,620 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1745,160,426 - 45,636,728 (+)NCBI
Celera738,644,350 - 39,116,317 (+)NCBICelera
Cytogenetic Map7q21NCBI
PPFIA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381281,257,975 - 81,759,350 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1281,257,975 - 81,759,553 (-)EnsemblGRCh38hg38GRCh38
GRCh371281,651,754 - 82,153,129 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361280,177,487 - 80,677,240 (-)NCBINCBI36Build 36hg18NCBI36
Build 341280,155,823 - 80,655,577NCBI
Celera1281,321,211 - 81,820,889 (-)NCBICelera
Cytogenetic Map12q21.31NCBI
HuRef1278,708,811 - 79,209,133 (-)NCBIHuRef
CHM1_11281,618,521 - 82,119,470 (-)NCBICHM1_1
T2T-CHM13v2.01281,236,956 - 81,738,412 (-)NCBIT2T-CHM13v2.0
Ppfia2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910106,305,129 - 106,769,329 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10106,306,200 - 106,771,813 (+)EnsemblGRCm39 Ensembl
GRCm3810106,469,500 - 106,933,468 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10106,470,339 - 106,935,952 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710105,907,395 - 106,369,574 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610105,874,449 - 106,336,628 (+)NCBIMGSCv36mm8
Celera10108,413,090 - 108,874,050 (+)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1055.39NCBI
Ppfia2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540519,839,092 - 20,286,578 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540519,837,749 - 20,291,666 (-)NCBIChiLan1.0ChiLan1.0
PPFIA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21089,297,594 - 89,800,504 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11289,293,993 - 89,796,899 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01278,768,756 - 79,271,630 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11281,879,812 - 82,381,524 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1281,879,812 - 82,376,917 (-)Ensemblpanpan1.1panPan2
PPFIA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11523,481,370 - 23,950,412 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1523,482,549 - 23,951,141 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1523,904,766 - 24,373,671 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01523,842,759 - 24,321,109 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1523,842,772 - 24,320,345 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11523,428,189 - 23,897,907 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01523,479,044 - 23,947,917 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01523,719,822 - 24,188,937 (-)NCBIUU_Cfam_GSD_1.0
Ppfia2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494536,381,131 - 36,821,732 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366982,094,374 - 2,531,465 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366982,090,768 - 2,531,366 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPFIA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl599,819,430 - 100,279,030 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1599,818,591 - 100,279,029 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25105,054,270 - 105,195,571 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPFIA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11176,740,204 - 77,237,990 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1176,736,719 - 77,079,140 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037168,176,151 - 168,685,075 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppfia2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624837629,302 - 1,111,081 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624837627,484 - 1,116,597 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ppfia2
3730 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:75
Interacting mature miRNAs:103
Transcripts:ENSRNOT00000005862
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74110969256793354Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat

Markers in Region
BE106419  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2742,224,388 - 42,224,548 (+)MAPPERmRatBN7.2
Rnor_6.0749,028,472 - 49,028,631NCBIRnor6.0
Rnor_5.0749,043,041 - 49,043,200UniSTSRnor5.0
RGSC_v3.4745,600,625 - 45,600,784UniSTSRGSC3.4
Celera739,101,136 - 39,101,295UniSTS
RH 3.4 Map7352.9UniSTS
Cytogenetic Map7q21UniSTS
BE120388  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2741,943,097 - 41,943,314 (+)MAPPERmRatBN7.2
Rnor_6.0748,726,382 - 48,726,598NCBIRnor6.0
Rnor_5.0748,740,852 - 48,741,068UniSTSRnor5.0
RGSC_v3.4745,318,191 - 45,318,407UniSTSRGSC3.4
Celera738,821,377 - 38,821,593UniSTS
RH 3.4 Map7348.41UniSTS
Cytogenetic Map7q21UniSTS
RH138710  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2742,143,149 - 42,143,307 (+)MAPPERmRatBN7.2
Rnor_6.0748,947,233 - 48,947,390NCBIRnor6.0
Rnor_5.0748,961,802 - 48,961,959UniSTSRnor5.0
RGSC_v3.4745,519,385 - 45,519,542UniSTSRGSC3.4
Celera739,019,912 - 39,020,069UniSTS
RH 3.4 Map7352.9UniSTS
Cytogenetic Map7q21UniSTS
AU048710  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2741,861,027 - 41,861,238 (+)MAPPERmRatBN7.2
Rnor_6.0748,643,650 - 48,643,860NCBIRnor6.0
Rnor_5.0748,657,799 - 48,658,009UniSTSRnor5.0
RGSC_v3.4745,234,729 - 45,234,939UniSTSRGSC3.4
Celera738,739,409 - 38,739,619UniSTS
Cytogenetic Map7q21UniSTS
AU049226  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2741,908,533 - 41,908,705 (+)MAPPERmRatBN7.2
Rnor_6.0748,691,818 - 48,691,989NCBIRnor6.0
Rnor_5.0748,706,288 - 48,706,459UniSTSRnor5.0
RGSC_v3.4745,283,627 - 45,283,798UniSTSRGSC3.4
Celera738,786,804 - 38,786,975UniSTS
Cytogenetic Map7q21UniSTS


Genetic Models
This gene Ppfia2 is modified in the following models/strains:


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 64
Low 49 41 8 41 8 9 8 18 37 7 8
Below cutoff 3 27 8 11 1 2 17 4 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000005862   ⟹   ENSRNOP00000005862
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl742,063,519 - 42,235,480 (+)Ensembl
Rnor_6.0 Ensembl748,867,664 - 49,042,455 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108079   ⟹   ENSRNOP00000094445
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl741,765,575 - 42,238,868 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119432   ⟹   ENSRNOP00000093332
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl741,765,575 - 42,239,599 (+)Ensembl
RefSeq Acc Id: NM_001108745   ⟹   NP_001102215
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,653,055 - 44,126,063 (+)NCBI
mRatBN7.2741,766,575 - 42,239,599 (+)NCBI
Rnor_6.0748,549,456 - 49,045,360 (+)NCBI
Rnor_5.0748,563,521 - 48,568,045 (+)NCBI
Rnor_5.0748,658,858 - 49,058,116 (+)NCBI
RGSC_v3.4745,140,154 - 45,616,620 (+)RGD
Celera738,644,350 - 39,116,317 (+)RGD
Sequence:
RefSeq Acc Id: XM_017594921   ⟹   XP_017450410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,653,169 - 44,126,555 (+)NCBI
mRatBN7.2741,770,850 - 42,240,104 (+)NCBI
Rnor_6.0748,549,462 - 49,045,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039079446   ⟹   XP_038935374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,653,169 - 44,126,555 (+)NCBI
mRatBN7.2741,766,690 - 42,240,093 (+)NCBI
RefSeq Acc Id: XM_039079448   ⟹   XP_038935376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,653,169 - 44,126,555 (+)NCBI
mRatBN7.2741,766,690 - 42,240,093 (+)NCBI
RefSeq Acc Id: XM_039079457   ⟹   XP_038935385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,653,169 - 44,126,555 (+)NCBI
mRatBN7.2741,770,850 - 42,238,688 (+)NCBI
RefSeq Acc Id: XM_039079459   ⟹   XP_038935387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,653,169 - 44,126,555 (+)NCBI
mRatBN7.2741,770,850 - 42,238,688 (+)NCBI
RefSeq Acc Id: XM_039079461   ⟹   XP_038935389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,827,878 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,240,104 (+)NCBI
RefSeq Acc Id: XM_039079462   ⟹   XP_038935390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,827,878 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,240,104 (+)NCBI
RefSeq Acc Id: XM_039079463   ⟹   XP_038935391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,827,878 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,240,104 (+)NCBI
RefSeq Acc Id: XM_039079464   ⟹   XP_038935392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,623 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,240,104 (+)NCBI
RefSeq Acc Id: XM_039079465   ⟹   XP_038935393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,623 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,240,104 (+)NCBI
RefSeq Acc Id: XM_039079466   ⟹   XP_038935394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,827,878 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,240,104 (+)NCBI
RefSeq Acc Id: XM_039079467   ⟹   XP_038935395
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,624 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,240,104 (+)NCBI
RefSeq Acc Id: XM_039079468   ⟹   XP_038935396
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,624 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,240,104 (+)NCBI
RefSeq Acc Id: XM_039079469   ⟹   XP_038935397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,827,878 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,240,104 (+)NCBI
RefSeq Acc Id: XM_039079470   ⟹   XP_038935398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,622 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,240,104 (+)NCBI
RefSeq Acc Id: XM_039079471   ⟹   XP_038935399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,827,878 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,238,688 (+)NCBI
RefSeq Acc Id: XM_039079472   ⟹   XP_038935400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,622 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,240,104 (+)NCBI
RefSeq Acc Id: XM_039079473   ⟹   XP_038935401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,623 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,240,104 (+)NCBI
RefSeq Acc Id: XM_039079474   ⟹   XP_038935402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,827,878 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,238,688 (+)NCBI
RefSeq Acc Id: XM_039079475   ⟹   XP_038935403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,621 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,238,688 (+)NCBI
RefSeq Acc Id: XM_039079476   ⟹   XP_038935404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,623 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,240,104 (+)NCBI
RefSeq Acc Id: XM_039079477   ⟹   XP_038935405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,621 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,238,688 (+)NCBI
RefSeq Acc Id: XM_039079478   ⟹   XP_038935406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,622 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,238,688 (+)NCBI
RefSeq Acc Id: XM_039079479   ⟹   XP_038935407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,622 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,238,688 (+)NCBI
RefSeq Acc Id: XM_039079480   ⟹   XP_038935408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,620 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,238,688 (+)NCBI
RefSeq Acc Id: XM_039079481   ⟹   XP_038935409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,621 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,238,688 (+)NCBI
RefSeq Acc Id: XM_039079482   ⟹   XP_038935410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,621 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,238,688 (+)NCBI
RefSeq Acc Id: XM_039079483   ⟹   XP_038935411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,827,878 - 44,126,555 (+)NCBI
mRatBN7.2741,941,790 - 42,240,104 (+)NCBI
RefSeq Acc Id: XM_063263774   ⟹   XP_063119844
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,652,258 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263775   ⟹   XP_063119845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,652,359 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263777   ⟹   XP_063119847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,653,169 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263778   ⟹   XP_063119848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,652,259 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263779   ⟹   XP_063119849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,652,359 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263780   ⟹   XP_063119850
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,653,169 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263781   ⟹   XP_063119851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,653,169 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263782   ⟹   XP_063119852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,653,169 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263783   ⟹   XP_063119853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,653,169 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263784   ⟹   XP_063119854
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,653,169 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263785   ⟹   XP_063119855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,653,169 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263786   ⟹   XP_063119856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,652,359 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263787   ⟹   XP_063119857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,653,169 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263788   ⟹   XP_063119858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,653,169 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263789   ⟹   XP_063119859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,621 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263790   ⟹   XP_063119860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,652,922 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263791   ⟹   XP_063119861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,827,878 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263793   ⟹   XP_063119863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,826,623 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263794   ⟹   XP_063119864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,827,878 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263795   ⟹   XP_063119865
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,827,904 - 44,126,555 (+)NCBI
RefSeq Acc Id: XM_063263796   ⟹   XP_063119866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8743,827,921 - 44,126,555 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001102215 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450410 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935374 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935376 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935385 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935387 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935389 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935390 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935391 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935392 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935393 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935394 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935395 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935396 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935397 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935398 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935399 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935400 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935401 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935402 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935403 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935404 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935405 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935406 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935407 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935408 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935409 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935410 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935411 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119844 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119845 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119847 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119848 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119849 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119850 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119851 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119852 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119853 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119854 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119855 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119856 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119857 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119858 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119859 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119860 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119861 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119863 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119864 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119865 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119866 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM16778 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005862
  ENSRNOP00000005862.6
  ENSRNOP00000093332
  ENSRNOP00000093332.1
  ENSRNOP00000094445
  ENSRNOP00000094445.1
RefSeq Acc Id: NP_001102215   ⟸   NM_001108745
- UniProtKB: A6IGB9 (UniProtKB/TrEMBL),   F1M8A4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450410   ⟸   XM_017594921
- Peptide Label: isoform X11
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000005862   ⟸   ENSRNOT00000005862
RefSeq Acc Id: XP_038935376   ⟸   XM_039079448
- Peptide Label: isoform X4
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935374   ⟸   XM_039079446
- Peptide Label: isoform X2
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935385   ⟸   XM_039079457
- Peptide Label: isoform X14
- UniProtKB: A0A8I6AM56 (UniProtKB/TrEMBL),   F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935387   ⟸   XM_039079459
- Peptide Label: isoform X16
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935389   ⟸   XM_039079461
- Peptide Label: isoform X22
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935394   ⟸   XM_039079466
- Peptide Label: isoform X27
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935391   ⟸   XM_039079463
- Peptide Label: isoform X24
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935397   ⟸   XM_039079469
- Peptide Label: isoform X30
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935390   ⟸   XM_039079462
- Peptide Label: isoform X23
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935392   ⟸   XM_039079464
- Peptide Label: isoform X25
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935398   ⟸   XM_039079470
- Peptide Label: isoform X32
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935395   ⟸   XM_039079467
- Peptide Label: isoform X28
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935401   ⟸   XM_039079473
- Peptide Label: isoform X35
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935393   ⟸   XM_039079465
- Peptide Label: isoform X26
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935400   ⟸   XM_039079472
- Peptide Label: isoform X33
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935396   ⟸   XM_039079468
- Peptide Label: isoform X29
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935404   ⟸   XM_039079476
- Peptide Label: isoform X37
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935411   ⟸   XM_039079483
- Peptide Label: isoform X46
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935399   ⟸   XM_039079471
- Peptide Label: isoform X31
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935402   ⟸   XM_039079474
- Peptide Label: isoform X34
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935403   ⟸   XM_039079475
- Peptide Label: isoform X36
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935406   ⟸   XM_039079478
- Peptide Label: isoform X40
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935409   ⟸   XM_039079481
- Peptide Label: isoform X43
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935405   ⟸   XM_039079477
- Peptide Label: isoform X38
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935408   ⟸   XM_039079480
- Peptide Label: isoform X42
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935407   ⟸   XM_039079479
- Peptide Label: isoform X41
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935410   ⟸   XM_039079482
- Peptide Label: isoform X44
- UniProtKB: F1M8A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000094445   ⟸   ENSRNOT00000108079
RefSeq Acc Id: ENSRNOP00000093332   ⟸   ENSRNOT00000119432
RefSeq Acc Id: XP_063119844   ⟸   XM_063263774
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063119848   ⟸   XM_063263778
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063119845   ⟸   XM_063263775
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063119856   ⟸   XM_063263786
- Peptide Label: isoform X12
- UniProtKB: A0A8I6AK94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119849   ⟸   XM_063263779
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063119860   ⟸   XM_063263790
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063119850   ⟸   XM_063263780
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063119852   ⟸   XM_063263782
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063119851   ⟸   XM_063263781
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063119854   ⟸   XM_063263784
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063119847   ⟸   XM_063263777
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063119855   ⟸   XM_063263785
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063119857   ⟸   XM_063263787
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063119858   ⟸   XM_063263788
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063119853   ⟸   XM_063263783
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063119859   ⟸   XM_063263789
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063119863   ⟸   XM_063263793
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063119861   ⟸   XM_063263791
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063119864   ⟸   XM_063263794
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063119865   ⟸   XM_063263795
- Peptide Label: isoform X39
RefSeq Acc Id: XP_063119866   ⟸   XM_063263796
- Peptide Label: isoform X45
Protein Domains
SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M8A4-F1-model_v2 AlphaFold F1M8A4 1-1150 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305021 AgrOrtholog
BioCyc Gene G2FUF-34185 BioCyc
Ensembl Genes ENSRNOG00000004353 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005862.7 UniProtKB/TrEMBL
  ENSRNOT00000108079.1 UniProtKB/TrEMBL
  ENSRNOT00000119432 ENTREZGENE
  ENSRNOT00000119432.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro Liprin UniProtKB/TrEMBL
  Liprin-alpha_SAM_rpt_1 UniProtKB/TrEMBL
  Liprin-alpha_SAM_rpt_2 UniProtKB/TrEMBL
  Liprin-alpha_SAM_rpt_3 UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM_type UniProtKB/TrEMBL
KEGG Report rno:362876 UniProtKB/TrEMBL
NCBI Gene 362876 ENTREZGENE
PANTHER PTHR12587 UniProtKB/TrEMBL
  PTHR12587:SF6 UniProtKB/TrEMBL
Pfam SAM_1 UniProtKB/TrEMBL
  SAM_2 UniProtKB/TrEMBL
PhenoGen Ppfia2 PhenoGen
PROSITE SAM_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004353 RatGTEx
SMART SAM UniProtKB/TrEMBL
Superfamily-SCOP SAM_homology UniProtKB/TrEMBL
UniProt A0A8I6AK94 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AM56 ENTREZGENE, UniProtKB/TrEMBL
  A6IGB9 ENTREZGENE, UniProtKB/TrEMBL
  F1M8A4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ppfia2  protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2   Ppfia2_predicted  protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ppfia2_predicted  protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED