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Gene: Pdcd11 (programmed cell death 11) Rattus norvegicus

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Symbol:

Pdcd11

Name:

programmed cell death 11

RGD ID:

1304933

Description:

Predicted to enable NF-kappaB binding activity and RNA binding activity. Predicted to be involved in rRNA processing. Predicted to be located in cytosol and nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human PDCD11 (programmed cell death 11); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC309458; programmed cell death protein 11

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDCD11 (programmed cell death 11)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Pdcd11 (programmed cell death 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pdcd11 (programmed cell death 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDCD11 (programmed cell death 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PDCD11 (programmed cell death 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pdcd11 (programmed cell death 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDCD11 (programmed cell death 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDCD11 (programmed cell death 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pdcd11 (programmed cell death 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pdcd11 (programmed cell death 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	EPOP (elongin BC and polycomb repressive complex 2 associated protein)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Pdcd11 (programmed cell death 11)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PDCD11 (programmed cell death 11)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pdcd11 (programmed cell death 11)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	let-716	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	let-716	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG5728	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RRP5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pdcd11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pdcd11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tbx3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	255,922,198 - 255,963,336 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	255,922,225 - 255,963,336 (+)	Ensembl				GRCr8
mRatBN7.2	1	245,980,840 - 246,021,999 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	245,980,880 - 246,021,999 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	254,107,190 - 254,148,728 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	260,800,488 - 260,842,289 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	253,449,999 - 253,490,785 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	266,866,931 - 266,908,042 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	266,866,931 - 266,908,042 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	274,297,342 - 274,338,453 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	252,413,500 - 252,454,620 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	241,752,536 - 241,793,608 (+)	NCBI		Celera
RGSC_v3.1	1	252,679,744 - 252,718,472 (+)	NCBI
Cytogenetic Map	1	q54	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

acetohydrazide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

atrazine (ISO)

beauvericin (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

cannabidiol (ISO)

CGP 52608 (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clofibric acid (EXP)

clozapine (ISO)

cocaine (EXP)

coumarin (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

flutamide (EXP)

FR900359 (ISO)

fulvestrant (ISO)

genistein (ISO)

glafenine (EXP)

ivermectin (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

motexafin gadolinium (ISO)

N-nitrosodiethylamine (EXP)

nefazodone (EXP)

nickel atom (ISO)

nitrates (ISO)

okadaic acid (ISO)

oxybenzone (EXP)

ozone (ISO)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

Soman (EXP)

tetrachloromethane (EXP)

thioacetamide (EXP)

triphenyl phosphate (ISO)

triticonazole (EXP)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc acetate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

RNA processing (IEA)

rRNA processing (IEA)

Cellular Component

cytosol (IEA,ISO)

nucleolus (IBA,IEA,ISO)

nucleus (IEA,ISO)

small-subunit processome (IBA)

Molecular Function

NF-kappaB binding (IEA,ISO)

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	Both endonucleolytic and exonucleolytic cleavage mediate ITS1 removal during human ribosomal RNA processing.	Sloan KE, etal., J Cell Biol. 2013 Mar 4;200(5):577-88. doi: 10.1083/jcb.201207131. Epub 2013 Feb 25.

Additional References at PubMed

PMID:10229231	PMID:14624448	PMID:22658674	PMID:22681889

Genomics

Comparative Map Data

Pdcd11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	255,922,198 - 255,963,336 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	255,922,225 - 255,963,336 (+)	Ensembl				GRCr8
mRatBN7.2	1	245,980,840 - 246,021,999 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	245,980,880 - 246,021,999 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	254,107,190 - 254,148,728 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	260,800,488 - 260,842,289 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	253,449,999 - 253,490,785 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	266,866,931 - 266,908,042 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	266,866,931 - 266,908,042 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	274,297,342 - 274,338,453 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	252,413,500 - 252,454,620 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	241,752,536 - 241,793,608 (+)	NCBI		Celera
RGSC_v3.1	1	252,679,744 - 252,718,472 (+)	NCBI
Cytogenetic Map	1	q54	NCBI

PDCD11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	103,396,626 - 103,446,294 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	103,396,626 - 103,446,297 (+)	Ensembl			hg38	GRCh38
GRCh37	10	105,156,383 - 105,206,051 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	105,146,402 - 105,196,009 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	105,146,448 - 105,195,463	NCBI
Celera	10	98,896,345 - 98,945,951 (+)	NCBI		Celera
Cytogenetic Map	10	q24.33	NCBI
HuRef	10	98,787,205 - 98,836,814 (+)	NCBI		HuRef
CHM1_1	10	105,440,531 - 105,490,136 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	104,283,926 - 104,333,600 (+)	NCBI		T2T-CHM13v2.0

Pdcd11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	47,079,183 - 47,119,585 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	47,079,207 - 47,120,304 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	47,090,735 - 47,131,146 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	47,090,768 - 47,131,865 (+)	Ensembl			mm10	GRCm38
MGSCv37	19	47,165,256 - 47,205,636 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	47,144,077 - 47,184,457 (+)	NCBI		MGSCv36	mm8
Celera	19	47,859,811 - 47,900,415 (+)	NCBI		Celera
Cytogenetic Map	19	C3	NCBI
cM Map	19	39.24	NCBI

Pdcd11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955485	7,112,457 - 7,150,731 (-)	Ensembl
ChiLan1.0	NW_004955485	7,110,704 - 7,152,301 (-)	NCBI	ChiLan1.0	ChiLan1.0

PDCD11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	115,281,089 - 115,330,352 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	115,286,418 - 115,335,681 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	99,994,509 - 100,043,784 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	103,455,649 - 103,504,784 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	103,455,649 - 103,504,784 (+)	Ensembl			panPan2	panpan1.1

PDCD11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	15,767,936 - 15,812,285 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	15,769,845 - 15,812,279 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	15,939,911 - 15,984,168 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	16,244,175 - 16,288,442 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	16,244,252 - 16,288,440 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	15,793,243 - 15,837,440 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	15,820,958 - 15,865,275 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	15,959,630 - 16,003,888 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pdcd11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	31,027,757 - 31,073,135 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936600	2,631,940 - 2,673,379 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936600	2,631,520 - 2,676,315 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDCD11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	114,327,625 - 114,379,179 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	114,327,583 - 114,382,002 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PDCD11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	96,442,214 - 96,493,320 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	96,442,237 - 96,493,318 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	57,557,983 - 57,609,570 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pdcd11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624831	2,634,095 - 2,673,652 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624831	2,633,132 - 2,673,750 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pdcd11
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	46,624,930 - 46,662,771 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pdcd11
257 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	289
Count of miRNA genes:	187
Interacting mature miRNAs:	212
Transcripts:	ENSRNOT00000027512
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	210980612	255980612	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	226175591	270518180	Rat
1578775	Iddm21	Insulin dependent diabetes mellitus QTL 21	4.13		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	245782829	270518180	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	218829748	263829748	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	248619887	269633915	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	5e-06	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	247133834	270518180	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	210980612	255980612	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	237995023	269633915	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	233480549	270108840	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	200449456	256003563	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	234540191	270518180	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	233480549	270108840	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	210980612	255980612	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	223134011	262090599	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	210980612	255980612	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	225108840	270108840	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	228180370	266453608	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	224633915	269633915	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	232312773	270518180	Rat
1358916	Kidm22	Kidney mass QTL 22	3.32		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	212738576	257738576	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	194786607	262083703	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
2293700	Bmd27	Bone mineral density QTL 27	6.6	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	210980612	255980612	Rat
2293701	Bmd34	Bone mineral density QTL 34	8.3	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	1	210980612	255980612	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	233204160	270518180	Rat
1598839	Rf56	Renal function QTL 56			renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	255849111	270518180	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	241569529	269633915	Rat
1600363	Hc6	Hypercalciuria QTL 6	2.7		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	210980612	255980612	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	243953669	270518180	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	226175591	270518180	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233349180	270518180	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	210980612	255980612	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	228174566	270518180	Rat

Markers in Region

BE107251

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	246,021,754 - 246,021,906 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	266,907,798 - 266,907,949	NCBI	Rnor6.0
Rnor_5.0	1	274,338,209 - 274,338,360	UniSTS	Rnor5.0
RGSC_v3.4	1	252,454,376 - 252,454,527	UniSTS	RGSC3.4
Celera	1	241,793,364 - 241,793,515	UniSTS
RH 3.4 Map	1	1624.4	UniSTS
Cytogenetic Map	1	q54	UniSTS

AU048745

Rat Assembly	Chr	Position (strand)	Source
Cytogenetic Map	5	q32	UniSTS
Cytogenetic Map	13	q24	UniSTS
Cytogenetic Map	6	q32	UniSTS
Cytogenetic Map	17	p12	UniSTS
Cytogenetic Map	16	p14	UniSTS
Cytogenetic Map	13	q26	UniSTS
Cytogenetic Map	10	q22	UniSTS
Cytogenetic Map	7	q11	UniSTS
Cytogenetic Map	8	q24	UniSTS
Cytogenetic Map	5	q21	UniSTS
Cytogenetic Map	4	q24	UniSTS
Cytogenetic Map	2	q11	UniSTS
Cytogenetic Map	1	q54	UniSTS
Cytogenetic Map	1	q36	UniSTS
Cytogenetic Map	18	p11	UniSTS
Cytogenetic Map	13	q13	UniSTS
Cytogenetic Map	10	q24	UniSTS
Cytogenetic Map	8	q31	UniSTS
Cytogenetic Map	3	q21	UniSTS
Cytogenetic Map	13	p13	UniSTS
Cytogenetic Map	1	q21	UniSTS
Cytogenetic Map	11	q23	UniSTS
Cytogenetic Map	10	q31	UniSTS
Cytogenetic Map	16	q12.2	UniSTS
Cytogenetic Map	3	q24	UniSTS
Cytogenetic Map	5	q36	UniSTS
Cytogenetic Map	3	p13	UniSTS

RH129912

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	246,020,919 - 246,021,139 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	266,906,963 - 266,907,182	NCBI	Rnor6.0
Rnor_5.0	1	274,337,374 - 274,337,593	UniSTS	Rnor5.0
RGSC_v3.4	1	252,453,541 - 252,453,760	UniSTS	RGSC3.4
Celera	1	241,792,529 - 241,792,748	UniSTS
RH 3.4 Map	1	1643.8	UniSTS
Cytogenetic Map	1	q54	UniSTS

BE119115

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	245,993,603 - 245,993,788 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	266,879,655 - 266,879,839	NCBI	Rnor6.0
Rnor_5.0	1	274,310,066 - 274,310,250	UniSTS	Rnor5.0
RGSC_v3.4	1	252,426,224 - 252,426,408	UniSTS	RGSC3.4
Celera	1	241,765,260 - 241,765,444	UniSTS
RH 3.4 Map	1	1640.9	UniSTS
Cytogenetic Map	1	q54	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005487588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC112451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000027512 ⟹ ENSRNOP00000027512

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	255,922,225 - 255,963,336 (+)	Ensembl
mRatBN7.2 Ensembl	1	245,980,880 - 246,021,999 (+)	Ensembl
Rnor_6.0 Ensembl	1	266,866,931 - 266,908,042 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096398 ⟹ ENSRNOP00000092472

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	245,980,900 - 246,021,161 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097870 ⟹ ENSRNOP00000089018

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	255,922,225 - 255,963,336 (+)	Ensembl
mRatBN7.2 Ensembl	1	245,980,880 - 246,021,999 (+)	Ensembl

RefSeq Acc Id:

NM_001107604 ⟹ NP_001101074

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,922,225 - 255,963,336 (+)	NCBI
mRatBN7.2	1	245,980,880 - 246,021,999 (+)	NCBI
Rnor_6.0	1	266,866,931 - 266,908,042 (+)	NCBI
Rnor_5.0	1	274,297,342 - 274,338,453 (+)	NCBI
RGSC_v3.4	1	252,413,500 - 252,454,620 (+)	RGD
Celera	1	241,752,536 - 241,793,608 (+)	RGD

Sequence:

show sequence

ATAACGGAAATAGGCCTGGCCTTACCTGGGCTCTTGGAAGAGTCGCGTGGGGCTGTCGGCTCAC
TGTTCTGTGCGTGCGATTGCTTTGAAGCGGTCCGTGAGCCGCAGGAGACCCAAACATGGCAAAC
CTGGAGGAAAGCTTCCCCCGAGGGGGTACACGGAAACCCCACAAATCAGAGAAATCGTCCCAGC
CGGTGGTTGAACAAGACAACTTATTTGACATTTCCACAGAAGAAGGTTCCGTTAAAAGGAAAAA
GAGCCAGAAAGGGCCAGCAAAAACAAAAAAGTTGAAAATTGAGAAGAGAAAATCCAATAAGTCT
ATGAAAGAGAAGTTTGAAATTCTTAGTCTTGAGTCCTTATGTGAGGGGATGCGAATTTTGGGGT
GTGTGAAAGAGGTGAATGAGCTGGAGCTCGTGGTCAGTCTTCCCAATGGCCTCCAAGGGTTTGT
GCAAGTGACCGAAATCTGTGATGCCTACACGCAGAAGCTGAACGAGCAGGTGGCACAAGAGGAG
CCTCTGGAGGACCTACTCCGCTTGCCTGAGCTCTTCTCACCTGGAATGCTAGTGAGGTGTGTGG
TGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTTAAGCTTTCCGTGAACCCCAAACG
TGTCAACAAAGTGCTGAGTGCCGAGGCCCTGAGGCCTGGCATGCTGCTGACAGGTACAGTGTCC
AGCCTGGAAGACCATGGCTACCTAGTGGACATTGGGGTTGATGGGACCAGAGCTTTTCTGTCAC
TACAAAAGGCACAAGAATACATTCGACAGAAGAACAAAGGTGCTAAGTTCAAAGTCGGCCAATA
CCTGACCTGTGTGGTTGAAGAGCTGAAAAGCAACGGAGGAGTTGTGAGTCTCTCTGTAGAACAC
TCCCAGGTTTCTTCTGCCTTTGCAACCGAGGAGCAGAGCTGGAACCTGAATAACTTACTGCCAG
GGCTGGTGGTCAGGGCCCAGGTGCAGAAGGTGACTCAGTTTGGACTCCAGCTAAATTTCCTTAC
GTTCTTCACGGGTCTGGTTGACTTCATGCACTTGGAGCCCAAGAAAATGGGGTCTTATTCTTCA
AAGCAAACAGTAAAGGCCTGCATCCTCTGTGTCCATCCTCGTACCAGAGTTGTGCGACTGAGCC
TGCGGCCCATCTTCCTGCATCCTGGACGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGAC
TGTGCTGGACGATGCTTCTGTTGAGGGTTTTTTCGAGAAGGCTGGGGCCATCTTCAGGCTGAGG
GATGGGGTACTGGCCTATGCCCGGCTCAGCCATCTCTCTGATTCTAAGAAGGCATTCAGTGCTG
AGGCCTTCAAACTGGGGAGCACTCACAGATGCAGAATCATTGACTACAGCCAAATGGATGAGCT
GGCCCTGCTGTCTCTGCGGAAATCAATTATTGCAGCTCCGTTTCTTAGATATCAGGACATCAAG
ACAGGGACAATAGTAAAGGGCAAGGTGCTGGCTTTGAAGCCATTTGGGATGCTGGTGAAGGTGG
GTGAGCAAATGAGAGGCCTGGTACCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGA
GAAGAAGTTCAACACAGGGGACGAGGTCAAGTGCAGGGTTTTGCTCTGTGATCCTGAAGCCAAG
AAGCTAATAATGACCCTGAAGAAAACCCTTGTCACATCCAAACTACCTGCCATTACCTGCTATG
AGGATGCCAAGCCTGGCCTACAGACACATGGTGTTATCATAAGGGTCAAGGACTATGGCTGCCT
TGTGAAGTTCTACAATGATGTGCAGGGGCTAGTGCCCAAGCACGAGCTCAGTGCCCAGCACATC
CCTGACCCAGAGAGGGTCTTTTACACTGGCCAGGTGGTCAAGGTGGCAGTGCTGAACTGTGAGC
CTTCCAAAGAGAGGATGCTCCTGTCCTTTAAACTGTTGAGTGGTTCGGAGCCAAAGGACGAGAG
TGTTAAGAACAGTAAGAAGAAAGGAAGCACCGTGAACACTGGGCAGTTGGTGGATGTGAAGGTT
CTGGAGAAGACCAAAAATGGGCTGGAGGTGGCCATCCTGCCCCACAACATCCCTGCATTCCTCC
CGACGCCTCACTTGTCTGACCATGTTGCCAATGGCCCGTTGTTGCATCACTGGCTCCAGACAGG
TGACACCCTTCACCGAGTTCTGTGTCTGAGCCAGAGCGAGAAACACATTCTTCTCTGCAGGAAG
CCAGCTTTGGTCTCCACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCGGAAATCCAGCCCG
GAATGCTGCTCATTGGTTTTGTGAAGAGCATTAAGGACTATGGAGTGTTCGTCCAGTTCCCCTC
AGGTCTTAGTGGACTGTCCCCCAAAACTATCATGAGTGACAAGTTCGTAACCACGCCAAGTGAA
CACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAGTCGAAGCAAAGGA
TGTTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGACTCGGCCAGCACCAGCTTCCTCCT
CCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGAAGCCTTATGAGCAACCAAGACTCGGTA
TTGATCCAGACACTGGCTGACATGACCCCAGGGATGGTCCTTGATGCCATGGTACAAGAGGTGT
TGGAAAATGGTTCAGTGGTGTTCGGCGGGGGCCCTGTGCCTGACCTGATCCTGAGAGCCAGCAG
ATACCACCGGGCAGGGCAGGAGCTGGAGCCTGGGCAGAAGAAGAAAGTCGTGGTTCTGCATGTG
GACGCGTTGAAGTTGGAGGTCCATGTTTCCCTTCACCAGGACTTGGTGAATAGGAAAGCTAGAA
AGCTGAGAAAAAACAGCAGACACCAGGGAATTGTACAGCATCTGGAAGAGTCCTTCGCTGTGGC
CTCCTTGGTAGAGACTGGCCACCTTGTGGCTTTCTCTCTGATCTCTCACCTCAACGATACCTTC
CACTTTGACTCTGAGAAGCTACGTGTGGGGCAGGGTGTCTGCCTCACCCTCAAGACCACAGAAC
CAGGAGTGACTGGTCTGATTTTGGCTGTGGAAGGACCAGCTTCTAAGAGAATCAGGATGCCAGC
TCAGAGGGATTCAGAGACAGTTGATGACAAAGGGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAC
TTGACTGTGAGGTCTAAGAAGAGTCATAGCCTGGCTATTGGGGACAAAGTCACCGGGACCATTA
AGTCTGTGAAAGCCACACATGCTGTTGTGACCCTAGATGATGGCTTCATTGGTTGTATCCATGT
ATCCCGCATTCTAGATGATGTCCCAGAGGGCGTCTCTCCTACGACCACACTGAAAGCTGGGAAG
AAAGTCACTGCGAGAGTGATCGGTGGGCGAGATGTGAAGACATCTAAGTTTCTTCCAATAAGTC
ACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAGTGAGTTGAAGGGTGACTA
CAGGGCTCTTAATACTCACTCTGTGAGCCCCATGGAGAAGATTAGGCAGTACCAGGCTGGCCAG
ACTGTGACTTGCTTCTTAAAGAAGTACAATGTGATGAAGAAGTGGCTTGAAGTGGACATTGAAC
CAGACATCCGAGGGAGAATTCCCTTGTTGCTCACTTCGCTCAGCTTCAAGGTTCTGAAACACCC
AGACAAGAAGTTCCAGATTGGGCAGGCCATCAAGGCCACTGTTGTCGGCCCAGACATTCCCAGG
GCTTTCTTATGTCTGTCACTCATAGGTCCTTACAAACTTGAGGAAGGTGACGTGGCCATGGGCC
GAGTGCTAAAGGTGTTGCCCAACAAGGGACTGACTGTCTCCTTCCCCTTTGGGAGGATAGGGAA
AGTCAGTGTGTTTCATTTGAGTGACTCCTACTCCGAGGAGCCCCTGACAGACTTCTGCCCCCAG
AAGATTGTCCGATGTTATATCCTGTCAACAGCACACCGTATGCTGGCCCTGTCACTGCGATCAT
CCAGGACAAACAAAGAGACAAAAAGTAAAATAGAAGACCCAGAAGTGAACTCCATCGAGGACAT
CCAGGCAGGGCAGCTCCTTCGGGGCTATGTGAAGTCCATCCTGCCGAGTAGTGTGGTCATAGGC
CTTGGACCTTCAGTTATGGGTCTGGTCAAGCACTCACATGTCTCTCAGTGTGTCTCACGTGAGA
AAGAGCTTTACGACAAATGCCTCCCCGAGGGAAAGCTGGTCACTGCCAGGGTCCTATGTGTGAA
CCCCAAGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAAGCCGGATGTGTTC
TCTGCTTCCCCAGAACCACCTCTTCCTAAACAAGAGGGGAGAGAAGGTGGGACTGAGAAGGGCC
TGAAAGGAGAATCGAAGAGGAGTCAGAGAAGGAGAGAGAAGAACCAGAAGATGCGAGAAGAGTC
TGGGCTGTACAGCCAGGAGAAGAAAGAACCCCGGAAGTCACAGAGGGGTGGGCAGAGCAAGCGG
GAGCGCCAGGAGTCTGAGAGCGAGCAGGAACTAGTGAACAAGAGGCCAAAGAAGTCTGGGGCAC
CAGAAGATGACGACAGTGGTGTGGAAGTGTACTACCGGGAAGGAGAGGATGAGGTGGAGGAGCC
AAAGGTGCCTCCCGGGGGAAAACAGAGCAAACCCACAGAGGTGCCCCGGCTGCAGCTCTCTAAA
GGCTTCATCTGGGACGTGGGGCTCGACTCTCTGACTCCAGCCCTGCCACTCCGAGGAGAGAGCT
CAGACAGCGAGGAGGATGAGCAGCCACACCAAGCCAAGAAGAAGAAGGGCAAGAAGGAAAGGGA
GCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCACGCATTGAGGAGGCACTCATGGACCCCGGG
CGACAGCCAGAATCCGCGGACGACTTTGACAGGCTGGTGCTGAGCTCCCCCAACAGCTCCATCC
TTTGGCTGCAGTACATGGCTTTCCACCTCCAGGCCACCGAGATTGAGAAGGCCCGGGCTGTAGC
TGAGAGGGCCCTGAAGACCATCTCGTTCAGAGAGGAGCAGGAAAAGCTGAACGTGTGGGTGGCT
CTGCTGAACCTAGAAAACATGTACGGCTCTCAGGAGTCGCTGGCCAAGGTCTTCGAGCGAGCTG
TGCAGTACAATGAGCCTCTCAAGGTCTTCCTGCACCTGGCTGACATCTACACCAAGTCCGAGAA
GTTCAAGGAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGATTCCGGCAGGAGAAGGCTGTC
TGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCCGGGGCCAGTCACCGCGTGCTGC
AGCGAGCCCTGGAGTGCCTGCCCACCAAGGAACATGTGGATGTGATTGTCAAGTTTGCCCAGCT
AGAGTTCCAGCTCGGGGATGTGGAGCGGGCTAAAGCCATTTTTGAAAACACACTGACCACCTAC
CCAAAACGCACAGATGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGAAAG
AAGTCAGGGACATCTTTGAGCGGGTCATTCATCTGAGCCTGGCCCCCAAGAGGATGAAGTTCTT
CTTCAAGCGCTACCTGGACTACGAGAAGCAGCATGGCACCGAAAAGGACGTGCAGGCTGTCAAG
GCGAAGGCCTTGGAGTATGTGGAGGCCAAGAGCTCGGCGCTGGAGGACCAGTAGCCCAGGCTCC
ACCGGACGCTGGGAACAGCAGGCCGCCTAACCTGCAGCAGGCACCTGGACACTGGGAGCCGTTG
CCGGGGACTGTTGGAATCGCTGCTTTTTCTGCAGCGTGCCTGTGGGCTGTGATGCTCATGGAAG
GCACACGACTCACTGATGCCAACTTCCTCATCTTGTCAGAATAAAGAATTTTGAGGATTTTTTT
GTAAACTCTCAAAAGATTGTTTTAAAATATTTTCTTACTGTGGTCCTGGCAGCCTGGAGCATGC
TACATGGACCCAGCTAGCCTTGAACTCTGAAGGGATTAAAGGCACATATTATCACTTCTTGTTT
TAAAGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGG
TGTGTTTGTGTGTGGTGTGTGTGTGTGTGGTATGTATACACATGTACTTTTTTTTTTAATTTAG
AGTGCTATAGATTGAGCCGAGGCCTTACATGTGCTATAAAGTGTTCTTCCACTGCTCTGCACCC
TAGCCCTTGAGGTTCGATGCTCTCATTTCGCTCCTGAGGCTGCTCAGTGTTTAGGCAGCAGGCT
CTTAAGCTTCTAGATTAAAAAAGCAAGCATTTCTCAAAGGCAATGCCAGTGGATTTCATGGTCA
GGTTCCCACTTTGTCCCTTGGCAAGCTCTCAGCCCACTCTCGAGGTGGGTAGCTGGAAAGACCT
CAGGCCATGTGGTCTTGGGGTCTAAGCATTGTCTTAGCCCAGCCTGTACTATGTGCCCTGTTTT
GGAGGCTGGGAGACTAAGACCAGAGGACAGAGGAAGAATCCAGGAGAAAAAAGGGAAACCAAAG
CTACTAAGGAAAGCTGAAAGCATTGGTTAAACAGCCCGGTCTCACCCGACTCCCCTCAACTCTG
GCACAACCCAGCTTTCTGGGATGCTGGCACAGAGCCTTTTAGTTGTTGGGGTTTTGTTTTGTTT
GTTTTTGTTTTTTGTTTGTTGGTTTGAGTCTAAAAGAAATTAAAAGCTTTCTTTGACAGAGTCT
AAAA

hide sequence

RefSeq Acc Id:

XM_063265069 ⟹ XP_063121139

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,939,379 - 255,962,618 (+)	NCBI

RefSeq Acc Id:

XR_005487588

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,922,198 - 255,951,460 (+)	NCBI
mRatBN7.2	1	245,980,840 - 246,016,445 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101074	(Get FASTA)	NCBI Sequence Viewer
	XP_063121139	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94371	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027512
	ENSRNOP00000027512.4
	ENSRNOP00000089018.2

RefSeq Acc Id:

NP_001101074 ⟸ NM_001107604

- UniProtKB:

D3ZNI3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MANLEESFPRGGTRKPHKSEKSSQPVVEQDNLFDISTEEGSVKRKKSQKGPAKTKKLKIEKRKS
NKSMKEKFEILSLESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQVTEICDAYTQKLNEQVA
QEEPLEDLLRLPELFSPGMLVRCVVSSLDVTESGKKSVKLSVNPKRVNKVLSAEALRPGMLLTG
TVSSLEDHGYLVDIGVDGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLTCVVEELKSNGGVVSLS
VEHSQVSSAFATEEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNFLTFFTGLVDFMHLEPKKMGS
YSSKQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTVLDDASVEGFFEKAGAIF
RLRDGVLAYARLSHLSDSKKAFSAEAFKLGSTHRCRIIDYSQMDELALLSLRKSIIAAPFLRYQ
DIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKCRVLLCDP
EAKKLIMTLKKTLVTSKLPAITCYEDAKPGLQTHGVIIRVKDYGCLVKFYNDVQGLVPKHELSA
QHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVD
VKVLEKTKNGLEVAILPHNIPAFLPTPHLSDHVANGPLLHHWLQTGDTLHRVLCLSQSEKHILL
CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTT
PSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQ
DSVLIQTLADMTPGMVLDAMVQEVLENGSVVFGGGPVPDLILRASRYHRAGQELEPGQKKKVVV
LHVDALKLEVHVSLHQDLVNRKARKLRKNSRHQGIVQHLEESFAVASLVETGHLVAFSLISHLN
DTFHFDSEKLRVGQGVCLTLKTTEPGVTGLILAVEGPASKRIRMPAQRDSETVDDKGEEEEEEE
EEDLTVRSKKSHSLAIGDKVTGTIKSVKATHAVVTLDDGFIGCIHVSRILDDVPEGVSPTTTLK
AGKKVTARVIGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGDYRALNTHSVSPMEKIRQYQ
AGQTVTCFLKKYNVMKKWLEVDIEPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQAIKATVVGPD
IPRAFLCLSLIGPYKLEEGDVAMGRVLKVLPNKGLTVSFPFGRIGKVSVFHLSDSYSEEPLTDF
CPQKIVRCYILSTAHRMLALSLRSSRTNKETKSKIEDPEVNSIEDIQAGQLLRGYVKSILPSSV
VIGLGPSVMGLVKHSHVSQCVSREKELYDKCLPEGKLVTARVLCVNPKKNLIELSLLPSDTGKP
DVFSASPEPPLPKQEGREGGTEKGLKGESKRSQRRREKNQKMREESGLYSQEKKEPRKSQRGGQ
SKRERQESESEQELVNKRPKKSGAPEDDDSGVEVYYREGEDEVEEPKVPPGGKQSKPTEVPRLQ
LSKGFIWDVGLDSLTPALPLRGESSDSEEDEQPHQAKKKKGKKERELEKQKAEKELSRIEEALM
DPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNV
WVALLNLENMYGSQESLAKVFERAVQYNEPLKVFLHLADIYTKSEKFKEAGELYNRMLKRFRQE
KAVWIKYGAFVLGRSQAGASHRVLQRALECLPTKEHVDVIVKFAQLEFQLGDVERAKAIFENTL
TTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQ
AVKAKALEYVEAKSSALEDQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000027512 ⟸ ENSRNOT00000027512

Ensembl Acc Id:

ENSRNOP00000089018 ⟸ ENSRNOT00000097870

Ensembl Acc Id:

ENSRNOP00000092472 ⟸ ENSRNOT00000096398

RefSeq Acc Id:	XP_063121139 ⟸ XM_063265069
- Peptide Label:	isoform X1

Protein Domains

S1 motif

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZNI3-F1-model_v2	AlphaFold	D3ZNI3	1-1876	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690977

Promoter ID:

EPDNEW_R1501

Type:

initiation region

Name:

Pdcd11_1

Description:

programmed cell death 11

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	266,866,931 - 266,866,991	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304933	AgrOrtholog
BioCyc Gene	G2FUF-55490	BioCyc
Ensembl Genes	ENSRNOG00000020304	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027512	ENTREZGENE
	ENSRNOT00000027512.5	UniProtKB/TrEMBL
	ENSRNOT00000097870.2	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
	2.40.50.140	UniProtKB/TrEMBL
InterPro	HAT	UniProtKB/TrEMBL
	NA-bd_OB-fold	UniProtKB/TrEMBL
	Rbsml_prot_S1_RNA-bd_dom	UniProtKB/TrEMBL
	Rrp5	UniProtKB/TrEMBL
	Rrp5_S1	UniProtKB/TrEMBL
	Rrp5_S1_rpt_hs11_sc8	UniProtKB/TrEMBL
	Rrp5_S1_rpt_hs1_sc1	UniProtKB/TrEMBL
	Suf	UniProtKB/TrEMBL
	TPR-like_helical	UniProtKB/TrEMBL
NCBI Gene	309458	ENTREZGENE
PANTHER	PROTEIN RRP5 HOMOLOG	UniProtKB/TrEMBL
	PTHR23270	UniProtKB/TrEMBL
Pfam	PF00575	UniProtKB/TrEMBL
	S1_RRP5	UniProtKB/TrEMBL
	Suf	UniProtKB/TrEMBL
PhenoGen	Pdcd11	PhenoGen
PROSITE	PS50126	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000020304	RatGTEx
SMART	HAT	UniProtKB/TrEMBL
	SM00316	UniProtKB/TrEMBL
Superfamily-SCOP	Nucleic_acid_OB	UniProtKB/TrEMBL
	SSF48452	UniProtKB/TrEMBL
UniProt	A0A8I6AB17_RAT	UniProtKB/TrEMBL
	D3ZNI3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-06-27	Pdcd11	programmed cell death 11	Pdcd11	programmed cell death protein 11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Pdcd11	programmed cell death protein 11	Pdcd11_predicted	programmed cell death protein 11 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Pdcd11_predicted	programmed cell death protein 11 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations