Ogfod3 (2-oxoglutarate and iron-dependent oxygenase domain containing 3) - Rat Genome Database

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Gene: Ogfod3 (2-oxoglutarate and iron-dependent oxygenase domain containing 3) Rattus norvegicus
Analyze
Symbol: Ogfod3
Name: 2-oxoglutarate and iron-dependent oxygenase domain containing 3
RGD ID: 1305007
Description: Predicted to enable several functions, including L-ascorbic acid binding activity; dioxygenase activity; and iron ion binding activity. Predicted to be located in membrane. Orthologous to human OGFOD3 (2-oxoglutarate and iron dependent oxygenase domain containing 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aconitine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3; LOC303749; PKHD domain-containing transmembrane protein C17orf101 homolog; RGD1305007; similar to RIKEN cDNA 1110031I02
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,950,640 - 106,978,422 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10106,950,641 - 106,978,992 (-)EnsemblGRCr8
mRatBN7.210106,452,334 - 106,480,632 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,452,329 - 106,480,134 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10111,555,004 - 111,582,344 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010111,018,057 - 111,045,397 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,372,769 - 106,400,559 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,378,533 - 110,406,377 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,378,534 - 110,406,377 (-)Ensemblrn6Rnor6.0
Rnor_5.010109,965,250 - 109,993,035 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410110,409,024 - 110,436,809 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera10104,990,920 - 105,018,520 (-)NCBICelera
RGSC_v3.110110,423,528 - 110,451,313 (-)NCBI
Cytogenetic Map10q32.3NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:19946888   PMID:23376485  


Genomics

Comparative Map Data
Ogfod3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,950,640 - 106,978,422 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10106,950,641 - 106,978,992 (-)EnsemblGRCr8
mRatBN7.210106,452,334 - 106,480,632 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,452,329 - 106,480,134 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10111,555,004 - 111,582,344 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010111,018,057 - 111,045,397 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,372,769 - 106,400,559 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,378,533 - 110,406,377 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,378,534 - 110,406,377 (-)Ensemblrn6Rnor6.0
Rnor_5.010109,965,250 - 109,993,035 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410110,409,024 - 110,436,809 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera10104,990,920 - 105,018,520 (-)NCBICelera
RGSC_v3.110110,423,528 - 110,451,313 (-)NCBI
Cytogenetic Map10q32.3NCBI
OGFOD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,389,210 - 82,418,586 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1782,389,210 - 82,418,637 (-)Ensemblhg38GRCh38
GRCh371780,347,086 - 80,376,462 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,943,389 - 77,969,751 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1776,938,858 - 76,965,271 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,745,657 - 75,772,035 (-)NCBIHuRef
CHM1_11780,433,203 - 80,462,717 (-)NCBICHM1_1
T2T-CHM13v2.01783,258,229 - 83,287,516 (-)NCBIT2T-CHM13v2.0
Ogfod3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911121,068,419 - 121,095,474 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11121,068,417 - 121,095,537 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3811121,177,593 - 121,204,648 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11121,177,591 - 121,204,711 (-)Ensemblmm10GRCm38
MGSCv3711121,038,907 - 121,065,962 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3611120,993,683 - 121,020,738 (-)NCBIMGSCv36mm8
Celera11132,915,784 - 132,943,487 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1185.04NCBI
Ogfod3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955506719,873 - 745,036 (+)Ensembl
ChiLan1.0NW_004955506719,746 - 744,983 (+)NCBIChiLan1.0ChiLan1.0
OGFOD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,931,873 - 98,958,192 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,836,002 - 103,862,252 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,803,623 - 76,829,953 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,611,177 - 82,636,729 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,611,177 - 82,636,729 (-)EnsemblpanPan2panpan1.1
OGFOD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha9561,064 - 579,542 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.09552,375 - 570,832 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9551,916 - 570,792 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19546,929 - 565,405 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.09708,122 - 726,315 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.09782,950 - 801,159 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ogfod3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602516,868 - 534,814 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493692333,539 - 57,748 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493692335,272 - 51,240 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OGFOD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12677,179 - 689,926 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.112677,146 - 688,195 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21232,842 - 44,191 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OGFOD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,304,837 - 74,337,948 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1674,303,756 - 74,338,815 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607745,949,227 - 45,973,307 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ogfod3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480111,167,544 - 11,193,248 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462480111,159,113 - 11,192,613 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ogfod3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1962,820,228 - 62,849,279 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ogfod3
93 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:171
Count of miRNA genes:137
Interacting mature miRNAs:148
Transcripts:ENSRNOT00000054925
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1065390777107713808Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093723381107556066Rat
8657410Bp374Blood pressure QTL 374heart left ventricle size trait (VT:0002753)heart left ventricle end-diastolic diameter (CMO:0000982)1067476608107713808Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063719161107713808Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
12903252Cm113Cardiac mass QTL 1130.047heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068920187107713808Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1064939013107713808Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)1065307813107713808Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076951790107713808Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1073599825107713808Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1089039175107713808Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070698731107713808Rat
12903269Am15Aortic mass QTL 150.042aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
12903266Cm114Cardiac mass QTL 1140.02heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1066817119107713808Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1097202388107556066Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1581559Eae18Experimental allergic encephalomyelitis QTL 180.00002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1066108888107555881Rat
12880372Am12Aortic mass QTL 120.003aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
12880375Kidm66Kidney mass QTL 660.009kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087807758107713808Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
12880370Cm105Cardiac mass QTL 1050.008heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
12880371Cm106Cardiac mass QTL 1060.007heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1076128947107713808Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1091127270107556066Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)1061997479106997479Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091727883107713808Rat
11565453Kidm58Kidney mass QTL 580.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
2301405Cm69Cardiac mass QTL 690.031heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1097202388107556066Rat

Markers in Region
RH141901  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210106,452,450 - 106,452,665 (+)MAPPERmRatBN7.2
Rnor_6.010110,378,650 - 110,378,864NCBIRnor6.0
Rnor_5.010109,965,367 - 109,965,581UniSTSRnor5.0
RGSC_v3.410110,409,141 - 110,409,355UniSTSRGSC3.4
Celera10104,991,037 - 104,991,251UniSTS
Cytogenetic Map10q32.3UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000054925   ⟹   ENSRNOP00000051808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10106,950,641 - 106,978,422 (-)Ensembl
mRatBN7.2 Ensembl10106,452,329 - 106,480,134 (-)Ensembl
Rnor_6.0 Ensembl10110,378,534 - 110,406,377 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115414   ⟹   ENSRNOP00000091856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10106,950,641 - 106,977,667 (-)Ensembl
mRatBN7.2 Ensembl10106,452,329 - 106,479,378 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000131994   ⟹   ENSRNOP00000100462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10106,951,273 - 106,978,877 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167906   ⟹   ENSRNOP00000101035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10106,950,641 - 106,978,992 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000170402   ⟹   ENSRNOP00000102149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10106,950,641 - 106,977,925 (-)Ensembl
RefSeq Acc Id: NM_001013976   ⟹   NP_001013998
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,950,640 - 106,978,422 (-)NCBI
mRatBN7.210106,452,334 - 106,480,121 (-)NCBI
Rnor_6.010110,378,533 - 110,406,377 (-)NCBI
Rnor_5.010109,965,250 - 109,993,035 (-)NCBI
RGSC_v3.410110,409,024 - 110,436,809 (-)RGD
Celera10104,990,920 - 105,018,520 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001013998 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88238 (Get FASTA)   NCBI Sequence Viewer  
  EDM06934 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000051808
  ENSRNOP00000051808.2
GenBank Protein Q5M843 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001013998   ⟸   NM_001013976
- UniProtKB: Q5M843 (UniProtKB/Swiss-Prot),   A6HLM9 (UniProtKB/TrEMBL),   A0A8I6GJA4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000051808   ⟸   ENSRNOT00000054925
Ensembl Acc Id: ENSRNOP00000091856   ⟸   ENSRNOT00000115414
Ensembl Acc Id: ENSRNOP00000100462   ⟸   ENSRNOT00000131994
Ensembl Acc Id: ENSRNOP00000102149   ⟸   ENSRNOT00000170402
Ensembl Acc Id: ENSRNOP00000101035   ⟸   ENSRNOT00000167906
Protein Domains
Fe2OG dioxygenase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M843-F1-model_v2 AlphaFold Q5M843 1-315 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697989
Promoter ID:EPDNEW_R8513
Type:initiation region
Name:Ogfod3_1
Description:2-oxoglutarate and iron-dependent oxygenase domain containing3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.010110,406,335 - 110,406,395EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305007 AgrOrtholog
BioCyc Gene G2FUF-22365 BioCyc
Ensembl Genes ENSRNOG00000036668 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000054925 ENTREZGENE
  ENSRNOT00000054925.3 UniProtKB/Swiss-Prot
Gene3D-CATH q2cbj1_9rhob like domain UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7326036 IMAGE-MGC_LOAD
InterPro OGFOD3 UniProtKB/Swiss-Prot
  Oxoglu/Fe-dep_dioxygenase UniProtKB/Swiss-Prot
  Pro_4_hyd_alph UniProtKB/Swiss-Prot
  Pro_4_hyd_alph_FE2OG_OXY UniProtKB/Swiss-Prot
KEGG Report rno:303749 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109015 IMAGE-MGC_LOAD
NCBI Gene 303749 ENTREZGENE
PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 3 UniProtKB/Swiss-Prot
  PTHR14650 UniProtKB/Swiss-Prot
Pfam 2OG-FeII_Oxy_3 UniProtKB/Swiss-Prot
PhenoGen Ogfod3 PhenoGen
PROSITE FE2OG_OXY UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000036668 RatGTEx
SMART P4Hc UniProtKB/Swiss-Prot
UniProt A0A8I6GJA4 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L7P2_RAT UniProtKB/TrEMBL
  A0ABK0LI90_RAT UniProtKB/TrEMBL
  A0ABK0LL47_RAT UniProtKB/TrEMBL
  A6HLM9 ENTREZGENE, UniProtKB/TrEMBL
  OGFD3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-07 Ogfod3  2-oxoglutarate and iron-dependent oxygenase domain containing 3  RGD1305007  similar to RIKEN cDNA 1110031I02  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1305007  similar to RIKEN cDNA 1110031I02  RGD1305007_predicted  similar to RIKEN cDNA 1110031I02 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1305007_predicted  similar to RIKEN cDNA 1110031I02 (predicted)  LOC303749_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC303749_predicted  similar to RIKEN cDNA 1110031I02 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL