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Gene: Elmo3 (engulfment and cell motility 3) Rattus norvegicus

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Symbol:

Elmo3

Name:

engulfment and cell motility 3

RGD ID:

1304734

Description:

Predicted to enable SH3 domain binding activity. Predicted to be involved in actin filament organization and cell motility. Predicted to be located in cytoplasm. Orthologous to human ELMO3 (engulfment and cell motility 3); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; atrazine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

engulfment and cell motility 3, ced-12 homolog; engulfment and cell motility 3, ced-12 homolog (C. elegans); engulfment and cell motility protein 3; LOC291962; MGC124673

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ELMO3 (engulfment and cell motility 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Elmo3 (engulfment and cell motility 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Elmo3 (engulfment and cell motility 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ELMO3 (engulfment and cell motility 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ELMO3 (engulfment and cell motility 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Elmo3 (engulfment and cell motility 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ELMO3 (engulfment and cell motility 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ELMO3 (engulfment and cell motility 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Elmo3 (engulfment and cell motility 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ELMO3 (engulfment and cell motility 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Elmo3 (engulfment and cell motility 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	elmo3 (engulfment and cell motility 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ced-12	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Ced-12	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	elmo3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	50,091,883 - 50,096,324 (+)	NCBI		GRCr8
mRatBN7.2	19	33,181,952 - 33,186,399 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	33,182,036 - 33,186,410 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	39,997,640 - 40,002,003 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	40,650,959 - 40,655,322 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	42,939,898 - 42,944,261 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	37,260,330 - 37,264,832 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	37,260,469 - 37,264,829 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	48,126,191 - 48,130,554 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	35,119,813 - 35,124,187 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	35,124,670 - 35,129,068 (+)	NCBI
Celera	19	32,610,812 - 32,615,147 (+)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Elmo3	Rat	autosomal dominant dyskeratosis congenita 6		ISO	ELMO3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Dyskeratosis congenita and autosomal dominant 6	ClinVar	PMID:28492532
Elmo3	Rat	Chromosome 16q12 Duplication Syndrome		ISO	ELMO3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Chromosome 16q12 duplication syndrome	ClinVar	PMID:25741868

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Elmo3	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Elmo3 (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of ELMO3 mRNA	CTD	PMID:22206623
Elmo3	Rat	17alpha-ethynylestradiol	affects expression	ISO	Elmo3 (Mus musculus)	6480464	Ethinyl Estradiol affects the expression of ELMO3 mRNA	CTD	PMID:17555576
Elmo3	Rat	17alpha-ethynylestradiol	increases expression	EXP		6480464	Ethinyl Estradiol results in increased expression of ELMO3 mRNA	CTD	PMID:17557909
Elmo3	Rat	2,2',4,4',5,5'-hexachlorobiphenyl	multiple interactions	ISO	Elmo3 (Mus musculus)	6480464	[2 more ...	CTD	PMID:25510870
Elmo3	Rat	2,2',5,5'-tetrachlorobiphenyl	multiple interactions	ISO	Elmo3 (Mus musculus)	6480464	[2 more ...	CTD	PMID:25510870
Elmo3	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	Elmo3 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in decreased expression of ELMO3 mRNA	CTD	PMID:19770486
Elmo3	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of ELMO3 mRNA	CTD	PMID:32109520
Elmo3	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Elmo3 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of ELMO3 mRNA	CTD	PMID:21570461
Elmo3	Rat	aflatoxin B1	increases methylation	ISO	ELMO3 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of ELMO3 gene	CTD	PMID:27153756
Elmo3	Rat	amiodarone	increases expression	ISO	ELMO3 (Homo sapiens)	6480464	Amiodarone results in increased expression of ELMO3 mRNA	CTD	PMID:19774075
Elmo3	Rat	aristolochic acid A	increases expression	ISO	ELMO3 (Homo sapiens)	6480464	aristolochic acid I results in increased expression of ELMO3 mRNA	CTD	PMID:33212167
Elmo3	Rat	arsenite(3-)	decreases expression	ISO	Elmo3 (Mus musculus)	6480464	arsenite results in decreased expression of ELMO3 protein	CTD	PMID:37955338
Elmo3	Rat	atrazine	increases expression	EXP		6480464	Atrazine results in increased expression of ELMO3 mRNA	CTD	PMID:36841081
Elmo3	Rat	benzo[a]pyrene	decreases expression	ISO	ELMO3 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of ELMO3 mRNA	CTD	PMID:20106945
Elmo3	Rat	benzo[a]pyrene	affects methylation	ISO	ELMO3 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of ELMO3 promoter	CTD	PMID:27901495
Elmo3	Rat	benzo[a]pyrene	decreases methylation	ISO	ELMO3 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of ELMO3 exon	CTD	PMID:27901495
Elmo3	Rat	benzo[a]pyrene	increases expression	ISO	ELMO3 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of ELMO3 mRNA	CTD	PMID:26238291
Elmo3	Rat	benzo[a]pyrene	increases expression	ISO	Elmo3 (Mus musculus)	6480464	Benzo(a)pyrene results in increased expression of ELMO3 mRNA	CTD	PMID:22228805
Elmo3	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of ELMO3 mRNA	CTD	PMID:25181051 more ...
Elmo3	Rat	bisphenol A	increases expression	ISO	Elmo3 (Mus musculus)	6480464	bisphenol A results in increased expression of ELMO3 mRNA	CTD	PMID:34585602
Elmo3	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of ELMO3 gene	CTD	PMID:28505145
Elmo3	Rat	butan-1-ol	multiple interactions	ISO	ELMO3 (Homo sapiens)	6480464	[[Gasoline co-treated with 1-Butanol] results in increased abundance of [Particulate Matter co-treated with Polycyclic Aromatic Hydrocarbons]] which results in increased expression of ELMO3 mRNA	CTD	PMID:29432896
Elmo3	Rat	cadmium dichloride	decreases expression	ISO	ELMO3 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of ELMO3 mRNA	CTD	PMID:38568856
Elmo3	Rat	carbon nanotube	decreases expression	ISO	Elmo3 (Mus musculus)	6480464	Nanotubes and Carbon results in decreased expression of ELMO3 mRNA	CTD	PMID:25620056
Elmo3	Rat	chromium(6+)	affects expression	ISO	Elmo3 (Mus musculus)	6480464	chromium hexavalent ion affects the expression of ELMO3 mRNA	CTD	PMID:28472532
Elmo3	Rat	clofibrate	decreases expression	ISO	Elmo3 (Mus musculus)	6480464	Clofibrate results in decreased expression of ELMO3 mRNA	CTD	PMID:23811191
Elmo3	Rat	cobalt dichloride	decreases expression	EXP		6480464	cobaltous chloride results in decreased expression of ELMO3 mRNA	CTD	PMID:24386269
Elmo3	Rat	Cuprizon	increases expression	EXP		6480464	Cuprizone results in increased expression of ELMO3 mRNA	CTD	PMID:26577399
Elmo3	Rat	cyclosporin A	increases expression	ISO	ELMO3 (Homo sapiens)	6480464	Cyclosporine results in increased expression of ELMO3 mRNA	CTD	PMID:25562108
Elmo3	Rat	Dibutyl phosphate	affects expression	ISO	ELMO3 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of ELMO3 mRNA	CTD	PMID:37042841
Elmo3	Rat	diuron	decreases expression	EXP		6480464	Diuron results in decreased expression of ELMO3 mRNA	CTD	PMID:21551480
Elmo3	Rat	epoxiconazole	decreases expression	ISO	Elmo3 (Mus musculus)	6480464	epoxiconazole results in decreased expression of ELMO3 mRNA	CTD	PMID:35436446
Elmo3	Rat	ethanol	multiple interactions	ISO	ELMO3 (Homo sapiens)	6480464	[[Gasoline co-treated with Ethanol] results in increased abundance of [Particulate Matter co-treated with Polycyclic Aromatic Hydrocarbons]] which results in increased expression of ELMO3 mRNA	CTD	PMID:29432896
Elmo3	Rat	folic acid	multiple interactions	ISO	Elmo3 (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of ELMO3 mRNA	CTD	PMID:22206623
Elmo3	Rat	iron dichloride	decreases expression	ISO	ELMO3 (Homo sapiens)	6480464	ferrous chloride results in decreased expression of ELMO3 mRNA	CTD	PMID:35984750
Elmo3	Rat	methapyrilene	decreases expression	EXP		6480464	Methapyrilene results in decreased expression of ELMO3 mRNA	CTD	PMID:30467583
Elmo3	Rat	monosodium L-glutamate	increases expression	ISO	Elmo3 (Mus musculus)	6480464	Sodium Glutamate results in increased expression of ELMO3 mRNA	CTD	PMID:22078008
Elmo3	Rat	oxaliplatin	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in decreased expression of ELMO3 mRNA	CTD	PMID:25729387
Elmo3	Rat	oxaliplatin	decreases expression	EXP		6480464	oxaliplatin results in decreased expression of ELMO3 mRNA	CTD	PMID:25729387
Elmo3	Rat	ozone	multiple interactions	ISO	ELMO3 (Homo sapiens)	6480464	[Air Pollutants results in increased abundance of Ozone] which affects the expression of ELMO3 mRNA	CTD	PMID:35430440
Elmo3	Rat	paclitaxel	increases expression	ISO	ELMO3 (Homo sapiens)	6480464	Paclitaxel results in increased expression of ELMO3 protein	CTD	PMID:15907983
Elmo3	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of ELMO3 mRNA	CTD	PMID:33387578
Elmo3	Rat	PCB138	multiple interactions	ISO	Elmo3 (Mus musculus)	6480464	[2 more ...	CTD	PMID:25510870
Elmo3	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Elmo3 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Pectins] results in decreased expression of ELMO3 mRNA	CTD	PMID:36331819
Elmo3	Rat	sodium arsenite	increases expression	ISO	Elmo3 (Mus musculus)	6480464	sodium arsenite results in increased expression of ELMO3 mRNA	CTD	PMID:16322246
Elmo3	Rat	sodium arsenite	decreases expression	ISO	ELMO3 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of ELMO3 mRNA	CTD	PMID:38568856
Elmo3	Rat	sodium dichromate	affects expression	EXP		6480464	sodium bichromate affects the expression of ELMO3 mRNA	CTD	PMID:22110744
Elmo3	Rat	sunitinib	increases expression	ISO	ELMO3 (Homo sapiens)	6480464	Sunitinib results in increased expression of ELMO3 mRNA	CTD	PMID:31533062
Elmo3	Rat	tamoxifen	affects expression	ISO	Elmo3 (Mus musculus)	6480464	Tamoxifen affects the expression of ELMO3 mRNA	CTD	PMID:17555576
Elmo3	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of ELMO3 mRNA	CTD	PMID:23411599 and PMID:34492290
Elmo3	Rat	thiram	decreases expression	ISO	ELMO3 (Homo sapiens)	6480464	Thiram results in decreased expression of ELMO3 mRNA	CTD	PMID:38568856
Elmo3	Rat	topotecan	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in decreased expression of ELMO3 mRNA	CTD	PMID:25729387
Elmo3	Rat	triphenyl phosphate	affects expression	ISO	ELMO3 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of ELMO3 mRNA	CTD	PMID:37042841
Elmo3	Rat	trovafloxacin	increases expression	ISO	Elmo3 (Mus musculus)	6480464	trovafloxacin results in increased expression of ELMO3 mRNA	CTD	PMID:35537566
Elmo3	Rat	valproic acid	decreases expression	ISO	ELMO3 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of ELMO3 mRNA	CTD	PMID:29154799
Elmo3	Rat	valproic acid	affects expression	ISO	Elmo3 (Mus musculus)	6480464	Valproic Acid affects the expression of ELMO3 mRNA	CTD	PMID:17292431 and PMID:17963808
Elmo3	Rat	valproic acid	increases methylation	ISO	ELMO3 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of ELMO3 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Elmo3	Rat	actin filament organization	involved_in	IBA	FB:FBgn0032409 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Elmo3	Rat	apoptotic process	involved_in	IEA	UniProtKB-KW:KW-0053	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Elmo3	Rat	cell motility	involved_in	IBA	FB:FBgn0032409 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Elmo3	Rat	phagocytosis	involved_in	IEA	UniProtKB-KW:KW-0581	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Elmo3	Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Elmo3	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Elmo3	Rat	protein binding	enables	ISO	ELMO3 (Homo sapiens)	1624291	UniProtKB:O60242 and PMID:24567399	RGD	PMID:24567399
Elmo3	Rat	protein binding	enables	ISO	Elmo3 (Mus musculus)	1624291	UniProtKB:Q8BUR4 and PMID:15102471	RGD	PMID:15102471
Elmo3	Rat	SH3 domain binding	enables	IEA	UniProtKB-KW:KW-0729	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932

Elmo3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	50,091,883 - 50,096,324 (+)	NCBI		GRCr8
mRatBN7.2	19	33,181,952 - 33,186,399 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	33,182,036 - 33,186,410 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	39,997,640 - 40,002,003 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	40,650,959 - 40,655,322 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	42,939,898 - 42,944,261 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	37,260,330 - 37,264,832 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	37,260,469 - 37,264,829 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	48,126,191 - 48,130,554 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	35,119,813 - 35,124,187 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	35,124,670 - 35,129,068 (+)	NCBI
Celera	19	32,610,812 - 32,615,147 (+)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

ELMO3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	67,199,131 - 67,204,004 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	67,199,111 - 67,204,029 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	67,233,034 - 67,237,907 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	65,790,529 - 65,795,428 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	65,790,912 - 65,795,407	NCBI
Celera	16	51,741,260 - 51,746,159 (+)	NCBI		Celera
Cytogenetic Map	16	q22.1	NCBI
HuRef	16	53,106,204 - 53,111,104 (+)	NCBI		HuRef
CHM1_1	16	68,640,355 - 68,645,256 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	72,993,415 - 72,998,288 (+)	NCBI		T2T-CHM13v2.0

Elmo3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	106,032,240 - 106,036,625 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	106,032,233 - 106,037,392 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	105,305,461 - 105,310,623 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	105,305,601 - 105,310,760 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	107,829,501 - 107,834,523 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	108,194,738 - 108,199,889 (+)	NCBI		MGSCv36	mm8
Celera	8	109,528,749 - 109,533,772 (+)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI
cM Map	8	53.04	NCBI

Elmo3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	9,416,605 - 9,421,252 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955484	9,414,573 - 9,421,255 (-)	NCBI	ChiLan1.0	ChiLan1.0

ELMO3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	76,728,815 - 76,733,760 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	82,641,380 - 82,646,303 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	47,544,739 - 47,550,137 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	66,933,133 - 66,938,007 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	66,933,133 - 66,938,007 (+)	Ensembl	panpan1.1		panPan2

ELMO3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	82,164,588 - 82,169,014 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	82,164,629 - 82,170,450 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	82,154,034 - 82,158,629 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	82,599,715 - 82,604,310 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	82,599,756 - 82,605,577 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	82,425,812 - 82,430,407 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	82,111,360 - 82,115,955 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	82,750,634 - 82,755,229 (-)	NCBI		UU_Cfam_GSD_1.0

Elmo3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	41,914,097 - 41,918,598 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	17,670,517 - 17,675,039 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	17,670,651 - 17,677,367 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ELMO3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	27,841,624 - 27,846,330 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	27,841,559 - 27,846,332 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	25,130,914 - 25,135,708 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ELMO3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	60,253,105 - 60,257,804 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	60,253,252 - 60,257,478 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	23,005,165 - 23,009,821 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Elmo3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	19,112,808 - 19,117,494 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	19,112,808 - 19,117,406 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Elmo3
2 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	43
Count of miRNA genes:	40
Interacting mature miRNAs:	43
Transcripts:	ENSRNOT00000021362
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	2316121	47316121	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	1	36824771	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	29322490	57337602	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	15114598	34521833	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	1	36824771	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	15605023	46559041	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	24817978	39654489	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
1354633	Bw28	Body weight QTL 28	6.04		body mass (VT:0001259)	body weight (CMO:0000012)	19	27530207	37947399	Rat
724565	Tcas5	Tongue tumor susceptibility QTL 5	10.04		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	19	9977753	39654489	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	1	36824771	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	7457249	42983518	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	569374	45569374	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10827970	43544039	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	36824771	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
1354607	Gmadr1	Adrenal mass QTL 1	5.83		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	19	27530207	37947399	Rat
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	569374	45569374	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2187927	46708701	Rat
1354600	Salc2	Saline consumption QTL 2	9.91	0.001	drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	19	27530207	37947399	Rat

RH127566

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	33,181,504 - 33,181,684 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	37,259,938 - 37,260,117	NCBI	Rnor6.0
Rnor_5.0	19	48,125,660 - 48,125,839	UniSTS	Rnor5.0
RGSC_v3.4	19	35,119,282 - 35,119,461	UniSTS	RGSC3.4
Celera	19	32,610,281 - 32,610,460	UniSTS
RH 3.4 Map	19	360.81	UniSTS
Cytogenetic Map	19	q11	UniSTS

RH131523

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	33,186,165 - 33,186,366 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	37,264,599 - 37,264,799	NCBI	Rnor6.0
Rnor_5.0	19	48,130,321 - 48,130,521	UniSTS	Rnor5.0
RGSC_v3.4	19	35,123,954 - 35,124,154	UniSTS	RGSC3.4
RH 3.4 Map	19	363.01	UniSTS
Cytogenetic Map	19	q11	UniSTS

RH131578

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	33,188,378 - 33,188,537 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	37,266,810 - 37,266,968	NCBI	Rnor6.0
Rnor_5.0	19	48,132,532 - 48,132,690	UniSTS	Rnor5.0
RGSC_v3.4	19	35,126,165 - 35,126,323	UniSTS	RGSC3.4
Celera	19	32,616,981 - 32,617,139	UniSTS
RH 3.4 Map	19	363.91	UniSTS
Cytogenetic Map	19	q11	UniSTS

BI292813

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	19	50,096,603 - 50,096,767 (+)	Marker Load Pipeline
mRatBN7.2	19	33,186,678 - 33,186,842 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	37,265,112 - 37,265,275	NCBI	Rnor6.0
Rnor_5.0	19	48,130,834 - 48,130,997	UniSTS	Rnor5.0
RGSC_v3.4	19	35,124,467 - 35,124,630	UniSTS	RGSC3.4
RH 3.4 Map	19	276.21	UniSTS
Cytogenetic Map	19	q11	UniSTS

BE109595

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	33,181,773 - 33,181,924 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	37,260,207 - 37,260,357	NCBI	Rnor6.0
Rnor_5.0	19	48,125,929 - 48,126,079	UniSTS	Rnor5.0
RGSC_v3.4	19	35,119,551 - 35,119,701	UniSTS	RGSC3.4
Celera	19	32,610,550 - 32,610,700	UniSTS
RH 3.4 Map	19	363.91	UniSTS
Cytogenetic Map	19	q11	UniSTS

AA998249

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	33,181,552 - 33,181,692 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	37,259,986 - 37,260,125	NCBI	Rnor6.0
Rnor_5.0	19	48,125,708 - 48,125,847	UniSTS	Rnor5.0
RGSC_v3.4	19	35,119,330 - 35,119,469	UniSTS	RGSC3.4
Celera	19	32,610,329 - 32,610,468	UniSTS
RH 3.4 Map	19	361.22	UniSTS
Cytogenetic Map	19	q11	UniSTS

E2F4_601

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	33,181,030 - 33,181,826 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	37,259,464 - 37,260,259	NCBI	Rnor6.0
Rnor_5.0	19	48,125,186 - 48,125,981	UniSTS	Rnor5.0
RGSC_v3.4	19	35,118,808 - 35,119,603	UniSTS	RGSC3.4
Celera	19	32,609,807 - 32,610,602	UniSTS
Cytogenetic Map	19	q11	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001030028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097605	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021362 ⟹ ENSRNOP00000021362

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	33,182,036 - 33,186,410 (+)	Ensembl
Rnor_6.0 Ensembl	19	37,260,469 - 37,264,829 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097929 ⟹ ENSRNOP00000076644

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	33,182,036 - 33,186,410 (+)	Ensembl

RefSeq Acc Id:

NM_001030028 ⟹ NP_001025199

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,091,961 - 50,096,324 (+)	NCBI
mRatBN7.2	19	33,182,036 - 33,186,399 (+)	NCBI
Rnor_6.0	19	37,260,469 - 37,264,832 (+)	NCBI
Rnor_5.0	19	48,126,191 - 48,130,554 (+)	NCBI
RGSC_v3.4	19	35,119,813 - 35,124,187 (+)	RGD
Celera	19	32,610,812 - 32,615,147 (+)	NCBI

Sequence:

show sequence

GAGCCCGACCAGGAGTAGGAGCCTGAACTGTGAATGCAGGCCACCGAAGCCAGACTCTAGACAGAGGAAGGTCTTCCTAGACCCTAGATCAGTTGCACCCACGGCGGGAGGTGGCACGGCCACGGCGG
CTGGACTATGGCGCCCCCGCGGAATGTGGTGAAGATTGCCGTTCAGATGTCTGACGCCATCCCACAGCTTATCCAGCTAGACCAGGCAAAGCCCCTGGCCACTGTTCTGAAGGAGGTGTGTGACACGT
GGAGCCTGACTCATCCGGAGCACTATGCCCTTCAGTTTGCTGATGGGCACAGGAAATACATCACAGAGAATAACCGCTCGGAGATCAAGAATGGAAGCATCCTGTGCCTCAGTACTGCCCCAGATCTG
AAGGCCCAGCAGCTACTGAGTAGGCTGCAGAATGCGAGTCGTGAAGGGTGCTGTGAAGTCCTGAGAAACCTGGTCCCGCTGGCCTCAGACATGACCTTTGCCCAGGAGGTCATCAGTCGTGATGGGCT
TCAGAAATTAAGCACCATCATTGAAAATGGGGATGACCTAGGGGAGATGCTGGCCCTTGGGCTAAGGGCTTTCCTGGAGCTCATGGAACACGGAGTAGTGTCTTGGGAGACACTCAGCATTTCCTTTG
TCAGGAAGGTGGTATCTTATGTGAACATGAACTTGATGGATGCCTCTGTGCAGCCCCTGGCCCTCAGGCTACTGGAGAGTGTGACCCTGAGCAGCCCTACCCTGGGCCAGCTGGTGAAGAGTGAGGTG
CCACTAGACAGGCTGCTAGTGCACCTGCAGGTAATGAACCAGCAGCTGCAAACCAAGGCTATGGCACTGCTGACAGCCCTGCTGCAGGGGGCCAGCCCTGCTGAGCGTAAGGACATGCTTGACTGCCT
ATGGAAGAAGAATCTTCGCCAGTTCATCTACAAGAACATCATCCACAGTGCAGCACCCATGGGTGACGAGATGGCTCATCACTTGTATGTGCTGCAGGCTCTAACACTGGGGCTGCTGGAGCCACGTA
TGCGGACACCCCTTGATCCCTACAGCCAGGAGCAGCGGGAGCAGCTACAGGCCCTGCGCCAGGCAGCCTTTGAACCAGACGGGGAGTCCTTGGGCACAGGCCTGAGTGCTGACCGCCGCCGGTCTCTC
TGTGTCCGAGAGTTCCGCAAGCTAGGCTTCTCCAATAGCAGCCCGGCCCAGGACCTGGAACGTGTGCCCCCTGGCCTACTGGCCCTGGACAACATGCTCTACTTCTCCAGACATGCGCCTAGTGCATA
CAGTCGGTTCGTGTTGGAGAACAGTAGCCGAGAGGACAAGCATGAATGCCCCTTTGCCCGGAGCAGCATTCAGCTGACAGTGTTGCTGTGTGAGCTGCTCCATGTTGGGGAGCCTTGCTCCGAGACCG
CCCAGGACTTCTCACCCATGTTCTTCAGCCAAGACCACAGTTTCCATGAGCTCTTTTGTGTGGCTATCCAGCTGCTGAATAAGACCTGGAAGGAAATGCGGGCAACACAGGAGGATTTTGACAAGGTA
ATGCAGGTGGTTCGGGAACAGCTAGCCCGTACCCTGGCTCTGAAGCCCACCTCTCTGGAGCTCTTTCGAACCAAAGTAAATGCCCTCACCTATGGGGAAGTGTTGAGGCTGCGACAGACAGAGCGGCT
GCACCAAGAGGGCACATTGGCCCCTCCTATCTTGGAGCTCCGAGAGAAGCTGAAGCCAGAGCTCATGGGTTTAATCCGCCAGCAGCGTTTGCTCCGACTCTGTGAGGGAATGCTCTTCCGCAAGATCA
GCAGCCGGAGACGCCAGGACAAGCTATGGTTTTGCTGTTTATCCCCCAACCATAAAGTACTGCAGTATGGCGATGTGGAGGAGGGCGCCAACCCTCCCACCTTAGAAAGCCTAACTGAACAACTCCCT
GTGGCTGACATCAGGGCACTCCTAATGGGCAAGGACTGCCCCCATGTCCGGGAGAAGGGCTCTGGGAAGCAGAACAAGGACCTCTATGAGTTGGCCTTCTCCATCAGCTATGACCATGGGGAGGAAGA
AGCATACCTCAACTTCATTGCCCCCTCCAAACGGGATTTCTACCTGTGGACAGATGGACTGAGTGCCCTGCTGGGCAGTACTATGGGGAGTGAACAGACTCGGCTAGACCTGGAGCAGCTGCTCACTA
TGGAGACCAAGTTGCGGTTGTTGGAACTGGAGAATGTGCCCATTCCTGAGCATCCTCCCCCAGTACCCCCACCTCCTACCAACTTTAACTTCTGCTATGACTACAGCATGACTGAGCCTTGACTGAAG
TTAGGCTACAGTTGATACTGCTGTAGCAGCCACAAAAAGGGTTGAGAATCACAGACAGCCTGACCAGAGCCTGTAGCAGAAATAAAGTTACCTTTGCTTATAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039097605 ⟹ XP_038953533

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,091,883 - 50,096,324 (+)	NCBI
mRatBN7.2	19	33,182,107 - 33,186,399 (+)	NCBI

RefSeq Acc Id:

XM_039097606 ⟹ XP_038953534

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,091,883 - 50,095,760 (+)	NCBI
mRatBN7.2	19	33,181,952 - 33,185,835 (+)	NCBI

RefSeq Acc Id:

XR_005496633

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,091,883 - 50,095,887 (+)	NCBI
mRatBN7.2	19	33,181,952 - 33,185,967 (+)	NCBI

RefSeq Acc Id:

XR_005496634

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,091,883 - 50,096,046 (+)	NCBI
mRatBN7.2	19	33,181,952 - 33,186,122 (+)	NCBI


Protein RefSeqs	NP_001025199	(Get FASTA)	NCBI Sequence Viewer
	XP_038953533	(Get FASTA)	NCBI Sequence Viewer
	XP_038953534	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99761	(Get FASTA)	NCBI Sequence Viewer
	EDL92365	(Get FASTA)	NCBI Sequence Viewer
	EDL92366	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021362
	ENSRNOP00000021362.6
	ENSRNOP00000076644
GenBank Protein	Q499U2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001025199 ⟸ NM_001030028

- UniProtKB:

Q499U2 (UniProtKB/Swiss-Prot), A0A8I5YBT5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAPPRNVVKIAVQMSDAIPQLIQLDQAKPLATVLKEVCDTWSLTHPEHYALQFADGHRKYITENNRSEIKNGSILCLSTAPDLKAQQLLSRLQNASREGCCEVLRNLVPLASDMTFAQEVISRDGLQK
LSTIIENGDDLGEMLALGLRAFLELMEHGVVSWETLSISFVRKVVSYVNMNLMDASVQPLALRLLESVTLSSPTLGQLVKSEVPLDRLLVHLQVMNQQLQTKAMALLTALLQGASPAERKDMLDCLWK
KNLRQFIYKNIIHSAAPMGDEMAHHLYVLQALTLGLLEPRMRTPLDPYSQEQREQLQALRQAAFEPDGESLGTGLSADRRRSLCVREFRKLGFSNSSPAQDLERVPPGLLALDNMLYFSRHAPSAYSR
FVLENSSREDKHECPFARSSIQLTVLLCELLHVGEPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEMRATQEDFDKVMQVVREQLARTLALKPTSLELFRTKVNALTYGEVLRLRQTERLHQ
EGTLAPPILELREKLKPELMGLIRQQRLLRLCEGMLFRKISSRRRQDKLWFCCLSPNHKVLQYGDVEEGANPPTLESLTEQLPVADIRALLMGKDCPHVREKGSGKQNKDLYELAFSISYDHGEEEAY
LNFIAPSKRDFYLWTDGLSALLGSTMGSEQTRLDLEQLLTMETKLRLLELENVPIPEHPPPVPPPPTNFNFCYDYSMTEP

hide sequence

Ensembl Acc Id:

ENSRNOP00000021362 ⟸ ENSRNOT00000021362

RefSeq Acc Id:	XP_038953534 ⟸ XM_039097606
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038953533 ⟸ XM_039097605
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5YBT5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000076644 ⟸ ENSRNOT00000097929

Protein Domains

ELMO PH

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q499U2-F1-model_v2	AlphaFold	Q499U2	1-720	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13701070

Promoter ID:

EPDNEW_R11594

Type:

initiation region

Name:

Elmo3_1

Description:

engulfment and cell motility 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	37,260,447 - 37,260,507	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-5842	BioCyc
Ensembl Genes	ENSRNOG00000015800	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000021362	ENTREZGENE
	ENSRNOT00000021362.7	UniProtKB/Swiss-Prot
	ENSRNOT00000097929	ENTREZGENE
Gene3D-CATH	1.25.10.10	UniProtKB/Swiss-Prot
	2.30.29.30	UniProtKB/Swiss-Prot
	6.10.250.810	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7930411	IMAGE-MGC_LOAD
InterPro	ARM-like	UniProtKB/Swiss-Prot
	ARM-type_fold	UniProtKB/Swiss-Prot
	DUF3361	UniProtKB/Swiss-Prot
	ELMO_dom	UniProtKB/Swiss-Prot
	ELMO_domain-containing	UniProtKB/Swiss-Prot
	PH-like_dom_sf	UniProtKB/Swiss-Prot
	PH_domain	UniProtKB/Swiss-Prot
KEGG Report	rno:291962	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124673	IMAGE-MGC_LOAD
NCBI Gene	291962	ENTREZGENE
PANTHER	ENGULFMENT AND CELL MOTILITY	UniProtKB/Swiss-Prot
	PTHR12771:SF16	UniProtKB/Swiss-Prot
Pfam	DUF3361	UniProtKB/Swiss-Prot
	ELMO_CED12	UniProtKB/Swiss-Prot
	PH_12	UniProtKB/Swiss-Prot
PhenoGen	Elmo3	PhenoGen
PROSITE	ELMO	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000015800	RatGTEx
Superfamily-SCOP	PH domain-like	UniProtKB/Swiss-Prot
	SSF48371	UniProtKB/Swiss-Prot
UniProt	A0A8I5YBT5	ENTREZGENE, UniProtKB/TrEMBL
	A6IYN8_RAT	UniProtKB/TrEMBL
	ELMO3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-28	Elmo3	engulfment and cell motility 3	Elmo3	engulfment and cell motility 3, ced-12 homolog (C. elegans)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Elmo3	engulfment and cell motility 3, ced-12 homolog (C. elegans)	Elmo3_predicted	engulfment and cell motility 3, ced-12 homolog (C. elegans) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Elmo3_predicted	engulfment and cell motility 3, ced-12 homolog (C. elegans) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar