Ctdspl (CTD small phosphatase like) - Rat Genome Database

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Gene: Ctdspl (CTD small phosphatase like) Rattus norvegicus
Analyze
Symbol: Ctdspl
Name: CTD small phosphatase like
RGD ID: 1304841
Description: Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of G1/S transition of mitotic cell cycle and negative regulation of protein phosphorylation. Orthologous to human CTDSPL (CTD small phosphatase like); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; INTERACTS WITH (+)-schisandrin B; 1,3-dinitrobenzene; 2,2',5,5'-tetrachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like; CTD small phosphatase-like protein; LOC301056
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88127,520,478 - 127,644,999 (+)NCBIGRCr8
mRatBN7.28118,642,729 - 118,767,238 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8118,642,672 - 118,767,117 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8124,244,175 - 124,368,918 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08122,443,118 - 122,567,868 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08120,275,667 - 120,400,578 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08127,065,292 - 127,726,248 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8127,702,534 - 127,726,127 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08126,919,687 - 126,943,278 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48123,960,578 - 123,993,452 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18123,974,546 - 124,009,969 (+)NCBI
Celera8117,907,827 - 117,940,703 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
antirheumatic drug  (ISO)
arachidonic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dorsomorphin  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
indometacin  (ISO)
lipopolysaccharide  (ISO)
mitomycin C  (ISO)
nickel atom  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
paricalcitol  (ISO)
phenobarbital  (ISO)
phosphorus atom  (ISO)
phosphorus(.)  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
topotecan  (EXP)
triacsin C  (ISO)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genetic and epigenetic analysis of non-small cell lung cancer with NotI-microarrays. Dmitriev AA, etal., Epigenetics. 2012 May;7(5):502-13. doi: 10.4161/epi.19801. Epub 2012 May 1.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19056867   PMID:22210897  


Genomics

Comparative Map Data
Ctdspl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88127,520,478 - 127,644,999 (+)NCBIGRCr8
mRatBN7.28118,642,729 - 118,767,238 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8118,642,672 - 118,767,117 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8124,244,175 - 124,368,918 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08122,443,118 - 122,567,868 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08120,275,667 - 120,400,578 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08127,065,292 - 127,726,248 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8127,702,534 - 127,726,127 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08126,919,687 - 126,943,278 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48123,960,578 - 123,993,452 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18123,974,546 - 124,009,969 (+)NCBI
Celera8117,907,827 - 117,940,703 (+)NCBICelera
Cytogenetic Map8q32NCBI
CTDSPL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38337,861,880 - 37,984,469 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl337,861,880 - 37,984,469 (+)EnsemblGRCh38hg38GRCh38
GRCh37337,903,371 - 38,025,960 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36337,878,673 - 38,000,964 (+)NCBINCBI36Build 36hg18NCBI36
Build 34337,878,672 - 38,000,964NCBI
Celera337,838,040 - 37,960,332 (+)NCBICelera
Cytogenetic Map3p22.2NCBI
HuRef337,846,293 - 37,968,646 (+)NCBIHuRef
CHM1_1337,855,336 - 37,977,609 (+)NCBICHM1_1
T2T-CHM13v2.0337,866,043 - 37,988,649 (+)NCBIT2T-CHM13v2.0
Ctdspl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399118,751,313 - 118,873,187 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9118,755,521 - 118,873,066 (+)EnsemblGRCm39 Ensembl
GRCm389118,926,536 - 119,044,119 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9118,926,453 - 119,043,998 (+)EnsemblGRCm38mm10GRCm38
MGSCv379118,835,654 - 118,953,237 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369118,775,151 - 118,892,696 (+)NCBIMGSCv36mm8
Celera9119,394,549 - 119,512,016 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map971.07NCBI
Ctdspl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554214,705,664 - 4,831,726 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554214,705,664 - 4,831,463 (+)NCBIChiLan1.0ChiLan1.0
CTDSPL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2237,816,360 - 37,938,738 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1337,821,114 - 37,943,502 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0337,761,101 - 37,883,330 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1338,093,899 - 38,166,485 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl338,127,971 - 38,166,485 (+)Ensemblpanpan1.1panPan2
CTDSPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1237,616,264 - 7,760,595 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl237,725,446 - 7,758,067 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha237,687,460 - 7,802,513 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,934,233 - 8,049,568 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1237,748,828 - 7,863,990 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0237,889,843 - 8,005,071 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0237,882,182 - 7,997,474 (+)NCBIUU_Cfam_GSD_1.0
Ctdspl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118194,090,974 - 194,201,910 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647327,228,036 - 27,340,483 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647327,228,512 - 27,340,483 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTDSPL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1322,707,444 - 22,825,400 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11322,707,736 - 22,828,773 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21324,871,071 - 24,994,198 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CTDSPL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1151,418,855 - 1,536,527 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl151,418,848 - 1,536,457 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606310,149,434 - 10,267,766 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctdspl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477320,158,045 - 20,290,992 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477320,154,468 - 20,290,975 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ctdspl
983 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:60
Count of miRNA genes:58
Interacting mature miRNAs:59
Transcripts:ENSRNOT00000075793
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
1599689Iddm24Insulin dependent diabetes mellitus QTL 244.720.001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)8112834440118649220Rat

Markers in Region
D8Rat118  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,649,006 - 118,649,220 (+)MAPPERmRatBN7.2
Rnor_6.08127,609,234 - 127,609,447NCBIRnor6.0
Rnor_5.08126,827,614 - 126,827,827UniSTSRnor5.0
RGSC_v3.48123,875,958 - 123,876,328RGDRGSC3.4
RGSC_v3.48123,876,071 - 123,876,284UniSTSRGSC3.4
RGSC_v3.18123,895,808 - 123,896,021RGD
Celera8117,824,315 - 117,824,528UniSTS
RH 3.4 Map81292.1RGD
RH 3.4 Map81292.1UniSTS
RH 2.0 Map8999.3RGD
SHRSP x BN Map881.87RGD
Cytogenetic Map8q32UniSTS
D8Got194  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,657,930 - 118,658,059 (+)MAPPERmRatBN7.2
Rnor_6.08127,618,022 - 127,618,150NCBIRnor6.0
Rnor_5.08126,835,833 - 126,835,961UniSTSRnor5.0
RGSC_v3.48123,883,743 - 123,883,872RGDRGSC3.4
RGSC_v3.48123,883,744 - 123,883,872UniSTSRGSC3.4
RGSC_v3.18123,903,481 - 123,903,609RGD
RH 3.4 Map81292.2UniSTS
RH 3.4 Map81292.2RGD
RH 2.0 Map81003.0RGD
Cytogenetic Map8q32UniSTS
RH142543  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,767,104 - 118,767,211 (+)MAPPERmRatBN7.2
Rnor_6.08127,726,115 - 127,726,221NCBIRnor6.0
Rnor_5.08126,943,266 - 126,943,372UniSTSRnor5.0
RGSC_v3.48123,993,440 - 123,993,546UniSTSRGSC3.4
Celera8117,940,691 - 117,940,797UniSTS
RH 3.4 Map81290.3UniSTS
Cytogenetic Map8q32UniSTS
RH144327  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,708,480 - 118,708,601 (+)MAPPERmRatBN7.2
Rnor_6.08127,668,347 - 127,668,467NCBIRnor6.0
Rnor_5.08126,885,498 - 126,885,618UniSTSRnor5.0
RGSC_v3.48123,934,046 - 123,934,166UniSTSRGSC3.4
Celera8117,882,227 - 117,882,347UniSTS
RH 3.4 Map81290.2UniSTS
Cytogenetic Map8q32UniSTS
RH144577  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,765,209 - 118,765,417 (+)MAPPERmRatBN7.2
Rnor_6.08127,724,220 - 127,724,427NCBIRnor6.0
Rnor_5.08126,941,371 - 126,941,578UniSTSRnor5.0
RGSC_v3.48123,991,545 - 123,991,752UniSTSRGSC3.4
Celera8117,938,796 - 117,939,003UniSTS
RH 3.4 Map81313.6UniSTS
Cytogenetic Map8q32UniSTS
BE097955  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,764,671 - 118,764,832 (+)MAPPERmRatBN7.2
Rnor_6.08127,723,682 - 127,723,842NCBIRnor6.0
Rnor_5.08126,940,833 - 126,940,993UniSTSRnor5.0
RGSC_v3.48123,991,007 - 123,991,167UniSTSRGSC3.4
Celera8117,938,258 - 117,938,418UniSTS
RH 3.4 Map81288.3UniSTS
Cytogenetic Map8q32UniSTS
BE105202  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,754,535 - 118,754,699 (+)MAPPERmRatBN7.2
Rnor_6.08127,713,688 - 127,713,851NCBIRnor6.0
Rnor_5.08126,930,839 - 126,931,002UniSTSRnor5.0
RGSC_v3.48123,980,866 - 123,981,029UniSTSRGSC3.4
Celera8117,928,117 - 117,928,280UniSTS
RH 3.4 Map81311.5UniSTS
Cytogenetic Map8q32UniSTS
AW533609  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,756,827 - 118,756,999 (+)MAPPERmRatBN7.2
Rnor_6.08127,715,980 - 127,716,151NCBIRnor6.0
Rnor_5.08126,933,131 - 126,933,302UniSTSRnor5.0
RGSC_v3.48123,983,159 - 123,983,330UniSTSRGSC3.4
Celera8117,930,409 - 117,930,580UniSTS
RH 3.4 Map81288.9UniSTS
Cytogenetic Map8q32UniSTS
BE114426  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,646,082 - 118,646,242 (+)MAPPERmRatBN7.2
Rnor_6.08127,606,310 - 127,606,469NCBIRnor6.0
Rnor_5.08126,824,690 - 126,824,849UniSTSRnor5.0
RGSC_v3.48123,873,146 - 123,873,305UniSTSRGSC3.4
Celera8117,821,391 - 117,821,550UniSTS
RH 3.4 Map81292.1UniSTS
Cytogenetic Map8q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 24 24 20 5 20 52 34 33 11
Low 19 33 21 14 21 8 11 22 1 8 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000075793   ⟹   ENSRNOP00000064414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8118,642,672 - 118,767,117 (+)Ensembl
Rnor_6.0 Ensembl8127,702,534 - 127,726,127 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112881   ⟹   ENSRNOP00000085754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8118,642,672 - 118,767,117 (+)Ensembl
RefSeq Acc Id: NM_001106865   ⟹   NP_001100335
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,611,998 - 127,644,878 (+)NCBI
mRatBN7.28118,734,239 - 118,767,117 (+)NCBI
Rnor_6.08127,065,292 - 127,726,127 (+)NCBI
Rnor_5.08126,919,687 - 126,943,278 (+)NCBI
RGSC_v3.48123,960,578 - 123,993,452 (+)RGD
Celera8117,907,827 - 117,940,703 (+)RGD
Sequence:
RefSeq Acc Id: NM_001395740   ⟹   NP_001382669
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,520,499 - 127,644,999 (+)NCBI
mRatBN7.28118,642,731 - 118,767,238 (+)NCBI
RefSeq Acc Id: XM_039081298   ⟹   XP_038937226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,520,478 - 127,644,999 (+)NCBI
mRatBN7.28118,642,729 - 118,767,238 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001100335 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382669 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937226 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL76931 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064414
  ENSRNOP00000064414.2
  ENSRNOP00000085754
  ENSRNOP00000085754.1
Reference Protein Sequences
RefSeq Acc Id: NP_001100335   ⟸   NM_001106865
- Peptide Label: isoform 2
- UniProtKB: A6I3U6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000064414   ⟸   ENSRNOT00000075793
RefSeq Acc Id: XP_038937226   ⟸   XM_039081298
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GE87 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000085754   ⟸   ENSRNOT00000112881
RefSeq Acc Id: NP_001382669   ⟸   NM_001395740
- Peptide Label: isoform 1
- UniProtKB: M0R4W4 (UniProtKB/TrEMBL)
Protein Domains
FCP1 homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R4W4-F1-model_v2 AlphaFold M0R4W4 1-119 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304841 AgrOrtholog
BioCyc Gene G2FUF-28814 BioCyc
Ensembl Genes ENSRNOG00000046257 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075793 ENTREZGENE
  ENSRNOT00000075793.3 UniProtKB/TrEMBL
  ENSRNOT00000112881.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1000 UniProtKB/TrEMBL
InterPro Dullard_phosphatase UniProtKB/TrEMBL
  HAD-like_dom UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  NIF UniProtKB/TrEMBL
  RNA_Pol_CTD_Phosphatase UniProtKB/TrEMBL
KEGG Report rno:301056 UniProtKB/TrEMBL
NCBI Gene 301056 ENTREZGENE
PANTHER CTD SMALL PHOSPHATASE-LIKE PROTEIN UniProtKB/TrEMBL
  DULLARD PROTEIN PHOSPHATASE UniProtKB/TrEMBL
Pfam NIF UniProtKB/TrEMBL
PhenoGen Ctdspl PhenoGen
PROSITE FCP1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046257 RatGTEx
SMART CPDc UniProtKB/TrEMBL
Superfamily-SCOP HAD-like_dom UniProtKB/TrEMBL
UniProt A0A8I6GE87 ENTREZGENE, UniProtKB/TrEMBL
  A6I3U6 ENTREZGENE, UniProtKB/TrEMBL
  M0R4W4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-12 Ctdspl  CTD small phosphatase like  Ctdspl  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ctdspl  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like   Ctdspl_predicted  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ctdspl_predicted  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like (predicted)      Symbol and Name status set to approved 70820 APPROVED