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Gene: Sfswap (splicing factor SWAP) Rattus norvegicus

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Symbol:

Sfswap

Name:

splicing factor SWAP

RGD ID:

1305004

Description:

Predicted to enable RNA binding activity. Involved in negative regulation of mRNA splicing, via spliceosome. Predicted to be located in nucleus. Orthologous to human SFSWAP (splicing factor SWAP); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; decabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC304431; MGC125102; serine/arginine-rich splicing factor 8; Sfrs8; splicing factor SWAP homolog; splicing factor, arginine/serine-rich 8; splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila); splicing factor, suppressor of white-apricot family; splicing factor, suppressor of white-apricot homolog; splicing factor, suppressor of white-apricot homolog (Drosophila); Srsf8; suppressor of white apricot protein homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SFSWAP (splicing factor SWAP)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Sfswap (splicing factor SWAP)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sfswap (splicing factor SWAP)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SFSWAP (splicing factor SWAP)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SFSWAP (splicing factor SWAP)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sfswap (splicing factor SWAP)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SFSWAP (splicing factor SWAP)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SFSWAP (splicing factor SWAP)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sfswap (splicing factor SWAP)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sfswap (splicing factor SWAP)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SFSWAP (splicing factor SWAP)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Sfswap (splicing factor SWAP)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sfswap (splicing factor SWAP)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	swp-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	swp-1	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	su(w[a])	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	su(w[a])	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sfswap	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sfswap	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	32,745,704 - 32,816,032 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	32,745,704 - 32,816,032 (-)	Ensembl				GRCr8
mRatBN7.2	12	27,109,607 - 27,179,941 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	27,109,611 - 27,179,884 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	28,246,004 - 28,316,319 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	28,856,567 - 28,926,883 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	27,918,044 - 27,988,360 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	30,740,563 - 30,811,015 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	30,740,520 - 30,811,054 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	32,675,284 - 32,745,308 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	28,179,091 - 28,249,425 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	28,813,478 - 28,883,636 (-)	NCBI		Celera
RGSC_v3.1	12	28,039,375 - 28,112,849 (-)	NCBI
Cytogenetic Map	12	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

cobalt dichloride (ISO)

coumarin (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

indometacin (ISO)

ivermectin (ISO)

methotrexate (ISO)

paracetamol (EXP)

phenobarbital (ISO)

serpentine asbestos (ISO)

sodium arsenite (ISO)

thiram (ISO)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

alternative mRNA splicing, via spliceosome (ISO)

mRNA 5'-splice site recognition (IBA,ISO)

mRNA processing (IEA)

negative regulation of mRNA splicing, via spliceosome (IDA)

RNA processing (IEA)

RNA splicing (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

protein binding (ISO)

RNA binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Tau exon 10, whose missplicing causes frontotemporal dementia, is regulated by an intricate interplay of cis elements and trans factors.	Wang J, etal., J Neurochem. 2004 Mar;88(5):1078-90.

Additional References at PubMed

PMID:8940107	PMID:12477932

Genomics

Comparative Map Data

Sfswap
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	32,745,704 - 32,816,032 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	32,745,704 - 32,816,032 (-)	Ensembl				GRCr8
mRatBN7.2	12	27,109,607 - 27,179,941 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	27,109,611 - 27,179,884 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	28,246,004 - 28,316,319 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	28,856,567 - 28,926,883 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	27,918,044 - 27,988,360 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	30,740,563 - 30,811,015 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	30,740,520 - 30,811,054 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	32,675,284 - 32,745,308 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	28,179,091 - 28,249,425 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	28,813,478 - 28,883,636 (-)	NCBI		Celera
RGSC_v3.1	12	28,039,375 - 28,112,849 (-)	NCBI
Cytogenetic Map	12	q13	NCBI

SFSWAP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	131,711,090 - 131,799,738 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	131,711,081 - 131,799,738 (+)	Ensembl			hg38	GRCh38
GRCh37	12	132,195,635 - 132,284,283 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	130,761,588 - 130,850,235 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	130,861,864 - 130,950,512	NCBI
Celera	12	131,812,182 - 131,900,934 (+)	NCBI		Celera
Cytogenetic Map	12	q24.33	NCBI
HuRef	12	129,080,987 - 129,170,070 (+)	NCBI		HuRef
CHM1_1	12	132,010,269 - 132,105,145 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	131,753,414 - 131,843,835 (+)	NCBI		T2T-CHM13v2.0

Sfswap
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	129,578,286 - 129,648,448 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	129,578,285 - 129,648,448 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	129,501,231 - 129,571,384 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	129,501,221 - 129,571,384 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	130,007,106 - 130,077,259 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	129,815,939 - 129,886,092 (+)	NCBI		MGSCv36	mm8
Celera	5	126,543,991 - 126,614,293 (+)	NCBI		Celera
Cytogenetic Map	5	G1.3	NCBI
cM Map	5	68.13	NCBI

Sfswap
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	808,632 - 871,402 (-)	Ensembl
ChiLan1.0	NW_004955482	808,684 - 871,377 (-)	NCBI	ChiLan1.0	ChiLan1.0

SFSWAP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	139,799,194 - 139,887,413 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	139,795,885 - 139,883,919 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	129,362,704 - 129,450,678 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	133,793,149 - 133,881,150 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	133,793,300 - 133,880,910 (+)	Ensembl			panPan2	panpan1.1

SFSWAP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	1,035,059 - 1,104,730 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	1,035,074 - 1,104,694 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	1,083,285 - 1,153,081 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	1,101,263 - 1,171,503 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	1,101,269 - 1,171,494 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	1,038,422 - 1,108,212 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	1,134,994 - 1,204,741 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	1,058,218 - 1,128,003 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sfswap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	122,600,083 - 122,666,141 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936660	2,054,978 - 2,121,279 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936660	2,055,180 - 2,121,008 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SFSWAP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	23,516,257 - 23,594,257 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	23,516,253 - 23,594,252 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	24,981,763 - 25,059,559 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SFSWAP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	127,086,690 - 127,177,327 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	127,086,668 - 127,177,324 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	117,843,829 - 117,940,423 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sfswap
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	27,588,285 - 27,656,660 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624747	27,588,684 - 27,653,704 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sfswap
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	24,400,485 - 24,470,880 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sfswap
640 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	258
Count of miRNA genes:	165
Interacting mature miRNAs:	190
Transcripts:	ENSRNOT00000001235
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24805022	52308831	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	50386405	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	25989355	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	1	33700600	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	29775522	42298555	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	49212240	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	1	33700556	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	18749469	36488809	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	18749469	34312613	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	29636637	37764351	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	7901625	33938215	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	33700556	Rat

Markers in Region

D16S505

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	27,172,029 - 27,172,147 (+)	MAPPER	mRatBN7.2
mRatBN7.2	3	129,052,956 - 129,053,750 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	135,738,830 - 135,739,623	NCBI	Rnor6.0
Rnor_6.0	12	30,803,111 - 30,803,228	NCBI	Rnor6.0
Rnor_5.0	12	32,737,419 - 32,737,536	UniSTS	Rnor5.0
Rnor_5.0	3	142,185,974 - 142,186,767	UniSTS	Rnor5.0
RGSC_v3.4	3	129,992,101 - 129,992,894	UniSTS	RGSC3.4
RGSC_v3.4	12	28,241,572 - 28,241,689	UniSTS	RGSC3.4
Celera	12	28,875,783 - 28,875,900	UniSTS
Celera	3	127,675,514 - 127,676,307	UniSTS
Cytogenetic Map	3	q41	UniSTS
Cytogenetic Map	12	q13	UniSTS

AW212079

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	27,109,739 - 27,109,833 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	30,740,696 - 30,740,789	NCBI	Rnor6.0
Rnor_5.0	12	32,675,417 - 32,675,510	UniSTS	Rnor5.0
RGSC_v3.4	12	28,179,221 - 28,179,314	UniSTS	RGSC3.4
Celera	12	28,813,608 - 28,813,701	UniSTS
Cytogenetic Map	12	q13	UniSTS

BF405946

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	27,131,925 - 27,132,119 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	30,762,880 - 30,763,073	NCBI	Rnor6.0
Rnor_5.0	12	32,697,601 - 32,697,794	UniSTS	Rnor5.0
RGSC_v3.4	12	28,201,405 - 28,201,598	UniSTS	RGSC3.4
Celera	12	28,835,792 - 28,835,985	UniSTS
RH 3.4 Map	12	447.0	UniSTS
Cytogenetic Map	12	q13	UniSTS

RH135132

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	27,129,548 - 27,130,794 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	30,760,503 - 30,761,748	NCBI	Rnor6.0
Rnor_5.0	12	32,695,224 - 32,696,469	UniSTS	Rnor5.0
RGSC_v3.4	12	28,199,028 - 28,200,273	UniSTS	RGSC3.4
Celera	12	28,833,415 - 28,834,660	UniSTS
RH 3.4 Map	12	454.3	UniSTS
Cytogenetic Map	12	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001034924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001400984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC091384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001235 ⟹ ENSRNOP00000001235

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	30,740,566 - 30,810,964 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077977 ⟹ ENSRNOP00000070951

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	32,745,704 - 32,816,032 (-)	Ensembl
mRatBN7.2 Ensembl	12	27,109,611 - 27,179,884 (-)	Ensembl
Rnor_6.0 Ensembl	12	30,740,520 - 30,811,054 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	30,750,888 - 30,751,544 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093237 ⟹ ENSRNOP00000076174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	32,745,704 - 32,816,032 (-)	Ensembl
mRatBN7.2 Ensembl	12	27,109,611 - 27,179,884 (-)	Ensembl
Rnor_6.0 Ensembl	12	30,740,563 - 30,811,000 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	30,740,566 - 30,762,467 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093286

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	30,809,207 - 30,811,000 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093391

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	30,807,853 - 30,808,550 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093652

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	30,741,155 - 30,742,491 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093734 ⟹ ENSRNOP00000076147

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	30,761,901 - 30,770,791 (-)	Ensembl

RefSeq Acc Id:

NM_001034924 ⟹ NP_001030096

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	32,745,707 - 32,815,976 (-)	NCBI
mRatBN7.2	12	27,109,610 - 27,179,884 (-)	NCBI
Rnor_6.0	12	30,740,566 - 30,810,964 (-)	NCBI
Rnor_5.0	12	32,675,284 - 32,745,308 (-)	NCBI
RGSC_v3.4	12	28,179,091 - 28,249,425 (-)	RGD
Celera	12	28,813,478 - 28,883,636 (-)	RGD

Sequence:

show sequence

CGAAGAGGATGCGGCGCCTTTGACTGAGAGGGTAGGCCAGGCGAGGCATCAGGGACGTTGTTCG
GCACAGCAGCAGACCGGCCCGGACGTCGTGGACGCTGTCATGTACGGTGCCGGCGGGGGCCGCG
CCAAGGCGGAGAGGAAAGGCGGAGTGAAGGAGGAGGCCGGGCCCGGTGGCACCGGCACTGGGGG
CAACCGGGTGGAGCTTCTGGTTTTCGGCTATGCCTGCAAGTTGTTCCGCGACGACGAGCGGGCT
TTGGCCCAAGAACAGGGACAGCACCTCATCCCCTGGATGGGGGACCACAAGATCCTCATCGACA
GATACGACGGGCGTGGTCACCTGCATGACCTCTCCGCCTACGATGCTGAGTACGCCACGTGGAA
CCGAGACTACCAGCTGTCTGAAGAGGAGGCGCGGGTAGAGGCGCTGTGTGATGAAGAGAGAGGA
AGAATACAAAAGATTGAGTGAAGCGCTGGCGGAGGATGGGAACTACAGTGCCGTAGGGTTCACT
TACGGCAGTGACTATTACGACCCGTCAGAGCCCACAGAGGAGGAGGAGCCCTCGAAGCAGAGAG
AAAAAAGTGAGGCTGAAAACTTGGAAGAAAATGAGGAGCCTTTCATCGCCCCTTTAGGACTAAG
CGTCCCGTCTGACGTGGAGCTGCCACCAACAGCCAAAATGCATGCCATCATCGAGCGCACAGCC
AACTTCGTATGCAAGCAGGGAGCACAGTTCGAGATCATGCTGAAGGCCAAGCAAGCACGGAACT
CACAGTTCGACTTCCTGCGGTTTGATCACTACCTCAACCCCTACTACAAGTTCATCCAGAAAGC
CATGAAGGAAGGACGGTACACGGTGCTAGCTGAGAGCAAGAGCGAGGAGAAGAAAAAGTCTGGG
CCAACCTCCGACAATGAAGAGGAAGATGATGAGGAAGATGGGAGTTACCTGCACCCGTCTCTCT
TTGCTTCCAAGAAGAGCAGCCGCCTGGAAGAGCTGATGAAGCCCTTGAAGGTGGTAGACCCGGA
TCACCCTCTAGCAGCCCTTGTCCGGAAAGCACAGGCTGACAGCTCAGCCCCGGCCCCACCCACT
GCAGATGGCACTCCTGCTCAGCCCTCCCAGGTGGAGTACACGGCAGACTCAACCGTGGCAGCCA
TGTACTACAGCTACTACATGCTGCCAGATGGCACCTACTGCCTGGCACCACCCCCACCCGGGAT
CGATGTGGCTACTTACTACAGCACCCTTCCTGCTGGGGTGACTGTGTCCAGCTCACCTGGTGTG
ACCACGACTGTACCACCACCTCCTGGGACCACACCTCCTCCACCCCCAACCACAGCTGAGTCAA
GCAGCGGGGTTACCTCCACAACCACCACCACAAGTGCGCTTGCTCCCGTGGCCATCATACCCCC
GCCCCCTGACATCCAGCCTGTGATTGACAAGCTGGCAGAGTACGTCGCCAGAAACGGCCTTAAA
TTTGAGACCAGTGTTCGAGCCAAGAACGATCAGAGATTTGAATTCCTTCAACCCTGGCACCAGT
ACAACGCCTACTACGAGTTTAAGAAGCAGTTCTTCCTGCAGAAGGAAGGAGGCGGTAGCACACA
GGCAGCATCAACAGCTGAAGAGGCTCCCACAGAAACCGCTGTTGAAGAGTCAAGTGAAGCTGGA
GAGGACGGCGCTCCTGAGGCTTCTTTTGCTCCAATAAGCTTTGCCATCAAAGCCAAAGAAAATG
ACCTACTTCCCCTGGAAAAAAACCGCGTCAAGCTGGACGATGATAGTGAGGAAGATGAGGAAAG
CAGGGAGTGCCAGGAAAGCACAAGCAGTGTGGCCAACCCCAGCCCAGCCGCAGCCCCTCCCTCT
GCAGTGGTGGAGGAGAAGAAACCGCAGCTTACCCAAGAGGAGCTCGAAGCTAAGCAAGCAAAAC
AAAAGCTGGAGGACCGCCTTGCTGCTGCCGCCCGGGAAAAGCTAGCTCAGGCGTCCAAGGAGTC
GAAGGAGAAGCAGCTTCAGGCTGAACGGAAGAGGAAAGCTGCTTTGTTTCTGCAGACCTTAAAA
AACCCTCTTCCAGATGCAGAAGTTGGAAAACTTGAGGAGAGCACTTTCGGAGTTGAGGAAACTG
GTGTCATGCCCTGTCCTCTGCTGGTTGGAGGTAGAACCCTGCCCATGTTGGAAGGGAAGCCTCC
AGAAAGGCCTTCAAGTAGATGCAGAGACCCACCAAGAGAAGAAGAAAGAGAGAAGAAGAAGAAG
AAGCACAAAAAACGGTCTCGAACGAGGTCCCGCTCCCCCAAGTACCACTCGTCTTCCAAGCCCA
GGTCTAGATCCCACTCAAAAGCAAAGCACTCCCTGCCCAGTGCCTACCGGACAGTGCGGCGGTC
GAGGTCACGGTCTCGGTCCCCAAGAAGGAGAGCTCACTCTCCAGAGAGACGACGGGAAGACAGG
AGTGTCCCCACAGCCTACCGGATGAGCGGCAGCCCTGGAGTCAGCAGGAAACGGACCCGTTCCA
GAAGTCCCCATGAGAAGAAGAAGAAACGGCGCTCACGCTCTCGCACCAAGGCCAAGGCCCGGTC
GCAGTCAACTTCCCCGAGTAAACAGGCAGCACAGCGTCCCTCGGCCCACTCAGCCCACTCGGCC
AGCATCTCTCCTGTGGAGAGCCGAGGTTCCTCCCAGGAACGATCCAGGGGGGTTTCTCAGGAAA
AAGATGGCCAGATCTCCTCAGCAATCGTCTCCTCTGTGCAGAGCAAAATAACTCAGGATCTCAT
GGCCAAAGTAAGAGCAATGCTCGCAGCTTCAAAAAACCTGCAGACCAGCGCGTCCTGAGAGGGC
AGCCACGGAGCCAGCCCCTGGCGAGCAGCATGGCTGTGGCCCTGGCTGTGGCTACAGGTGCTGG
GCTACTGCTCAGAGCAGCCACAGTCCAGAAGTCAGAAGCTGAGCTGCAAGCTCTGTGCCGACCT
CCATGCGGCTCTCCAGGTTCTCCAGCCCAACTCCCTGGGTCAGTCGGTGGCTTTTGTAAATTTT
TGGTGACATTTTCTGTTTCAGATTTTTGACCAGCAGTCTCTTACCTGTATATATGTAAATATAT
CATGTTTCTGTGAAAATGTATTATCAAATAAAATGGGAAACACCTTTTCTAGCTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001400984 ⟹ NP_001387913

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	32,745,704 - 32,816,032 (-)	NCBI
mRatBN7.2	12	27,109,607 - 27,179,940 (-)	NCBI

RefSeq Acc Id:

XM_006249269 ⟹ XP_006249331

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	32,745,704 - 32,816,018 (-)	NCBI
mRatBN7.2	12	27,109,607 - 27,179,939 (-)	NCBI
Rnor_6.0	12	30,740,563 - 30,811,014 (-)	NCBI
Rnor_5.0	12	32,675,284 - 32,745,308 (-)	NCBI

Sequence:

show sequence

GTTGCGTTTCCTCCATTTTGTGGCTCGCTATGGCGGCTGTGTTGAAGTTACGAAGAGGATGCGG
CGCCTTTGACTGAGAGGGTAGGCCAGGCGAGGCATCAGGGACGTTGTTCGGCACAGCAGCAGAC
CGGCCCGGACGTCGTGGACGCTGTCATGTACGGTGCCGGCGGGGGCCGCGCCAAGGCGGAGAGG
AAAGGCGGAGTGAAGGAGGAGGCCGGGCCCGGTGGCACCGGCACTGGGGGCAACCGGGTGGAGC
TTCTGGTTTTCGGCTATGCCTGCAAGTTGTTCCGCGACGACGAGCGGGCTTTGGCCCAAGAACA
GGGACAGCACCTCATCCCCTGGATGGGGGACCACAAGATCCTCATCGACAGATACGACGGGCGT
GGTCACCTGCATGACCTCTCCGCCTACGATGCTGAGTACGCCACGTGGAACCGAGACTACCAGC
TGTCTGAAGAGGAGGCGCGGGTAGAGGCGCTGTGTGATGAAGAGAGGTATTTAGCCTTGCATAC
GGACTTGCTTGAGGAGGAGGCAAGGCAAGAGGAAGAATACAAAAGATTGAGTGAAGCGCTGGCG
GAGGATGGGAACTACAGTGCCGTAGGGTTCACTTACGGCAGTGACTATTACGACCCGTCAGAGC
CCACAGAGGAGGAGGAGCCCTCGAAGCAGAGAGAAAAAAGTGAGGCTGAAAACTTGGAAGAAAA
TGAGGAGCCTTTCATCGCCCCTTTAGGACTAAGCGTCCCGTCTGACGTGGAGCTGCCACCAACA
GCCAAAATGCATGCCATCATCGAGCGCACAGCCAACTTCGTATGCAAGCAGGGAGCACAGTTCG
AGATCATGCTGAAGGCCAAGCAAGCACGGAACTCACAGTTCGACTTCCTGCGGTTTGATCACTA
CCTCAACCCCTACTACAAGTTCATCCAGAAAGCCATGAAGGAAGGACGGTACACGGTGCTAGCT
GAGAGCAAGAGCGAGGAGAAGAAAAAGTCTGGGCCAACCTCCGACAATGAAGAGGAAGATGATG
AGGAAGATGGGAGTTACCTGCACCCGTCTCTCTTTGCTTCCAAGAAGAGCAGCCGCCTGGAAGA
GCTGATGAAGCCCTTGAAGGTGGTAGACCCGGATCACCCTCTAGCAGCCCTTGTCCGGAAAGCA
CAGGCTGACAGCTCAGCCCCGGCCCCACCCACTGCAGATGGCACTCCTGCTCAGCCCTCCCAGG
TGGAGTACACGGCAGACTCAACCGTGGCAGCCATGTACTACAGCTACTACATGCTGCCAGATGG
CACCTACTGCCTGGCACCACCCCCACCCGGGATCGATGTGGCTACTTACTACAGCACCCTTCCT
GCTGGGGTGACTGTGTCCAGCTCACCTGGTGTGACCACGACTGTACCACCACCTCCTGGGACCA
CACCTCCTCCACCCCCAACCACAGCTGAGTCAAGCAGCGGGGTTACCTCCACAACCACCACCAC
AAGTGCGCTTGCTCCCGTGGCCATCATACCCCCGCCCCCTGACATCCAGCCTGTGATTGACAAG
CTGGCAGAGTACGTCGCCAGAAACGGCCTTAAATTTGAGACCAGTGTTCGAGCCAAGAACGATC
AGAGATTTGAATTCCTTCAACCCTGGCACCAGTACAACGCCTACTACGAGTTTAAGAAGCAGTT
CTTCCTGCAGAAGGAAGGAGGCGGTAGCACACAGGCAGCATCAACAGCTGAAGAGGCTCCCACA
GAAACCGCTGTTGAAGAGTCAAGTGAAGCTGGAGAGGACGGCGCTCCTGAGGGTATGGCAGAGA
CTGGGGGAAGAGGCAGCGGGAAGAAGGAGGCTGGGTCCAGCAAGAGCACCGTGGACGGGAAGCT
GGTAAAAGCTTCTTTTGCTCCAATAAGCTTTGCCATCAAAGCCAAAGAAAATGACCTACTTCCC
CTGGAAAAAAACCGCGTCAAGCTGGACGATGATAGTGAGGAAGATGAGGAAAGCAGGGAGTGCC
AGGAAAGCACAAGCAGTGTGGCCAACCCCAGCCCAGCCGCAGCCCCTCCCTCTGCAGTGGTGGA
GGAGAAGAAACCGCAGCTTACCCAAGAGGAGCTCGAAGCTAAGCAAGCAAAACAAAAGCTGGAG
GACCGCCTTGCTGCTGCCGCCCGGGAAAAGCTAGCTCAGGCGTCCAAGGAGTCGAAGGAGAAGC
AGCTTCAGGCTGAACGGAAGAGGAAAGCTGCTTTGTTTCTGCAGACCTTAAAAAACCCTCTTCC
AGATGCAGAAGTTGGAAAACTTGAGGAGAGCACTTTCGGAGTTGAGGAAACTGGTGTCATGCCC
TGTCCTCTGCTGGTTGGAGGTAGAACCCTGCCCATGTTGGAAGGGAAGCCTCCAGAAAGGCCTT
CAAGTAGATGCAGAGACCCACCAAGAGAAGAAGAAAGAGAGAAGAAGAAGAAGAAGCACAAAAA
ACGGTCTCGAACGAGGTCCCGCTCCCCCAAGTACCACTCGTCTTCCAAGCCCAGGTCTAGATCC
CACTCAAAAGCAAAGCACTCCCTGCCCAGTGCCTACCGGACAGTGCGGCGGTCGAGGCCCTCAG
CCTCCCCAGGGATCTTGAGTGTGGAGCCTTGTCCCAGCAGCTCGGCAGTGGCGGCAGCACAGCA
GGAGAGTTATCAGGCAGCCTCGGCCTCGAGCAGCTTTGACTCCTGGAGCTCTTTTGAGGGGAAA
CCTGGTAAACCGTCAAGGTCACGGTCTCGGTCCCCAAGAAGGAGAGCTCACTCTCCAGAGAGAC
GACGGGAAGACAGGAGTGTCCCCACAGCCTACCGGATGAGCGGCAGCCCTGGAGTCAGCAGGAA
ACGGACCCGTTCCAGAAGTCCCCATGAGAAGAAGAAGAAACGGCGCTCACGCTCTCGCACCAAG
GCCAAGGCCCGGTCGCAGTCAACTTCCCCGAGTAAACAGGCAGCACAGCGTCCCTCGGCCCACT
CAGCCCACTCGGCCAGCATCTCTCCTGTGGAGAGCCGAGGTTCCTCCCAGGAACGATCCAGGGG
GGTTTCTCAGGAAAAAGATGGCCAGATCTCCTCAGCAATCGTCTCCTCTGTGCAGAGCAAAATA
ACTCAGGATCTCATGGCCAAAGTAAGAGCAATGCTCGCAGCTTCAAAAAACCTGCAGACCAGCG
CGTCCTGAGAGGGCAGCCACGGAGCCAGCCCCTGGCGAGCAGCATGGCTGTGGCCCTGGCTGTG
GCTACAGGTGCTGGGCTACTGCTCAGAGCAGCCACAGTCCAGAAGTCAGAAGCTGAGCTGCAAG
CTCTGTGCCGACCTCCATGCGGCTCTCCAGGTTCTCCAGCCCAACTCCCTGGGTCAGTCGGTGG
CTTTTGTAAATTTTTGGTGACATTTTCTGTTTCAGATTTTTGACCAGCAGTCTCTTACCTGTAT
ATATGTAAATATATCATGTTTCTGTGAAAATGTATTATCAAATAAAATGGGAAACACCTTTTCT
AGCTAGCA

hide sequence

RefSeq Acc Id:

XM_006249270 ⟹ XP_006249332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	32,745,704 - 32,816,018 (-)	NCBI
mRatBN7.2	12	27,109,607 - 27,179,939 (-)	NCBI
Rnor_6.0	12	30,740,563 - 30,811,014 (-)	NCBI
Rnor_5.0	12	32,675,284 - 32,745,308 (-)	NCBI

Sequence:

show sequence

GTTGCGTTTCCTCCATTTTGTGGCTCGCTATGGCGGCTGTGTTGAAGTTACGAAGAGGATGCGG
CGCCTTTGACTGAGAGGGTAGGCCAGGCGAGGCATCAGGGACGTTGTTCGGCACAGCAGCAGAC
CGGCCCGGACGTCGTGGACGCTGTCATGTACGGTGCCGGCGGGGGCCGCGCCAAGGCGGAGAGG
AAAGGCGGAGTGAAGGAGGAGGCCGGGCCCGGTGGCACCGGCACTGGGGGCAACCGGGTGGAGC
TTCTGGTTTTCGGCTATGCCTGCAAGTTGTTCCGCGACGACGAGCGGGCTTTGGCCCAAGAACA
GGGACAGCACCTCATCCCCTGGATGGGGGACCACAAGATCCTCATCGACAGATACGACGGGCGT
GGTCACCTGCATGACCTCTCCGCCTACGATGCTGAGTACGCCACGTGGAACCGAGACTACCAGC
TGTCTGAAGAGGAGGCGCGGGTAGAGGCGCTGTGTGATGAAGAGAGGTATTTAGCCTTGCATAC
GGACTTGCTTGAGGAGGAGGCAAGGCAAGAGGAAGAATACAAAAGATTGAGTGAAGCGCTGGCG
GAGGATGGGAACTACAGTGCCGTAGGGTTCACTTACGGCAGTGACTATTACGACCCGTCAGAGC
CCACAGAGGAGGAGGAGCCCTCGAAGCAGAGAGAAAAAAGTGAGGCTGAAAACTTGGAAGAAAA
TGAGGAGCCTTTCATCGCCCCTTTAGGACTAAGCGTCCCGTCTGACGTGGAGCTGCCACCAACA
GCCAAAATGCATGCCATCATCGAGCGCACAGCCAACTTCGTATGCAAGCAGGGAGCACAGTTCG
AGATCATGCTGAAGGCCAAGCAAGCACGGAACTCACAGTTCGACTTCCTGCGGTTTGATCACTA
CCTCAACCCCTACTACAAGTTCATCCAGAAAGCCATGAAGGAAGGACGGTACACGGTGCTAGCT
GAGAGCAAGAGCGAGGAGAAGAAAAAGTCTGGGCCAACCTCCGACAATGAAGAGGAAGATGATG
AGGAAGATGGGAGTTACCTGCACCCGTCTCTCTTTGCTTCCAAGAAGAGCAGCCGCCTGGAAGA
GCTGATGAAGCCCTTGAAGGTGGTAGACCCGGATCACCCTCTAGCAGCCCTTGTCCGGAAAGCA
CAGGCTGACAGCTCAGCCCCGGCCCCACCCACTGCAGATGGCACTCCTGCTCAGCCCTCCCAGG
TGGAGTACACGGCAGACTCAACCGTGGCAGCCATGTACTACAGCTACTACATGCTGCCAGATGG
CACCTACTGCCTGGCACCACCCCCACCCGGGATCGATGTGGCTACTTACTACAGCACCCTTCCT
GCTGGGGTGACTGTGTCCAGCTCACCTGGTGTGACCACGACTGTACCACCACCTCCTGGGACCA
CACCTCCTCCACCCCCAACCACAGCTGAGTCAAGCAGCGGGGTTACCTCCACAACCACCACCAC
AAGTGCGCTTGCTCCCGTGGCCATCATACCCCCGCCCCCTGACATCCAGCCTGTGATTGACAAG
CTGGCAGAGTACGTCGCCAGAAACGGCCTTAAATTTGAGACCAGTGTTCGAGCCAAGAACGATC
AGAGATTTGAATTCCTTCAACCCTGGCACCAGTACAACGCCTACTACGAGTTTAAGAAGCAGTT
CTTCCTGCAGAAGGAAGGAGGCGGTAGCACACAGGCAGCATCAACAGCTGAAGAGGCTCCCACA
GAAACCGCTGTTGAAGAGTCAAGTGAAGCTGGAGAGGACGGCGCTCCTGAGGGTATGGCAGAGA
CTGGGGGAAGAGGCAGCGGGAAGAAGGAGGCTGGGTCCAGCAAGAGCACCGTGGACGGGAAGCT
GGTAAAAGCTTCTTTTGCTCCAATAAGCTTTGCCATCAAAGCCAAAGAAAATGACCTACTTCCC
CTGGAAAAAAACCGCGTCAAGCTGGACGATGATAGTGAGGAAGATGAGGAAAGCAGGGAGTGCC
AGGAAAGCACAAGCAGTGTGGCCAACCCCAGCCCAGCCGCAGCCCCTCCCTCTGCAGTGGTGGA
GGAGAAGAAACCGCAGCTTACCCAAGAGGAGCTCGAAGCTAAGCAAGCAAAACAAAAGCTGGAG
GACCGCCTTGCTGCTGCCGCCCGGGAAAAGCTAGCTCAGGCGTCCAAGGAGTCGAAGGAGAAGC
AGCTTCAGGCTGAACGGAAGAGGAAAGCTGCTTTGTTTCTGCAGACCTTAAAAAACCCTCTTCC
AGATGCAGAAGTTGGAAAACTTGAGGAGAGCACTTTCGGAGTTGAGGAAACTGGTGTCATGCCC
TGTCCTCTGCTGGTTGGAGGTAGAACCCTGCCCATGTTGGAAGGGAAGCCTCCAGAAAGGCCTT
CAAGTAGATGCAGAGACCCACCAAGAGAAGAAGAAAGAGAGAAGAAGAAGAAGAAGCACAAAAA
ACGGTCTCGAACGAGGTCCCGCTCCCCCAAGTACCACTCGTCTTCCAAGCCCAGGTCTAGATCC
CACTCAAAAGCAAAGCACTCCCTGCCCAGTGCCTACCGGACAGTGCGGCGGTCGAGGTCACGGT
CTCGGTCCCCAAGAAGGAGAGCTCACTCTCCAGAGAGACGACGGGAAGACAGGAGTGTCCCCAC
AGCCTACCGGATGAGCGGCAGCCCTGGAGTCAGCAGGAAACGGACCCGTTCCAGTCCCTGCGTG
TGCCCTGACAAGCACGTCCCTTTCAGAAGTCCCCATGAGAAGAAGAAGAAACGGCGCTCACGCT
CTCGCACCAAGGCCAAGGCCCGGTCGCAGTCAACTTCCCCGAGTAAACAGGCAGCACAGCGTCC
CTCGGCCCACTCAGCCCACTCGGCCAGCATCTCTCCTGTGGAGAGCCGAGGTTCCTCCCAGGAA
CGATCCAGGGGGGTTTCTCAGGAAAAAGATGGCCAGATCTCCTCAGCAATCGTCTCCTCTGTGC
AGAGCAAAATAACTCAGGATCTCATGGCCAAAGTAAGAGCAATGCTCGCAGCTTCAAAAAACCT
GCAGACCAGCGCGTCCTGAGAGGGCAGCCACGGAGCCAGCCCCTGGCGAGCAGCATGGCTGTGG
CCCTGGCTGTGGCTACAGGTGCTGGGCTACTGCTCAGAGCAGCCACAGTCCAGAAGTCAGAAGC
TGAGCTGCAAGCTCTGTGCCGACCTCCATGCGGCTCTCCAGGTTCTCCAGCCCAACTCCCTGGG
TCAGTCGGTGGCTTTTGTAAATTTTTGGTGACATTTTCTGTTTCAGATTTTTGACCAGCAGTCT
CTTACCTGTATATATGTAAATATATCATGTTTCTGTGAAAATGTATTATCAAATAAAATGGGAA
ACACCTTTTCTAGCTAGCA

hide sequence

RefSeq Acc Id:

XM_006249271 ⟹ XP_006249333

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	32,745,704 - 32,816,025 (-)	NCBI
mRatBN7.2	12	27,109,607 - 27,179,938 (-)	NCBI
Rnor_6.0	12	30,740,563 - 30,811,014 (-)	NCBI
Rnor_5.0	12	32,675,284 - 32,745,308 (-)	NCBI

Sequence:

show sequence

GTTGCGTTTCCTCCATTTTGTGGCTCGCTATGGCGGCTGTGTTGAAGTTACGAAGAGGATGCGG
CGCCTTTGACTGAGAGGGTAGGCCAGGCGAGGCATCAGGGACGTTGTTCGGCACAGCAGCAGAC
CGGCCCGGACGTCGTGGACGCTGTCATGTACGGTGCCGGCGGGGGCCGCGCCAAGGCGGAGAGG
AAAGGCGGAGTGAAGGAGGAGGCCGGGCCCGGTGGCACCGGCACTGGGGGCAACCGGGTGGAGC
TTCTGGTTTTCGGCTATGCCTGCAAGTTGTTCCGCGACGACGAGCGGGCTTTGGCCCAAGAACA
GGGACAGCACCTCATCCCCTGGATGGGGGACCACAAGATCCTCATCGACAGATACGACGGGCGT
GGTCACCTGCATGACCTCTCCGCCTACGATGCTGAGTACGCCACGTGGAACCGAGACTACCAGC
TGTCTGAAGAGGAGGCGCGGGTAGAGGCGCTGTGTGATGAAGAGAGGTATTTAGCCTTGCATAC
GGACTTGCTTGAGGAGGAGGCAAGGCAAGAGGAAGAATACAAAAGATTGAGTGAAGCGCTGGCG
GAGGATGGGAACTACAGTGCCGTAGGGTTCACTTACGGCAGTGACTATTACGACCCGTCAGAGC
CCACAGAGGAGGAGGAGCCCTCGAAGCAGAGAGAAAAAAGTGAGGCTGAAAACTTGGAAGAAAA
TGAGGAGCCTTTCATCGCCCCTTTAGGACTAAGCGTCCCGTCTGACGTGGAGCTGCCACCAACA
GCCAAAATGCATGCCATCATCGAGCGCACAGCCAACTTCGTATGCAAGCAGGGAGCACAGTTCG
AGATCATGCTGAAGGCCAAGCAAGCACGGAACTCACAGTTCGACTTCCTGCGGTTTGATCACTA
CCTCAACCCCTACTACAAGTTCATCCAGAAAGCCATGAAGGAAGGACGGTACACGGTGCTAGCT
GAGAGCAAGAGCGAGGAGAAGAAAAAGTCTGGGCCAACCTCCGACAATGAAGAGGAAGATGATG
AGGAAGATGGGAGTTACCTGCACCCGTCTCTCTTTGCTTCCAAGAAGAGCAGCCGCCTGGAAGA
GCTGATGAAGCCCTTGAAGGTGGTAGACCCGGATCACCCTCTAGCAGCCCTTGTCCGGAAAGCA
CAGGCTGACAGCTCAGCCCCGGCCCCACCCACTGCAGATGGCACTCCTGCTCAGCCCTCCCAGG
TGGAGTACACGGCAGACTCAACCGTGGCAGCCATGTACTACAGCTACTACATGCTGCCAGATGG
CACCTACTGCCTGGCACCACCCCCACCCGGGATCGATGTGGCTACTTACTACAGCACCCTTCCT
GCTGGGGTGACTGTGTCCAGCTCACCTGGTGTGACCACGACTGTACCACCACCTCCTGGGACCA
CACCTCCTCCACCCCCAACCACAGCTGAGTCAAGCAGCGGGGTTACCTCCACAACCACCACCAC
AAGTGCGCTTGCTCCCGTGGCCATCATACCCCCGCCCCCTGACATCCAGCCTGTGATTGACAAG
CTGGCAGAGTACGTCGCCAGAAACGGCCTTAAATTTGAGACCAGTGTTCGAGCCAAGAACGATC
AGAGATTTGAATTCCTTCAACCCTGGCACCAGTACAACGCCTACTACGAGTTTAAGAAGCAGTT
CTTCCTGCAGAAGGAAGGAGGCGGTAGCACACAGGCAGCATCAACAGCTGAAGAGGCTCCCACA
GAAACCGCTGTTGAAGAGTCAAGTGAAGCTGGAGAGGACGGCGCTCCTGAGGGTATGGCAGAGA
CTGGGGGAAGAGGCAGCGGGAAGAAGGAGGCTGGGTCCAGCAAGAGCACCGTGGACGGGAAGCT
GGTAAAAGCTTCTTTTGCTCCAATAAGCTTTGCCATCAAAGCCAAAGAAAATGACCTACTTCCC
CTGGAAAAAAACCGCGTCAAGCTGGACGATGATAGTGAGGAAGATGAGGAAAGCAGGGAGTGCC
AGGAAAGCACAAGCAGTGTGGCCAACCCCAGCCCAGCCGCAGCCCCTCCCTCTGCAGTGGTGGA
GGAGAAGAAACCGCAGCTTACCCAAGAGGAGCTCGAAGCTAAGCAAGCAAAACAAAAGCTGGAG
GACCGCCTTGCTGCTGCCGCCCGGGAAAAGCTAGCTCAGGCGTCCAAGGAGTCGAAGGAGAAGC
AGCTTCAGGCTGAACGGAAGAGGAAAGCTGCTTTGTTTCTGCAGACCTTAAAAAACCCTCTTCC
AGATGCAGAAGTTGGAAAACTTGAGGAGAGCACTTTCGGAGTTGAGGAAACTGGTGTCATGCCC
TGTCCTCTGCTGGTTGGAGGTAGAACCCTGCCCATGTTGGAAGGGAAGCCTCCAGAAAGGCCTT
CAAGTAGATGCAGAGACCCACCAAGAGAAGAAGAAAGAGAGAAGAAGAAGAAGAAGCACAAAAA
ACGGTCTCGAACGAGGTCCCGCTCCCCCAAGTACCACTCGTCTTCCAAGCCCAGGTCTAGATCC
CACTCAAAAGCAAAGCACTCCCTGCCCAGTGCCTACCGGACAGTGCGGCGGTCGAGGTCACGGT
CTCGGTCCCCAAGAAGGAGAGCTCACTCTCCAGAGAGACGACGGGAAGACAGGAGTGTCCCCAC
AGCCTACCGGATGAGCGGCAGCCCTGGAGTCAGCAGGAAACGGACCCGTTCCAGAAGTCCCCAT
GAGAAGAAGAAGAAACGGCGCTCACGCTCTCGCACCAAGGCCAAGGCCCGGTCGCAGTCAACTT
CCCCGAGTAAACAGGCAGCACAGCGTCCCTCGGCCCACTCAGCCCACTCGGCCAGCATCTCTCC
TGTGGAGAGCCGAGGTTCCTCCCAGGAACGATCCAGGGGGGTTTCTCAGGAAAAAGATGGCCAG
ATCTCCTCAGCAATCGTCTCCTCTGTGCAGAGCAAAATAACTCAGGATCTCATGGCCAAAGTAA
GAGCAATGCTCGCAGCTTCAAAAAACCTGCAGACCAGCGCGTCCTGAGAGGGCAGCCACGGAGC
CAGCCCCTGGCGAGCAGCATGGCTGTGGCCCTGGCTGTGGCTACAGGTGCTGGGCTACTGCTCA
GAGCAGCCACAGTCCAGAAGTCAGAAGCTGAGCTGCAAGCTCTGTGCCGACCTCCATGCGGCTC
TCCAGGTTCTCCAGCCCAACTCCCTGGGTCAGTCGGTGGCTTTTGTAAATTTTTGGTGACATTT
TCTGTTTCAGATTTTTGACCAGCAGTCTCTTACCTGTATATATGTAAATATATCATGTTTCTGT
GAAAATGTATTATCAAATAAAATGGGAAACACCTTTTCTAGCTAGCA

hide sequence

RefSeq Acc Id:

XM_006249273 ⟹ XP_006249335

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	32,745,704 - 32,816,018 (-)	NCBI
mRatBN7.2	12	27,109,607 - 27,179,938 (-)	NCBI
Rnor_6.0	12	30,740,563 - 30,811,014 (-)	NCBI
Rnor_5.0	12	32,675,284 - 32,745,308 (-)	NCBI

Sequence:

show sequence

GTTGCGTTTCCTCCATTTTGTGGCTCGCTATGGCGGCTGTGTTGAAGTTACGAAGAGGATGCGG
CGCCTTTGACTGAGAGGGTAGGCCAGGCGAGGCATCAGGGACGTTGTTCGGCACAGCAGCAGAC
CGGCCCGGACGTCGTGGACGCTGTCATGTACGGTGCCGGCGGGGGCCGCGCCAAGGCGGAGAGG
AAAGGCGGAGTGAAGGAGGAGGCCGGGCCCGGTGGCACCGGCACTGGGGGCAACCGGGTGGAGC
TTCTGGTTTTCGGCTATGCCTGCAAGTTGTTCCGCGACGACGAGCGGGCTTTGGCCCAAGAACA
GGGACAGCACCTCATCCCCTGGATGGGGGACCACAAGATCCTCATCGACAGATACGACGGGCGT
GGTCACCTGCATGACCTCTCCGCCTACGATGCTGAGTACGCCACGTGGAACCGAGACTACCAGC
TGTCTGAAGAGGAGGCGCGGGTAGAGGCGCTGTGTGATGAAGAGAGGTATTTAGCCTTGCATAC
GGACTTGCTTGAGGAGGAGGCAAGGCAAGAGGAAGAATACAAAAGATTGAGTGAAGCGCTGGCG
GAGGATGGGAACTACAGTGCCGTAGGGTTCACTTACGGCAGTGACTATTACGACCCGTCAGAGC
CCACAGAGGAGGAGGAGCCCTCGAAGCAGAGAGAAAAAAGTGAGGCTGAAAACTTGGAAGAAAA
TGAGGAGCCTTTCATCGCCCCTTTAGGACTAAGCGTCCCGTCTGACGTGGAGCTGCCACCAACA
GCCAAAATGCATGCCATCATCGAGCGCACAGCCAACTTCGTATGCAAGCAGGGAGCACAGTTCG
AGATCATGCTGAAGGCCAAGCAAGCACGGAACTCACAGTTCGACTTCCTGCGGTTTGATCACTA
CCTCAACCCCTACTACAAGTTCATCCAGAAAGCCATGAAGGAAGGACGGTACACGGTGCTAGCT
GAGAGCAAGAGCGAGGAGAAGAAAAAGTCTGGGCCAACCTCCGACAATGAAGAGGAAGATGATG
AGGAAGATGGGAGTTACCTGCACCCGTCTCTCTTTGCTTCCAAGAAGAGCAGCCGCCTGGAAGA
GCTGATGAAGCCCTTGAAGGTGGTAGACCCGGATCACCCTCTAGCAGCCCTTGTCCGGAAAGCA
CAGGCTGACAGCTCAGCCCCGGCCCCACCCACTGCAGATGGCACTCCTGCTCAGCCCTCCCAGG
TGGAGTACACGGCAGACTCAACCGTGGCAGCCATGTACTACAGCTACTACATGCTGCCAGATGG
CACCTACTGCCTGGCACCACCCCCACCCGGGATCGATGTGGCTACTTACTACAGCACCCTTCCT
GCTGGGGTGACTGTGTCCAGCTCACCTGGTGTGACCACGACTGTACCACCACCTCCTGGGACCA
CACCTCCTCCACCCCCAACCACAGCTGAGTCAAGCAGCGGGGTTACCTCCACAACCACCACCAC
AAGTGCGCTTGCTCCCGTGGCCATCATACCCCCGCCCCCTGACATCCAGCCTGTGATTGACAAG
CTGGCAGAGTACGTCGCCAGAAACGGCCTTAAATTTGAGACCAGTGTTCGAGCCAAGAACGATC
AGAGATTTGAATTCCTTCAACCCTGGCACCAGTACAACGCCTACTACGAGTTTAAGAAGCAGTT
CTTCCTGCAGAAGGAAGGAGGCGGTAGCACACAGGCAGCATCAACAGCTGAAGAGGCTCCCACA
GAAACCGCTGTTGAAGAGTCAAGTGAAGCTGGAGAGGACGGCGCTCCTGAGGCTTCTTTTGCTC
CAATAAGCTTTGCCATCAAAGCCAAAGAAAATGACCTACTTCCCCTGGAAAAAAACCGCGTCAA
GCTGGACGATGATAGTGAGGAAGATGAGGAAAGCAGGGAGTGCCAGGAAAGCACAAGCAGTGTG
GCCAACCCCAGCCCAGCCGCAGCCCCTCCCTCTGCAGTGGTGGAGGAGAAGAAACCGCAGCTTA
CCCAAGAGGAGCTCGAAGCTAAGCAAGCAAAACAAAAGCTGGAGGACCGCCTTGCTGCTGCCGC
CCGGGAAAAGCTAGCTCAGGCGTCCAAGGAGTCGAAGGAGAAGCAGCTTCAGGCTGAACGGAAG
AGGAAAGCTGCTTTGTTTCTGCAGACCTTAAAAAACCCTCTTCCAGATGCAGAAGTTGGAAAAC
TTGAGGAGAGCACTTTCGGAGTTGAGGAAACTGGTGTCATGCCCTGTCCTCTGCTGGTTGGAGG
TAGAACCCTGCCCATGTTGGAAGGGAAGCCTCCAGAAAGGCCTTCAAGTAGATGCAGAGACCCA
CCAAGAGAAGAAGAAAGAGAGAAGAAGAAGAAGAAGCACAAAAAACGGTCTCGAACGAGGTCCC
GCTCCCCCAAGTACCACTCGTCTTCCAAGCCCAGGTCTAGATCCCACTCAAAAGCAAAGCACTC
CCTGCCCAGTGCCTACCGGACAGTGCGGCGGTCGAGGTCACGGTCTCGGTCCCCAAGAAGGAGA
GCTCACTCTCCAGAGAGACGACGGGAAGACAGGAGTGTCCCCACAGCCTACCGGATGAGCGGCA
GCCCTGGAGTCAGCAGGAAACGGACCCGTTCCAGAAGTCCCCATGAGAAGAAGAAGAAACGGCG
CTCACGCTCTCGCACCAAGGCCAAGGCCCGGTCGCAGTCAACTTCCCCGAGTAAACAGGCAGCA
CAGCGTCCCTCGGCCCACTCAGCCCACTCGGCCAGCATCTCTCCTGTGGAGAGCCGAGGTTCCT
CCCAGGAACGATCCAGGGGGGTTTCTCAGGAAAAAGATGGCCAGATCTCCTCAGCAATCGTCTC
CTCTGTGCAGAGCAAAATAACTCAGGATCTCATGGCCAAAGTAAGAGCAATGCTCGCAGCTTCA
AAAAACCTGCAGACCAGCGCGTCCTGAGAGGGCAGCCACGGAGCCAGCCCCTGGCGAGCAGCAT
GGCTGTGGCCCTGGCTGTGGCTACAGGTGCTGGGCTACTGCTCAGAGCAGCCACAGTCCAGAAG
TCAGAAGCTGAGCTGCAAGCTCTGTGCCGACCTCCATGCGGCTCTCCAGGTTCTCCAGCCCAAC
TCCCTGGGTCAGTCGGTGGCTTTTGTAAATTTTTGGTGACATTTTCTGTTTCAGATTTTTGACC
AGCAGTCTCTTACCTGTATATATGTAAATATATCATGTTTCTGTGAAAATGTATTATCAAATAA
AATGGGAAACACCTTTTCTAGCTAGCA

hide sequence

RefSeq Acc Id:

XM_008769196 ⟹ XP_008767418

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	32,745,704 - 32,816,018 (-)	NCBI
mRatBN7.2	12	27,109,607 - 27,179,940 (-)	NCBI
Rnor_6.0	12	30,740,563 - 30,811,014 (-)	NCBI

Sequence:

show sequence

GTTGCGTTTCCTCCATTTTGTGGCTCGCTATGGCGGCTGTGTTGAAGTTACGAAGAGGATGCGG
CGCCTTTGACTGAGAGGGTAGGCCAGGCGAGGCATCAGGGACGTTGTTCGGCACAGCAGCAGAC
CGGCCCGGACGTCGTGGACGCTGTCATGTACGGTGCCGGCGGGGGCCGCGCCAAGGCGGAGAGG
AAAGGCGGAGTGAAGGAGGAGGCCGGGCCCGGTGGCACCGGCACTGGGGGCAACCGGGTGGAGC
TTCTGGTTTTCGGCTATGCCTGCAAGTTGTTCCGCGACGACGAGCGGGCTTTGGCCCAAGAACA
GGGACAGCACCTCATCCCCTGGATGGGGGACCACAAGATCCTCATCGACAGATACGACGGGCGT
GGTCACCTGCATGACCTCTCCGCCTACGATGCTGAGTACGCCACGTGGAACCGAGACTACCAGC
TGTCTGAAGAGGAGGCGCGGGTAGAGGCGCTGTGTGATGAAGAGAGGTATTTAGCCTTGCATAC
GGACTTGCTTGAGGAGGAGGCAAGGCAAGAGGAAGAATACAAAAGATTGAGTGAAGCGCTGGCG
GAGGATGGGAACTACAGTGCCGTAGGGTTCACTTACGGCAGTGACTATTACGACCCGTCAGAGC
CCACAGAGGAGGAGGAGCCCTCGAAGCAGAGAGAAAAAAGTGAGGCTGAAAACTTGGAAGAAAA
TGAGGAGCCTTTCATCGCCCCTTTAGGACTAAGCGTCCCGTCTGACGTGGAGCTGCCACCAACA
GCCAAAATGCATGCCATCATCGAGCGCACAGCCAACTTCGTATGCAAGCAGGGAGCACAGTTCG
AGATCATGCTGAAGGCCAAGCAAGCACGGAACTCACAGTTCGACTTCCTGCGGTTTGATCACTA
CCTCAACCCCTACTACAAGTTCATCCAGAAAGCCATGAAGGAAGGACGGTACACGGTGCTAGCT
GAGAGCAAGAGCGAGGAGAAGAAAAAGTCTGGGCCAACCTCCGACAATGAAGAGGAAGATGATG
AGGAAGATGGGAGTTACCTGCACCCGTCTCTCTTTGCTTCCAAGAAGAGCAGCCGCCTGGAAGA
GCTGATGAAGCCCTTGAAGGTGGTAGACCCGGATCACCCTCTAGCAGCCCTTGTCCGGAAAGCA
CAGGCTGACAGCTCAGCCCCGGCCCCACCCACTGCAGATGGCACTCCTGCTCAGCCCTCCCAGG
TGGAGTACACGGCAGACTCAACCGTGGCAGCCATGTACTACAGCTACTACATGCTGCCAGATGG
CACCTACTGCCTGGCACCACCCCCACCCGGGATCGATGTGGCTACTTACTACAGCACCCTTCCT
GCTGGGGTGACTGTGTCCAGCTCACCTGGTGTGACCACGACTGTACCACCACCTCCTGGGACCA
CACCTCCTCCACCCCCAACCACAGCTGAGTCAAGCAGCGGGGTTACCTCCACAACCACCACCAC
AAGTGCGCTTGCTCCCGTGGCCATCATACCCCCGCCCCCTGACATCCAGCCTGTGATTGACAAG
CTGGCAGAGTACGTCGCCAGAAACGGCCTTAAATTTGAGACCAGTGTTCGAGCCAAGAACGATC
AGAGATTTGAATTCCTTCAACCCTGGCACCAGTACAACGCCTACTACGAGTTTAAGAAGCAGTT
CTTCCTGCAGAAGGAAGGAGGCGGTAGCACACAGGCAGCATCAACAGCTGAAGAGGCTCCCACA
GAAACCGCTGTTGAAGAGTCAAGTGAAGCTGGAGAGGACGGCGCTCCTGAGGGTATGGCAGAGA
CTGGGGGAAGAGGCAGCGGGAAGAAGGAGGCTGGGTCCAGCAAGAGCACCGTGGACGGGAAGCT
GGTAAAAGCTTCTTTTGCTCCAATAAGCTTTGCCATCAAAGCCAAAGAAAATGACCTACTTCCC
CTGGAAAAAAACCGCGTCAAGCTGGACGATGATAGTGAGGAAGATGAGGAAAGCAGGGAGTGCC
AGGAAAGCACAAGCAGTGTGGCCAACCCCAGCCCAGCCGCAGCCCCTCCCTCTGCAGTGGTGGA
GGAGAAGAAACCGCAGCTTACCCAAGAGGAGCTCGAAGCTAAGCAAGCAAAACAAAAGCTGGAG
GACCGCCTTGCTGCTGCCGCCCGGGAAAAGCTAGCTCAGGCGTCCAAGGAGTCGAAGGAGAAGC
AGCTTCAGGCTGAACGGAAGAGGAAAGCTGCTTTGTTTCTGCAGACCTTAAAAAACCCTCTTCC
AGATGCAGAAGTTGGAAAACTTGAGGAGAGCACTTTCGGAGTTGAGGAAACTGGTGTCATGCCC
TGTCCTCTGCTGGTTGGAGGTAGAACCCTGCCCATGTTGGAAGGGAAGCCTCCAGAAAGGCCTT
CAAGTAGATGCAGAGACCCACCAAGAGAAGAAGAAAGAGAGAAGAAGAAGAAGAAGCACAAAAA
ACGGTCTCGAACGAGGTCCCGCTCCCCCAAGTACCACTCGTCTTCCAAGCCCAGGTCTAGATCC
CACTCAAAAGCAAAGCACTCCCTGCCCAGTGCCTACCGGACAGTGCGGCGGTCGAGGCCCTCAG
CCTCCCCAGGGATCTTGAGTGTGGAGCCTTGTCCCAGCAGCTCGGCAGTGGCGGCAGCACAGCA
GGAGAGTTATCAGGCAGCCTCGGCCTCGAGCAGCTTTGACTCCTGGAGCTCTTTTGAGGGGAAA
CCTGGTAAACCGTCAAGGTCACGGTCTCGGTCCCCAAGAAGGAGAGCTCACTCTCCAGAGAGAC
GACGGGAAGACAGGAGTGTCCCCACAGCCTACCGGATGAGCGGCAGCCCTGGAGTCAGCAGGAA
ACGGACCCGTTCCAGTCCCTGCGTGTGCCCTGACAAGCACGTCCCTTTCAGAAGTCCCCATGAG
AAGAAGAAGAAACGGCGCTCACGCTCTCGCACCAAGGCCAAGGCCCGGTCGCAGTCAACTTCCC
CGAGTAAACAGGCAGCACAGCGTCCCTCGGCCCACTCAGCCCACTCGGCCAGCATCTCTCCTGT
GGAGAGCCGAGGTTCCTCCCAGGAACGATCCAGGGGGGTTTCTCAGGAAAAAGATGGCCAGATC
TCCTCAGCAATCGTCTCCTCTGTGCAGAGCAAAATAACTCAGGATCTCATGGCCAAAGTAAGAG
CAATGCTCGCAGCTTCAAAAAACCTGCAGACCAGCGCGTCCTGAGAGGGCAGCCACGGAGCCAG
CCCCTGGCGAGCAGCATGGCTGTGGCCCTGGCTGTGGCTACAGGTGCTGGGCTACTGCTCAGAG
CAGCCACAGTCCAGAAGTCAGAAGCTGAGCTGCAAGCTCTGTGCCGACCTCCATGCGGCTCTCC
AGGTTCTCCAGCCCAACTCCCTGGGTCAGTCGGTGGCTTTTGTAAATTTTTGGTGACATTTTCT
GTTTCAGATTTTTGACCAGCAGTCTCTTACCTGTATATATGTAAATATATCATGTTTCTGTGAA
AATGTATTATCAAATAAAATGGGAAACACCTTTTCTAGCTAGCA

hide sequence

RefSeq Acc Id:

XM_008769197 ⟹ XP_008767419

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	32,745,704 - 32,816,018 (-)	NCBI
mRatBN7.2	12	27,109,607 - 27,179,941 (-)	NCBI
Rnor_6.0	12	30,740,563 - 30,811,015 (-)	NCBI

Sequence:

show sequence

AGTTGCGTTTCCTCCATTTTGTGGCTCGCTATGGCGGCTGTGTTGAAGTTACGAAGAGGATGCG
GCGCCTTTGACTGAGAGGGTAGGCCAGGCGAGGCATCAGGGACGTTGTTCGGCACAGCAGCAGA
CCGGCCCGGACGTCGTGGACGCTGTCATGTACGGTGCCGGCGGGGGCCGCGCCAAGGCGGAGAG
GAAAGGCGGAGTGAAGGAGGAGGCCGGGCCCGGTGGCACCGGCACTGGGGGCAACCGGGTGGAG
CTTCTGGTTTTCGGCTATGCCTGCAAGTTGTTCCGCGACGACGAGCGGGCTTTGGCCCAAGAAC
AGGGACAGCACCTCATCCCCTGGATGGGGGACCACAAGATCCTCATCGACAGATACGACGGGCG
TGGTCACCTGCATGACCTCTCCGCCTACGATGCTGAGTACGCCACGTGGAACCGAGACTACCAG
CTGTCTGAAGAGGAGGCGCGGGTAGAGGCGCTGTGTGATGAAGAGAGGTATTTAGCCTTGCATA
CGGACTTGCTTGAGGAGGAGGCAAGGCAAGAGGAAGAATACAAAAGATTGAGTGAAGCGCTGGC
GGAGGATGGGAACTACAGTGCCGTAGGGTTCACTTACGGCAGTGACTATTACGACCCGTCAGAG
CCCACAGAGGAGGAGGAGCCCTCGAAGCAGAGAGAAAAAAGTGAGGCTGAAAACTTGGAAGAAA
ATGAGGAGCCTTTCATCGCCCCTTTAGGACTAAGCGTCCCGTCTGACGTGGAGCTGCCACCAAC
AGCCAAAATGCATGCCATCATCGAGCGCACAGCCAACTTCGTATGCAAGCAGGGAGCACAGTTC
GAGATCATGCTGAAGGCCAAGCAAGCACGGAACTCACAGTTCGACTTCCTGCGGTTTGATCACT
ACCTCAACCCCTACTACAAGTTCATCCAGAAAGCCATGAAGGAAGGACGGTACACGGTGCTAGC
TGAGAGCAAGAGCGAGGAGAAGAAAAAGTCTGGGCCAACCTCCGACAATGAAGAGGAAGATGAT
GAGGAAGATGGGAGTTACCTGCACCCGTCTCTCTTTGCTTCCAAGAAGAGCAGCCGCCTGGAAG
AGCTGATGAAGCCCTTGAAGGTGGTAGACCCGGATCACCCTCTAGCAGCCCTTGTCCGGAAAGC
ACAGGCTGACAGCTCAGCCCCGGCCCCACCCACTGCAGATGGCACTCCTGCTCAGCCCTCCCAG
GTGGAGTACACGGCAGACTCAACCGTGGCAGCCATGTACTACAGCTACTACATGCTGCCAGATG
GCACCTACTGCCTGGCACCACCCCCACCCGGGATCGATGTGGCTACTTACTACAGCACCCTTCC
TGCTGGGGTGACTGTGTCCAGCTCACCTGGTGTGACCACGACTGTACCACCACCTCCTGGGACC
ACACCTCCTCCACCCCCAACCACAGCTGAGTCAAGCAGCGGGGTTACCTCCACAACCACCACCA
CAAGTGCGCTTGCTCCCGTGGCCATCATACCCCCGCCCCCTGACATCCAGCCTGTGATTGACAA
GCTGGCAGAGTACGTCGCCAGAAACGGCCTTAAATTTGAGACCAGTGTTCGAGCCAAGAACGAT
CAGAGATTTGAATTCCTTCAACCCTGGCACCAGTACAACGCCTACTACGAGTTTAAGAAGCAGT
TCTTCCTGCAGAAGGAAGGAGGCGGTAGCACACAGGCAGCATCAACAGCTGAAGAGGCTCCCAC
AGAAACCGCTGTTGAAGAGTCAAGTGAAGCTGGAGAGGACGGCGCTCCTGAGGCTTCTTTTGCT
CCAATAAGCTTTGCCATCAAAGCCAAAGAAAATGACCTACTTCCCCTGGAAAAAAACCGCGTCA
AGCTGGACGATGATAGTGAGGAAGATGAGGAAAGCAGGGAGTGCCAGGAAAGCACAAGCAGTGT
GGCCAACCCCAGCCCAGCCGCAGCCCCTCCCTCTGCAGTGGTGGAGGAGAAGAAACCGCAGCTT
ACCCAAGAGGAGCTCGAAGCTAAGCAAGCAAAACAAAAGCTGGAGGACCGCCTTGCTGCTGCCG
CCCGGGAAAAGCTAGCTCAGGCGTCCAAGGAGTCGAAGGAGAAGCAGCTTCAGGCTGAACGGAA
GAGGAAAGCTGCTTTGTTTCTGCAGACCTTAAAAAACCCTCTTCCAGATGCAGAAGTTGGAAAA
CTTGAGGAGAGCACTTTCGGAGTTGAGGAAACTGGTGTCATGCCCTGTCCTCTGCTGGTTGGAG
GTAGAACCCTGCCCATGTTGGAAGGGAAGCCTCCAGAAAGGCCTTCAAGTAGATGCAGAGACCC
ACCAAGAGAAGAAGAAAGAGAGAAGAAGAAGAAGAAGCACAAAAAACGGTCTCGAACGAGGTCC
CGCTCCCCCAAGTACCACTCGTCTTCCAAGCCCAGGTCTAGATCCCACTCAAAAGCAAAGCACT
CCCTGCCCAGTGCCTACCGGACAGTGCGGCGGTCGAGGCCCTCAGCCTCCCCAGGGATCTTGAG
TGTGGAGCCTTGTCCCAGCAGCTCGGCAGTGGCGGCAGCACAGCAGGAGAGTTATCAGGCAGCC
TCGGCCTCGAGCAGCTTTGACTCCTGGAGCTCTTTTGAGGGGAAACCTGGTAAACCGTCAAGGT
CACGGTCTCGGTCCCCAAGAAGGAGAGCTCACTCTCCAGAGAGACGACGGGAAGACAGGAGTGT
CCCCACAGCCTACCGGATGAGCGGCAGCCCTGGAGTCAGCAGGAAACGGACCCGTTCCAGTCCC
TGCGTGTGCCCTGACAAGCACGTCCCTTTCAGAAGTCCCCATGAGAAGAAGAAGAAACGGCGCT
CACGCTCTCGCACCAAGGCCAAGGCCCGGTCGCAGTCAACTTCCCCGAGTAAACAGGCAGCACA
GCGTCCCTCGGCCCACTCAGCCCACTCGGCCAGCATCTCTCCTGTGGAGAGCCGAGGTTCCTCC
CAGGAACGATCCAGGGGGGTTTCTCAGGAAAAAGATGGCCAGATCTCCTCAGCAATCGTCTCCT
CTGTGCAGAGCAAAATAACTCAGGATCTCATGGCCAAAGTAAGAGCAATGCTCGCAGCTTCAAA
AAACCTGCAGACCAGCGCGTCCTGAGAGGGCAGCCACGGAGCCAGCCCCTGGCGAGCAGCATGG
CTGTGGCCCTGGCTGTGGCTACAGGTGCTGGGCTACTGCTCAGAGCAGCCACAGTCCAGAAGTC
AGAAGCTGAGCTGCAAGCTCTGTGCCGACCTCCATGCGGCTCTCCAGGTTCTCCAGCCCAACTC
CCTGGGTCAGTCGGTGGCTTTTGTAAATTTTTGGTGACATTTTCTGTTTCAGATTTTTGACCAG
CAGTCTCTTACCTGTATATATGTAAATATATCATGTTTCTGTGAAAATGTATTATCAAATAAAA
TGGGAAACACCTTTTCTAGCTAGCA

hide sequence

RefSeq Acc Id:

XM_039089425 ⟹ XP_038945353

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	32,745,704 - 32,816,030 (-)	NCBI
mRatBN7.2	12	27,109,607 - 27,179,940 (-)	NCBI

RefSeq Acc Id:

XM_039089426 ⟹ XP_038945354

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	32,745,704 - 32,816,030 (-)	NCBI
mRatBN7.2	12	27,109,607 - 27,179,937 (-)	NCBI

RefSeq Acc Id:

XM_039089427 ⟹ XP_038945355

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	32,745,704 - 32,800,775 (-)	NCBI
mRatBN7.2	12	27,109,607 - 27,164,682 (-)	NCBI

RefSeq Acc Id:

XM_063271297 ⟹ XP_063127367

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	32,747,286 - 32,816,018 (-)	NCBI

RefSeq Acc Id:

XM_063271298 ⟹ XP_063127368

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	32,747,323 - 32,816,018 (-)	NCBI

RefSeq Acc Id:

XM_063271299 ⟹ XP_063127369

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	32,745,704 - 32,816,030 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001030096	(Get FASTA)	NCBI Sequence Viewer
	NP_001387913	(Get FASTA)	NCBI Sequence Viewer
	XP_006249331	(Get FASTA)	NCBI Sequence Viewer
	XP_006249332	(Get FASTA)	NCBI Sequence Viewer
	XP_006249333	(Get FASTA)	NCBI Sequence Viewer
	XP_006249335	(Get FASTA)	NCBI Sequence Viewer
	XP_008767418	(Get FASTA)	NCBI Sequence Viewer
	XP_008767419	(Get FASTA)	NCBI Sequence Viewer
	XP_038945353	(Get FASTA)	NCBI Sequence Viewer
	XP_038945354	(Get FASTA)	NCBI Sequence Viewer
	XP_038945355	(Get FASTA)	NCBI Sequence Viewer
	XP_063127367	(Get FASTA)	NCBI Sequence Viewer
	XP_063127368	(Get FASTA)	NCBI Sequence Viewer
	XP_063127369	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91384	(Get FASTA)	NCBI Sequence Viewer
	AAI05869	(Get FASTA)	NCBI Sequence Viewer
	D3ZTQ1	(Get FASTA)	NCBI Sequence Viewer
	EDM13503	(Get FASTA)	NCBI Sequence Viewer
	EDM13504	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070951
	ENSRNOP00000076174
	ENSRNOP00000076174.2

RefSeq Acc Id:	NP_001030096 ⟸ NM_001034924
- Peptide Label:	isoform 2
- UniProtKB:	Q3KR71 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKREEEYKRLSEALAEDGNYSAVGFTYGSDYYDPSEPTEEEEPSKQREKSEAENLEENEEPFIA PLGLSVPSDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYK FIQKAMKEGRYTVLAESKSEEKKKSGPTSDNEEEDDEEDGSYLHPSLFASKKSSRLEELMKPLK VVDPDHPLAALVRKAQADSSAPAPPTADGTPAQPSQVEYTADSTVAAMYYSYYMLPDGTYCLAP PPPGIDVATYYSTLPAGVTVSSSPGVTTTVPPPPGTTPPPPPTTAESSSGVTSTTTTTSALAPV AIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEG GGSTQAASTAEEAPTETAVEESSEAGEDGAPEASFAPISFAIKAKENDLLPLEKNRVKLDDDSE EDEESRECQESTSSVANPSPAAAPPSAVVEEKKPQLTQEELEAKQAKQKLEDRLAAAAREKLAQ ASKESKEKQLQAERKRKAALFLQTLKNPLPDAEVGKLEESTFGVEETGVMPCPLLVGGRTLPML EGKPPERPSSRCRDPPREEEREKKKKKHKKRSRTRSRSPKYHSSSKPRSRSHSKAKHSLPSAYR TVRRSRSRSRSPRRRAHSPERRREDRSVPTAYRMSGSPGVSRKRTRSRSPHEKKKKRRSRSRTK AKARSQSTSPSKQAAQRPSAHSAHSASISPVESRGSSQERSRGVSQEKDGQISSAIVSSVQSKI TQDLMAKVRAMLAASKNLQTSAS hide sequence

RefSeq Acc Id:	XP_006249335 ⟸ XM_006249273
- Peptide Label:	isoform X6
- UniProtKB:	A0A1W2Q681 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYGAGGGRAKAERKGGVKEEAGPGGTGTGGNRVELLVFGYACKLFRDDERALAQEQGQHLIPWM GDHKILIDRYDGRGHLHDLSAYDAEYATWNRDYQLSEEEARVEALCDEERYLALHTDLLEEEAR QEEEYKRLSEALAEDGNYSAVGFTYGSDYYDPSEPTEEEEPSKQREKSEAENLEENEEPFIAPL GLSVPSDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFI QKAMKEGRYTVLAESKSEEKKKSGPTSDNEEEDDEEDGSYLHPSLFASKKSSRLEELMKPLKVV DPDHPLAALVRKAQADSSAPAPPTADGTPAQPSQVEYTADSTVAAMYYSYYMLPDGTYCLAPPP PGIDVATYYSTLPAGVTVSSSPGVTTTVPPPPGTTPPPPPTTAESSSGVTSTTTTTSALAPVAI IPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGG STQAASTAEEAPTETAVEESSEAGEDGAPEASFAPISFAIKAKENDLLPLEKNRVKLDDDSEED EESRECQESTSSVANPSPAAAPPSAVVEEKKPQLTQEELEAKQAKQKLEDRLAAAAREKLAQAS KESKEKQLQAERKRKAALFLQTLKNPLPDAEVGKLEESTFGVEETGVMPCPLLVGGRTLPMLEG KPPERPSSRCRDPPREEEREKKKKKHKKRSRTRSRSPKYHSSSKPRSRSHSKAKHSLPSAYRTV RRSRSRSRSPRRRAHSPERRREDRSVPTAYRMSGSPGVSRKRTRSRSPHEKKKKRRSRSRTKAK ARSQSTSPSKQAAQRPSAHSAHSASISPVESRGSSQERSRGVSQEKDGQISSAIVSSVQSKITQ DLMAKVRAMLAASKNLQTSAS hide sequence

RefSeq Acc Id:

XP_006249332 ⟸ XM_006249270

- Peptide Label:

isoform X4

- Sequence:

show sequence

MYGAGGGRAKAERKGGVKEEAGPGGTGTGGNRVELLVFGYACKLFRDDERALAQEQGQHLIPWM
GDHKILIDRYDGRGHLHDLSAYDAEYATWNRDYQLSEEEARVEALCDEERYLALHTDLLEEEAR
QEEEYKRLSEALAEDGNYSAVGFTYGSDYYDPSEPTEEEEPSKQREKSEAENLEENEEPFIAPL
GLSVPSDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFI
QKAMKEGRYTVLAESKSEEKKKSGPTSDNEEEDDEEDGSYLHPSLFASKKSSRLEELMKPLKVV
DPDHPLAALVRKAQADSSAPAPPTADGTPAQPSQVEYTADSTVAAMYYSYYMLPDGTYCLAPPP
PGIDVATYYSTLPAGVTVSSSPGVTTTVPPPPGTTPPPPPTTAESSSGVTSTTTTTSALAPVAI
IPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGG
STQAASTAEEAPTETAVEESSEAGEDGAPEGMAETGGRGSGKKEAGSSKSTVDGKLVKASFAPI
SFAIKAKENDLLPLEKNRVKLDDDSEEDEESRECQESTSSVANPSPAAAPPSAVVEEKKPQLTQ
EELEAKQAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLPDAEVGKLE
ESTFGVEETGVMPCPLLVGGRTLPMLEGKPPERPSSRCRDPPREEEREKKKKKHKKRSRTRSRS
PKYHSSSKPRSRSHSKAKHSLPSAYRTVRRSRSRSRSPRRRAHSPERRREDRSVPTAYRMSGSP
GVSRKRTRSSPCVCPDKHVPFRSPHEKKKKRRSRSRTKAKARSQSTSPSKQAAQRPSAHSAHSA
SISPVESRGSSQERSRGVSQEKDGQISSAIVSSVQSKITQDLMAKVRAMLAASKNLQTSAS

hide sequence

RefSeq Acc Id:	XP_006249331 ⟸ XM_006249269
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JZ87 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYGAGGGRAKAERKGGVKEEAGPGGTGTGGNRVELLVFGYACKLFRDDERALAQEQGQHLIPWM GDHKILIDRYDGRGHLHDLSAYDAEYATWNRDYQLSEEEARVEALCDEERYLALHTDLLEEEAR QEEEYKRLSEALAEDGNYSAVGFTYGSDYYDPSEPTEEEEPSKQREKSEAENLEENEEPFIAPL GLSVPSDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFI QKAMKEGRYTVLAESKSEEKKKSGPTSDNEEEDDEEDGSYLHPSLFASKKSSRLEELMKPLKVV DPDHPLAALVRKAQADSSAPAPPTADGTPAQPSQVEYTADSTVAAMYYSYYMLPDGTYCLAPPP PGIDVATYYSTLPAGVTVSSSPGVTTTVPPPPGTTPPPPPTTAESSSGVTSTTTTTSALAPVAI IPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGG STQAASTAEEAPTETAVEESSEAGEDGAPEGMAETGGRGSGKKEAGSSKSTVDGKLVKASFAPI SFAIKAKENDLLPLEKNRVKLDDDSEEDEESRECQESTSSVANPSPAAAPPSAVVEEKKPQLTQ EELEAKQAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLPDAEVGKLE ESTFGVEETGVMPCPLLVGGRTLPMLEGKPPERPSSRCRDPPREEEREKKKKKHKKRSRTRSRS PKYHSSSKPRSRSHSKAKHSLPSAYRTVRRSRPSASPGILSVEPCPSSSAVAAAQQESYQAASA SSSFDSWSSFEGKPGKPSRSRSRSPRRRAHSPERRREDRSVPTAYRMSGSPGVSRKRTRSRSPH EKKKKRRSRSRTKAKARSQSTSPSKQAAQRPSAHSAHSASISPVESRGSSQERSRGVSQEKDGQ ISSAIVSSVQSKITQDLMAKVRAMLAASKNLQTSAS hide sequence

RefSeq Acc Id:	XP_006249333 ⟸ XM_006249271
- Peptide Label:	isoform X5
- UniProtKB:	Q5BJQ4 (UniProtKB/Swiss-Prot), D3ZTQ1 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MYGAGGGRAKAERKGGVKEEAGPGGTGTGGNRVELLVFGYACKLFRDDERALAQEQGQHLIPWM GDHKILIDRYDGRGHLHDLSAYDAEYATWNRDYQLSEEEARVEALCDEERYLALHTDLLEEEAR QEEEYKRLSEALAEDGNYSAVGFTYGSDYYDPSEPTEEEEPSKQREKSEAENLEENEEPFIAPL GLSVPSDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFI QKAMKEGRYTVLAESKSEEKKKSGPTSDNEEEDDEEDGSYLHPSLFASKKSSRLEELMKPLKVV DPDHPLAALVRKAQADSSAPAPPTADGTPAQPSQVEYTADSTVAAMYYSYYMLPDGTYCLAPPP PGIDVATYYSTLPAGVTVSSSPGVTTTVPPPPGTTPPPPPTTAESSSGVTSTTTTTSALAPVAI IPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGG STQAASTAEEAPTETAVEESSEAGEDGAPEGMAETGGRGSGKKEAGSSKSTVDGKLVKASFAPI SFAIKAKENDLLPLEKNRVKLDDDSEEDEESRECQESTSSVANPSPAAAPPSAVVEEKKPQLTQ EELEAKQAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLPDAEVGKLE ESTFGVEETGVMPCPLLVGGRTLPMLEGKPPERPSSRCRDPPREEEREKKKKKHKKRSRTRSRS PKYHSSSKPRSRSHSKAKHSLPSAYRTVRRSRSRSRSPRRRAHSPERRREDRSVPTAYRMSGSP GVSRKRTRSRSPHEKKKKRRSRSRTKAKARSQSTSPSKQAAQRPSAHSAHSASISPVESRGSSQ ERSRGVSQEKDGQISSAIVSSVQSKITQDLMAKVRAMLAASKNLQTSAS hide sequence

RefSeq Acc Id:

XP_008767419 ⟸ XM_008769197

- Peptide Label:

isoform X3

- Sequence:

show sequence

MYGAGGGRAKAERKGGVKEEAGPGGTGTGGNRVELLVFGYACKLFRDDERALAQEQGQHLIPWM
GDHKILIDRYDGRGHLHDLSAYDAEYATWNRDYQLSEEEARVEALCDEERYLALHTDLLEEEAR
QEEEYKRLSEALAEDGNYSAVGFTYGSDYYDPSEPTEEEEPSKQREKSEAENLEENEEPFIAPL
GLSVPSDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFI
QKAMKEGRYTVLAESKSEEKKKSGPTSDNEEEDDEEDGSYLHPSLFASKKSSRLEELMKPLKVV
DPDHPLAALVRKAQADSSAPAPPTADGTPAQPSQVEYTADSTVAAMYYSYYMLPDGTYCLAPPP
PGIDVATYYSTLPAGVTVSSSPGVTTTVPPPPGTTPPPPPTTAESSSGVTSTTTTTSALAPVAI
IPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGG
STQAASTAEEAPTETAVEESSEAGEDGAPEASFAPISFAIKAKENDLLPLEKNRVKLDDDSEED
EESRECQESTSSVANPSPAAAPPSAVVEEKKPQLTQEELEAKQAKQKLEDRLAAAAREKLAQAS
KESKEKQLQAERKRKAALFLQTLKNPLPDAEVGKLEESTFGVEETGVMPCPLLVGGRTLPMLEG
KPPERPSSRCRDPPREEEREKKKKKHKKRSRTRSRSPKYHSSSKPRSRSHSKAKHSLPSAYRTV
RRSRPSASPGILSVEPCPSSSAVAAAQQESYQAASASSSFDSWSSFEGKPGKPSRSRSRSPRRR
AHSPERRREDRSVPTAYRMSGSPGVSRKRTRSSPCVCPDKHVPFRSPHEKKKKRRSRSRTKAKA
RSQSTSPSKQAAQRPSAHSAHSASISPVESRGSSQERSRGVSQEKDGQISSAIVSSVQSKITQD
LMAKVRAMLAASKNLQTSAS

hide sequence

RefSeq Acc Id:

XP_008767418 ⟸ XM_008769196

- Peptide Label:

isoform X1

- Sequence:

show sequence

MYGAGGGRAKAERKGGVKEEAGPGGTGTGGNRVELLVFGYACKLFRDDERALAQEQGQHLIPWM
GDHKILIDRYDGRGHLHDLSAYDAEYATWNRDYQLSEEEARVEALCDEERYLALHTDLLEEEAR
QEEEYKRLSEALAEDGNYSAVGFTYGSDYYDPSEPTEEEEPSKQREKSEAENLEENEEPFIAPL
GLSVPSDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFI
QKAMKEGRYTVLAESKSEEKKKSGPTSDNEEEDDEEDGSYLHPSLFASKKSSRLEELMKPLKVV
DPDHPLAALVRKAQADSSAPAPPTADGTPAQPSQVEYTADSTVAAMYYSYYMLPDGTYCLAPPP
PGIDVATYYSTLPAGVTVSSSPGVTTTVPPPPGTTPPPPPTTAESSSGVTSTTTTTSALAPVAI
IPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGG
STQAASTAEEAPTETAVEESSEAGEDGAPEGMAETGGRGSGKKEAGSSKSTVDGKLVKASFAPI
SFAIKAKENDLLPLEKNRVKLDDDSEEDEESRECQESTSSVANPSPAAAPPSAVVEEKKPQLTQ
EELEAKQAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLPDAEVGKLE
ESTFGVEETGVMPCPLLVGGRTLPMLEGKPPERPSSRCRDPPREEEREKKKKKHKKRSRTRSRS
PKYHSSSKPRSRSHSKAKHSLPSAYRTVRRSRPSASPGILSVEPCPSSSAVAAAQQESYQAASA
SSSFDSWSSFEGKPGKPSRSRSRSPRRRAHSPERRREDRSVPTAYRMSGSPGVSRKRTRSSPCV
CPDKHVPFRSPHEKKKKRRSRSRTKAKARSQSTSPSKQAAQRPSAHSAHSASISPVESRGSSQE
RSRGVSQEKDGQISSAIVSSVQSKITQDLMAKVRAMLAASKNLQTSAS

hide sequence

Ensembl Acc Id:

ENSRNOP00000070951 ⟸ ENSRNOT00000077977

Ensembl Acc Id:

ENSRNOP00000076147 ⟸ ENSRNOT00000093734

Ensembl Acc Id:

ENSRNOP00000076174 ⟸ ENSRNOT00000093237

Ensembl Acc Id:

ENSRNOP00000001235 ⟸ ENSRNOT00000001235

RefSeq Acc Id:	XP_038945353 ⟸ XM_039089425
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038945354 ⟸ XM_039089426
- Peptide Label:	isoform X9
- UniProtKB:	A6J0R5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945355 ⟸ XM_039089427
- Peptide Label:	isoform X11

RefSeq Acc Id:	NP_001387913 ⟸ NM_001400984
- Peptide Label:	isoform 1

RefSeq Acc Id:	XP_063127369 ⟸ XM_063271299
- Peptide Label:	isoform X10
- UniProtKB:	Q3KR71 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127367 ⟸ XM_063271297
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063127368 ⟸ XM_063271298
- Peptide Label:	isoform X8

Protein Domains

SURP motif

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZTQ1-F1-model_v2	AlphaFold	D3ZTQ1	1-945	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698592

Promoter ID:

EPDNEW_R9117

Type:

multiple initiation site

Name:

Sfswap_1

Description:

splicing factor SWAP

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	30,810,995 - 30,811,055	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305004	AgrOrtholog
BioCyc Gene	G2FUF-19484	BioCyc
Ensembl Genes	ENSRNOG00000000931	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000077977	ENTREZGENE
	ENSRNOT00000093237	ENTREZGENE
	ENSRNOT00000093237.2	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.10.790	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7321112	IMAGE-MGC_LOAD
	IMAGE:7462407	IMAGE-MGC_LOAD
InterPro	Surp	UniProtKB/Swiss-Prot
	SWAP	UniProtKB/Swiss-Prot
	SWAP/Surp_sf	UniProtKB/Swiss-Prot
	SWAP_N_domain	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109465	IMAGE-MGC_LOAD
	MGC:125102	IMAGE-MGC_LOAD
NCBI Gene	304431	ENTREZGENE
PANTHER	PTHR13161	UniProtKB/Swiss-Prot
	SPLICING FACTOR, SUPPRESSOR OF WHITE-APRICOT HOMOLOG	UniProtKB/Swiss-Prot
Pfam	DRY_EERY	UniProtKB/Swiss-Prot
	Surp	UniProtKB/Swiss-Prot
PhenoGen	Sfswap	PhenoGen
PROSITE	SURP	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000000931	RatGTEx
SMART	DRY_EERY	UniProtKB/Swiss-Prot
	SWAP	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF109905	UniProtKB/Swiss-Prot
UniProt	A0A0G2JZ87	ENTREZGENE, UniProtKB/TrEMBL
	A0A1W2Q681	ENTREZGENE, UniProtKB/TrEMBL
	A6J0R5	ENTREZGENE, UniProtKB/TrEMBL
	D3ZTQ1	ENTREZGENE
	Q3KR71	ENTREZGENE, UniProtKB/TrEMBL
	Q5BJQ4	ENTREZGENE
	SFSWA_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q5BJQ4	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-09-28	Sfswap	splicing factor SWAP	Sfswap	splicing factor SWAP homolog	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-05-11	Sfswap	splicing factor SWAP homolog	Sfswap	splicing factor, suppressor of white-apricot homolog	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-03-16	Sfswap	splicing factor, suppressor of white-apricot homolog	Sfswap	splicing factor, suppressor of white-apricot family	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-04-23	Sfswap	splicing factor, suppressor of white-apricot family	Sfswap	splicing factor, suppressor of white-apricot homolog (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-08-01	Sfswap	splicing factor, suppressor of white-apricot homolog (Drosophila)	Sfrs8	splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-07-22	Sfrs8	splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila)	Srsf8	serine/arginine-rich splicing factor 8	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-07-13	Srsf8	serine/arginine-rich splicing factor 8	Sfrs8	splicing factor, arginine/serine-rich 8	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Sfrs8	splicing factor, arginine/serine-rich 8	Sfrs8	splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Sfrs8	splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila)	Sfrs8_predicted	splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Sfrs8_predicted	splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD