Thoc5 (THO complex subunit 5) - Rat Genome Database

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Gene: Thoc5 (THO complex subunit 5) Rattus norvegicus
Analyze
Symbol: Thoc5
Name: THO complex subunit 5
RGD ID: 1304991
Description: Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus; monocyte differentiation; and primitive hemopoiesis. Predicted to act upstream of or within several processes, including negative regulation of macrophage differentiation; regulation of mRNA export from nucleus; and regulation of stem cell division. Predicted to be located in chromosome, telomeric region and nucleoplasm. Predicted to be part of THO complex part of transcription export complex. Human ortholog(s) of this gene implicated in breast carcinoma. Orthologous to human THOC5 (THO complex subunit 5); PARTICIPATES IN NXF1-NXT1 export pathway; RNA transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fmip; Fms interacting protein; fms-interacting protein; LOC360972; THO complex 5; THO complex subunit 5 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,982,302 - 84,016,193 (+)NCBIGRCr8
mRatBN7.21479,758,805 - 79,792,718 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1479,758,917 - 79,792,718 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1484,189,540 - 84,223,312 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01485,429,616 - 85,463,386 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01481,879,283 - 81,913,206 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,138,219 - 85,171,729 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,142,279 - 85,171,726 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01485,816,054 - 85,849,564 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41485,561,381 - 85,612,915 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11485,580,525 - 85,607,648 (+)NCBI
Celera1478,667,519 - 78,697,308 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function
mRNA binding  (IBA,ISO)
protein binding  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. mRNA export and the TREX complex. Katahira J Biochim Biophys Acta. 2012 Jun;1819(6):507-13. doi: 10.1016/j.bbagrm.2011.12.001. Epub 2011 Dec 8.
3. THOC5/FMIP, an mRNA export TREX complex protein, is essential for hematopoietic primitive cell survival in vivo. Mancini A, etal., BMC Biol. 2010 Jan 5;8:1.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. The consensus coding sequences of human breast and colorectal cancers. Sjoblom T, etal., Science. 2006 Oct 13;314(5797):268-74. Epub 2006 Sep 7.
Additional References at PubMed
PMID:10597251   PMID:12477932   PMID:15221008   PMID:15833825   PMID:15998806   PMID:17190602   PMID:18974867   PMID:19015024   PMID:19059247   PMID:22144908   PMID:24270157   PMID:24315442  


Genomics

Comparative Map Data
Thoc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,982,302 - 84,016,193 (+)NCBIGRCr8
mRatBN7.21479,758,805 - 79,792,718 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1479,758,917 - 79,792,718 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1484,189,540 - 84,223,312 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01485,429,616 - 85,463,386 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01481,879,283 - 81,913,206 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,138,219 - 85,171,729 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,142,279 - 85,171,726 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01485,816,054 - 85,849,564 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41485,561,381 - 85,612,915 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11485,580,525 - 85,607,648 (+)NCBI
Celera1478,667,519 - 78,697,308 (+)NCBICelera
Cytogenetic Map14q21NCBI
THOC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,505,879 - 29,553,757 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,505,879 - 29,555,216 (-)EnsemblGRCh38hg38GRCh38
GRCh372229,901,868 - 29,949,746 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362228,234,156 - 28,279,736 (-)NCBINCBI36Build 36hg18NCBI36
Celera2213,703,995 - 13,749,471 (-)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2212,867,987 - 12,913,507 (-)NCBIHuRef
CHM1_12229,863,485 - 29,909,025 (-)NCBICHM1_1
T2T-CHM13v2.02229,969,253 - 30,017,117 (-)NCBIT2T-CHM13v2.0
Thoc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,845,339 - 4,878,867 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,845,320 - 4,878,867 (+)EnsemblGRCm39 Ensembl
GRCm38114,895,283 - 4,928,867 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,895,320 - 4,928,867 (+)EnsemblGRCm38mm10GRCm38
MGSCv37114,795,346 - 4,828,868 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,795,346 - 4,828,868 (+)NCBIMGSCv36mm8
Celera115,392,170 - 5,426,353 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.09NCBI
Thoc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554553,761,874 - 3,795,517 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554553,761,933 - 3,795,517 (-)NCBIChiLan1.0ChiLan1.0
THOC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22339,481,933 - 39,528,384 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12242,183,149 - 42,229,624 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02210,553,665 - 10,599,948 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12228,357,644 - 28,405,148 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2228,357,644 - 28,404,346 (-)Ensemblpanpan1.1panPan2
THOC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12622,748,857 - 22,785,288 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2622,748,895 - 22,784,143 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2622,620,394 - 22,656,869 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02623,122,931 - 23,158,983 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2623,104,476 - 23,173,587 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12622,832,277 - 22,868,802 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02623,095,597 - 23,131,788 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02623,154,953 - 23,191,708 (-)NCBIUU_Cfam_GSD_1.0
Thoc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118112,366,675 - 112,406,795 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366573,461,789 - 3,503,976 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366573,465,707 - 3,503,966 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THOC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11912,386,742 - 12,427,980 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1912,385,431 - 12,427,090 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045113,711,741 - 113,752,521 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Thoc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247475,840,862 - 5,874,334 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247475,840,862 - 5,874,350 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Thoc5
61 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:151
Count of miRNA genes:119
Interacting mature miRNAs:128
Transcripts:ENSRNOT00000011281
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat

Markers in Region
RH127468  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21479,830,405 - 79,830,599 (+)MAPPERmRatBN7.2
Rnor_6.01485,181,616 - 85,181,809NCBIRnor6.0
Rnor_5.01485,859,237 - 85,859,430UniSTSRnor5.0
RGSC_v3.41485,594,833 - 85,595,026UniSTSRGSC3.4
Celera1478,720,871 - 78,721,064UniSTS
RH 3.4 Map14554.1UniSTS
Cytogenetic Map14q21UniSTS
AU046459  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21479,842,585 - 79,842,851 (+)MAPPERmRatBN7.2
Rnor_6.01485,193,796 - 85,194,061NCBIRnor6.0
Rnor_5.01485,871,417 - 85,871,682UniSTSRnor5.0
RGSC_v3.41485,607,013 - 85,607,278UniSTSRGSC3.4
Celera1478,733,051 - 78,733,316UniSTS
Cytogenetic Map14q21UniSTS
RH94567  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81484,044,436 - 84,044,613 (+)Marker Load Pipeline
mRatBN7.21479,830,370 - 79,830,547 (+)MAPPERmRatBN7.2
Rnor_6.01485,181,581 - 85,181,757NCBIRnor6.0
Rnor_5.01485,859,202 - 85,859,378UniSTSRnor5.0
RGSC_v3.41485,594,798 - 85,594,974UniSTSRGSC3.4
Celera1478,720,836 - 78,721,012UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000011281   ⟹   ENSRNOP00000011281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1479,758,917 - 79,792,718 (+)Ensembl
Rnor_6.0 Ensembl1485,142,279 - 85,171,726 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096419   ⟹   ENSRNOP00000083719
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1479,758,919 - 79,792,718 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110992   ⟹   ENSRNOP00000087796
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1479,758,923 - 79,792,718 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115214   ⟹   ENSRNOP00000091748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1479,762,923 - 79,792,715 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115858   ⟹   ENSRNOP00000077470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1479,762,943 - 79,792,718 (+)Ensembl
RefSeq Acc Id: NM_001012153   ⟹   NP_001012153
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81483,982,397 - 84,016,193 (+)NCBI
mRatBN7.21479,758,919 - 79,792,718 (+)NCBI
Rnor_6.01485,142,279 - 85,171,729 (+)NCBI
Rnor_5.01485,816,054 - 85,849,564 (+)NCBI
RGSC_v3.41485,561,381 - 85,612,915 (+)RGD
Celera1478,667,519 - 78,697,308 (+)RGD
Sequence:
RefSeq Acc Id: NM_001401407   ⟹   NP_001388336
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81483,982,397 - 84,016,193 (+)NCBI
mRatBN7.21479,758,919 - 79,792,718 (+)NCBI
RefSeq Acc Id: NM_001401408   ⟹   NP_001388337
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81483,982,397 - 84,016,193 (+)NCBI
mRatBN7.21479,758,919 - 79,792,718 (+)NCBI
RefSeq Acc Id: XM_039092214   ⟹   XP_038948142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81483,982,302 - 84,016,193 (+)NCBI
mRatBN7.21479,758,805 - 79,792,718 (+)NCBI
RefSeq Acc Id: XM_039092215   ⟹   XP_038948143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81483,982,302 - 84,016,193 (+)NCBI
mRatBN7.21479,758,806 - 79,792,718 (+)NCBI
RefSeq Acc Id: NP_001012153   ⟸   NM_001012153
- Peptide Label: isoform 1
- UniProtKB: Q68FX7 (UniProtKB/Swiss-Prot),   A0A8I6AF30 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011281   ⟸   ENSRNOT00000011281
RefSeq Acc Id: XP_038948142   ⟸   XM_039092214
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AHC9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948143   ⟸   XM_039092215
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AHC9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077470   ⟸   ENSRNOT00000115858
Ensembl Acc Id: ENSRNOP00000087796   ⟸   ENSRNOT00000110992
Ensembl Acc Id: ENSRNOP00000091748   ⟸   ENSRNOT00000115214
Ensembl Acc Id: ENSRNOP00000083719   ⟸   ENSRNOT00000096419
RefSeq Acc Id: NP_001388336   ⟸   NM_001401407
- Peptide Label: isoform 2
- UniProtKB: A0A8I5ZVV2 (UniProtKB/TrEMBL),   A6IKJ0 (UniProtKB/TrEMBL),   A0A8I6AF30 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388337   ⟸   NM_001401408
- Peptide Label: isoform 3
- UniProtKB: A0A8L2Q5G3 (UniProtKB/TrEMBL),   A6IKJ1 (UniProtKB/TrEMBL),   A0A8I6AF30 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FX7-F1-model_v2 AlphaFold Q68FX7 1-682 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699450
Promoter ID:EPDNEW_R9974
Type:single initiation site
Name:Thoc5_1
Description:THO complex 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01485,142,271 - 85,142,331EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304991 AgrOrtholog
BioCyc Gene G2FUF-15166 BioCyc
Ensembl Genes ENSRNOG00000008456 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011281.7 UniProtKB/TrEMBL
  ENSRNOT00000096419.1 UniProtKB/TrEMBL
  ENSRNOT00000110992.1 UniProtKB/TrEMBL
  ENSRNOT00000115214.1 UniProtKB/TrEMBL
  ENSRNOT00000115858.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7115655 IMAGE-MGC_LOAD
InterPro THO_Thoc5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:360972 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94002 IMAGE-MGC_LOAD
NCBI Gene 360972 ENTREZGENE
PANTHER PTHR13375 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  THO COMPLEX SUBUNIT 5 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FmiP_Thoc5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB THOC5 RGD
PhenoGen Thoc5 PhenoGen
RatGTEx ENSRNOG00000008456 RatGTEx
UniProt A0A8I5Y7K8_RAT UniProtKB/TrEMBL
  A0A8I5ZVV2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AF30 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHC9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q5G3 ENTREZGENE, UniProtKB/TrEMBL
  A6IKJ0 ENTREZGENE, UniProtKB/TrEMBL
  A6IKJ1 ENTREZGENE, UniProtKB/TrEMBL
  Q68FX7 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-09-30 Thoc5  THO complex subunit 5  Thoc5  THO complex 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Thoc5  THO complex 5  Fmip  Fms interacting protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Fmip  Fms interacting protein  Fmip_predicted  Fms interacting protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Fmip_predicted  Fms interacting protein (predicted)      Symbol and Name status set to approved 70820 APPROVED