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Gene: Ep400 (E1A binding protein p400) Rattus norvegicus

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Symbol:

Ep400

Name:

E1A binding protein p400

RGD ID:

1304733

Description:

Enables chromatin binding activity and protein antigen binding activity. Predicted to be involved in DNA repair; positive regulation of double-strand break repair via homologous recombination; and regulation of cell cycle. Predicted to be located in nuclear speck. Predicted to be part of NuA4 histone acetyltransferase complex; Swr1 complex; and nucleosome. Orthologous to several human genes including EP400 (E1A binding protein p400); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

E1A-binding protein p400; LOC304569

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EP400 (E1A binding protein p400)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Ep400 (E1A binding protein p400)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ep400 (E1A binding protein p400)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LOC100971447 (E1A-binding protein p400)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EP400 (E1A binding protein p400)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ep400 (E1A binding protein p400)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EP400 (E1A binding protein p400)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EP400 (E1A binding protein p400)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ep400 (E1A binding protein p400)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ep400 (E1A binding protein p400)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	EP400 (E1A binding protein p400)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ep400 (E1A binding protein p400)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	EP400P1 (EP400 pseudogene 1)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Danio rerio (zebrafish):	ep400 (E1A binding protein p400)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	dom	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector)
Drosophila melanogaster (fruit fly):	dom	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	ep400	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ep400	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100145162	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	51,551,665 - 51,658,635 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	51,551,695 - 51,658,634 (+)	Ensembl				GRCr8
mRatBN7.2	12	45,891,886 - 46,002,523 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	45,891,916 - 45,998,861 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	47,067,366 - 47,174,430 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	47,672,836 - 47,779,786 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	46,733,363 - 46,840,311 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	51,948,650 - 52,055,274 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	51,948,650 - 52,055,271 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	53,687,001 - 53,793,502 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	46,036,453 - 46,143,426 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	47,451,324 - 47,557,941 (+)	NCBI		Celera
RGSC_v3.1	12	45,912,224 - 46,007,557 (+)	NCBI
Cytogenetic Map	12	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

5-fluorouracil (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

chloroacetaldehyde (ISO)

chlorpyrifos (ISO)

cidofovir anhydrous (ISO)

cisplatin (ISO)

clodronic acid (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

dioxygen (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenofibrate (EXP)

fenthion (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

glyphosate (EXP)

ifosfamide (ISO)

indometacin (ISO)

metformin (EXP)

methamphetamine (ISO)

methapyrilene (ISO)

methidathion (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

ozone (ISO)

paracetamol (ISO)

parathion (ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

propiconazole (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

thapsigargin (ISO)

thimerosal (ISO)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

torcetrapib (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

vinclozolin (EXP)

vorinostat (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

chromatin organization (IEA)

DNA repair (IBA)

gene expression (ISO)

nervous system development (IEA,ISO)

positive regulation of double-strand break repair via homologous recombination (IEA,ISO)

regulation of cell cycle (IEA,ISO)

Cellular Component

NuA4 histone acetyltransferase complex (IBA,IEA,ISO)

nuclear speck (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleosome (IEA,ISO)

nucleus (IEA)

Swr1 complex (IBA,IEA,ISO)

Molecular Function

ATP binding (IEA)

chromatin binding (IBA,IDA)

DNA binding (IEA)

helicase activity (IEA)

hydrolase activity (IEA)

nucleotide binding (IEA)

protein antigen binding (IPI)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

INO80 family mediated chromatin remodeling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	MYC recruits the TIP60 histone acetyltransferase complex to chromatin.	Frank SR, etal., EMBO Rep 2003 Jun;4(6):575-80.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	p300 family members associate with the carboxyl terminus of simian virus 40 large tumor antigen.	Lill NL, etal., J Virol. 1997 Jan;71(1):129-37.
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics.	Watanabe S and Peterson CL, Cold Spring Harb Symp Quant Biol. 2010;75:35-42. doi: 10.1101/sqb.2010.75.063. Epub 2011 Apr 18.

Additional References at PubMed

PMID:12477932	PMID:14966270	PMID:18758164	PMID:24463511

Genomics

Comparative Map Data

Ep400
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	51,551,665 - 51,658,635 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	51,551,695 - 51,658,634 (+)	Ensembl				GRCr8
mRatBN7.2	12	45,891,886 - 46,002,523 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	45,891,916 - 45,998,861 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	47,067,366 - 47,174,430 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	47,672,836 - 47,779,786 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	46,733,363 - 46,840,311 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	51,948,650 - 52,055,274 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	51,948,650 - 52,055,271 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	53,687,001 - 53,793,502 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	46,036,453 - 46,143,426 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	47,451,324 - 47,557,941 (+)	NCBI		Celera
RGSC_v3.1	12	45,912,224 - 46,007,557 (+)	NCBI
Cytogenetic Map	12	q16	NCBI

EP400
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	131,949,942 - 132,080,460 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	131,949,931 - 132,080,460 (+)	Ensembl			hg38	GRCh38
GRCh37	12	132,434,487 - 132,565,005 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	131,000,461 - 131,130,958 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	131,100,737 - 131,231,235	NCBI
Celera	12	132,044,667 - 132,183,581 (+)	NCBI		Celera
Cytogenetic Map	12	q24.33	NCBI
HuRef	12	129,320,249 - 129,451,108 (+)	NCBI		HuRef
CHM1_1	12	132,255,426 - 132,385,890 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	131,997,993 - 132,129,300 (+)	NCBI		T2T-CHM13v2.0

Ep400
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	110,812,239 - 110,918,583 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	110,812,239 - 110,918,583 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	110,664,373 - 110,770,927 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	110,664,373 - 110,770,717 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	111,093,392 - 111,199,736 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	110,904,680 - 111,010,829 (-)	NCBI		MGSCv36	mm8
Celera	5	107,796,354 - 107,902,745 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	53.69	NCBI

Ep400
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	641,214 - 746,331 (-)	Ensembl
ChiLan1.0	NW_004955482	639,316 - 746,331 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100971447
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	140,044,427 - 140,175,573 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	140,040,944 - 140,172,090 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	129,606,823 - 129,737,179 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	134,038,649 - 134,165,972 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	134,045,829 - 134,163,185 (+)	Ensembl			panPan2	panpan1.1

EP400
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	848,028 - 951,135 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	848,016 - 951,171 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	891,892 - 994,891 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	908,308 - 1,012,899 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	908,316 - 1,002,145 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	847,101 - 950,037 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	943,700 - 1,046,650 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	866,837 - 969,806 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ep400
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	122,423,350 - 122,516,897 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936660	2,212,243 - 2,295,862 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936660	2,212,063 - 2,297,730 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EP400
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	23,289,244 - 23,396,656 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	23,286,938 - 23,396,316 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	24,748,388 - 24,847,868 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EP400
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	127,335,371 - 127,461,564 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	127,335,492 - 127,461,796 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	117,487,686 - 117,624,887 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ep400
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	27,709,216 - 27,815,641 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624747	27,709,215 - 27,815,642 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ep400
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	43,574,097 - 43,680,770 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	554
Count of miRNA genes:	245
Interacting mature miRNAs:	320
Transcripts:	ENSRNOT00000056735
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24805022	52308831	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	25989355	52308831	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	37764145	51558799	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	33700432	51558799	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
631543	Bp83	Blood pressure QTL 83	5.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	44139558	52308831	Rat

Markers in Region

D12Rat22

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	12	51,558,617 - 51,558,799 (+)	Marker Load Pipeline
mRatBN7.2	12	45,898,838 - 45,899,022 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	51,955,573 - 51,955,754	NCBI	Rnor6.0
Rnor_5.0	12	53,693,924 - 53,694,105	UniSTS	Rnor5.0
RGSC_v3.4	12	46,043,376 - 46,043,557	UniSTS	RGSC3.4
RGSC_v3.4	12	46,043,375 - 46,043,557	RGD	RGSC3.4
Celera	12	47,458,247 - 47,458,428	UniSTS
RGSC_v3.1	12	45,907,502 - 45,907,684	RGD
RH 3.4 Map	12	794.1	UniSTS
RH 3.4 Map	12	794.1	RGD
RH 2.0 Map	12	582.4	RGD
SHRSP x BN Map	12	54.0099	RGD
Cytogenetic Map	12	q16	UniSTS

RH128316

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	45,998,650 - 45,998,842 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	52,055,061 - 52,055,252	NCBI	Rnor6.0
Rnor_5.0	12	53,793,288 - 53,793,479	UniSTS	Rnor5.0
RGSC_v3.4	12	46,143,216 - 46,143,407	UniSTS	RGSC3.4
Celera	12	47,557,731 - 47,557,922	UniSTS
RH 3.4 Map	12	798.8	UniSTS
Cytogenetic Map	12	q16	UniSTS

RH143676

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	45,998,487 - 45,998,614 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	52,054,898 - 52,055,024	NCBI	Rnor6.0
Rnor_5.0	12	53,793,125 - 53,793,251	UniSTS	Rnor5.0
RGSC_v3.4	12	46,143,053 - 46,143,179	UniSTS	RGSC3.4
Celera	12	47,557,568 - 47,557,694	UniSTS
RH 3.4 Map	12	801.3	UniSTS
Cytogenetic Map	12	q16	UniSTS

AU047626

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	45,931,231 - 45,931,386 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	51,987,967 - 51,988,121	NCBI	Rnor6.0
Rnor_5.0	12	53,726,318 - 53,726,472	UniSTS	Rnor5.0
RGSC_v3.4	12	46,075,766 - 46,075,920	UniSTS	RGSC3.4
Celera	12	47,490,153 - 47,490,307	UniSTS
Cytogenetic Map	12	q16	UniSTS

RH140195

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	12	51,658,053 - 51,658,253 (+)	Marker Load Pipeline
mRatBN7.2	12	45,998,280 - 45,998,480 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	52,054,691 - 52,054,890	NCBI	Rnor6.0
Rnor_5.0	12	53,792,918 - 53,793,117	UniSTS	Rnor5.0
RGSC_v3.4	12	46,142,846 - 46,143,045	UniSTS	RGSC3.4
Celera	12	47,557,361 - 47,557,560	UniSTS
RH 3.4 Map	12	801.1	UniSTS
Cytogenetic Map	12	q16	UniSTS

RH141236

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	45,908,680 - 45,908,881 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	51,965,412 - 51,965,612	NCBI	Rnor6.0
Rnor_5.0	12	53,703,763 - 53,703,963	UniSTS	Rnor5.0
RGSC_v3.4	12	46,053,215 - 46,053,415	UniSTS	RGSC3.4
Celera	12	47,467,641 - 47,467,841	UniSTS
Cytogenetic Map	12	q16	UniSTS
Cytogenetic Map	4	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000056735 ⟹ ENSRNOP00000053578

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	51,551,695 - 51,658,634 (+)	Ensembl
mRatBN7.2 Ensembl	12	45,891,916 - 45,998,861 (+)	Ensembl
Rnor_6.0 Ensembl	12	51,948,650 - 52,055,271 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084214 ⟹ ENSRNOP00000068916

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	51,552,236 - 51,658,634 (+)	Ensembl
mRatBN7.2 Ensembl	12	45,892,345 - 45,998,861 (+)	Ensembl
Rnor_6.0 Ensembl	12	51,960,262 - 52,054,108 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095891 ⟹ ENSRNOP00000083470

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	51,552,236 - 51,658,634 (+)	Ensembl
mRatBN7.2 Ensembl	12	45,892,345 - 45,998,861 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118850 ⟹ ENSRNOP00000081678

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	51,551,695 - 51,658,634 (+)	Ensembl
mRatBN7.2 Ensembl	12	45,891,916 - 45,998,861 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000159063 ⟹ ENSRNOP00000099488

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	51,552,099 - 51,581,349 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162783 ⟹ ENSRNOP00000100170

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	51,551,695 - 51,658,634 (+)	Ensembl

RefSeq Acc Id:

NM_001107149 ⟹ NP_001100619

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,695 - 51,658,634 (+)	NCBI
mRatBN7.2	12	45,891,916 - 45,998,861 (+)	NCBI
Rnor_6.0	12	51,948,650 - 52,055,271 (+)	NCBI
Rnor_5.0	12	53,687,001 - 53,793,502 (+)	NCBI
RGSC_v3.4	12	46,036,453 - 46,143,426 (+)	RGD
Celera	12	47,451,324 - 47,557,941 (+)	RGD

Sequence:

show sequence

CCCGCGGACCCGGATGCGCCGAGCGGCTGCGGCGCGCTCGAGCCTCCGGGCTGTCCTGACGCGG
CGGAGCGCGGCTCGCGGTGCAAGTGAACCGGACAGCGTCAGCGGGGGGAACATTACATTGGATA
GAAAAGGGAGGTGATAATGCACCATGGCAGTGGTCCTCAGAATGTCCAGCATCAGCTGCAGAGA
TCTAGGTCCTTCACTGGGAGTGAAGAGGAGCAACCAGCCCATCCCAACTTACCCCCATCTCCTG
CAGCACCTTTCGCTCCATCAGCCAGCCCATCTGCACCCCAATCCCCTGGGTACCAGATACAGCA
GCTGATGAGCAGAAGTCCTGTGGCCGGGCAGAATGTGAACATCACACTGCAGAATGTTGGCCCA
GTCGTGGGAGGAAACCAGCAGATCACACTGGCCCCTTTGCCACTGCCCAACCCTACCTCTCCAG
GTTTTCAGTTTGGTGCACAGCAGAGGCGCTTTGAGCATGGCTCTCCATCATACATTCAAGTTAC
TTCTCCGCTGTCGCAGCAGGTCCAGACTCAAAGCCCCACACAGCCTAACCCCGGGCCAGGGCAA
ACCCTGCAGAATGTGCGTGCAGGTGCCCCAGGCCCTGGGCTGGGTATCTGCAGCAGCAGCCCCA
CTGGAGGATTTGTGGATGCCAGTGTGCTTGTGAGGCAGATCAGCTTGAGTCCATCAAGTGGTGG
TCACTTTGTATTTCAGGAGGCACCAGGCCTGACTCAGATGGCCCAGGGAGCCCAGGTTCAACTC
CAGCATTCAGGAGCTCCCATCACAGTCCGAGAACGGAGACTCTCCCAACCTCATGCACAATCGG
GAGGCACCATCCACCATCTAGGGCCTCAGAGCCCTGCAACTGCAGGAGGTACTGGACTGCAACC
TCTGGCCAGCCCGAACCACATCACCACGGCCAGTCTGCCACCCCAGATCAGCAGCATTATTCAG
GGTCAGTTGATACAGCAACAGCAGCAGGTGCTTCAGGGGCAGCCAATGAACAGATCTCTGGGAT
TTGAGAGGACACCTGGCGTGTTGCTCCCTGGCGTAGGAGGACCTTCAGCATTTGGGATGACATC
CCCACCGCCACCCACCAGCCCTTCCAGAACTACCATGCCTCCAGGCCTTTCCAGTGTGCCTCTT
ACATCTATGGGAAGCTCAGGAATAAAGAAGGTTCCCAAGAAGTTGGAGGAGATTCCCCCAGCCT
CCCAAGAGATGGCACAGATGAGGAAGCAGTGCCTGGACTACCACTACAAGGAAATGGAGGCACT
CAAGGAAGTCTTTAAGGAGTACCTGATTGAACTGTTCTTCTTGCAACATCTACAGGGGAACATG
ATGGATTTCTTGGCTTTTAAAAAGAAGCACTATGCCCCTTTACAAGCATATCTTAGGCAGAATG
ATTTGGACATTGAAGAGGAGGAGGAAGAAGAGGAAGAGGAGGAAGAAAAATCTGAAGTTATCAA
TGATGAGCACCAAGCCCTGACTGGGAGCCTAGTGGTGGGGCCTGGCAGTACCACAGAAGCTGAC
CCCTTTAAGAGGCAACAGGTGATGCCACCCACAGAGCAGTCTAAGAGACCTCGTCTTGAAGTGG
GTCATCCAGGGGTAGTTTTCCAGCATCCAGGGGTGAATGCAGGAGTCCCTCTGCAGCAGTTAAT
GCCAACAGTCCAAGGAGGGATGCCTCCAACTCCTCAGGCCACACAGCTTACTGGACAGAAGCAG
AGCCAGCAGCAGTACGACCCTTCCACAGGGCCTCCTGTGCAGAACGCCGCCAGTTTGCATACCC
CACCACCACAGCTCCCTGCGAGGCTGCCTCCGGCCAGTGTCCCAGCCACAGCCCTCCCTTCCAC
CTTACAGTTTTCACAGCAGTCACAGATGGTGGAGGCTCCAACTCAGCTCCAAATCCCAGTGAAG
ACTCAACAGCTAAATGCCCCTATCCCTGCCCCCCTGCCCAGCCAGCTCCCTGCTCCTTCTTCAC
AGCCCGCCCAGCCGGCCCTACATGTTTCGATGCCCGGGAAGGCGCAGATGCAGACCTCTCAGCT
TTCCTCCCAGACTCAGACAGTGGCATCGACCAGGCCCCCCTTGGAGTCTGCCCAGCCCTGCCAG
AGGTCTCTGCCCACTTCTTCCTCTTCCTCATCCCTTGTACCTGTGAGTGGCTCAGGCCCTGGAC
CCTCGCCTGCTCGTTCTTCACCAGTGAACAGACCCTCTTCTGCCACCAACAAAGCTCTGTCTCC
TGTCACTTCTCGGTCTCCAGGGGTAGCAGTATCAGCTCCCCCTAAGCCACAGAGTCCTGCTCAG
AATGCAGCCTCATCCCAGGATGGTTCTCAGGACAAGCTGGCAGAACAAATAACACTGGAAAACC
AGATCCATCAGCGAATAGCAGATTTAAGGAAGGAAGGCTTGTGGTCCCTAAGGCGACTGCCAAA
GCTTCAAGAGGCCCCACGCCCAAAATCTCACTGGGACTATCTGTTGGAAGAGATGCAGTGGATG
GCCACAGACTTTGCCCAAGAGCGGAGGTGGAAGTTGGCTGCTGCTAAAAAGCTTGTTAGAACTG
TGGCCCGGCACCATGAGGAAAAGAAACTTCGTGAGGAAAGAGGGAAGAAGGAAGAACAGAGCAG
ACTGAGGCGCATTGCTGCTACCACTGCGCGAGAAATAGAATATTTCTGGTCAAATATTGAACAG
GTTGTGGAAATAAAACTACAAGTAGAATTAGAAGAGAAAAGGAAAAAAGCCTTAAATTTACAGA
AAGTTTCCAGAAGAGGGAAAGAGTCCAGATTAAAGGGATTCGATACATCACCAGAACACTCTAT
GGATCTAGGAATATCTGGAAGGAAAAGAAAAGCTAGCACATCTTTGACTGATGATGAAGTGGAA
GATGAAGAAGAGACCATTGAAGAGGAAGAAGCACATGAAGGGCTTGTAGACCACCACACAGAAC
TTTCTAATCTGGCCAAAGAAGCTGAGTTGCCCTTAATTGATTTGATGAAGTTGTATGAAGGTGC
CTTTCTGCCAAATTTTCAGTGGCCGCAGCCTGAACCTGATCATGAAGAATCAAGTGGGGAAGAA
GATGCAGAAGACTGTCCTAGTGACAGGGAGAGCCGGAGGGACTCCGTTCTCATCGATTCGCTCT
TCATCATGGACCAGTTTAAAGCTGCAGAGAGAATGAGCATTGGAAAATCCAACACCAAGGACAT
CACAGAAGTTACTGCTGTGGCTGAAGCCATCCTCCCTAAGGGCAGTGCCCGAGTCACAACTGCG
GTGAAGTTTAGTGCTCCATCTTTGTTGTATGGTGCTCTCCGAGACTATCAGAAGATAGGCCTTG
ACTGGTTGGCCAAACTATACCGGAAGAATCTCAATGGCATATTAGCTGATGAAGCAGGGCTTGG
GAAAACTGTGCAGATCATTGCTTTTTTTGCCCACCTTGCCTGTAATGAAGGTAATTGGGGCCCT
CATCTTGTTGTCATGAGGAGTTGTAACATACTCAAGTGGGAACTCGAGTTGAAACGCTGGTGTC
CTGGCCTCAAAACTCTTTCTTATGTTGGCACCCACAGAGAACTCAAAGCAAAGAGACAGGAGTG
GACCGAGCCCAATAACTTCCACATCTGCATCACGTCCTATAAGCAGTTCTTCAGGGGCTACACT
GCCTTCTCAAGAGTGCACTGGAAATGCCTTGTTGTTGATGAAATGCAGCGAGTGAAGGGCATGA
CTGAGCGGCACTGGGAAGCCATCTTCAAGCTGCAGAGCCAGCAGCGCCTGCTTCTCATCGATGT
ACCTCTGCACAACACTTTCCTGGAGCTTTGGACCATGGTACACTTTCTCATTCCTGGAATCTCC
AGGCCTTACCTGAGCTTTCCCCTGAAAGCTCCCAATGAGGAAAACCAGGATTACTATCACAAAA
TGGTCATACGATTACACAGGGTCACACAGCCATTTATTTTGAGGAGAACCAAGAGAGATGTGGA
GAAACAGCTAACCAGGAAGTATGAGCATGTTCTGAAGTGCCGCCTTTCCAGTCGACAGAAGGCC
TTATATGAGGATGTCATTCTACAGCCTAGGACTCAGGAAGCTCTGAAGAGTGGGCACTTTGTCA
GTGTCTTGAGTGTCCTGACACGGCTACAGCGAATCTGCAACCATCCTGGACTAGTGGAGCCACG
GGTACCAGGCTCCTCCTATGCAGCAGGCTCTCTGCAGTATAAGTCAGCCTCTCTAATTCTCAGA
GTTCTGGAGAGAGAGTTCTGGAAGGAAACCGATCTTTCTATGTTTGATCTCATTGGGCTAGAAA
ATAAAATCTCTCGCCATGAGGCTGAATTATTGTATAAGAAAAAAGTGACTCGGAAACTCATGGA
AGAAGTCTTTACTTCACCTCCTCCATCAGCCCGGCCAGCAGCGGTGAAGCTCAAGGCCAGCAGG
TTATTTCAGCCTGTGCAGTATGGCCAGAAGCCTGAGGGTCGCACCGTGGCATTCCCCAGCACAC
ATCCACCTCGGATGGCAAACACCAATGCATCAACTGCTACTCCACAGGGCCAGGTTCGAGGACG
GCCACCAATTGCTACTTTCTCTGCCAATCCAGATACAAAAGGTGGGGAAGTAGTGAAAATAGCT
CAGCTGGCGTCCATTGCAGGGCCACAGAGCCGTGTGGCCCAGCCAGAGACACCTGTGACACTGC
AGTTCCAAGGGAACAAATTTACCTTGTCACATAGCCAGCTGCGACAGCTCACAGCAGGCCAGCC
TCTGCAGCTGCAAGGTAGCGTACTCCAGATCGTGTCAGCCCCTGGGCAGCCCTACCTGCGAGCC
CCTGGCCCCGTGGTGATGCAGACTGTGTCTCAGGCAGGCGCTGTGCATAGCACCCTGGGAAGCA
AGCCCCCAACCAGTGGCCCCAGCCCTGCACCCTTGAGCACACAAGTTGGTGTTCCTGGTCGAGT
AGCAGTGAGTGCTATGGCTGTTGGGGAACCTGGCCTGGCTTCCAAACCAGCTTCTCCTGCTGCA
GGGCCAACCCAGGAGGAGAAGAGCAGACTTTTGAAGGAACGATTGGATCAGATTCATTTTATCA
ATGAGCGGCGTTGTTCCCAGGCTCCAGTGTATGGTAGAGACTTGCTGAGGATCTGTTCCTTGCC
TGGAAGAAGGAAGAGGCCTTTGTGCTGGTCTTTGGATAGCAACCTTGGGAAGGGTCCTAAAGGA
GCAGACTATGACACGTCACTCTCAAAAAGTGAAGGTGATCTGATTTTGACGTTGAGTCAGCGCC
AAGAGTCTCTTCAAGATGTTCTTGACAGGGTGGCCTGTGTGATTCCTCCAGTGGTGGCTACACC
ACCCTCCCTGTGGGTCGAGAGGCCGCCCTCACTGTATAGCAGCAGGTTGAGAGCTCTGAGGCAG
TGCCTGAGAGAGCACACCGGCCCTTACCACCGACAGCTGCAACAGCTAACAGCACTGCGCTCAC
TGCAGTTTCCGGAGCTGAGGCTGGTGCAGTTTGACTCAGGAAAGTTAGAAGCTTTAGCAATCCT
GCTACAAAAACTGAAATCTGAAGGACGCCGGGTGCTGATTTTATCTCAGATGGTTCTTATGCTG
GACATTTTAGAGATGTTCTTGAACTTCCATTATCTCACCTATGTACGGATTGATGAAAATGCCA
ACAGTGAACAACGACAGGAGCTGATGAGGAGTTTCAACAGAGACAGGCGGATTTTCTGTGCCCT
TCTCTCCACCCATAGCCGTGCCACTGGCATAAACCTTGTTGAGGCTGACACTGTGGTGTTTTAT
GACAATGACCTAAATCCAGTTATGGATGCCAAAGCCCAGGAGTGGTGTGATAGAATTGGGAGGT
GCAAGGACATCCACATATACAGGCTTGTCAGTGGCAATTCTATTGAAGAGAAGTTGTTAAAAAA
TGGAACTAAAGATTTGATCCGGGAAGTAGCTGCTCAGGGAAATGACTACTCGATGGCATTCTTA
ACTCAGCGAACTATCCAGGAGCTGTTTGAAGTCTACTCACCTATGGATGATGCTGGCTTTCCAG
TGAAAGCTGAGGAATTTGTGGTGCTTTCTCAGGAACCATCTGTCAGCGAAACCATCGCACCCAA
GATTGCAAGACCTTTCATAGAGGCCCTCAAGAGCATCGAGTGTCTGGAGGAGGATGCGCAGAGG
TCCACAGAGGAAGCTGTGCCTGGATCCAGCACTGTAGCTGTGTCCTCAGACTCAGACGGCTCTA
GATACGATGAGGAACCATCACAGCTAGAGGAGCTGGCTGACTTTATGGAACAGCTTACACCAAT
TGAAAAATATGCATTGAATTACTTGGAATTGTTCCATACGACCACTGAACAAGAAAAAGAGAGA
AGCAGTGAGGATTTGGTGATGGCAACAATGAAGGACTGGGAAACCCGCAATGCTAGAGCCCTGC
AGGAAAGGGAGGCCCAGCTGCAGCTGGAGCAGGAGGAAGCAGAGCTTCTCACCTACACTCGGGA
GGATGCCTATAGCATGGAATATGTCTATGAAGATGCTGATGGACAAACAGAAGTCATGCCGCTC
TGGACACCGCCCACCCCTCCTCAGGATGACAATGATATCTACATTGACTCAGTTATGTGTCTCA
TGTATGAAACCACACCTATCCCAGAAGCTAAGCTGCCTCCTGTTTACGTGAGGAAGGAGCGCAA
GCGGCACAAAACTGACCCCTCAGCTGCAGGCCGGAAAAAGAAGCAGCGGCATGGTGAGGCGGTT
GTCCCACCACGATCCTTGTTTGATCGGGCAACACCTGGCATGTTGAAAATCCGGCGTGAAGGCA
AAGAGCAGAAGAAGAATTTGCTGCTGAAACAACAGACACCCTTTGCCAAGCCTCTGCCCACCTA
TGTTAAGTCCTCAGGGGAACCTGCCCAGGACAGTCCGGACTGGCTCATTGGCGAGGACTGGGCC
TTGCTCCAGGCTGTAAAGCAGTTGCTTGAGCTGCCCTTGAACCTCACGATTGTGTCACCTGCCC
ACACTCCTAATTGGGACCTTGTCAGTGATGTTGTCAACTCTTGTAGTCGAATCTACCGCTCTTC
CAAGCAGTGCCGGAATCGTTATGAGAATGTCATCATTCCCAGAGAGGAGGGGAAGAGTAAGAAC
AACCGTCCGCTCCGCACAAGCCAGATTTATGCTCAGGATGAGAACGCAACTCACACCCAGTTGT
ACACAAGCCACTTTGAGCTGATGAAAATGACAGCTGGCAAGAGAAGCCCCCCAATCAAGCCTCT
GCTTGGCATGAATCCCTTTCAGAAGAACCCCAAACATGCCTCTGTGCTGGCAGAAAGTGGAATC
AACTATGACAAGCCGCTGCCTCCCATTCAAGTTGCATCTCTCCGTGCAGAGCGAATTGCAAAAG
AGAAAAAGGCTCTGGCTGATCAGCAGAAGGCACAGCAGCCACCGGTGACACAGCCGCCCCCTCA
GCAGCAGCCTCAGCAGCAGCAGCCGCCTCAGCAGCAGCAGCAGCAGCCCCCACCACCTCCACAG
CAGCCACCACCACCAGTGCCCCAGCCACAGGCAGCAAGCAGTCAGACACCAGCAGGGCAGCCTG
TTGTCCAGCCTCAGGTCCAGGCCCAGCCACAGCCACCGCCTGTGCAGGCACAGTCAAAGGGGCA
GGCCACAATGACAACTGTGGGCAGTGCTGCTGTGCTGGCAGGAACCATTAAAACATCAGTCACT
GGAACAAGCATCCCAACAGGCACTGTAAGTGGAAATGTGATTGTGAACACAATAGCCGGTGTCC
CTGCTACTTTCCAGTCCATTAACAAGCGTCTGGCATCACCTGTGGCTCCTGGAGCTTTGACTAC
ATCTGGAGGTTCTGCTCCTGCTCAGGTGGTTCACACCCAGCAACGAGCAGTCGGCTCCCCAGCC
ACTGCCACCACTGACCTGGTGTCCATGACAACAACTCAAGGTGTACGAGCAGTCACTTCCGTGA
CAGCCTCAGCTGTGGTCACTACCAACCTGACTCCAGTGCAGACCCCAACCCGCTCTTTAGTAAC
CCAGGTGTCTCAAGCCACAGGGGTTCAGCTACCCGGAAAAACCATCACCCCTGCTGCCCATTTC
CAGCTTCTTAGGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGA
CTTCCCAGGTGCAAGTTCCACAGCTCCAGGGCCAGGCCCAGTCTCCTGCACAGATGAAAGCTGT
GGGCAAGCTAGCACCGGAACACATCATCAAGATGCAGAAACAGAAGATGCAGCTGCCACCACAG
CCCCCACCACCACAGGCCCAGCCAGGACCCCCACAGCAACCAGCACAAGTGCAAGTGCAGACTG
CACAGCCCCCACAGCAGCAGCAGAGTCCTCAGCTCACCACAGTCACAGCCCCACGGCCTGGGGC
TTTGCTCACAGGCACCACCGTAGCCAACCTCCAGGTGGCCCGGCTTACCCGAGTCCCTACTTCT
CAGCTGCAGGCACAAGGGCAGATGCAAACTCAGACGCCCCAGCCTGCACAGGTGGCCTTGGCAA
AGCCTCCGGTGGTATCTGTCCCAGCAGCTGTGGTCTCCTCGCCAGGGGTCACGACCCTGCCTAT
GAACGTTGCAGGGATCAGCGTGGCAATTGGACAGCCACAAAAAACAGCAGGGCAGACTGTTGTG
GCCCAACCCGTACATGTCCAACAACTGCTGAAGCTCAAGCAGCAGGCTGTCCAGCAGCAGAAGG
CCATCCAGCCACAAGTTGCCCAGGGCCAGGCTGCTGTCCAGCAGAAGCTAACCACCCAACAGAT
CACTACTCAGGGCCCGCAGCAGAAGGTTGCTTATGCTGCCCAGCCAGCCCTTAAAACCCAGTTT
CTGACTACACCCATCTCCCAGGCCCAGAAACTGGCTGGGACTCAGCAGGTGCAGACTCAGATTC
AGGTTGCAAAACTCCCTCAAGTTGTGCAGCAACAAACACCTGTGGCCAGTATACAGCAAGTTGC
ATCAGCTTCTCAGCAGGCTTCTCCGCAGACGGTGACGCTCACACAGGCAACAGCAGCAGGGCAG
CAGGTACAGATGATCCCAACAGTGACTGCAACAGCCCAGGTAGTGCAGCAGAAGCTCATCCAGC
AGCAGGTGGTGACCACAGCCTCAGCATCACTGCAGACCCCTGGTGGCCCAAGCCCAGCACAGCT
TCCAACCAGCTCTGACAGCCCAAACCAGCAGCCGAAGTTGCAAATGAGAGTCCCTGCTGTTAGG
TTGAAGACACCCACCAAACCGCCATGCCAGTAGGCTGGAGATTGGTTGGTCTGTGCTAAGGCTG
CCCCGTGTGTATGTGACAGTGCACACAGTGAGTTTCTCTTAGTGTGCACAGCTCAGTACTTGGT
AGGGCTACATATCCTACCATTGTTTGCACATGCATTGTAGTCCTTCAGCAGGAGAGATGGCAGA
CCATCAGAGATCCCTGTCTCTTCCTAGAGCCTCCACTCTGGTCCTCTCTCTCTAAGTGCATATA
CCCTTCTCAATATGGCTTATGTTACAGGCATCCATCTTGCCCCAGTGAACATTAGCTTTGATTT
GAATGAAGCTCTGGGGCTGATAGCATCCCTGTAGAGTAAGTTTGTGACACATTTTACTAGGCAC
CTCCGTGGATCCTTTAGTGTTCTTGTGACAAGCTGTGGACACATAGATACGGCAGGTGAAGCAG
CCTGGTGGAGTTGAAATCAACACTACTTTCCCCTACTTTTTTCCTTAGTCTGGAGAGCCTAACA
TTTGCCTAGGAAGGCCTCATTTGGTCCACCCCACCCCTGGCAGCTCTTTATGGATTTCAGATGT
CCTGACTGAACTGTTGTACTGTTATGGCCATTGCAGTTGAAGGGAAAAGGTTAGTTAGAATGAA
GCTGAGTCCTCGGTGTTTACTCTTCTTACAACTGCAAGGTCGCATGTGGCATTCATGGACATAA
CAAGCTGACCATGCCTTCTACTTGCCAGAGTGTGGAAGGTCCATGTTCCACATCAGTGCTGAAG
CCTGTTTTATGGCATGGGTCGCCTGAGGCCTGTGCTGTTATGTCAGTACTGCAGCCTGGAAGAC
AGAAGTGGTTGTGTTGTGTGCCGCCATGTCCGTCCCGCTGTTTGTGTCCTGTGTGGGGAGGAAT
TTGGTAATATATTCCATTCTGATGCCACCCAGAACTCACTTTTGAGCTCTTAATGTGAAACTTG
GGGGGGAAAGTAGTAGATGTTGAAAAAAACAGAAGAGGTCCTGTATGCGGTCTCATAGGCAAAG
CCCCATCCTTCTGTCTTGTATGCTGTGTTGGGGGAAAGCGCTTTGGAGGTTCCTGGTACCTGGC
TCCTGGCTCGCAGCAGCAGCAGTTCCTGTAGGTCCATGGGCTCTTTGGTGAACAGCACACAACC
ATTGTGGCAGCCGCCTTCAGAGTGCCCAAGCCAAGTGTTTGGTGGGAGAAACAAGAGTCGTCTT
CATTTTTGGCAGTTACTTTTGTTTATTTTTCAACCAGATAGATGTTGTGTTTTTTTAAAAATGT
AAGAAACAGGACTGAAATTGTAAATACTTTGTAAACACAAGCATTTGTACTTGAATAGGATTTT
AAACGGACAAGGTGTCCTACTAAGCAAAGGCTAATAAATAACCTTTCTAC

hide sequence

RefSeq Acc Id:

XM_063271366 ⟹ XP_063127436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,665 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271367 ⟹ XP_063127437

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,552,158 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271368 ⟹ XP_063127438

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,552,093 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271369 ⟹ XP_063127439

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,675 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271371 ⟹ XP_063127441

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,552,163 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271372 ⟹ XP_063127442

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,665 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271373 ⟹ XP_063127443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,665 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271374 ⟹ XP_063127444

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,665 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271375 ⟹ XP_063127445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,665 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271376 ⟹ XP_063127446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,675 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271377 ⟹ XP_063127447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,552,158 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271378 ⟹ XP_063127448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,552,163 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271379 ⟹ XP_063127449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,665 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271380 ⟹ XP_063127450

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,552,158 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271382 ⟹ XP_063127452

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,675 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271383 ⟹ XP_063127453

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,665 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271384 ⟹ XP_063127454

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,665 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271385 ⟹ XP_063127455

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,665 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271386 ⟹ XP_063127456

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,574,796 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271387 ⟹ XP_063127457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,574,797 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271388 ⟹ XP_063127458

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,665 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271389 ⟹ XP_063127459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,665 - 51,658,635 (+)	NCBI

RefSeq Acc Id:

XM_063271390 ⟹ XP_063127460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	51,551,665 - 51,658,635 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100619	(Get FASTA)	NCBI Sequence Viewer
	XP_063127436	(Get FASTA)	NCBI Sequence Viewer
	XP_063127437	(Get FASTA)	NCBI Sequence Viewer
	XP_063127438	(Get FASTA)	NCBI Sequence Viewer
	XP_063127439	(Get FASTA)	NCBI Sequence Viewer
	XP_063127441	(Get FASTA)	NCBI Sequence Viewer
	XP_063127442	(Get FASTA)	NCBI Sequence Viewer
	XP_063127443	(Get FASTA)	NCBI Sequence Viewer
	XP_063127444	(Get FASTA)	NCBI Sequence Viewer
	XP_063127445	(Get FASTA)	NCBI Sequence Viewer
	XP_063127446	(Get FASTA)	NCBI Sequence Viewer
	XP_063127447	(Get FASTA)	NCBI Sequence Viewer
	XP_063127448	(Get FASTA)	NCBI Sequence Viewer
	XP_063127449	(Get FASTA)	NCBI Sequence Viewer
	XP_063127450	(Get FASTA)	NCBI Sequence Viewer
	XP_063127452	(Get FASTA)	NCBI Sequence Viewer
	XP_063127453	(Get FASTA)	NCBI Sequence Viewer
	XP_063127454	(Get FASTA)	NCBI Sequence Viewer
	XP_063127455	(Get FASTA)	NCBI Sequence Viewer
	XP_063127456	(Get FASTA)	NCBI Sequence Viewer
	XP_063127457	(Get FASTA)	NCBI Sequence Viewer
	XP_063127458	(Get FASTA)	NCBI Sequence Viewer
	XP_063127459	(Get FASTA)	NCBI Sequence Viewer
	XP_063127460	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM14033	(Get FASTA)	NCBI Sequence Viewer
	EDM14034	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000053578
	ENSRNOP00000053578.2
	ENSRNOP00000068916
	ENSRNOP00000068916.1
	ENSRNOP00000081678
	ENSRNOP00000081678.1
	ENSRNOP00000083470.1
	ENSRNOP00000099488.1
	ENSRNOP00000100170.1

RefSeq Acc Id:

NP_001100619 ⟸ NM_001107149

- UniProtKB:

D3ZQ89 (UniProtKB/TrEMBL), A6J294 (UniProtKB/TrEMBL), A0A8I6G935 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MHHGSGPQNVQHQLQRSRSFTGSEEEQPAHPNLPPSPAAPFAPSASPSAPQSPGYQIQQLMSRS
PVAGQNVNITLQNVGPVVGGNQQITLAPLPLPNPTSPGFQFGAQQRRFEHGSPSYIQVTSPLSQ
QVQTQSPTQPNPGPGQTLQNVRAGAPGPGLGICSSSPTGGFVDASVLVRQISLSPSSGGHFVFQ
EAPGLTQMAQGAQVQLQHSGAPITVRERRLSQPHAQSGGTIHHLGPQSPATAGGTGLQPLASPN
HITTASLPPQISSIIQGQLIQQQQQVLQGQPMNRSLGFERTPGVLLPGVGGPSAFGMTSPPPPT
SPSRTTMPPGLSSVPLTSMGSSGIKKVPKKLEEIPPASQEMAQMRKQCLDYHYKEMEALKEVFK
EYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDIEEEEEEEEEEEEKSEVINDEHQA
LTGSLVVGPGSTTEADPFKRQQVMPPTEQSKRPRLEVGHPGVVFQHPGVNAGVPLQQLMPTVQG
GMPPTPQATQLTGQKQSQQQYDPSTGPPVQNAASLHTPPPQLPARLPPASVPATALPSTLQFSQ
QSQMVEAPTQLQIPVKTQQLNAPIPAPLPSQLPAPSSQPAQPALHVSMPGKAQMQTSQLSSQTQ
TVASTRPPLESAQPCQRSLPTSSSSSSLVPVSGSGPGPSPARSSPVNRPSSATNKALSPVTSRS
PGVAVSAPPKPQSPAQNAASSQDGSQDKLAEQITLENQIHQRIADLRKEGLWSLRRLPKLQEAP
RPKSHWDYLLEEMQWMATDFAQERRWKLAAAKKLVRTVARHHEEKKLREERGKKEEQSRLRRIA
ATTAREIEYFWSNIEQVVEIKLQVELEEKRKKALNLQKVSRRGKESRLKGFDTSPEHSMDLGIS
GRKRKASTSLTDDEVEDEEETIEEEEAHEGLVDHHTELSNLAKEAELPLIDLMKLYEGAFLPNF
QWPQPEPDHEESSGEEDAEDCPSDRESRRDSVLIDSLFIMDQFKAAERMSIGKSNTKDITEVTA
VAEAILPKGSARVTTAVKFSAPSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQI
IAFFAHLACNEGNWGPHLVVMRSCNILKWELELKRWCPGLKTLSYVGTHRELKAKRQEWTEPNN
FHICITSYKQFFRGYTAFSRVHWKCLVVDEMQRVKGMTERHWEAIFKLQSQQRLLLIDVPLHNT
FLELWTMVHFLIPGISRPYLSFPLKAPNEENQDYYHKMVIRLHRVTQPFILRRTKRDVEKQLTR
KYEHVLKCRLSSRQKALYEDVILQPRTQEALKSGHFVSVLSVLTRLQRICNHPGLVEPRVPGSS
YAAGSLQYKSASLILRVLEREFWKETDLSMFDLIGLENKISRHEAELLYKKKVTRKLMEEVFTS
PPPSARPAAVKLKASRLFQPVQYGQKPEGRTVAFPSTHPPRMANTNASTATPQGQVRGRPPIAT
FSANPDTKGGEVVKIAQLASIAGPQSRVAQPETPVTLQFQGNKFTLSHSQLRQLTAGQPLQLQG
SVLQIVSAPGQPYLRAPGPVVMQTVSQAGAVHSTLGSKPPTSGPSPAPLSTQVGVPGRVAVSAM
AVGEPGLASKPASPAAGPTQEEKSRLLKERLDQIHFINERRCSQAPVYGRDLLRICSLPGRRKR
PLCWSLDSNLGKGPKGADYDTSLSKSEGDLILTLSQRQESLQDVLDRVACVIPPVVATPPSLWV
ERPPSLYSSRLRALRQCLREHTGPYHRQLQQLTALRSLQFPELRLVQFDSGKLEALAILLQKLK
SEGRRVLILSQMVLMLDILEMFLNFHYLTYVRIDENANSEQRQELMRSFNRDRRIFCALLSTHS
RATGINLVEADTVVFYDNDLNPVMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKLLKNGTKDL
IREVAAQGNDYSMAFLTQRTIQELFEVYSPMDDAGFPVKAEEFVVLSQEPSVSETIAPKIARPF
IEALKSIECLEEDAQRSTEEAVPGSSTVAVSSDSDGSRYDEEPSQLEELADFMEQLTPIEKYAL
NYLELFHTTTEQEKERSSEDLVMATMKDWETRNARALQEREAQLQLEQEEAELLTYTREDAYSM
EYVYEDADGQTEVMPLWTPPTPPQDDNDIYIDSVMCLMYETTPIPEAKLPPVYVRKERKRHKTD
PSAAGRKKKQRHGEAVVPPRSLFDRATPGMLKIRREGKEQKKNLLLKQQTPFAKPLPTYVKSSG
EPAQDSPDWLIGEDWALLQAVKQLLELPLNLTIVSPAHTPNWDLVSDVVNSCSRIYRSSKQCRN
RYENVIIPREEGKSKNNRPLRTSQIYAQDENATHTQLYTSHFELMKMTAGKRSPPIKPLLGMNP
FQKNPKHASVLAESGINYDKPLPPIQVASLRAERIAKEKKALADQQKAQQPPVTQPPPQQQPQQ
QQPPQQQQQQPPPPPQQPPPPVPQPQAASSQTPAGQPVVQPQVQAQPQPPPVQAQSKGQATMTT
VGSAAVLAGTIKTSVTGTSIPTGTVSGNVIVNTIAGVPATFQSINKRLASPVAPGALTTSGGSA
PAQVVHTQQRAVGSPATATTDLVSMTTTQGVRAVTSVTASAVVTTNLTPVQTPTRSLVTQVSQA
TGVQLPGKTITPAAHFQLLRQQQQQQQQQQQQQQQQQTSQVQVPQLQGQAQSPAQMKAVGKLAP
EHIIKMQKQKMQLPPQPPPPQAQPGPPQQPAQVQVQTAQPPQQQQSPQLTTVTAPRPGALLTGT
TVANLQVARLTRVPTSQLQAQGQMQTQTPQPAQVALAKPPVVSVPAAVVSSPGVTTLPMNVAGI
SVAIGQPQKTAGQTVVAQPVHVQQLLKLKQQAVQQQKAIQPQVAQGQAAVQQKLTTQQITTQGP
QQKVAYAAQPALKTQFLTTPISQAQKLAGTQQVQTQIQVAKLPQVVQQQTPVASIQQVASASQQ
ASPQTVTLTQATAAGQQVQMIPTVTATAQVVQQKLIQQQVVTTASASLQTPGGPSPAQLPTSSD
SPNQQPKLQMRVPAVRLKTPTKPPCQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000053578 ⟸ ENSRNOT00000056735

Ensembl Acc Id:

ENSRNOP00000068916 ⟸ ENSRNOT00000084214

Ensembl Acc Id:

ENSRNOP00000081678 ⟸ ENSRNOT00000118850

Ensembl Acc Id:

ENSRNOP00000083470 ⟸ ENSRNOT00000095891

RefSeq Acc Id:	XP_063127436 ⟸ XM_063271366
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127442 ⟸ XM_063271372
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127443 ⟸ XM_063271373
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JU09 (UniProtKB/TrEMBL), A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127453 ⟸ XM_063271383
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127444 ⟸ XM_063271374
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127445 ⟸ XM_063271375
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127458 ⟸ XM_063271388
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127454 ⟸ XM_063271384
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127459 ⟸ XM_063271389
- Peptide Label:	isoform X13
- UniProtKB:	A6J294 (UniProtKB/TrEMBL), D3ZQ89 (UniProtKB/TrEMBL), A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127449 ⟸ XM_063271379
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127455 ⟸ XM_063271385
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127460 ⟸ XM_063271390
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I5ZTE5 (UniProtKB/TrEMBL), A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127439 ⟸ XM_063271369
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127446 ⟸ XM_063271376
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127452 ⟸ XM_063271382
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127438 ⟸ XM_063271368
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127437 ⟸ XM_063271367
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127447 ⟸ XM_063271377
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127450 ⟸ XM_063271380
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127441 ⟸ XM_063271371
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127448 ⟸ XM_063271378
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127456 ⟸ XM_063271386
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127457 ⟸ XM_063271387
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6G935 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000100170 ⟸ ENSRNOT00000162783

Ensembl Acc Id:

ENSRNOP00000099488 ⟸ ENSRNOT00000159063

Protein Domains

E1A-binding protein p400 N-terminal Helicase ATP-binding Helicase C-terminal HSA Myb-like

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698735

Promoter ID:

EPDNEW_R9259

Type:

initiation region

Name:

Ep400_1

Description:

E1A binding protein p400

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	51,948,678 - 51,948,738	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304733	AgrOrtholog
BioCyc Gene	G2FUF-18817	BioCyc
Ensembl Genes	ENSRNOG00000037483	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000056735	ENTREZGENE
	ENSRNOT00000056735.5	UniProtKB/TrEMBL
	ENSRNOT00000084214	ENTREZGENE
	ENSRNOT00000084214.3	UniProtKB/TrEMBL
	ENSRNOT00000095891.2	UniProtKB/TrEMBL
	ENSRNOT00000118850	ENTREZGENE
	ENSRNOT00000118850.2	UniProtKB/TrEMBL
	ENSRNOT00000159063.1	UniProtKB/TrEMBL
	ENSRNOT00000162783.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.10810	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
	SWI2/SNF2 ATPases, N-terminal domain	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7131250	IMAGE-MGC_LOAD
InterPro	DEAD-like_N	UniProtKB/TrEMBL
	EP400_N	UniProtKB/TrEMBL
	Helicase/SANT-assoc_DNA-bd	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SANT/Myb	UniProtKB/TrEMBL
	SNF2-like_sf	UniProtKB/TrEMBL
	SNF2/RAD54-like_C	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
KEGG Report	rno:304569	UniProtKB/TrEMBL
MGC_CLONE	MGC:94238	IMAGE-MGC_LOAD
NCBI Gene	304569	ENTREZGENE
PANTHER	E1A-BINDING PROTEIN P400	UniProtKB/TrEMBL
	E1A-BINDING PROTEIN P400-RELATED	UniProtKB/TrEMBL
Pfam	EP400_N	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	HSA	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
PhenoGen	Ep400	PhenoGen
PROSITE	HELICASE_ATP_BIND_1	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
	HSA	UniProtKB/TrEMBL
	MYB_LIKE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000037483	RatGTEx
SMART	DEXDc	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
	HSA	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A0G2JU09	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZTE5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G935	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LEB9_RAT	UniProtKB/TrEMBL
	A0ABK0LH33_RAT	UniProtKB/TrEMBL
	A6J294	ENTREZGENE, UniProtKB/TrEMBL
	A6J295_RAT	UniProtKB/TrEMBL
	D3ZQ89	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Ep400	E1A binding protein p400	Ep400_predicted	E1A binding protein p400 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Ep400_predicted	E1A binding protein p400 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

RGD Manual Annotations