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Gene: Cpsf6 (cleavage and polyadenylation specific factor 6) Rattus norvegicus

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Symbol:

Cpsf6

Name:

cleavage and polyadenylation specific factor 6

RGD ID:

1304640

Description:

Predicted to enable exon-exon junction complex binding activity; mRNA binding activity; and ribosomal large subunit binding activity. Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA 3'-end processing; positive regulation of RNA export from nucleus; and protein heterotetramerization. Predicted to be located in cytoplasm and nuclear lumen. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex and ribonucleoprotein complex. Orthologous to human CPSF6 (cleavage and polyadenylation specific factor 6); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; mRNA decay pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cleavage and polyadenylation specific factor 6, 68kDa; cleavage and polyadenylation specificity factor subunit 6; LOC299811

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CPSF6 (cleavage and polyadenylation specific factor 6)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cpsf6 (cleavage and polyadenylation specific factor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cpsf6 (cleavage and polyadenylation specific factor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CPSF6 (cleavage and polyadenylation specific factor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CPSF6 (cleavage and polyadenylation specific factor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cpsf6 (cleavage and polyadenylation specific factor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CPSF6 (cleavage and polyadenylation specific factor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CPSF6 (cleavage and polyadenylation specific factor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cpsf6 (cleavage and polyadenylation specific factor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cpsf6 (cleavage and polyadenylation specific factor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CPSF6 (cleavage and polyadenylation specific factor 6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CPSF6 (cleavage and polyadenylation specific factor 6)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cpsf6 (cleavage and polyadenylation specific factor 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cpsf6 (cleavage and polyadenylation specific factor 6)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cpsf6 (cleavage and polyadenylation specific factor 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	cpsf6 (cleavage and polyadenylation specific factor 6)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7185	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7185	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cfim-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cfim-2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cpsf6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cpsf6	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	54,798,452 - 54,887,711 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	54,842,490 - 54,873,998 (-)	Ensembl				GRCr8
mRatBN7.2	7	52,956,589 - 53,001,783 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	52,956,589 - 52,988,122 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	54,863,307 - 54,894,827 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	57,066,409 - 57,097,929 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	56,844,294 - 56,875,817 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	60,385,688 - 60,417,661 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	60,385,688 - 60,416,925 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	60,387,688 - 60,432,254 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	56,658,291 - 56,689,892 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	49,730,420 - 49,761,230 (-)	NCBI		Celera
RGSC_v3.1	7	56,684,035 - 56,711,179 (-)	NCBI
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dinitrotoluene (EXP)

2,6-dimethoxyphenol (ISO)

2,6-dinitrotoluene (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

Butylbenzyl phthalate (ISO)

caffeine (ISO)

carbamazepine (ISO)

cobalt dichloride (ISO)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

Dibutyl phosphate (ISO)

diclofenac (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

furfural (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

ivermectin (ISO)

leflunomide (ISO)

methidathion (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

miconazole (ISO)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

phenylmercury acetate (ISO)

phenytoin (EXP)

piroxicam (ISO)

propiconazole (ISO)

resveratrol (EXP)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

triphenyl phosphate (EXP,ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway (IEA,ISO)

mRNA 3'-end processing (IEA,ISO)

mRNA alternative polyadenylation (IBA,IEA,ISO)

mRNA processing (IEA,ISO)

positive regulation of RNA export from nucleus (IEA,ISO)

protein heterotetramerization (IEA,ISO)

protein tetramerization (IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

interchromatin granule (IEA,ISO)

mRNA cleavage and polyadenylation specificity factor complex (IBA,IEA,ISO)

mRNA cleavage factor complex (IEA,ISO)

nuclear speck (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

paraspeckles (IEA,ISO)

perichromatin fibrils (IEA,ISO)

ribonucleoprotein complex (IEA,ISO)

Molecular Function

exon-exon junction complex binding (IEA,ISO)

mRNA binding (IBA,IEA,ISO)

nucleic acid binding (IEA)

protein binding (ISO)

ribosomal large subunit binding (IEA,ISO)

RNA binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

3'-end pre-mRNA processing pathway (ISO)

mRNA decay pathway (IEA)

RNA polymerase II transcription termination pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Pre-mRNA 3'-end processing complex assembly and function.	Chan S, etal., Wiley Interdiscip Rev RNA. 2011 May-Jun;2(3):321-35. doi: 10.1002/wrna.54. Epub 2010 Oct 18.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors.	Gruber AR, etal., Wiley Interdiscip Rev RNA. 2014 Mar-Apr;5(2):183-96. doi: 10.1002/wrna.1206. Epub 2013 Nov 14.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:9659921	PMID:14690600	PMID:15169763	PMID:17267687	PMID:18032416	PMID:18809582	PMID:19864460	PMID:19946888	PMID:20695905	PMID:21295486	PMID:22658674	PMID:22681889
PMID:23187700	PMID:29276085	PMID:30916345

Genomics

Comparative Map Data

Cpsf6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	54,798,452 - 54,887,711 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	54,842,490 - 54,873,998 (-)	Ensembl				GRCr8
mRatBN7.2	7	52,956,589 - 53,001,783 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	52,956,589 - 52,988,122 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	54,863,307 - 54,894,827 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	57,066,409 - 57,097,929 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	56,844,294 - 56,875,817 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	60,385,688 - 60,417,661 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	60,385,688 - 60,416,925 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	60,387,688 - 60,432,254 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	56,658,291 - 56,689,892 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	49,730,420 - 49,761,230 (-)	NCBI		Celera
RGSC_v3.1	7	56,684,035 - 56,711,179 (-)	NCBI
Cytogenetic Map	7	q22	NCBI

CPSF6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	69,239,569 - 69,274,358 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	69,239,543 - 69,279,829 (+)	Ensembl			hg38	GRCh38
GRCh37	12	69,633,349 - 69,668,138 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	67,919,667 - 67,951,290 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	67,919,666 - 67,951,290	NCBI
Celera	12	69,297,148 - 69,331,977 (+)	NCBI		Celera
Cytogenetic Map	12	q15	NCBI
HuRef	12	66,694,597 - 66,717,839 (+)	NCBI		HuRef
CHM1_1	12	69,601,666 - 69,636,525 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	69,218,652 - 69,253,462 (+)	NCBI		T2T-CHM13v2.0

Cpsf6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	117,180,572 - 117,212,903 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	117,180,578 - 117,215,920 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	117,344,667 - 117,376,998 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	117,344,673 - 117,380,015 (-)	Ensembl			mm10	GRCm38
MGSCv37	10	116,781,724 - 116,814,029 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	116,752,317 - 116,781,059 (-)	NCBI		MGSCv36	mm8
Celera	10	119,287,703 - 119,311,036 (-)	NCBI		Celera
Cytogenetic Map	10	D2	NCBI
cM Map	10	65.41	NCBI

Cpsf6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	15,677,645 - 15,708,011 (+)	Ensembl
ChiLan1.0	NW_004955458	15,684,040 - 15,708,011 (+)	NCBI	ChiLan1.0	ChiLan1.0

CPSF6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	77,253,688 - 77,286,086 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	77,251,962 - 77,286,894 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	66,750,301 - 66,785,104 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	69,537,904 - 69,562,570 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	69,535,302 - 69,550,789 (+)	Ensembl			panPan2	panpan1.1

CPSF6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	11,265,044 - 11,297,395 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	11,262,265 - 11,292,832 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	11,192,974 - 11,229,102 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	11,384,373 - 11,420,547 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	11,387,159 - 11,420,524 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	11,251,450 - 11,287,708 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	11,498,596 - 11,534,738 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	11,620,546 - 11,656,791 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cpsf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	47,032,412 - 47,064,888 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936545	7,045,043 - 7,077,736 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936545	7,045,043 - 7,077,710 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CPSF6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	33,525,689 - 33,555,226 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	33,525,668 - 33,559,941 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	36,157,912 - 36,194,879 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CPSF6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	64,859,701 - 64,894,144 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	64,859,718 - 64,882,269 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	180,805,605 - 180,840,076 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cpsf6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624948	56,246 - 84,051 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624948	53,317 - 83,983 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cpsf6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	195,463,180 - 195,494,070 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cpsf6
633 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	678
Count of miRNA genes:	280
Interacting mature miRNAs:	388
Transcripts:	ENSRNOT00000008193
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	23807606	68807606	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	45113903	90113903	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	10517086	62346019	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	26638057	71638057	Rat
1357336	Gluco6	Glucose level QTL 6	3.4		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	7	51700643	96700643	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	24179478	86817926	Rat
10059605	Kidm47	Kidney mass QTL 47	2.91	0.05	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	49137999	67614020	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	10112916	60150541	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	39845902	84845902	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	32998702	77998702	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	49682832	63890004	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	36178764	81178764	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	48475049	93475049	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	36178764	81178764	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
2303629	Vencon3	Ventilatory control QTL 3	7.25		respiration trait (VT:0001943)	respiration rate (CMO:0000289)	7	42996226	58678836	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	28624575	65788017	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	21541977	86817926	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	10498820	55498820	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	17460447	62460447	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
2303582	Gluco53	Glucose level QTL 53	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	7	48603087	93603087	Rat
70207	Niddm31	Non-insulin dependent diabetes mellitus QTL 31	3.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	20057232	65057232	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	27182914	72182914	Rat

Markers in Region

RH143542

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	52,970,933 - 52,971,048 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	60,400,032 - 60,400,146	NCBI	Rnor6.0
Rnor_5.0	7	60,402,032 - 60,402,146	UniSTS	Rnor5.0
RGSC_v3.4	7	56,672,636 - 56,672,750	UniSTS	RGSC3.4
Celera	7	49,744,763 - 49,744,877	UniSTS
RH 3.4 Map	7	487.7	UniSTS
Cytogenetic Map	7	q22	UniSTS

BE115415

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	52,958,575 - 52,958,764 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	60,387,674 - 60,387,862	NCBI	Rnor6.0
Rnor_5.0	7	60,389,674 - 60,389,862	UniSTS	Rnor5.0
RGSC_v3.4	7	56,660,277 - 56,660,465	UniSTS	RGSC3.4
Celera	7	49,732,406 - 49,732,594	UniSTS
RH 3.4 Map	7	480.9	UniSTS
Cytogenetic Map	7	q22	UniSTS

RH135054

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	52,959,300 - 52,959,497 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	60,388,399 - 60,388,595	NCBI	Rnor6.0
Rnor_5.0	7	60,390,399 - 60,390,595	UniSTS	Rnor5.0
RGSC_v3.4	7	56,661,002 - 56,661,198	UniSTS	RGSC3.4
Celera	7	49,733,131 - 49,733,327	UniSTS
RH 3.4 Map	7	483.0	UniSTS
Cytogenetic Map	7	q22	UniSTS

RH140527

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	52,959,967 - 52,960,057 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	60,389,066 - 60,389,155	NCBI	Rnor6.0
Rnor_5.0	7	60,391,066 - 60,391,155	UniSTS	Rnor5.0
RGSC_v3.4	7	56,661,669 - 56,661,758	UniSTS	RGSC3.4
Celera	7	49,733,798 - 49,733,887	UniSTS
RH 3.4 Map	7	483.0	UniSTS
Cytogenetic Map	7	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000008193 ⟹ ENSRNOP00000008193

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	54,842,490 - 54,873,998 (-)	Ensembl
mRatBN7.2 Ensembl	7	52,956,589 - 52,988,100 (-)	Ensembl
Rnor_6.0 Ensembl	7	60,385,688 - 60,416,925 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108117 ⟹ ENSRNOP00000094948

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	54,842,490 - 54,873,998 (-)	Ensembl
mRatBN7.2 Ensembl	7	52,960,136 - 52,988,122 (-)	Ensembl

RefSeq Acc Id:

NM_001106785 ⟹ NP_001100255

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,842,490 - 54,873,998 (-)	NCBI
mRatBN7.2	7	52,956,589 - 52,988,100 (-)	NCBI
Rnor_6.0	7	60,385,688 - 60,416,925 (-)	NCBI
Rnor_5.0	7	60,387,688 - 60,432,254 (-)	NCBI
RGSC_v3.4	7	56,658,291 - 56,689,892 (-)	RGD
Celera	7	49,730,420 - 49,761,230 (-)	RGD

Sequence:

show sequence

CAGGAGGCGGCGGCGGCGGCGGCCGAGGCCGAGGGAAGATGGCGGACGGTGTGGACCACATAGA
CATTTACGCGGATGTGGGGGAAGAGTTCAACCAGGAAGCGGAATATGGTGGGCATGATCAGATA
GATTTGTATGATGATGTCATCTCTCCATCTGCAAATAATGGCGATGCCCCAGAAGACCGGGACT
ACATGGATACTCTTCCACCAACTGTTGGTGATGATGTGGGTAAAGGGGCAGCACCAAACGTTGT
CTATACTTACACTGGAAAGAGAATCGCATTGTATATTGGAAATCTAACATGGTGGACAACAGAT
GAGGACCTAACTGAAGCAGTTCATTCTTTGGGAGTAAATGATATTTTGGAGATAAAATTTTTTG
AAAATCGGGCAAATGGACAATCAAAGGGATTTGCCCTTGTTGGTGTTGGATCTGAAGCATCTTC
CAAAAAGTTAATGGATCTTTTGCCTAAAAGAGAACTTCACGGTCAGAATCCTGTTGTAACTCCA
TGCAATAAACAGTTCCTGAGTCAGTTTGAAATGCAATCCAGGAAAACTACACAATCAGGACAAA
TGTCTGGGGAAGGTAAAGCTGGTCCTCCAGGAGGCGGTTCACGCGCAGCATTTCCACAAGGTGG
TAGAGGACGGGGCCGTTTTCCAGGGGCTGTTCCTGGTGGGGACAGATTTCCTGGGCCAGCAGGA
CCAGGAGGGCCACCTCCACCTTTCCCAGCTGGACAGACTCCACCACGTCCACCTCTAGGTCCAC
CTGGCCCACCTGGCCCCCCAGGTCCTCCACCTCCCGGTCAGGTTCTGCCACCTCCTCTAGCAGG
ACCTCCTAATCGAGGAGACCGCCCTCCACCACCAGTTCTTTTTCCTGGACAACCTTTTGGGCAG
CCTCCGCTGGGTCCACTTCCTCCTGGGCCTCCACCTCCAGTTCCAGGCTACGGCCCCCCTCCAG
GTCCACCGCCTCCACAGCAGGGACCACCTCCACCTCCAGGCCCCTTTCCACCTCGACCACCAGG
TCCACTAGGGCCTCCCCTTACACTTGCTCCTCCTCCACATCTTCCGGGACCACCTCCAGGTGCC
CCACCACCAGCTCCACATGTGAATCCTGCTTTTTTCCCTCCACCAACTAATAGTGGCATGCCAA
CATCAGATAGTCGAGGTCCACCGCCAACAGACCCATATGGCCGACCTCCACCATATGATAGGGG
TGACTATGGTCCCCCTGGGAGGGAAATGGATACTGCAAGAACACCTCTGAGTGAAGCTGAGTTT
GAAGAAATCATGAATAGAAATCGGGCAATCTCTAGCAGTGCTATTTCAAGAGCTGTATCTGATG
CTAGTGCTGGTGATTATGGGAGTGCTATTGAAACATTGGTAACAGCAATTTCTCTAATTAAACA
ATCCAAAGTATCTGCCGACGATCGCTGCAAAGTTCTTATTAGCTCTTTGCAAGACTGCCTTCAT
GGAATTGAGTCCAAGTCCTATGGGTCTGGATCAAGACGTGAACGATCAAGAGAAAGGGACCATA
GTAGATCACGGGAAAAGAGTCGACGTCATAAATCTCGGAGTAGAGATCGCCATGATGATTATTA
CAGAGAGAGAAGCAGAGAGCGAGAGAGACACCGGGATCGCGATCGGGATCGTGACCGGGAGCGC
GACCGAGAGCGAGAATACCGTCATCGTTAGAAGCAAAATCTACATCACAAATTTTGACACATTA
CAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAGCAGTCTTCACGGGGAAAGTGACGCTTGTC
CAGCAGTTTGCTTCTTGATTGAACTGAACCTGTAAGGATTCATGGATAAACTGAACAGGAATAG
ATCTGAATAAAGCAAATCTGCATAAATGGTAACCAGTAGCTCTACTTTTATTTTTTATGTTGCT
TAACTGTTTTATTTGAAGGAAACTGTGTGATTTAAAAAGTTAATAGCTTTTGCAACTTTATTAC
TGGTTATATATTTGGCCATTATAATGTGCAAGCAATTGGAAAAAGTCAAGTAAATGCTTGTTTT
TATAGTAGTTTGTTCTTGTTAAAATGTTCATATGATAATGTCTGTAAACAGCACCAATTTGATT
ACAATAGATGTAGTGTTGTAATAAACTGTTTAATGGGGCTGATGTGTAAAGCTGTTCAAGTTAT
TTGATGTTTACACCTCAGGGAAAGTCTTGTGTTCAGCAATATCTAAAGATAATGTTACTATGAC
AACATTTTTACTGTCCTTTAAAAAAGCATTGCAATAGCGTGTTTGGATATGCATCAATCTAATC
TTGCGTTCAGTGAATTAAACATGACTAATTAAGTGTCTATTGCCCTTGATTTTGATATTAGAAT
AGGTGATTACATGGGTATTTAATATTTCTATATTCTGCTTTTCTAGCTGTTTTTACCTAGTTAG
CTTGTGATTTTGCTGAATGGTATGTAAACGTGTAAAAACTGAAATCTGACAGAGCAATCCATTC
AATGTGTTAGGGGTCAAAAAATTGAAGGTTGTAACATTTTTGGTAAAAATTCATGTATTTGCTA
CAGTAGTGCAGCTTAATTACAACCCAGATATACTGAAATGAAAATTGTGAACTGCTAGCTTTTA
AGATAGATTTTGATAATTCTGATTTCATGCAGTAATTTACTGTTTCATGCTGATGGTGCCATAG
GCAGTGTAATTATGGCCACACAGCAAGATAAATGAGTAAAGAAAGCCCTAGTATTGTACTTGAT
AAAAATTTCTGAGGGGTATGATGTTTATTAACATTGGGTTGTATTCTTCAGTGTGAATAATGAA
AAATTATAGTTACACTGTCTTCATGGTTCGAGGAATTCTGTGTATATTCCTGTAACTTTGTTGA
TCTATGCTTGATTAGAGTTAGTTATCAGTTGTTTTTTTTTTTTTAATCCAGCCTTAATAAAAGG
TTGTATTAAACACACCTGGCTAGCATGTGTTCTGCAAAATTAGCAGAAACAAACTGTTAATTTG
ATTGCCTATTTTTATAGGAAGATAAAAATCTGAATTCCTAAAGAATTTTTAGATAAAGTCCTTA
AGCTAATTTGTGTTAAATATGTTTTAAAAGATCTTAAAGTTTACCTAAATTTAAGCGCAGTGCC
TAAGGCATGTACCATAGGTCGAGAGTGTGCAGCTTGAGACATTTGTACTTTTCTTCTTCAGTTT
CATCCTTTCTGCTTTTAAAATACTCAAAAATATCCATACCACTGTCAGTTCATTTTAAAACATT
TTGTGAGCAGAGTATTTTTTGCAAGGGATCATTGGTGTTTACCCAAACTGTTGTTAGCTCTCAG
AAATGATTTTTCTTAAGTTTTAATCTTGTTGAAATGCAATTACCTTTTGATTTGAGAGTTGTAT
CAAAATCTATTTTGTTTTGTATATAGGTATTGTAAGTTTTTGTCATTTCTTAGCTTTTTTAATA
GTTTAATTACAATACCCTAATGTGAAGCCGTGTGGACATACATGTGTTTACAAGGGAGATTAAG
ATTAGTTGATAGTGAGATTAAAAGGTAAGTACAATGCCCATAGATAGAACTTCTCTGAACATTT
TTAAAATGGAATCAAAAATACATATACTTGAAATGAAACTGGAGATTTTGTACTAATTTTAATC
CTTTATTACCTTTTTTTCTTTTTTAAAAATGAGTTGGAACTCTTATTGCTCTCTGTATGTCACC
CTCTTGCCCAGCTTATTCTATTACCTGACTTTGGACGCAGACAGAGTGGACTAGCATTGTTTGC
TGCTGCTAGTCCATTATTTTAAGTGTTGTCAGGAAGAAATAAAATAACCTTGGTTTGTCTAGTT
TTACAGTGTCTCCTCCCTGATAACACATGAATGTCAGCAGTAAAAGTAAACATTGCAAACCTTG
TTTTATTTGTCAAAGCCTTCTGTTGTTGAGGAGTCAGTTTCATTTGAAAACTGGTTTTTAATGT
GTAAAAACAATCCAAAGAGATAAAATTTTACAAAGACACCAAAAAAAAAAAAAAAAAAAAGGAG
AGAGAGAGAGATAGAGACAGGCAGACAGACAGGCAGGCAAATGAACTAAAGAGAAGAAAAAGTC
AGAAGAAAAAAGGAACTAGGGAGAGTTTTTAAGAAATTGTGGTTCATATAGTGGCAGTGAAAGC
AAGCTTGAGTTTGTCTTGAATCCTAGCATTGCCTAGTGCTGTGCAGTCACATTCCTTGCAACTA
GTAGTTAAAATTCCAGATGCTTGGTAAAGCGCCCACATGGTATTTCTCCTGGAGCAGCACTTTG
AATTCAATATACTGCTTTGAGGTAAAGGAAATACATTTGTAGAAAGGATTCTTTCAGTGTACAT
TTACATGTGTGTATGTTTTGTCAGCTTTCATCAGCAAGATGAGCAAGATTTTAGTGACTTGCTA
TAGCTATTGATCATACATGTTAGGCCATTTAATGTCTCCTTAACCTATAATCTTAAGCAGTTAA
CTACAATTTGGAATTTACAAATAGCATGTAGCTTAAGGTATTATTTTGATTTGATTCTCCTATG
GAGACTGTTGCTTTAGTTTTTACTAGTTTAAAGTCAGTTCTAAAAATAAACATGGAAGTTTTCA
TGAACGTTGTATAATATTTTATAGTAAAGGGGGGAAATTGTTGAAAAGGGTAAGACTTTCTCTT
TCCCTGTGTTGAAATGTGCCAATAGCCTAAGTACATTCTGTTTCATACAATGAGATGCTACTGC
AGGACTCCGATTGGAGTGCTCTTAACATTTTAGTTTTGCTACCCAAATGGTCATTGCATTGTTT
GTATCTTGCAAGGTGGCCCCAATATTGTGTTTTAAGCTTCAGCTTAAGTTATTTTAAGAGGAAG
TTTATGTTCTGATTCTTTACTGAGAATACAGTGTTGAGATTCTTGCTATTGCACAGATAAACTG
ATTTTTAAATTTTATTCATGAACTTCATTTGCATCCCATGGGCCTCTGTAAATGTTTCCCCTGG
TTGTGTGTTCTTACTAAATGCACGCTTTTTCATTGTACATACTAGACATTTTTTTGTGCTAAAA
TATATTAAGTAGGGTTTTTGTAGCAAAGCATTCTATTTTTATGTTCTTATAGTGTATGTGTTAA
CATTAATATTCAGTTTAAACACTGGTGTATTTATTTTTAGCAACTTGACTCCTAGAAGCCTTAG
ACTAATTTTTAAATAAACATTCAACCAAAAATTATGAATTTCTTGAGATGTGGCCTTATATGTG
GTGTTTTCTGTGTTCATATCGTGAGATTTTTTTTTTAATTTAGATTTTATTTAAATCAAGATTT
AGAATTAGTTTCATTTTAAGTCAAAACAGAAAGTGTACCATGCGTCTAGGCTTCTGGGAGGAAG
TTCTTACACTCTTCTTTCTTAGCATTAGAAGGAAGCAATATGAATTTATGATATTCTCAATATC
CAGGCCATTGTATTATGTCCAGGTTGCTTTAGCTTGGTTTTAGCCCAATTTAGGTTGGTTTTAG
CCCAATGTTTCTTTAAAGTTCCAGGTAGTTGGCATTCACTGAATATATAGCTACTACGGTTTTC
ATATGGGGCGTATGAACTCTTGGTTACATGTAGGCAGATTTTAAAGGCTTCCTGCTACATTAAT
TATGTTGTAACGGGAGACATCTAAAATATTAGGTAGCATTGAATTGAAGTCACACAGGTCTTGA
ATGGTATTCGTGGATAGTAAATACTACGAGCAGTTTCCATATCAAAGTACCCTAAAACTCCACC
ATGGGAGTAAATCACACTCACTTCATGATTGGATATACCCTTCATTTTAGTAAAAGTACTTCAT
TTCAAAAGTTTACACTTTACTGTGTAACACTTCTCAGCATTTCTGTGTGCAAATTATTTTAAAA
TTCAGTGATAATTCATGGTTTTTTTTTTCATTTTTTTACTTTGGAAATTGTAGTACTCAGGTGG
TATTTAATGAGAAATGATCATTTGAGGTGAATCATAATGCATTTTGAGGACTGCAACTATAACA
TTTATGACTTTAGCCTTAAGAAAAGGTCTATTATTCCTTCCTTGCATCCCATGGTATATTAGCA
AATAGTTTACAGCCCAGCACAGCCTTACAAAGTTGTTTTACAAATTTTTATGGAAAACCCTTAA
CAATTAAAAAAATTGTATCATATTACAGTACCTATGAGTTATGATCCCCCTCTGTAAATAAGTT
GTCTAATACCAGAAGGCCAAAGAAAGTCTTGATTTAGCTATTGAATGTGGTGACTTCATAAGAT
TTCTGTGCAAAAGGTAAGGTGATATTCCATTCAATAGGCATTCTTTTGATGTCCATGAAAACTA
GACTTCCATATTAGCTTCTTTCAAAAGGCTCATTCCCATTTTATTAAAATGTTTGTACTTGCAA
ATTTGTGTTTAATGTTTACTTTGTCTTTTCTTTCTTTAGCATTTAGGTGACTGTTCAGCAGTTT
TCTATATGGCCATTGTTGGCCTTAAACTGCGCTAGTAACAAGCATGGTATTTATCTTGTATGGA
AAATAAAAAAGTTTTCGTAAGACTTTGCAGTTTGCTCTTTTTGTTTGGCTTATAATTTTGGTAA
CTATTTCCTTTACCCTTGAATAATATCTATTGGGGAAATGCAATATGAAAGATTAGACTTTCAT
GTATATTTTGTCTAAGTCAACACTTTTGAGAGTGGCTATTTTCTCCTGGCATATTTTAAAAGTT
TAAATCCATTTCGTATGCATGCATGCATACATACGTGCATGTCCAGCCATGGCCCAAATGTGGA
GGTGGAAGGACAACTTGCAGGGGTTAGGTGGCATCAGCTTTACTTGCTTAGACATCTGGCTAAA
ATATAGTTGCCTCATCTTAAGAAGATTATGAACCTCACTAATCCTTTAGAATTAACATTTTTGG
ATCATAGCAACATACTTTACCAGTTAACTTAGGAACATTATGGGACATACTTTTAAAGAACAGA
TTAGTTCGTCAAATATTTGATCCACTGGGGCTGGAGATATAACTCAGTTGGTGCAGAGTACTTG
CATACAGCGCTGGAAGTCTGGGTTTGATACATGGCACCAATAAGAGCTGACGCAGTAGGGCACA
TCTGTAATCTGAGCACTTGGGATCAGAAGTTTCCTCATCTGATGAGATTCAGGCCGTCTTTGGG

hide sequence

RefSeq Acc Id:

XM_006241372 ⟹ XP_006241434

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,843,108 - 54,874,060 (-)	NCBI
mRatBN7.2	7	52,957,207 - 52,988,143 (-)	NCBI
Rnor_6.0	7	60,386,308 - 60,416,957 (-)	NCBI
Rnor_5.0	7	60,387,688 - 60,432,254 (-)	NCBI

Sequence:

show sequence

ATCCGCTGCTGCTGCCTCGGCGGGCCGACCTGCAGGAGGCGGCGGCGGCGGCGGCCGAGGCCGA
GGGAAGATGGCGGACGGTGTGGACCACATAGACATTTACGCGGATGTGGGGGAAGAGTTCAACC
AGGAAGCGGAATATGGTGGGCATGATCAGATAGATTTGTATGATGATGTCATCTCTCCATCTGC
AAATAATGGCGATGCCCCAGAAGACCGGGACTACATGGATACTCTTCCACCAACTGTTGGTGAT
GATGTGGGTAAAGGGGCAGCACCAAACGTTGTCTATACTTACACTGGAAAGAGAATCGCATTGT
ATATTGGAAATCTAACATGGTGGACAACAGATGAGGACCTAACTGAAGCAGTTCATTCTTTGGG
AGTAAATGATATTTTGGAGATAAAATTTTTTGAAAATCGGGCAAATGGACAATCAAAGGGATTT
GCCCTTGTTGGTGTTGGATCTGAAGCATCTTCCAAAAAGTTAATGGATCTTTTGCCTAAAAGAG
AACTTCACGGTCAGAATCCTGTTGTAACTCCATGCAATAAACAGTTCCTGAGTCAGTTTGAAAT
GCAATCCAGGAAAACTACACAATCAGGACAAATGTCTGGGGAAGGTAAAGCTGGTCCTCCAGGA
GGCGGTTCACGCGCAGCATTTCCACAAGGTGGTAGAGGACGGGGCCGTTTTCCAGGGGCTGTTC
CTGGTGGGGACAGATTTCCTGGGCCAGCAGGACCAGGAGGGCCACCTCCACCTTTCCCAGGAAA
TTTGATCAAGCATCTTGTTAAAGGAACTCGGCCTTTGTTCCTGGAAACTAGGATTCCATGGCAT
ATGGGGCACAGCATAGAGGAAATACCCATTTTTGGCCTAAAAGCTGGACAGACTCCACCACGTC
CACCTCTAGGTCCACCTGGCCCACCTGGCCCCCCAGGTCCTCCACCTCCCGGTCAGGTTCTGCC
ACCTCCTCTAGCAGGACCTCCTAATCGAGGAGACCGCCCTCCACCACCAGTTCTTTTTCCTGGA
CAACCTTTTGGGCAGCCTCCGCTGGGTCCACTTCCTCCTGGGCCTCCACCTCCAGTTCCAGGCT
ACGGCCCCCCTCCAGGTCCACCGCCTCCACAGCAGGGACCACCTCCACCTCCAGGCCCCTTTCC
ACCTCGACCACCAGGTCCACTAGGGCCTCCCCTTACACTTGCTCCTCCTCCACATCTTCCGGGA
CCACCTCCAGGTGCCCCACCACCAGCTCCACATGTGAATCCTGCTTTTTTCCCTCCACCAACTA
ATAGTGGCATGCCAACATCAGATAGTCGAGGTCCACCGCCAACAGACCCATATGGCCGACCTCC
ACCATATGATAGGGGTGACTATGGTCCCCCTGGGAGGGAAATGGATACTGCAAGAACACCTCTG
AGTGAAGCTGAGTTTGAAGAAATCATGAATAGAAATCGGGCAATCTCTAGCAGTGCTATTTCAA
GAGCTGTATCTGATGCTAGTGCTGGTGATTATGGGAGTGCTATTGAAACATTGGTAACAGCAAT
TTCTCTAATTAAACAATCCAAAGTATCTGCCGACGATCGCTGCAAAGTTCTTATTAGCTCTTTG
CAAGACTGCCTTCATGGAATTGAGTCCAAGTCCTATGGGTCTGGATCAAGAAGACGTGAACGAT
CAAGAGAAAGGGACCATAGTAGATCACGGGAAAAGAGTCGACGTCATAAATCTCGGAGTAGAGA
TCGCCATGATGATTATTACAGAGAGAGAAGCAGAGAGCGAGAGAGACACCGGGATCGCGATCGG
GATCGTGACCGGGAGCGCGACCGAGAGCGAGAATACCGTCATCGTTAGAAGCTGAAGGAAGAGG
AACACCTTCCAAGACAAAGCAGTCTTCACGGGGAAAGTGACGCTTGTCCAGCAGTTTGCTTCTT
GATTGAACTGAACCTGTAAGGATTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGCAAA
TCTGCATAAATGGTAACCAGTAGCTCTACTTTTATTTTTTATGTTGCTTAACTGTTTTATTTGA
AGGAAACTGTGTGATTTAAAAAGTTAATAGCTTTTGCAACTTTATTACTGGTTATATATTTGGC
CATTATAATGTGCAAGCAATTGGAAAAAGTCAAGTAAATGCTTGTTTTTATAGTAGTTTGTTCT
TGTTAAAATGTTCATATGATAATGTCTGTAAACAGCACCAATTTGATTACAATAGATGTAGTGT
TGTAATAAACTGTTTAATGGGGCTGATGTGTAAAGCTGTTCAAGTTATTTGATGTTTACACCTC
AGGGAAAGTCTTGTGTTCAGCAATATCTAAAGATAATGTTACTATGACAACATTTTTACTGTCC
TTTAAAAAAGCATTGCAATAGCGTGTTTGGATATGCATCAATCTAATCTTGCGTTCAGTGAATT
AAACATGACTAATTAAGTGTCTATTGCCCTTGATTTTGATATTAGAATAGGTGATTACATGGGT
ATTTAATATTTCTATATTCTGCTTTTCTAGCTGTTTTTACCTAGTTAGCTTGTGATTTTGCTGA
ATGGTATGTAAACGTGTAAAAACTGAAATCTGACAGAGCAATCCATTCAATGTGTTAGGGGTCA
AAAAATTGAAGGTTGTAACATTTTTGGTAAAAATTCATGTATTTGCTACAGTAGTGCAGCTTAA
TTACAACCCAGATATACTGAAATGAAAATTGTGAACTGCTAGCTTTTAAGATAGATTTTGATAA
TTCTGATTTCATGCAGTAATTTACTGTTTCATGCTGATGGTGCCATAGGCAGTGTAATTATGGC
CACACAGCAAGATAAATGAGTAAAGAAAGCCCTAGTATTGTACTTGATAAAAATTTCTGAGGGG
TATGATGTTTATTAACATTGGGTTGTATTCTTCAGTGTGAATAATGAAAAATTATAGTTACACT
GTCTTCATGGTTCGAGGAATTCTGTGTATATTCCTGTAACTTTGTTGATCTATGCTTGATTAGA
GTTAGTTATCAGTTGTTTTTTTTTTTTTAATCCAGCCTTAATAAAAGGTTGTATTAAACACACC
TGGCTAGCATGTGTTCTGCAAAATTAGCAGAAACAAACTGTTAATTTGATTGCCTATTTTTATA
GGAAGATAAAAATCTGAATTCCTAAAGAATTTTTAGATAAAGTCCTTAAGCTAATTTGTGTTAA
ATATGTTTTAAAAGATCTTAAAGTTTACCTAAATTTAAGCGCAGTGCCTAAGGCATGTACCATA
GGTCGAGAGTGTGCAGCTTGAGACATTTGTACTTTTCTTCTTCAGTTTCATCCTTTCTGCTTTT
AAAATACTCAAAAATATCCATACCACTGTCAGTTCATTTTAAAACATTTTGTGAGCAGAGTATT
TTTTGCAAGGGATCATTGGTGTTTACCCAAACTGTTGTTAGCTCTCAGAAATGATTTTTCTTAA
GTTTTAATCTTGTTGAAATGCAATTACCTTTTGATTTGAGAGTTGTATCAAAATCTATTTTGTT
TTGTATATAGGTATTGTAAGTTTTTGTCATTTCTTAGCTTTTTTAATAGTTTAATTACAATACC
CTAATGTGAAGCCGTGTGGACATACATGTGTTTACAAGGGAGATTAAGATTAGTTGATAGTGAG
ATTAAAAGGTAAGTACAATGCCCATAGATAGAACTTCTCTGAACATTTTTAAAATGGAATCAAA
AATACATATACTTGAAATGAAACTGGAGATTTTGTACTAATTTTAATCCTTTATTACCTTTTTT
TCTTTTTTAAAAATGAGTTGGAACTCTTATTGCTCTCTGTATGTCACCCTCTTGCCCAGCTTAT
TCTATTACCTGACTTTGGACGCAGACAGAGTGGACTAGCATTGTTTGCTGCTGCTAGTCCATTA
TTTTAAGTGTTGTCAGGAAGAAATAAAATAACCTTGGTTTGTCTAGTTTTACAGTGTCTCCTCC
CTGATAACACATGAATGTCAGCAGTAAAAGTAAACATTGCAAACCTTGTTTTATTTGTCAAAGC
CTTCTGTTGTTGAGGAGTCAGTTTCATTTGAAAACTGGTTTTTAATGTGTAAAAACAATCCAAA
GAGATAAAATTTTACAAAGACACCAAAAAAAAAAAAAAAAAAAAGGAGAGAGAGAGAGATAGAG
ACAGGCAGACAGACAGGCAGGCAAATGAACTAAAGAGAAGAAAAAGTCAGAAGAAAAAAGGAAC
TAGGGAGAGTTTTTAAGAAATTGTGGTTCATATAGTGGCAGTGAAAGCAAGCTTGAGTTTGTCT
TGAATCCTAGCATTGCCTAGTGCTGTGCAGTCACATTCCTTGCAACTAGTAGTTAAAATTCCAG
ATGCTTGGTAAAGCGCCCACATGGTATTTCTCCTGGAGCAGCACTTTGAATTCAATATACTGCT
TTGAGGTAAAGGAAATACATTTGTAGAAAGGATTCTTTCAGTGTACATTTACATGTGTGTATGT
TTTGTCAGCTTTCATCAGCAAGATGAGCAAGATTTTAGTGACTTGCTATAGCTATTGATCATAC
ATGTTAGGCCATTTAATGTCTCCTTAACCTATAATCTTAAGCAGTTAACTACAATTTGGAATTT
ACAAATAGCATGTAGCTTAAGGTATTATTTTGATTTGATTCTCCTATGGAGACTGTTGCTTTAG
TTTTTACTAGTTTAAAGTCAGTTCTAAAAATAAACATGGAAGTTTTCATGAACGTTGTATAATA
TTTTATAGTAAAGGGGGGAAATTGTTGAAAAGGGTAAGACTTTCTCTTTCCCTGTGTTGAAATG
TGCCAATAGCCTAAGTACATTCTGTTTCATACAATGAGATGCTACTGCAGGACTCCGATTGGAG
TGCTCTTAACATTTTAGTTTTGCTACCCAAATGGTCATTGCATTGTTTGTATCTTGCAAGGTGG
CCCCAATATTGTGTTTTAAGCTTCAGCTTAAGTTATTTTAAGAGGAAGTTTATGTTCTGATTCT
TTACTGAGAATACAGTGTTGAGATTCTTGCTATTGCACAGATAAACTGATTTTTAAATTTTATT
CATGAACTTCATTTGCATCCCATGGGCCTCTGTAAATGTTTCCCCTGGTTGTGTGTTCTTACTA
AATGCACGCTTTTTCATTGTACATACTAGACATTTTTTTGTGCTAAAATATATTAAGTAGGGTT
TTTGTAGCAAAGCATTCTATTTTTATGTTCTTATAGTGTATGTGTTAACATTAATATTCAGTTT
AAACACTGGTGTATTTATTTTTAGCAACTTGACTCCTAGAAGCCTTAGACTAATTTTTAAATAA
ACATTCAACCAAAAATTATGAATTTCTTGAGATGTGGCCTTATATGTGGTGTTTTCTGTGTTCA
TATCGTGAGATTTTTTTTTTAATTTAGATTTTATTTAAATCAAGATTTAGAATTAGTTTCATTT
TAAGTCAAAACAGAAAGTGTACCATGCGTCTAGGCTTCTGGGAGGAAGTTCTTACACTCTTCTT
TCTTAGCATTAGAAGGAAGCAATATGAATTTATGATATTCTCAATATCCAGGCCATTGTATTAT
GTCCAGGTTGCTTTAGCTTGGTTTTAGCCCAATTTAGGTTGGTTTTAGCCCAATGTTTCTTTAA
AGTTCCAGGTAGTTGGCATTCACTGAATATATAGCTACTACGGTTTTCATATGGGGCGTATGAA
CTCTTGGTTACATGTAGGCAGATTTTAAAGGCTTCCTGCTACATTAATTATGTTGTAACGGGAG
ACATCTAAAATATTAGGTAGCATTGAATTGAAGTCACACAGGTCTTGAATGGTATTCGTGGATA
GTAAATACTACGAGCAGTTTCCATATCAAAGTACCCTAAAACTCCACCATGGGAGTAAATCACA
CTCACTTCATGATTGGATATACCCTTCATTTTAGTAAAAGTACTTCATTTCAAAAGTTTACACT
TTACTGTGTAACACTTCTCAGCATTTCTGTGTGCAAATTATTTTAAAATTCAGTGATAATTCAT
GGTTTTTTTTTTCATTTTTTTACTTTGGAAATTGTAGTACTCAGGTGGTATTTAATGAGAAATG
ATCATTTGAGGTGAATCATAATGCATTTTGAGGACTGCAACTATAACATTTATGACTTTAGCCT
TAAGAAAAGGTCTATTATTCCTTCCTTGCATCCCATGGTATATTAGCAAATAGTTTACAGCCCA
GCACAGCCTTACAAAGTTGTTTTACAAATTTTTATGGAAAACCCTTAACAATTAAAAAAATTGT
ATCATATTACAGTACCTATGAGTTATGATCCCCCTCTGTAAATAAGTTGTCTAATACCAGAAGG
CCAAAGAAAGTCTTGATTTAGCTATTGAATGTGGTGACTTCATAAGATTTCTGTGCAAAAGGTA
AGGTGATATTCCATTCAATAGGCATTCTTTTGATGTCCATGAAAACTAGACTTCCATATTAGCT
TCTTTCAAAAGGCTCATTCCCATTTTATTAAAATGTTTGTACTTGCAAATTTGTGTTTAATGTT
TACTTTGTCTTTTCTTTCTTTAGCATTTAGGTGACTGTTCAGCAGTTTTCTATATGGCCATTGT
TGGCCTTAAACTGCGCTAGTAACAAGCATGGTATTTATCTTGTATGGAAAATAAAAAAGTTTTC
GTAA

hide sequence

RefSeq Acc Id:

XM_006241373 ⟹ XP_006241435

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,843,108 - 54,874,060 (-)	NCBI
mRatBN7.2	7	52,957,207 - 52,988,143 (-)	NCBI
Rnor_6.0	7	60,386,308 - 60,416,957 (-)	NCBI
Rnor_5.0	7	60,387,688 - 60,432,254 (-)	NCBI

Sequence:

show sequence

ATCCGCTGCTGCTGCCTCGGCGGGCCGACCTGCAGGAGGCGGCGGCGGCGGCGGCCGAGGCCGA
GGGAAGATGGCGGACGGTGTGGACCACATAGACATTTACGCGGATGTGGGGGAAGAGTTCAACC
AGGAAGCGGAATATGGTGGGCATGATCAGATAGATTTGTATGATGATGTCATCTCTCCATCTGC
AAATAATGGCGATGCCCCAGAAGACCGGGACTACATGGATACTCTTCCACCAACTGTTGGTGAT
GATGTGGGTAAAGGGGCAGCACCAAACGTTGTCTATACTTACACTGGAAAGAGAATCGCATTGT
ATATTGGAAATCTAACATGGTGGACAACAGATGAGGACCTAACTGAAGCAGTTCATTCTTTGGG
AGTAAATGATATTTTGGAGATAAAATTTTTTGAAAATCGGGCAAATGGACAATCAAAGGGATTT
GCCCTTGTTGGTGTTGGATCTGAAGCATCTTCCAAAAAGTTAATGGATCTTTTGCCTAAAAGAG
AACTTCACGGTCAGAATCCTGTTGTAACTCCATGCAATAAACAGTTCCTGAGTCAGTTTGAAAT
GCAATCCAGGAAAACTACACAATCAGGACAAATGTCTGGGGAAGGTAAAGCTGGTCCTCCAGGA
GGCGGTTCACGCGCAGCATTTCCACAAGGTGGTAGAGGACGGGGCCGTTTTCCAGGGGCTGTTC
CTGGTGGGGACAGATTTCCTGGGCCAGCAGGACCAGGAGGGCCACCTCCACCTTTCCCAGGAAA
TTTGATCAAGCATCTTGTTAAAGGAACTCGGCCTTTGTTCCTGGAAACTAGGATTCCATGGCAT
ATGGGGCACAGCATAGAGGAAATACCCATTTTTGGCCTAAAAGCTGGACAGACTCCACCACGTC
CACCTCTAGGTCCACCTGGCCCACCTGGCCCCCCAGGTCCTCCACCTCCCGGTCAGGTTCTGCC
ACCTCCTCTAGCAGGACCTCCTAATCGAGGAGACCGCCCTCCACCACCAGTTCTTTTTCCTGGA
CAACCTTTTGGGCAGCCTCCGCTGGGTCCACTTCCTCCTGGGCCTCCACCTCCAGTTCCAGGCT
ACGGCCCCCCTCCAGGTCCACCGCCTCCACAGCAGGGACCACCTCCACCTCCAGGCCCCTTTCC
ACCTCGACCACCAGGTCCACTAGGGCCTCCCCTTACACTTGCTCCTCCTCCACATCTTCCGGGA
CCACCTCCAGGTGCCCCACCACCAGCTCCACATGTGAATCCTGCTTTTTTCCCTCCACCAACTA
ATAGTGGCATGCCAACATCAGATAGTCGAGGTCCACCGCCAACAGACCCATATGGCCGACCTCC
ACCATATGATAGGGGTGACTATGGTCCCCCTGGGAGGGAAATGGATACTGCAAGAACACCTCTG
AGTGAAGCTGAGTTTGAAGAAATCATGAATAGAAATCGGGCAATCTCTAGCAGTGCTATTTCAA
GAGCTGTATCTGATGCTAGTGCTGGTGATTATGGGAGTGCTATTGAAACATTGGTAACAGCAAT
TTCTCTAATTAAACAATCCAAAGTATCTGCCGACGATCGCTGCAAAGTTCTTATTAGCTCTTTG
CAAGACTGCCTTCATGGAATTGAGTCCAAGTCCTATGGGTCTGGATCAAGAAGACGTGAACGAT
CAAGAGAAAGGGACCATAGTAGATCACGGGAAAAGAGTCGACGTCATAAATCTCGGAGTAGAGA
TCGCCATGATGATTATTACAGAGAGAGAAGCAGAGAGCGAGAGAGACACCGGGATCGCGATCGG
GATCGTGACCGGGAGCGCGACCGAGAGCGAGAATACCGTCATCGTTAGAAGTAAATATACCTAC
ATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAACATCTGAAAACAGGTAAGC
CATCACAGGTAAATAATTTTGACCTTTTCCTCCTTGAATATTCATGAGTTATCTCTGACTTTTA
GATTTCAGATTTTCATAGTCTTAAAGCAAGAAAAATAATCAAGAGGACTCATTATGTACTTCTA
AATTTGAAAATTGGGATTCTTGTAATCACATACATTGTTTGCATGTGATTTTAAAATATTTATA
AAATATTTATGTGCTTGGATTTTTAAAAATAAAATTTTTATTCTTCCTTCCTAGAATTAATTTA
ATTTGTCCCTGAAACCTTTAAAGAAAATCTAATACTATAATAGGTTACAATACAAAAAGATGTT
TTTCAGCAGTGAAAGAGGTTTTTTTCCCTTTTAAAAATCACTTTTAGATGAGAATTGCTAGCAT
TTGATATTATTTTTAAAGGAACACTATCTTTTATTTGCAAAGAAAGCATAAACTGGATTTAGGG
TTCATATCTAAAAACTTAAAATTGTGCCAAGCCATACATCCCAAGTGAGAAATACTTGGGAATA
ATTTTCTTTGTTTCATTCATAAACCATGATCATTGTCTTTTTTTTCTGTATTTTAAAATTCCTG
TGTACATTTTTTCATAAAGTAGAATGAATTGTCTGTTTATGCTTCATTTTTACATGTAATTTTA
TTTTCTATTTGTGAGCAGTGTTTACTCATGAAGAGTGGGACAAGAGCACTGTGAATCTTGAATG
TGGCAGGTTATCAATTCTGTAAACACATTGGCATTAAAGTAGATTCAAAACAAAGCCTTTATAA
GTATACTTAGAAGTAAATTTTACAGAAACTTACTGAAAATCCAGTCTGAAAATTGTTAATATTT
AAATTGTAATTGGCTTTATCGTGTATAATTTTGTGACTAGTAGTTTCTTTAATCATCACACACA
TACACACTCACCCAAGATCCCTTTTGAAAAAGAAAAAAAATGTAAGGTAATTTTTATGAAATAC
AAGTTTCATAACAGTTTAAGGGCTTTATGAAGTGAGGAAACCCATTTTCTACTTTGTCTTACAT
CTTGAGTATTTATCAAAACCTTTTTACTGGTTATATGTTACACTAAAATTTTAATTTTTAAAAC
ATTTCTCTATTTTAAAATTACTAGAATTGGTACTGTTTGGATATAAAAATTGGTTATTGTATCA
TACAAATCTAAACTAAATTTTAAATGAGGTTTTTTTTTTTTTATTTCTAGTTAAAGTATCCCTT
AGGGTGGATTGGGATCAAGTTAATACTTGAAATGTCTAATTATCTGTTATTTGGTAAGGTACCA
AGTTTACAAGTTGTATTTTTATTTGTTTGTTTATGTATTTATTTTAGACTTTCCAGTTTATCCA
CCATCTTATAGTTACCAAAGATATGATAGTGAAATTGGATACATATTCAGTAATTTAGTGTGTC
CATCAAGGGGCCTCTAAGCCAGTTCATACGTAGCTTTAATTAGCAGTTTTTTTTTAAAAACAGG
TTTTCATAAAATTAATCTAGTAAACTAAGTATGCATTGTTAATTTTACATTGAATTTACACTGC
AGTCAAGAGTAATCACCTAACTATGTCATGATTCGAGTCCCACGTCATTCAGACATTAACTACA
GTTTCTTAGTATGCAGTTTTTTGCAATCAGTGATGTATCATTTCCCAAATCCCATGTTTTGTTT
GTACATTAACCAGAATTGAGATTGAGTTGTAATATTGTTATGTGCCTTCTTCATCCAAGCAAAA
TTTTACAAGTATTTACAGTGGGGGAAAGAAAAAAATATGTTTTCCTGGATTATTGTACCTTTGC
CGTACCAAACAGTATTTATTGTGGAAGTAGATGTAAGAGGGTGGGGTGGGCATAAATACATATA
TTGAAGTGCAAATCTATTTGCAAATTTTATTACCATTATAAGGTCTGTTGACCTCTTTAGAAGT
TTTTAAATATGAGTCCTTTTGAACGTCCTTGTAAATGGAATTAGAAGTACTTCACCAATAAAGT
GAATGTCAGTCTCTGTATAAGTCGATGATGTAACATACTGTCAAGTGATGGTGGTGGTGGTAAA
GGGCAGGTTCTGGAAGTGTGATGTTGACAGCTGTTAATGTCTGTCCCATCCTAAGTTTTTTTGT
GTTTGAACTGTTGAGTAATGTTAATTGCATTCTCATTTGAAAAAAATGTATTAGTTTTTCTAAA
AGTTTTCCATATCGGAGTTCAAATAGGTAATAATACTTCAAGAAAAATAACAGCTTTGTAAATT
TCAATGTATAAATGCATTGTGCTTCATATTCTGTAATTTTTGCCTCTATTCTCAGACCACTCTG
AGCAAAATAAAAGCTGTAAGGTTTTGTTCTCACAGGAATAATGCTACTGTTCAGTCGCAGCCGA
GCTCCTTGCCTTGGTTGTGTTGCTCTGACAACTTGTTTAGAATAGCCCCACTCAGCAGTTTGTG
TTCACAACTGAGTTCTGTGTACTGAAGAACAAAGAAAGCACATTCCTTTTCTAGATGCTTTTTA
TTCAGGGTTTTCTTACTAATTTATGAGATTCTCATGTTCTCAAATGATTACTTTTCCCCCCTAA
GATACTGTATTTGGAATCTGGGTTATAACTCTAAGAGTATGGGCGTGTGATTACTTCTACCATA
AATGTCATGTACTTGGATTTAATTACTGCATAGGATCTAGGATACTTTGTGTTTTTATCCAGGT
TATTATATATAGCTTGTGTTAATTTGGGGGAAAGTCCAAAGAAAATCATTTCTTTTATATTAAG
ATGTTCCATCTTGTTAGGAGTGTTATGTTGAGGCTTTTATGAAAATTAAATTCTTTTTTATTGC
CTGGTGAATGATAACTGTCTGTTAACAAGATTTCCAGAGTACTTCTGCAAGTCTTAGATGACGT
GTTGCTACCTGCCTAGTGTCCCCGAGTTGCTCTCTTGTGGTTTCCATATATCAGCCGCTCCGCT
TCATCTCGCCATGCTGGCTCTCGTTTCTTTTCTGATTTCTCAGAGTTTTAGTATGTGTAAAATC
TATCTACTGTTTTTCTTGATGTGACAAGAGAGGGTAGAAAGTGGCCTCTTGGGTGGATATATAG
TCTGTTTTGCTCACTGTGGTTTAAGAATATAGTTTTGTTTATAAATAATTGATGTTCTGTCTTA
AAAAAATTCAGTGCCAGTGTGAGTCACCTGCCCTCACCTCATCTCAGTGTGATATTTTTGCCAT
TGTTTAGTTTGTATATTGGATTGTTTGGAATACATAATGTTTTAAATAAATTCAGTTAGTATTG
TTTAAAGGAAACCTACTAACCAGTAAGAGTAGAGTAACACATTCATGTTCTGTAAATTTATGCT
TTTGTGTTCTGTAGTTAGCAAGTTCTAACTCTTGACAGTGGGTGAATTCTAAATAACAACCAGC
TTATTTTGAAATATCCATATTTTTTGAGTGACTCTCTTTGGCACAAAGTTTTTTTTCTTTCGTT
TTCTTTTTTGTGATGCAGTATCTTTCTGTGTAGTCAATTGCATAGGATTCTTCATTGTGTATTT
TGTACAGTAATAAAGTGATTTAGTTGAAATGGGGTAAGTATGTTCAGAGAAAAGGGGCTATGAA
CTTTTTTTGTTAACATTAGTAATAAATGGATTTTTTTTAATGTACTGTGTTTTAGTCAATATAA
GAAGAAACTCAGGAAGAGTTAATATGTTTAGATGCTTCTATTGCCTACCTCATGCCCATTCTTC
ATTAAGGAGAAATTTTCAGATATAGAAATATAGATTTTATTAATTTAAAAGCAATTGCATTTCT
AAAATTATGTGAGGATCCTTCAACACATTACTATGAAAACCTGTAAGAGCTGAGTGTGATAGTG
CACACCTGTGACCTTAACACCTAAAGAGACTACTGATGCAGGAGGATGCTGTGAGCTTCAGACC
AGCCTGGTTTACATGTGAAGTTTCATGCTAGCCAGGCCTCTATACTAATACCCTGTTTCAGAAA
TAAGAGCAAACACTCAACATAAAAACCTATGAGAAATCTTTATCAAATAAATATTCAAATGTTT
TACTTAAAAAAGATTAATTTACCATGAGTTTTAAAATATGAATAATACCAAGATTGCATATATA
ATTAACAAACACTCAATTTGAGTCGCTCATAATTGAGAGTTCATTATCTCAAAATATAGGCATT
TCAGTCTATTCAAATTTTACTGCTTGCTTTAGCTTGCAGACTCTAAGGCTAGTTCATGTAACAG
CTGTTTGTGTAGGTTCCTTTTCATAGCTGACAGGTAAAGCAAGTAACTGTGTGGCTTTGACATT
ACAGATTTGATCAAATGCAATTTTGAACATACGGGCATCAAATGTATTTGTTACTTTTAAGCTT
TTTAATATCTTTGTTTATGTAGATGTCTACTTAGACATTCGAGTCTATCATATGGAGTTGGATT
ATTGGAAATGGGTTGTATTGCCTTCAAATTTTGCTTCCGTTTGAGATTGTAAAATTTGTGTTTA
TGTAAAGTGTTTAGAACTAGAAATAAAAGTTTCTAAACTATTCCCTAAATTTTATGTCTGTATG
GTAAAATTTGAAGATTTATCAATTAGTAAAGACCTATCTATAATCTAATGAAGCAAAAGATGAG
TGCTTTGGTTCTGCATAAACGTGTGTTTTATGACCTCACGACAGGATTTCCTCTATACAAGTAG
TAAGTTTCCATTGGGGTCATGGTAATATATATACCCCGTGGCTTTTTGAAAGATTGATATCACC
CTACCCCCTCACCCGGGAATTGTAACATTAAGTAATTTTTCTCTTGGTGACTCATTCTTCATCC
TTTATAACAAAACAAAAATATTAGGGGAGATAACATTTCTTTTTTAGTAGGGTTATGAATTTTC
CGCAATCTTTTTTTGTAGATTAAAATACCTGCCATATCTTTCTCTAATGTTTTTAAATGTCACT
AATGCTGGAAGTGTTAGTGTAGGTAATGGGATTAGTATGTTGTGGAGTCCTGAATTCAGTCTTT
AGCATCAATCCCAGTAAACAAAGATATCTACCAAAATTTTAACCTGTAAAACTAAAACATTTGA
AAACTGATGTTGTAGTTTTTTTCTGTTAAATAATTCCTCTGTATAAGCCTATCAACACATCATG
AAAGTGAAGGTACAAAGGGTGATTTCTAGAATAGTTTAAATGACTCTTTAAACAAGGTAGTTGA
AAGACTCCTTTTGTACTTTTAAGATTTAAGGTTTTACTAGGGAGGATGGATGTGTCTATACACA
CTGATATTCTTAAGATTCTCCCAATAGAGAAATGAACACAAAATTCATAGTTGTTACCAAAATT
CATCCTAATTATAAAACAAAGGATCTTTCAAAATTATTTTTATGACAGAATGCCACTAAGTATT
ATGTGCTTTTGAAAAATATTAAAATATCCCTTAATATTTCTATTTTAAATATTTGGTATAAAAG
TGATCGTTTTTAAATTAATGATTTTTTTTGGACATTTACTTGACATTTACATAAATATGTATTC
CTGAACCTATAGTATCAATTTTATTGTTGGGTTCCCCTCTCCCTCTTTATGTAAGTTTTCGATG
AGACTCATCATTGTAGATACTCATTAGTTTGTGTTGGGCTAGTGGATATAGGTGAAGTAGAAGA
AAGTAATGTCTTAAATTGTATTGTGTCTAAAGATTTGTATGTGGATGTCATATCTAATGACCAT
ATTGAGGTATTTACTTATAAATTCTGTAACATGGAACTCCATTGGTTTATAACAAATTGGCAGA
AGTTCGTGTATGCTGTCAAATACAGTTAATTTGTAAATTTCACTGCATTTTTATATTCAGTTCA
GCATTTGTTAAATACATTGATATGTGGATGAATGAAAAATATCTACATTCAAATCCAAGCATTT
TCCCATTTATTTTGTAGTGTGCATATTTTAGACAATGACTTACGGTTGTTCTCATCATCCCAGA
AACAGTAGCTGCTGTTTTTTCATTTGTTACTGTGACTTTGTTCTTTTTAAAATTACCATTTTTG
CACAAAACAGTGGTCTTCATATGAGAATCACTAAATTTCAAAGGAATTAATACGTAAAGAATGA
AATATAAGAATTTATTTTGAATTTATAAATTCAATTTATAGGAGCATTTCTCCATCATGTAAGC
AGCTACTGTTTGAGTTACTTTTTATTTTGTGTTAGAATCCCTAACAGTGACTAGTTGCACGACT
TGTGTATGTATAGCTAAGCCAACATTTTTTTGTGTATTCTGGGGAATAGCAAAATCTACATCAC
AAATTTTGACACATTACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAGCAGTCTTCACGGG
GAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGATTGAACTGAACCTGTAAGGATTCATGGATA
AACTGAACAGGAATAGATCTGAATAAAGCAAATCTGCATAAATGGTAACCAGTAGCTCTACTTT
TATTTTTTATGTTGCTTAACTGTTTTATTTGAAGGAAACTGTGTGATTTAAAAAGTTAATAGCT
TTTGCAACTTTATTACTGGTTATATATTTGGCCATTATAATGTGCAAGCAATTGGAAAAAGTCA
AGTAAATGCTTGTTTTTATAGTAGTTTGTTCTTGTTAAAATGTTCATATGATAATGTCTGTAAA
CAGCACCAATTTGATTACAATAGATGTAGTGTTGTAATAAACTGTTTAATGGGGCTGATGTGTA
AAGCTGTTCAAGTTATTTGATGTTTACACCTCAGGGAAAGTCTTGTGTTCAGCAATATCTAAAG
ATAATGTTACTATGACAACATTTTTACTGTCCTTTAAAAAAGCATTGCAATAGCGTGTTTGGAT
ATGCATCAATCTAATCTTGCGTTCAGTGAATTAAACATGACTAATTAAGTGTCTATTGCCCTTG
ATTTTGATATTAGAATAGGTGATTACATGGGTATTTAATATTTCTATATTCTGCTTTTCTAGCT
GTTTTTACCTAGTTAGCTTGTGATTTTGCTGAATGGTATGTAAACGTGTAAAAACTGAAATCTG
ACAGAGCAATCCATTCAATGTGTTAGGGGTCAAAAAATTGAAGGTTGTAACATTTTTGGTAAAA
ATTCATGTATTTGCTACAGTAGTGCAGCTTAATTACAACCCAGATATACTGAAATGAAAATTGT
GAACTGCTAGCTTTTAAGATAGATTTTGATAATTCTGATTTCATGCAGTAATTTACTGTTTCAT
GCTGATGGTGCCATAGGCAGTGTAATTATGGCCACACAGCAAGATAAATGAGTAAAGAAAGCCC
TAGTATTGTACTTGATAAAAATTTCTGAGGGGTATGATGTTTATTAACATTGGGTTGTATTCTT
CAGTGTGAATAATGAAAAATTATAGTTACACTGTCTTCATGGTTCGAGGAATTCTGTGTATATT
CCTGTAACTTTGTTGATCTATGCTTGATTAGAGTTAGTTATCAGTTGTTTTTTTTTTTTTAATC
CAGCCTTAATAAAAGGTTGTATTAAACACACCTGGCTAGCATGTGTTCTGCAAAATTAGCAGAA
ACAAACTGTTAATTTGATTGCCTATTTTTATAGGAAGATAAAAATCTGAATTCCTAAAGAATTT
TTAGATAAAGTCCTTAAGCTAATTTGTGTTAAATATGTTTTAAAAGATCTTAAAGTTTACCTAA
ATTTAAGCGCAGTGCCTAAGGCATGTACCATAGGTCGAGAGTGTGCAGCTTGAGACATTTGTAC
TTTTCTTCTTCAGTTTCATCCTTTCTGCTTTTAAAATACTCAAAAATATCCATACCACTGTCAG
TTCATTTTAAAACATTTTGTGAGCAGAGTATTTTTTGCAAGGGATCATTGGTGTTTACCCAAAC
TGTTGTTAGCTCTCAGAAATGATTTTTCTTAAGTTTTAATCTTGTTGAAATGCAATTACCTTTT
GATTTGAGAGTTGTATCAAAATCTATTTTGTTTTGTATATAGGTATTGTAAGTTTTTGTCATTT
CTTAGCTTTTTTAATAGTTTAATTACAATACCCTAATGTGAAGCCGTGTGGACATACATGTGTT
TACAAGGGAGATTAAGATTAGTTGATAGTGAGATTAAAAGGTAAGTACAATGCCCATAGATAGA
ACTTCTCTGAACATTTTTAAAATGGAATCAAAAATACATATACTTGAAATGAAACTGGAGATTT
TGTACTAATTTTAATCCTTTATTACCTTTTTTTCTTTTTTAAAAATGAGTTGGAACTCTTATTG
CTCTCTGTATGTCACCCTCTTGCCCAGCTTATTCTATTACCTGACTTTGGACGCAGACAGAGTG
GACTAGCATTGTTTGCTGCTGCTAGTCCATTATTTTAAGTGTTGTCAGGAAGAAATAAAATAAC
CTTGGTTTGTCTAGTTTTACAGTGTCTCCTCCCTGATAACACATGAATGTCAGCAGTAAAAGTA
AACATTGCAAACCTTGTTTTATTTGTCAAAGCCTTCTGTTGTTGAGGAGTCAGTTTCATTTGAA
AACTGGTTTTTAATGTGTAAAAACAATCCAAAGAGATAAAATTTTACAAAGACACCAAAAAAAA
AAAAAAAAAAAAGGAGAGAGAGAGAGATAGAGACAGGCAGACAGACAGGCAGGCAAATGAACTA
AAGAGAAGAAAAAGTCAGAAGAAAAAAGGAACTAGGGAGAGTTTTTAAGAAATTGTGGTTCATA
TAGTGGCAGTGAAAGCAAGCTTGAGTTTGTCTTGAATCCTAGCATTGCCTAGTGCTGTGCAGTC
ACATTCCTTGCAACTAGTAGTTAAAATTCCAGATGCTTGGTAAAGCGCCCACATGGTATTTCTC
CTGGAGCAGCACTTTGAATTCAATATACTGCTTTGAGGTAAAGGAAATACATTTGTAGAAAGGA
TTCTTTCAGTGTACATTTACATGTGTGTATGTTTTGTCAGCTTTCATCAGCAAGATGAGCAAGA
TTTTAGTGACTTGCTATAGCTATTGATCATACATGTTAGGCCATTTAATGTCTCCTTAACCTAT
AATCTTAAGCAGTTAACTACAATTTGGAATTTACAAATAGCATGTAGCTTAAGGTATTATTTTG
ATTTGATTCTCCTATGGAGACTGTTGCTTTAGTTTTTACTAGTTTAAAGTCAGTTCTAAAAATA
AACATGGAAGTTTTCATGAACGTTGTATAATATTTTATAGTAAAGGGGGGAAATTGTTGAAAAG
GGTAAGACTTTCTCTTTCCCTGTGTTGAAATGTGCCAATAGCCTAAGTACATTCTGTTTCATAC
AATGAGATGCTACTGCAGGACTCCGATTGGAGTGCTCTTAACATTTTAGTTTTGCTACCCAAAT
GGTCATTGCATTGTTTGTATCTTGCAAGGTGGCCCCAATATTGTGTTTTAAGCTTCAGCTTAAG
TTATTTTAAGAGGAAGTTTATGTTCTGATTCTTTACTGAGAATACAGTGTTGAGATTCTTGCTA
TTGCACAGATAAACTGATTTTTAAATTTTATTCATGAACTTCATTTGCATCCCATGGGCCTCTG
TAAATGTTTCCCCTGGTTGTGTGTTCTTACTAAATGCACGCTTTTTCATTGTACATACTAGACA
TTTTTTTGTGCTAAAATATATTAAGTAGGGTTTTTGTAGCAAAGCATTCTATTTTTATGTTCTT
ATAGTGTATGTGTTAACATTAATATTCAGTTTAAACACTGGTGTATTTATTTTTAGCAACTTGA
CTCCTAGAAGCCTTAGACTAATTTTTAAATAAACATTCAACCAAAAATTATGAATTTCTTGAGA
TGTGGCCTTATATGTGGTGTTTTCTGTGTTCATATCGTGAGATTTTTTTTTTAATTTAGATTTT
ATTTAAATCAAGATTTAGAATTAGTTTCATTTTAAGTCAAAACAGAAAGTGTACCATGCGTCTA
GGCTTCTGGGAGGAAGTTCTTACACTCTTCTTTCTTAGCATTAGAAGGAAGCAATATGAATTTA
TGATATTCTCAATATCCAGGCCATTGTATTATGTCCAGGTTGCTTTAGCTTGGTTTTAGCCCAA
TTTAGGTTGGTTTTAGCCCAATGTTTCTTTAAAGTTCCAGGTAGTTGGCATTCACTGAATATAT
AGCTACTACGGTTTTCATATGGGGCGTATGAACTCTTGGTTACATGTAGGCAGATTTTAAAGGC
TTCCTGCTACATTAATTATGTTGTAACGGGAGACATCTAAAATATTAGGTAGCATTGAATTGAA
GTCACACAGGTCTTGAATGGTATTCGTGGATAGTAAATACTACGAGCAGTTTCCATATCAAAGT
ACCCTAAAACTCCACCATGGGAGTAAATCACACTCACTTCATGATTGGATATACCCTTCATTTT
AGTAAAAGTACTTCATTTCAAAAGTTTACACTTTACTGTGTAACACTTCTCAGCATTTCTGTGT
GCAAATTATTTTAAAATTCAGTGATAATTCATGGTTTTTTTTTTCATTTTTTTACTTTGGAAAT
TGTAGTACTCAGGTGGTATTTAATGAGAAATGATCATTTGAGGTGAATCATAATGCATTTTGAG
GACTGCAACTATAACATTTATGACTTTAGCCTTAAGAAAAGGTCTATTATTCCTTCCTTGCATC
CCATGGTATATTAGCAAATAGTTTACAGCCCAGCACAGCCTTACAAAGTTGTTTTACAAATTTT
TATGGAAAACCCTTAACAATTAAAAAAATTGTATCATATTACAGTACCTATGAGTTATGATCCC
CCTCTGTAAATAAGTTGTCTAATACCAGAAGGCCAAAGAAAGTCTTGATTTAGCTATTGAATGT
GGTGACTTCATAAGATTTCTGTGCAAAAGGTAAGGTGATATTCCATTCAATAGGCATTCTTTTG
ATGTCCATGAAAACTAGACTTCCATATTAGCTTCTTTCAAAAGGCTCATTCCCATTTTATTAAA
ATGTTTGTACTTGCAAATTTGTGTTTAATGTTTACTTTGTCTTTTCTTTCTTTAGCATTTAGGT
GACTGTTCAGCAGTTTTCTATATGGCCATTGTTGGCCTTAAACTGCGCTAGTAACAAGCATGGT
ATTTATCTTGTATGGAAAATAAAAAAGTTTTCGTAA

hide sequence

RefSeq Acc Id:

XM_006241374 ⟹ XP_006241436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,843,108 - 54,874,060 (-)	NCBI
mRatBN7.2	7	52,957,207 - 52,988,143 (-)	NCBI
Rnor_6.0	7	60,386,308 - 60,416,957 (-)	NCBI
Rnor_5.0	7	60,387,688 - 60,432,254 (-)	NCBI

Sequence:

show sequence

ATCCGCTGCTGCTGCCTCGGCGGGCCGACCTGCAGGAGGCGGCGGCGGCGGCGGCCGAGGCCGA
GGGAAGATGGCGGACGGTGTGGACCACATAGACATTTACGCGGATGTGGGGGAAGAGTTCAACC
AGGAAGCGGAATATGGTGGGCATGATCAGATAGATTTGTATGATGATGTCATCTCTCCATCTGC
AAATAATGGCGATGCCCCAGAAGACCGGGACTACATGGATACTCTTCCACCAACTGTTGGTGAT
GATGTGGGTAAAGGGGCAGCACCAAACGTTGTCTATACTTACACTGGAAAGAGAATCGCATTGT
ATATTGGAAATCTAACATGGTGGACAACAGATGAGGACCTAACTGAAGCAGTTCATTCTTTGGG
AGTAAATGATATTTTGGAGATAAAATTTTTTGAAAATCGGGCAAATGGACAATCAAAGGGATTT
GCCCTTGTTGGTGTTGGATCTGAAGCATCTTCCAAAAAGTTAATGGATCTTTTGCCTAAAAGAG
AACTTCACGGTCAGAATCCTGTTGTAACTCCATGCAATAAACAGTTCCTGAGTCAGTTTGAAAT
GCAATCCAGGAAAACTACACAATCAGGACAAATGTCTGGGGAAGGTAAAGCTGGTCCTCCAGGA
GGCGGTTCACGCGCAGCATTTCCACAAGGTGGTAGAGGACGGGGCCGTTTTCCAGGGGCTGTTC
CTGGTGGGGACAGATTTCCTGGGCCAGCAGGACCAGGAGGGCCACCTCCACCTTTCCCAGGAAA
TTTGATCAAGCATCTTGTTAAAGGAACTCGGCCTTTGTTCCTGGAAACTAGGATTCCATGGCAT
ATGGGGCACAGCATAGAGGAAATACCCATTTTTGGCCTAAAAGCTGGACAGACTCCACCACGTC
CACCTCTAGGTCCACCTGGCCCACCTGGCCCCCCAGGTCCTCCACCTCCCGGTCAGGTTCTGCC
ACCTCCTCTAGCAGGACCTCCTAATCGAGGAGACCGCCCTCCACCACCAGTTCTTTTTCCTGGA
CAACCTTTTGGGCAGCCTCCGCTGGGTCCACTTCCTCCTGGGCCTCCACCTCCAGTTCCAGGCT
ACGGCCCCCCTCCAGGTCCACCGCCTCCACAGCAGGGACCACCTCCACCTCCAGGCCCCTTTCC
ACCTCGACCACCAGGTCCACTAGGGCCTCCCCTTACACTTGCTCCTCCTCCACATCTTCCGGGA
CCACCTCCAGGTGCCCCACCACCAGCTCCACATGTGAATCCTGCTTTTTTCCCTCCACCAACTA
ATAGTGGCATGCCAACATCAGATAGTCGAGGTCCACCGCCAACAGACCCATATGGCCGACCTCC
ACCATATGATAGGGGTGACTATGGTCCCCCTGGGAGGGAAATGGATACTGCAAGAACACCTCTG
AGTGAAGCTGAGTTTGAAGAAATCATGAATAGAAATCGGGCAATCTCTAGCAGTGCTATTTCAA
GAGCTGTATCTGATGCTAGTGCTGGTGATTATGGGAGTGCTATTGAAACATTGGTAACAGCAAT
TTCTCTAATTAAACAATCCAAAGTATCTGCCGACGATCGCTGCAAAGTTCTTATTAGCTCTTTG
CAAGACTGCCTTCATGGAATTGAGTCCAAGTCCTATGGGTCTGGATCAAGACGTGAACGATCAA
GAGAAAGGGACCATAGTAGATCACGGGAAAAGAGTCGACGTCATAAATCTCGGAGTAGAGATCG
CCATGATGATTATTACAGAGAGAGAAGCAGAGAGCGAGAGAGACACCGGGATCGCGATCGGGAT
CGTGACCGGGAGCGCGACCGAGAGCGAGAATACCGTCATCGTTAGAAGCTGAAGGAAGAGGAAC
ACCTTCCAAGACAAAGCAGTCTTCACGGGGAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGAT
TGAACTGAACCTGTAAGGATTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGCAAATCT
GCATAAATGGTAACCAGTAGCTCTACTTTTATTTTTTATGTTGCTTAACTGTTTTATTTGAAGG
AAACTGTGTGATTTAAAAAGTTAATAGCTTTTGCAACTTTATTACTGGTTATATATTTGGCCAT
TATAATGTGCAAGCAATTGGAAAAAGTCAAGTAAATGCTTGTTTTTATAGTAGTTTGTTCTTGT
TAAAATGTTCATATGATAATGTCTGTAAACAGCACCAATTTGATTACAATAGATGTAGTGTTGT
AATAAACTGTTTAATGGGGCTGATGTGTAAAGCTGTTCAAGTTATTTGATGTTTACACCTCAGG
GAAAGTCTTGTGTTCAGCAATATCTAAAGATAATGTTACTATGACAACATTTTTACTGTCCTTT
AAAAAAGCATTGCAATAGCGTGTTTGGATATGCATCAATCTAATCTTGCGTTCAGTGAATTAAA
CATGACTAATTAAGTGTCTATTGCCCTTGATTTTGATATTAGAATAGGTGATTACATGGGTATT
TAATATTTCTATATTCTGCTTTTCTAGCTGTTTTTACCTAGTTAGCTTGTGATTTTGCTGAATG
GTATGTAAACGTGTAAAAACTGAAATCTGACAGAGCAATCCATTCAATGTGTTAGGGGTCAAAA
AATTGAAGGTTGTAACATTTTTGGTAAAAATTCATGTATTTGCTACAGTAGTGCAGCTTAATTA
CAACCCAGATATACTGAAATGAAAATTGTGAACTGCTAGCTTTTAAGATAGATTTTGATAATTC
TGATTTCATGCAGTAATTTACTGTTTCATGCTGATGGTGCCATAGGCAGTGTAATTATGGCCAC
ACAGCAAGATAAATGAGTAAAGAAAGCCCTAGTATTGTACTTGATAAAAATTTCTGAGGGGTAT
GATGTTTATTAACATTGGGTTGTATTCTTCAGTGTGAATAATGAAAAATTATAGTTACACTGTC
TTCATGGTTCGAGGAATTCTGTGTATATTCCTGTAACTTTGTTGATCTATGCTTGATTAGAGTT
AGTTATCAGTTGTTTTTTTTTTTTTAATCCAGCCTTAATAAAAGGTTGTATTAAACACACCTGG
CTAGCATGTGTTCTGCAAAATTAGCAGAAACAAACTGTTAATTTGATTGCCTATTTTTATAGGA
AGATAAAAATCTGAATTCCTAAAGAATTTTTAGATAAAGTCCTTAAGCTAATTTGTGTTAAATA
TGTTTTAAAAGATCTTAAAGTTTACCTAAATTTAAGCGCAGTGCCTAAGGCATGTACCATAGGT
CGAGAGTGTGCAGCTTGAGACATTTGTACTTTTCTTCTTCAGTTTCATCCTTTCTGCTTTTAAA
ATACTCAAAAATATCCATACCACTGTCAGTTCATTTTAAAACATTTTGTGAGCAGAGTATTTTT
TGCAAGGGATCATTGGTGTTTACCCAAACTGTTGTTAGCTCTCAGAAATGATTTTTCTTAAGTT
TTAATCTTGTTGAAATGCAATTACCTTTTGATTTGAGAGTTGTATCAAAATCTATTTTGTTTTG
TATATAGGTATTGTAAGTTTTTGTCATTTCTTAGCTTTTTTAATAGTTTAATTACAATACCCTA
ATGTGAAGCCGTGTGGACATACATGTGTTTACAAGGGAGATTAAGATTAGTTGATAGTGAGATT
AAAAGGTAAGTACAATGCCCATAGATAGAACTTCTCTGAACATTTTTAAAATGGAATCAAAAAT
ACATATACTTGAAATGAAACTGGAGATTTTGTACTAATTTTAATCCTTTATTACCTTTTTTTCT
TTTTTAAAAATGAGTTGGAACTCTTATTGCTCTCTGTATGTCACCCTCTTGCCCAGCTTATTCT
ATTACCTGACTTTGGACGCAGACAGAGTGGACTAGCATTGTTTGCTGCTGCTAGTCCATTATTT
TAAGTGTTGTCAGGAAGAAATAAAATAACCTTGGTTTGTCTAGTTTTACAGTGTCTCCTCCCTG
ATAACACATGAATGTCAGCAGTAAAAGTAAACATTGCAAACCTTGTTTTATTTGTCAAAGCCTT
CTGTTGTTGAGGAGTCAGTTTCATTTGAAAACTGGTTTTTAATGTGTAAAAACAATCCAAAGAG
ATAAAATTTTACAAAGACACCAAAAAAAAAAAAAAAAAAAAGGAGAGAGAGAGAGATAGAGACA
GGCAGACAGACAGGCAGGCAAATGAACTAAAGAGAAGAAAAAGTCAGAAGAAAAAAGGAACTAG
GGAGAGTTTTTAAGAAATTGTGGTTCATATAGTGGCAGTGAAAGCAAGCTTGAGTTTGTCTTGA
ATCCTAGCATTGCCTAGTGCTGTGCAGTCACATTCCTTGCAACTAGTAGTTAAAATTCCAGATG
CTTGGTAAAGCGCCCACATGGTATTTCTCCTGGAGCAGCACTTTGAATTCAATATACTGCTTTG
AGGTAAAGGAAATACATTTGTAGAAAGGATTCTTTCAGTGTACATTTACATGTGTGTATGTTTT
GTCAGCTTTCATCAGCAAGATGAGCAAGATTTTAGTGACTTGCTATAGCTATTGATCATACATG
TTAGGCCATTTAATGTCTCCTTAACCTATAATCTTAAGCAGTTAACTACAATTTGGAATTTACA
AATAGCATGTAGCTTAAGGTATTATTTTGATTTGATTCTCCTATGGAGACTGTTGCTTTAGTTT
TTACTAGTTTAAAGTCAGTTCTAAAAATAAACATGGAAGTTTTCATGAACGTTGTATAATATTT
TATAGTAAAGGGGGGAAATTGTTGAAAAGGGTAAGACTTTCTCTTTCCCTGTGTTGAAATGTGC
CAATAGCCTAAGTACATTCTGTTTCATACAATGAGATGCTACTGCAGGACTCCGATTGGAGTGC
TCTTAACATTTTAGTTTTGCTACCCAAATGGTCATTGCATTGTTTGTATCTTGCAAGGTGGCCC
CAATATTGTGTTTTAAGCTTCAGCTTAAGTTATTTTAAGAGGAAGTTTATGTTCTGATTCTTTA
CTGAGAATACAGTGTTGAGATTCTTGCTATTGCACAGATAAACTGATTTTTAAATTTTATTCAT
GAACTTCATTTGCATCCCATGGGCCTCTGTAAATGTTTCCCCTGGTTGTGTGTTCTTACTAAAT
GCACGCTTTTTCATTGTACATACTAGACATTTTTTTGTGCTAAAATATATTAAGTAGGGTTTTT
GTAGCAAAGCATTCTATTTTTATGTTCTTATAGTGTATGTGTTAACATTAATATTCAGTTTAAA
CACTGGTGTATTTATTTTTAGCAACTTGACTCCTAGAAGCCTTAGACTAATTTTTAAATAAACA
TTCAACCAAAAATTATGAATTTCTTGAGATGTGGCCTTATATGTGGTGTTTTCTGTGTTCATAT
CGTGAGATTTTTTTTTTAATTTAGATTTTATTTAAATCAAGATTTAGAATTAGTTTCATTTTAA
GTCAAAACAGAAAGTGTACCATGCGTCTAGGCTTCTGGGAGGAAGTTCTTACACTCTTCTTTCT
TAGCATTAGAAGGAAGCAATATGAATTTATGATATTCTCAATATCCAGGCCATTGTATTATGTC
CAGGTTGCTTTAGCTTGGTTTTAGCCCAATTTAGGTTGGTTTTAGCCCAATGTTTCTTTAAAGT
TCCAGGTAGTTGGCATTCACTGAATATATAGCTACTACGGTTTTCATATGGGGCGTATGAACTC
TTGGTTACATGTAGGCAGATTTTAAAGGCTTCCTGCTACATTAATTATGTTGTAACGGGAGACA
TCTAAAATATTAGGTAGCATTGAATTGAAGTCACACAGGTCTTGAATGGTATTCGTGGATAGTA
AATACTACGAGCAGTTTCCATATCAAAGTACCCTAAAACTCCACCATGGGAGTAAATCACACTC
ACTTCATGATTGGATATACCCTTCATTTTAGTAAAAGTACTTCATTTCAAAAGTTTACACTTTA
CTGTGTAACACTTCTCAGCATTTCTGTGTGCAAATTATTTTAAAATTCAGTGATAATTCATGGT
TTTTTTTTTCATTTTTTTACTTTGGAAATTGTAGTACTCAGGTGGTATTTAATGAGAAATGATC
ATTTGAGGTGAATCATAATGCATTTTGAGGACTGCAACTATAACATTTATGACTTTAGCCTTAA
GAAAAGGTCTATTATTCCTTCCTTGCATCCCATGGTATATTAGCAAATAGTTTACAGCCCAGCA
CAGCCTTACAAAGTTGTTTTACAAATTTTTATGGAAAACCCTTAACAATTAAAAAAATTGTATC
ATATTACAGTACCTATGAGTTATGATCCCCCTCTGTAAATAAGTTGTCTAATACCAGAAGGCCA
AAGAAAGTCTTGATTTAGCTATTGAATGTGGTGACTTCATAAGATTTCTGTGCAAAAGGTAAGG
TGATATTCCATTCAATAGGCATTCTTTTGATGTCCATGAAAACTAGACTTCCATATTAGCTTCT
TTCAAAAGGCTCATTCCCATTTTATTAAAATGTTTGTACTTGCAAATTTGTGTTTAATGTTTAC
TTTGTCTTTTCTTTCTTTAGCATTTAGGTGACTGTTCAGCAGTTTTCTATATGGCCATTGTTGG
CCTTAAACTGCGCTAGTAACAAGCATGGTATTTATCTTGTATGGAAAATAAAAAAGTTTTCGTA
A

hide sequence

RefSeq Acc Id:

XM_039078738 ⟹ XP_038934666

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,843,108 - 54,874,060 (-)	NCBI
mRatBN7.2	7	52,957,207 - 52,988,143 (-)	NCBI

RefSeq Acc Id:

XM_039078739 ⟹ XP_038934667

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,843,108 - 54,874,060 (-)	NCBI
mRatBN7.2	7	52,957,207 - 52,988,143 (-)	NCBI

RefSeq Acc Id:

XM_039078740 ⟹ XP_038934668

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,843,108 - 54,887,683 (-)	NCBI
mRatBN7.2	7	52,957,207 - 53,001,783 (-)	NCBI

RefSeq Acc Id:

XM_063263228 ⟹ XP_063119298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,843,108 - 54,874,060 (-)	NCBI

RefSeq Acc Id:

XM_063263230 ⟹ XP_063119300

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,843,108 - 54,874,060 (-)	NCBI

RefSeq Acc Id:

XM_063263231 ⟹ XP_063119301

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,798,452 - 54,874,060 (-)	NCBI

RefSeq Acc Id:

XM_063263232 ⟹ XP_063119302

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,843,108 - 54,874,060 (-)	NCBI

RefSeq Acc Id:

XM_063263233 ⟹ XP_063119303

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,843,108 - 54,887,701 (-)	NCBI

RefSeq Acc Id:

XM_063263234 ⟹ XP_063119304

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,843,108 - 54,887,711 (-)	NCBI

RefSeq Acc Id:

XM_063263235 ⟹ XP_063119305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,843,108 - 54,887,683 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100255	(Get FASTA)	NCBI Sequence Viewer
	NP_001426826	(Get FASTA)	NCBI Sequence Viewer
	NP_001426827	(Get FASTA)	NCBI Sequence Viewer
	NP_001426828	(Get FASTA)	NCBI Sequence Viewer
	NP_001426829	(Get FASTA)	NCBI Sequence Viewer
	XP_006241434	(Get FASTA)	NCBI Sequence Viewer
	XP_006241435	(Get FASTA)	NCBI Sequence Viewer
	XP_006241436	(Get FASTA)	NCBI Sequence Viewer
	XP_038934666	(Get FASTA)	NCBI Sequence Viewer
	XP_038934667	(Get FASTA)	NCBI Sequence Viewer
	XP_038934668	(Get FASTA)	NCBI Sequence Viewer
	XP_063119298	(Get FASTA)	NCBI Sequence Viewer
	XP_063119300	(Get FASTA)	NCBI Sequence Viewer
	XP_063119301	(Get FASTA)	NCBI Sequence Viewer
	XP_063119302	(Get FASTA)	NCBI Sequence Viewer
	XP_063119303	(Get FASTA)	NCBI Sequence Viewer
	XP_063119304	(Get FASTA)	NCBI Sequence Viewer
	XP_063119305	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM16619	(Get FASTA)	NCBI Sequence Viewer
	EDM16620	(Get FASTA)	NCBI Sequence Viewer
	EDM16621	(Get FASTA)	NCBI Sequence Viewer
	EDM16622	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008193
	ENSRNOP00000008193.6
	ENSRNOP00000094948
	ENSRNOP00000094948.1

RefSeq Acc Id:

NP_001100255 ⟸ NM_001106785

- UniProtKB:

D3ZPL1 (UniProtKB/TrEMBL), A6IGS7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDV
GKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFAL
VGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGG
SRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPG
QVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPP
GPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPY
GRPPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETL
VTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRERSRERDHSRSREKSRRHKSR
SRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR

hide sequence

RefSeq Acc Id:

XP_006241436 ⟸ XM_006241374

- Peptide Label:

isoform X2

- Sequence:

show sequence

MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDV
GKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFAL
VGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGG
SRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPGNLIKHLVKGTRPLFLETRIPWHMG
HSIEEIPIFGLKAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQP
FGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPP
PGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGREMDTARTPLSE
AEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQD
CLHGIESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRD
RERDREREYRHR

hide sequence

RefSeq Acc Id:

XP_006241434 ⟸ XM_006241372

- Peptide Label:

isoform X1

- Sequence:

show sequence

MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDV
GKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFAL
VGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGG
SRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPGNLIKHLVKGTRPLFLETRIPWHMG
HSIEEIPIFGLKAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQP
FGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPP
PGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGREMDTARTPLSE
AEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQD
CLHGIESKSYGSGSRRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDR
DRERDREREYRHR

hide sequence

RefSeq Acc Id:

XP_006241435 ⟸ XM_006241373

- Peptide Label:

isoform X1

- Sequence:

show sequence

MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDV
GKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFAL
VGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGG
SRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPGNLIKHLVKGTRPLFLETRIPWHMG
HSIEEIPIFGLKAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQP
FGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPP
PGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGREMDTARTPLSE
AEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQD
CLHGIESKSYGSGSRRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDR
DRERDREREYRHR

hide sequence

Ensembl Acc Id:

ENSRNOP00000008193 ⟸ ENSRNOT00000008193

RefSeq Acc Id:	XP_038934668 ⟸ XM_039078740
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038934667 ⟸ XM_039078739
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038934666 ⟸ XM_039078738
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000094948 ⟸ ENSRNOT00000108117

RefSeq Acc Id:	XP_063119301 ⟸ XM_063263231
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063119304 ⟸ XM_063263234
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063119303 ⟸ XM_063263233
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063119305 ⟸ XM_063263235
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063119302 ⟸ XM_063263232
- Peptide Label:	isoform X4
- UniProtKB:	A6IGS7 (UniProtKB/TrEMBL), D3ZPL1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119300 ⟸ XM_063263230
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063119298 ⟸ XM_063263228
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AMJ9 (UniProtKB/TrEMBL), A6IGS9 (UniProtKB/TrEMBL)

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZPL1-F1-model_v2	AlphaFold	D3ZPL1	1-551	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695214

Promoter ID:

EPDNEW_R5738

Type:

initiation region

Name:

Cpsf6_1

Description:

cleavage and polyadenylation specific factor 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	60,416,959 - 60,417,019	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304640	AgrOrtholog
BioCyc Gene	G2FUF-34005	BioCyc
Ensembl Genes	ENSRNOG00000005927	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000008193	ENTREZGENE
	ENSRNOT00000008193.8	UniProtKB/TrEMBL
	ENSRNOT00000108117	ENTREZGENE
	ENSRNOT00000108117.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	CPSF6	UniProtKB/TrEMBL
	CPSF6/7	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_RNP1	UniProtKB/TrEMBL
KEGG Report	rno:299811	UniProtKB/TrEMBL
NCBI Gene	299811	ENTREZGENE
PANTHER	PTHR23204	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
	RSLD_CPSF6	UniProtKB/TrEMBL
PhenoGen	Cpsf6	PhenoGen
PROSITE	RRM	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005927	RatGTEx
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8I6AMJ9	ENTREZGENE, UniProtKB/TrEMBL
	A6IGS7	ENTREZGENE, UniProtKB/TrEMBL
	A6IGS9	ENTREZGENE, UniProtKB/TrEMBL
	D3ZPL1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-19	Cpsf6	cleavage and polyadenylation specific factor 6	Cpsf6	cleavage and polyadenylation specific factor 6, 68kDa	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-01-10	Cpsf6	cleavage and polyadenylation specific factor 6, 68kDa	Cpsf6	cleavage and polyadenylation specific factor 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-03	Cpsf6	cleavage and polyadenylation specific factor 6	Cpsf6_predicted	cleavage and polyadenylation specific factor 6, 68kDa (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Cpsf6_predicted	cleavage and polyadenylation specific factor 6, 68kDa (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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RGD Manual Annotations

Imported Annotations - KEGG (archival)