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Gene: Map3k6 (mitogen-activated protein kinase kinase kinase 6) Rattus norvegicus

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Symbol:

Map3k6

Name:

mitogen-activated protein kinase kinase kinase 6

RGD ID:

1304625

Description:

Predicted to enable ATP binding activity; MAP kinase kinase kinase activity; and magnesium ion binding activity. Predicted to be involved in JNK cascade and p38MAPK cascade. Orthologous to human MAP3K6 (mitogen-activated protein kinase kinase kinase 6); PARTICIPATES IN p38 MAPK signaling pathway; mitogen activated protein kinase signaling pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,2',4,4'-Tetrabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC313022

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	150,724,029 - 150,736,113 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	150,724,216 - 150,736,111 (+)	Ensembl				GRCr8
mRatBN7.2	5	145,440,126 - 145,452,213 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	145,440,346 - 145,452,212 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	148,143,644 - 148,155,529 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	149,913,247 - 149,925,128 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	149,898,266 - 149,910,136 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	151,435,679 - 151,448,329 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	151,436,464 - 151,448,328 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	155,100,704 - 155,113,502 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	151,873,619 - 151,885,483 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	143,861,707 - 143,873,572 (+)	NCBI		Celera
RGSC_v3.1	5	151,883,659 - 151,908,484 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,6-trinitrobenzenesulfonic acid (EXP)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

AB-Fubinaca (EXP)

acetamide (EXP)

acrolein (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP,ISO)

amosite asbestos (ISO)

anthra[1,9-cd]pyrazol-6(2H)-one (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bromobenzene (EXP)

buta-1,3-diene (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

calciol (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

choline (ISO)

chromium(6+) (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

crocidolite asbestos (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

diazinon (EXP)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (EXP)

dieldrin (EXP)

dimethylarsinic acid (ISO)

dioxygen (EXP,ISO)

diquat (ISO)

doxorubicin (ISO)

doxycycline (ISO)

entinostat (ISO)

ethanol (ISO)

fenvalerate (EXP)

flutamide (EXP)

folic acid (ISO)

furan (EXP)

gallic acid (ISO)

genistein (ISO)

gentamycin (EXP)

graphene oxide (ISO)

GSK-J4 (ISO)

hydrogen sulfide (ISO)

indometacin (ISO)

irinotecan (EXP)

isoprenaline (ISO)

L-methionine (ISO)

mancozeb (ISO)

methapyrilene (EXP)

methotrexate (ISO)

Moniliformin (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (ISO)

naphthalene (ISO)

Nor-9-carboxy-delta9-THC (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

serpentine asbestos (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP,ISO)

thimerosal (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

tributylstannane (ISO)

trichostatin A (ISO)

triclosan (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

JNK cascade (IBA)

MAPK cascade (IEA)

p38MAPK cascade (IBA)

protein phosphorylation (ISO)

Molecular Function

ATP binding (IEA,ISO)

kinase activity (IEA)

magnesium ion binding (IEA,ISO)

MAP kinase kinase kinase activity (IBA,IEA,ISO)

metal ion binding (IEA)

nucleotide binding (IEA)

protein binding (ISO)

protein kinase activity (IEA)

protein serine/threonine kinase activity (IEA)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

mitogen activated protein kinase signaling pathway (IEA)

p38 MAPK signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9875215

Genomics

Comparative Map Data

Map3k6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	150,724,029 - 150,736,113 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	150,724,216 - 150,736,111 (+)	Ensembl				GRCr8
mRatBN7.2	5	145,440,126 - 145,452,213 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	145,440,346 - 145,452,212 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	148,143,644 - 148,155,529 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	149,913,247 - 149,925,128 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	149,898,266 - 149,910,136 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	151,435,679 - 151,448,329 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	151,436,464 - 151,448,328 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	155,100,704 - 155,113,502 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	151,873,619 - 151,885,483 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	143,861,707 - 143,873,572 (+)	NCBI		Celera
RGSC_v3.1	5	151,883,659 - 151,908,484 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

MAP3K6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	27,355,184 - 27,366,961 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	27,355,180 - 27,366,972 (-)	Ensembl			hg38	GRCh38
GRCh37	1	27,681,675 - 27,693,452 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	27,554,257 - 27,565,924 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	27,365,811 - 27,377,479	NCBI
Celera	1	26,078,953 - 26,090,620 (-)	NCBI		Celera
Cytogenetic Map	1	p36.11	NCBI
HuRef	1	25,937,810 - 25,949,477 (-)	NCBI		HuRef
CHM1_1	1	27,796,403 - 27,808,071 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	27,196,422 - 27,208,199 (-)	NCBI		T2T-CHM13v2.0

Map3k6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	132,965,290 - 132,980,240 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	132,968,129 - 132,980,240 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	133,237,979 - 133,252,929 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	133,240,818 - 133,252,929 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	132,796,733 - 132,808,843 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	132,512,894 - 132,525,004 (+)	NCBI		MGSCv36	mm8
Celera	4	131,406,471 - 131,418,534 (+)	NCBI		Celera
Cytogenetic Map	4	D2.3	NCBI
cM Map	4	66.25	NCBI

Map3k6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	6,616,997 - 6,629,206 (-)	Ensembl
ChiLan1.0	NW_004955452	6,616,997 - 6,628,745 (-)	NCBI	ChiLan1.0	ChiLan1.0

MAP3K6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	199,511,898 - 199,525,275 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	198,617,568 - 198,629,253 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	26,607,436 - 26,619,463 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	27,663,250 - 27,674,240 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	27,662,777 - 27,673,987 (-)	Ensembl			panPan2	panpan1.1

MAP3K6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	72,904,611 - 72,916,280 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	72,905,244 - 72,917,057 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	69,481,563 - 69,494,283 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	73,465,488 - 73,478,984 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	73,466,663 - 73,478,356 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	70,291,490 - 70,304,986 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	71,303,724 - 71,315,393 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	72,299,020 - 72,312,519 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Map3k6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	45,842,814 - 45,854,132 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	11,664,725 - 11,679,507 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	11,667,482 - 11,680,042 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MAP3K6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	84,573,329 - 84,585,392 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	84,573,327 - 84,585,428 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	78,144,525 - 78,156,627 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MAP3K6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	105,421,677 - 105,433,902 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	105,421,829 - 105,433,970 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	11,024,967 - 11,036,597 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Map3k6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	11,252,230 - 11,262,930 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624764	11,250,859 - 11,263,378 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Map3k6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	25,001,798 - 25,013,607 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Map3k6
97 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	100
Count of miRNA genes:	84
Interacting mature miRNAs:	87
Transcripts:	ENSRNOT00000012463
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	102105698	152749382	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134369218	156289444	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	149805999	162987697	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

RH130321

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	145,451,946 - 145,452,157 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	151,448,063 - 151,448,273	NCBI	Rnor6.0
Rnor_5.0	5	155,113,236 - 155,113,446	UniSTS	Rnor5.0
RGSC_v3.4	5	151,873,674 - 151,873,884	UniSTS	RGSC3.4
Celera	5	143,873,307 - 143,873,517	UniSTS
RH 3.4 Map	5	977.8	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	91	59	6	352	191	11	140	78	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012463 ⟹ ENSRNOP00000012463

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	150,724,216 - 150,736,111 (+)	Ensembl
mRatBN7.2 Ensembl	5	145,440,346 - 145,452,212 (+)	Ensembl
Rnor_6.0 Ensembl	5	151,436,464 - 151,448,328 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093926 ⟹ ENSRNOP00000080621

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	150,724,216 - 150,736,111 (+)	Ensembl
mRatBN7.2 Ensembl	5	145,440,346 - 145,452,212 (+)	Ensembl

RefSeq Acc Id:

NM_001107909 ⟹ NP_001101379

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,724,245 - 150,736,113 (+)	NCBI
mRatBN7.2	5	145,440,346 - 145,452,212 (+)	NCBI
Rnor_6.0	5	151,436,464 - 151,448,328 (+)	NCBI
Rnor_5.0	5	155,100,704 - 155,113,502 (+)	NCBI
RGSC_v3.4	5	151,873,619 - 151,885,483 (-)	RGD
Celera	5	143,861,707 - 143,873,572 (+)	RGD

Sequence:

show sequence

TCAGGGTGTAGCACGCTGCCGGTTGAATTCCCAGGATCCTTCTGTGACCTGTGAGCCGAGGATT
ACTGGGTACCCCAGATTCCCAGAACCCAGTCCTGGATTGCAGATCTCTAAGGACCGTGAAAGAT
TAAGCAAAGATTTCTCTCTGGATTTAAGATTTCCGGAACAGGACGTCCAGCCCATCTCCGGATC
CCGGCTGGATCCACACCTTCAGCCTCGTGCCCTGTCCCGGGTCTCCCGCGCCCGGCGTCCCGCG
CTTGAGCGCCCCCGCATGGCGGGGCCGTGTCCCGGGGCCGGGGTTCTAGAACGGGCGGGCAGCT
GCTGGCAGGACCCTCTGGCGGAGGCGCTGAGCCGGGGCCGCTCGTCTCCTGCGGTCGCCGGTCG
GGGCTGCGCGCGGAGCCGGCCTCTCAGTGTGGTCTACGTGTTGACCCGCGAGCCTGGACCCGGG
GTGGAGCCCGGGTCGGGAACCGAGGCAGAGCCGCTGCCGCTGCGATGCCTGCGCGAGGCCTGTG
CTCAGCTCCAGAGCACGCGGCCACCCCCGCAACTGCGCAGCCTGCCCTTTGCGACGCTGGCGCT
AGGCGACACCGCTGCGCTAGACTCCTTCTACAACGCGGACGTAGTGGTGCTGGAGGTGAGCAAC
TCCCTGGCACAGCCTTCCTTGTTCTACCACCTCGGCGTGCGTGAGAGCTTCAGCATGACCAACA
ATGTGCTCCTCTGTTCCCAGGCAGAGCTCCCTGACCTGCAGGCCCTTCGTGAGGATGTTTTCCA
GAAGAACTCGGATTGCGTTGGCAGCTACACACTGATTCCTTATGTTGTGACAGCCACTGGCCGG
GTCTTATGTGGCGATGCAGGCCTCCTGAGGGGCATAGCCGATGGGCTAGTACAGGCTGGGGTGG
GCACTGAGGCCCTCCTCACGCCCCTGGTGGGCCGGCTTGTCCGTCTCTTGGAGGCCACACCCAC
AGACTCTTGCGGCTACTTCCGGGAGACCATTCGTCAAGATATCCGGAAGGCACGGGAGCGGTTC
AGCGGGCAGCAGCTGAGGCAGGAGCTGGCTCGCCTGCAGCGGAGGCTGGACAGCGTAGAGCTGT
TGAGCCCCGACATCATCATGAATCTGCTTCTGTCATACCGCGACGTCCAGGACTACTCCGCCAT
CATTGAGCTGGTGGAGACGCTGCAGGCTTTGCCCACCTGTGATGTGGCCGAACAGCACAATGTC
TGCTTCCACTACACGTTTGCCCTCAACAGGAGGAACAGGCCTGGGGACCGTGAGAAGGCCCTGG
CTGTCCTTCTGCCATTGGTGAAGCATGAAGGCCCCGTGGCTCCAGACCTGTACTGCATGTGTGG
TCGTATCTACAAGGACATGTTCTTCAGCTCCAGCTTCCAAAGTACTGGGCACCTGGAGCAGGCC
TATCACTGGTACCGCAAGGCATTTGATGTGGAGCCCAGCCTACACTCGGGCATCAATGCAGCTG
TGCTGCTCATTGCAGCTGGGAAACACTTTGACGACTCTGAGGAGCTCCAGCTGATAGGCATGAA
GCTGGGCTGCCTGTTAGCCCGCAAAGGCTGTGTGGAGAAGATGCAGTATTACTGGGACGTGGGG
TTCTACCTGGGAGCCCAGATTCTTGCCAACGACCCCATCCAGGTGGTGCTGGCTGCAGAACAAC
TATACAAGCTCAATGCCCCCATATGGTACTTGGTGTCAGTGATGGAGACCTTCTTACTGTACCA
GCATTTCAGACCCACACCAGAGCCCTCGGGAGGACCCGTGCTGCGAGCTCACTTTTGGCTCCAT
TTCTTGCTACAATCCTGCCAGCCTTTCAAGGCGACCCCTCCTCAGGAGGACCAGTGCCTGGTAC
TGGTGCTGGAGATAAACAAGGTTCTGCTGCCTGCCAGACTTGAGATTCAGGGAGCCGACCCCAT
GAGCGCAGTGACCCTAAGCTTGCTGGAGCCAGAGACTCAGGATGATCCTTCCAGCTGGACCTTC
CCAGTCACCTCCATCTGTGGGATCAGCGCCTCCAAGCTGGACCAGCGCTGCTGCTTCCTGTACG
CACTTCCTCCGGCCCAGGACGTCCAGCTGTGCTTTCCCAGCGTAGAGCGCTGCCGGTGGTTCTG
TAGCCAAATTCAGGTCTTGGTGATGAATCCAGATTCCTCGGCGCCCACTGAGGAGGCAGAAGGC
ACAAGGGAGGTGCTGGAGTTTGATTATGAATATTCGGAGACGGGTGAGCGGCTGGTGCTGGGCA
AAGGCACGTACGGGGTGGTGTATGCTGGCCGCGACAGGCACACGAGGGTACGAATCGCCATCAA
AGAGATCCCAGAGAGAGATAGCAGATTCTCTCAGCCTCTGCACGAGGAGATCGCTCTCCACAAA
CGCCTTCGCCACAAGAATATAGTGCGCTATTTGGGCTCAGCCAGCCAGGGCGGCTACCTCAAGA
TCTTCATGGAGGAAGTGCCTGGAGGCAGCCTGTCCTCCTTGCTTAGGTCAGTGTGGGGACCCCT
AAAGGACAACGAGAGTACTATTAGCTTCTACACGCGTCAGATCCTGCAAGGACTTAGCTACCTG
CATGAGAACCGCATTGTTCACCGAGACATCAAGGGGGACAATGTACTGATCAACACCTTCAGTG
GGCTGCTCAAGATTTCTGACTTTGGCACCTCCAAGCGGCTGGCAGGCATCACACCCTGCACGGA
GACTTTCACAGGGACCCTGCAGTATATGGCCCCAGAAATCATTGACCAGGGCCCACGAGGATAT
GGAAAGGCGGCTGACATCTGGTCTCTGGGCTGCACTGTGATTGAGATGGCCACAGGTTGGCCGC
CCTTTCACGAACTAGGGAGCCCGCAGGCTGCCATGTTTCAGGTGGGCATGTACAAGGTACATCC
ACCAGTGCCAAGTTCCCTGTCAGCTGAGGCCCAAGCCTTCCTCCTCCGAACTTTTGAGCCAGAT
CCCCGCCTCCGAGCCAGTGCCCAAGAGCTGTTGGGAGACCCCTTCCTGCAACCAGGGAAGAGGA
GCCGCAGCCCTGGCTCTCCTCGGCACACTCCCCGGCCCTCAGGCACCCCTTCCAGTACTTCCAG
TCCTTCAGCTGACTCAGCCACACAGTCTCAGACATTCCCAAGGCCCCAGGCACCCTCTCAGCAC
CCACCCAGCCCTCCGAAGCGCTGCCTTAGTTATGGGGACACCAGTCAGCTCCGTGTGCCCGAGG
AATCCGCTGCCGAGGAACCCGCGTCCCCAGAAGAGAGTTCAGGCCTGAGCCTGCTGCACCAGGA
GAGCAAGCGCCGAGCCATGCTGGCTGCAGTGCTGGAACAGGAGGTGCCCATACTAGCAGAGAAT
CTCCTGGATCAGGAACAGGATTCTCGACTCAGCAGGAATCATGTGGAACTTCTGCTTCGGTGCC
TCGGGGCACAAATCCATACTCCTAACCGCCGGCAGCTGGCCCAGGAGCTGCGGGCCCTGCAAGC
TCAACTGCGGGCCCAGAGCCTGAGCCCTGCGCTTTTGAAGGGGCCGCTCTTCGCCTTTCCAGAC
GCGGTGAAGCAGATCCTCCGCAGACGCCAGATCCGCCCACACTGGATGTTCGTGTTGGACTCGC
TGCTCAGCCGGGCAGTCCGGGCGGCGCTGGCCGTACTGGACGCGGAGGCAGAGAAGAAAGCGGT
CTCACCGAAGTCAGAGGAGTGGAGTCAAGGGGAGTCCCAGCAGAAACCGCTGGAGAGCCAGCCG
CCGCTGCAGAGTCAGCTCCCACCAGAGCAGGAACCTCCATCCCTGATGATACAGCTGGGTCTCT
TGCGAGCTGAGACTGACAGGCTTCGGGACATTCTGGCTGAGAAGGAACGTGAGTGCCAGGCCCT
CGTGCAACAGGCCCTGCATCGGGTGCACGCAGAGACCAGGACGTATGCCCTGGCTTCAGAGACC
CCGGCCACTCTCCCAAAGGACCAGAAACTGGTGCAGTGGCTACAGGACCTGAGTGTAGATCCAA
CCACTATCCAAACGCTCCTGAGCCATAGCTTTACCCTTCAAACCCTGCTCACCTGTGCCACTCA
GGATGACCTCGTCTACACCAGAATCAGGGGAGGGATGGTATGCAGAATTTGGAGAGCCATCTTG
GCACAGCGAGCAGGAGCCACGTCGGTCACCCCTGGACCCCGGGATGCTGAGTGATGACATCAAG
GGACACAGACATGGATGGATGAACAGAGGAGACACAAGCAGCTTTTGACGCACCCGTCCCAGAA
CCTAGGAGCAAACTGCAGGGCCCAGGACGAACCCCAATGGGTGGAACTAACTAGGGAGGCACCC
AAAAGACACTACATACGACCAAAGACTATTAAACAGAACACTTGCTACCAT

hide sequence

RefSeq Acc Id:

XM_006239019 ⟹ XP_006239081

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,724,030 - 150,736,112 (+)	NCBI
mRatBN7.2	5	145,440,127 - 145,452,213 (+)	NCBI
Rnor_6.0	5	151,435,679 - 151,448,329 (+)	NCBI
Rnor_5.0	5	155,100,704 - 155,113,502 (+)	NCBI

Sequence:

show sequence

CTGGGAACCAAACCAGGGTCCTTTGGAAGAGCAGCAAATGCCAAATGCTCTTAACAGCTGTGCT
GTCTCTCAAGCCCCAAGCTCCACCATAATAAATGATTATGAAACATGGTCCTAACCTCAGATTC
CCAAAGTCTGTTTCAGGGTCCTCTAAGGTTTATACCAACTTAGTCACTATTTCATACTAGGACA
TTAAAGGTCCTTGGTGATTCGAAGCTGGGATACTCTTGTAACCCAAAAAGCCGAGGCTTCTGGA
GTTCCTTCAAGGAATAGATAGGAAGTTTTCAGTAGAAGTGCTTCTCAGTTCCATGGGCAACTTT
TGGGTGGACGGAGGATAAGTTCAGCAAGGCTTCCCAGTAAGTGACGCTATGAGGAAAGCAGCTT
GTCAACGCTCAGACCTCTACCAGCAGGAACGTTTACATGTGATACCTATTACTACTCACAATGT
TTTGACACCTCCCTCCCTCCCCAACCTCCCTGCTCCGCGTCCATTCATTCACTAGATCCCTGCA
GGGCGGGGTCGTCCTGTTTCCTATCCCTGGCCTGGGCACACATCCTACGAGCGCCTGCAGTGAG
TATTCAACAGTGTTTGGCCCGAATAGGGGCACAGGCTGTTCCGGAAGTGGACAGTGTCAGAGGT
TCTAGCCGGAGAGGAGGGAGGGAGAGCCACTGGGGAGCTTCATTGCCCCAGGGCCGAGGGTGGA
GCCTTTCCCAGTCGGGAAAGGGCTGGGTCCAGCCTACATGTGAGGGCAGGACAGAGTGACTGCC
AGCGCTCCCTTGAGAAGTCAGGGTGTAGCACGCTGCCGGTTGAATTCCCAGGATCCTTCTGTGA
CCTGTGAGCCGAGGATTACTGGGTACCCCAGATTCCCAGAACCCAGTCCTGGATTGCAGATCTC
TAAGGACCGTGAAAGATTAAGCAAAGATTTCTCTCTGGATTTAAGATTTCCGGAACAGGACGTC
CAGCCCATCTCCGGATCCCGGCTGGATCCACACCTTCAGCCTCGTGCCCTGTCCCGGGTCTCCC
GCGCCCGGCGTCCCGCGCTTGAGCGCCCCCGCATGGCGGGGCCGTGTCCCGGGGCCGGGGTTCT
AGAACGGGCGGGCAGCTGCTGGCAGGACCCTCTGGCGGAGGCGCTGAGCCGGGGCCGCTCGTCT
CCTGCGGTCGCCGGTCGGGGCTGCGCGCGGAGCCGGCCTCTCAGTGTGGTCTACGTGTTGACCC
GCGAGCCTGGACCCGGGGTGGAGCCCGGGTCGGGAACCGAGGCAGAGCCGCTGCCGCTGCGATG
CCTGCGCGAGGCCTGTGCTCAGCTCCAGAGCACGCGGCCACCCCCGCAACTGCGCAGCCTGCCC
TTTGCGACGCTGGCGCTAGGCGACACCGCTGCGCTAGACTCCTTCTACAACGCGGACGTAGTGG
TGCTGGAGGTGAGCAACTCCCTGGCACAGCCTTCCTTGTTCTACCACCTCGGCGTGCGTGAGAG
CTTCAGCATGACCAACAATGTGCTCCTCTGTTCCCAGGCAGAGCTCCCTGACCTGCAGGCCCTT
CGTGAGGATGTTTTCCAGAAGAACTCGGATTGCGTTGGCAGCTACACACTGATTCCTTATGTTG
TGACAGCCACTGGCCGGGTCTTATGTGGCGATGCAGGCCTCCTGAGGGGCATAGCCGATGGGCT
AGTACAGGCTGGGGTGGGCACTGAGGCCCTCCTCACGCCCCTGGTGGGCCGGCTTGTCCGTCTC
TTGGAGGCCACACCCACAGACTCTTGCGGCTACTTCCGGGAGACCATTCGTCAAGATATCCGGA
AGGCACGGGAGCGGTTCAGCGGGCAGCAGCTGAGGCAGGAGCTGGCTCGCCTGCAGCGGAGGCT
GGACAGCGTAGAGCTGTTGAGCCCCGACATCATCATGAATCTGCTTCTGTCATACCGCGACGTC
CAGGACTACTCCGCCATCATTGAGCTGGTGGAGACGCTGCAGGCTTTGCCCACCTGTGATGTGG
CCGAACAGCACAATGTCTGCTTCCACTACACGTTTGCCCTCAACAGGAGGAACAGGCCTGGGGA
CCGTGAGAAGGCCCTGGCTGTCCTTCTGCCATTGGTGAAGCATGAAGGCCCCGTGGCTCCAGAC
CTGTACTGCATGTGTGGTCGTATCTACAAGGACATGTTCTTCAGCTCCAGCTTCCAAAGTACTG
GGCACCTGGAGCAGGCCTATCACTGGTACCGCAAGGCATTTGATGTGGAGCCCAGCCTACACTC
GGGCATCAATGCAGCTGTGCTGCTCATTGCAGCTGGGAAACACTTTGACGACTCTGAGGAGCTC
CAGCTGATAGGCATGAAGCTGGGCTGCCTGTTAGCCCGCAAAGGCTGTGTGGAGAAGATGCAGT
ATTACTGGGACGTGGGGTTCTACCTGGGAGCCCAGATTCTTGCCAACGACCCCATCCAGGTGGT
GCTGGCTGCAGAACAACTATACAAGCTCAATGCCCCCATATGGTACTTGGTGTCAGTGATGGAG
ACCTTCTTACTGTACCAGCATTTCAGACCCACACCAGAGCCCTCGGGAGGACCCGTGCTGCGAG
CTCACTTTTGGCTCCATTTCTTGCTACAATCCTGCCAGCCTTTCAAGGCGACCCCTCCTCAGGA
GGACCAGTGCCTGGTACTGGTGCTGGAGATAAACAAGGTTCTGCTGCCTGCCAGACTTGAGATT
CAGGGAGCCGACCCCATGAGCGCAGTGACCCTAAGCTTGCTGGAGCCAGAGACTCAGGATGATC
CTTCCAGCTGGACCTTCCCAGTCACCTCCATCTGTGGGATCAGCGCCTCCAAGCTGGACCAGCG
CTGCTGCTTCCTGTACGCACTTCCTCCGGCCCAGGACGTCCAGCTGTGCTTTCCCAGCGTAGAG
CGCTGCCGGTGGTTCTGTAGCCAAATTCAGGTCTTGGTGATGAATCCAGATTCCTCGGCGCCCA
CTGAGGAGGCAGAAGGCACAAGGGAGGTGCTGGAGTTTGATTATGAATATTCGGAGACGGGTGA
GCGGCTGGTGCTGGGCAAAGGCACGTACGGGGTGGTGTATGCTGGCCGCGACAGGCACACGAGG
GTACGAATCGCCATCAAAGAGATCCCAGAGAGAGATAGCAGATTCTCTCAGCCTCTGCACGAGG
AGATCGCTCTCCACAAACGCCTTCGCCACAAGAATATAGTGCGCTATTTGGGCTCAGCCAGCCA
GGGCGGCTACCTCAAGATCTTCATGGAGGAAGTGCCTGGAGGCAGCCTGTCCTCCTTGCTTAGG
TCAGTGTGGGGACCCCTAAAGGACAACGAGAGTACTATTAGCTTCTACACGCGTCAGATCCTGC
AAGGACTTAGCTACCTGCATGAGAACCGCATTGTTCACCGAGACATCAAGGGGGACAATGTACT
GATCAACACCTTCAGTGGGCTGCTCAAGATTTCTGACTTTGGCACCTCCAAGCGGCTGGCAGGC
ATCACACCCTGCACGGAGACTTTCACAGGGACCCTGCAGTATATGGCCCCAGAAATCATTGACC
AGGGCCCACGAGGATATGGAAAGGCGGCTGACATCTGGTCTCTGGGCTGCACTGTGATTGAGAT
GGCCACAGGTTGGCCGCCCTTTCACGAACTAGGGAGCCCGCAGGCTGCCATGTTTCAGGTGGGC
ATGTACAAGGTACATCCACCAGTGCCAAGTTCCCTGTCAGCTGAGGCCCAAGCCTTCCTCCTCC
GAACTTTTGAGCCAGATCCCCGCCTCCGAGCCAGTGCCCAAGAGCTGTTGGGAGACCCCTTCCT
GCAACCAGGGAAGAGGAGCCGCAGCCCTGGCTCTCCTCGGCACACTCCCCGGCCCTCAGGCACC
CCTTCCAGTACTTCCAGTCCTTCAGCTGACTCAGCCACACAGTCTCAGACATTCCCAAGGCCCC
AGGCACCCTCTCAGCACCCACCCAGCCCTCCGAAGCGCTGCCTTAGTTATGGGGACACCAGTCA
GCTCCGTGTGCCCGAGGAATCCGCTGCCGAGGAACCCGCGTCCCCAGAAGAGAGTTCAGGCCTG
AGCCTGCTGCACCAGGAGAGCAAGCGCCGAGCCATGCTGGCTGCAGTGCTGGAACAGGAGGTGC
CCATACTAGCAGAGAATCTCCTGGATCAGGAACAGGATTCTCGACTCAGCAGGAATCATGTGGA
ACTTCTGCTTCGGTGCCTCGGGGCACAAATCCATACTCCTAACCGCCGGCAGCTGGCCCAGGAG
CTGCGGGCCCTGCAAGCTCAACTGCGGGCCCAGAGCCTGAGCCCTGCGCTTTTGAAGGGGCCGC
TCTTCGCCTTTCCAGACGCGGTGAAGCAGATCCTCCGCAGACGCCAGATCCGCCCACACTGGAT
GTTCGTGTTGGACTCGCTGCTCAGCCGGGCAGTCCGGGCGGCGCTGGCCGTACTGGACGCGGAG
GCAGAGAAGAAAGCGGTCTCACCGAAGTCAGAGGAGTGGAGTCAAGGGGAGTCCCAGCAGAAAC
CGCTGGAGAGCCAGCCGCCGCTGCAGAGTCAGCTCCCACCAGAGCAGGAACCTCCATCCCTGAT
GATACAGCTGGGTCTCTTGCGAGCTGAGACTGACAGGCTTCGGGACATTCTGGCTGAGAAGGAA
CGTGAGTGCCAGGCCCTCGTGCAACAGGCCCTGCATCGGGTGCACGCAGAGACCAGGACGTATG
CCCTGGCTTCAGAGACCCCGGCCACTCTCCCAAAGGACCAGAAACTGGTGCAGTGGCTACAGGA
CCTGAGTGTAGATCCAACCACTATCCAAACGCTCCTGAGCCATAGCTTTACCCTTCAAACCCTG
CTCACCTGTGCCACTCAGGATGACCTCGTCTACACCAGAATCAGGTACATCTTGGGCCCTCCGG
CGGTGAACCACGTAGCACCCGCTAGCAATATGCGGGCATCCCCTGCCCTCTGGGCCTGCCTTGA
TTCCTCCCTGAAAACAACTGGGGAACAAGTTCTCCTGGGCATAGCGGTTCCTAACGAGAGAGCG
GGGGCTGCCTTCTGGCTGAATTACATTGATCCCTGATGTCCCCAGGGGAGGGATGGTATGCAGA
ATTTGGAGAGCCATCTTGGCACAGCGAGCAGGAGCCACGTCGGTCACCCCTGGACCCCGGGATG
CTGAGTGATGACATCAAGGGACACAGACATGGATGGATGAACAGAGGAGACACAAGCAGCTTTT
GACGCACCCGTCCCAGAACCTAGGAGCAAACTGCAGGGCCCAGGACGAACCCCAATGGGTGGAA
CTAACTAGGGAGGCACCCAAAAGACACTACATACGACCAAAGACTATTAAACAGAACACTTGCT
ACCATA

hide sequence

RefSeq Acc Id:

XM_006239020 ⟹ XP_006239082

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,724,029 - 150,736,112 (+)	NCBI
mRatBN7.2	5	145,440,126 - 145,452,213 (+)	NCBI
Rnor_6.0	5	151,435,679 - 151,448,329 (+)	NCBI
Rnor_5.0	5	155,100,704 - 155,113,502 (+)	NCBI

Sequence:

show sequence

CTGGGAACCAAACCAGGGTCCTTTGGAAGAGCAGCAAATGCCAAATGCTCTTAACAGCTGTGCT
GTCTCTCAAGCCCCAAGCTCCACCATAATAAATGATTATGAAACATGGTCCTAACCTCAGATTC
CCAAAGTCTGTTTCAGGGTCCTCTAAGGTTTATACCAACTTAGTCACTATTTCATACTAGGACA
TTAAAGGTCCTTGGTGATTCGAAGCTGGGATACTCTTGTAACCCAAAAAGCCGAGGCTTCTGGA
GTTCCTTCAAGGAATAGATAGGAAGTTTTCAGTAGAAGTGCTTCTCAGTTCCATGGGCAACTTT
TGGGTGGACGGAGGATAAGTTCAGCAAGGCTTCCCAGTAAGTGACGCTATGAGGAAAGCAGCTT
GTCAACGCTCAGACCTCTACCAGCAGGAACGTTTACATGTGATACCTATTACTACTCACAATGT
TTTGACACCTCCCTCCCTCCCCAACCTCCCTGCTCCGCGTCCATTCATTCACTAGATCCCTGCA
GGGCGGGGTCGTCCTGTTTCCTATCCCTGGCCTGGGCACACATCCTACGAGCGCCTGCAGTGAG
TATTCAACAGTGTTTGGCCCGAATAGGGGCACAGGCTGTTCCGGAAGTGGACAGTGTCAGAGGT
TCTAGCCGGAGAGGAGGGAGGGAGAGCCACTGGGGAGCTTCATTGCCCCAGGGCCGAGGGTGGA
GCCTTTCCCAGTCGGGAAAGGGCTGGGTCCAGCCTACATGTGAGGGCAGGACAGAGTGACTGCC
AGCGCTCCCTTGAGAAGTCAGGGTGTAGCACGCTGCCGGTTGAATTCCCAGGATCCTTCTGTGA
CCTGTGAGCCGAGGATTACTGGGTACCCCAGATTCCCAGAACCCAGTCCTGGATTGCAGATCTC
TAAGGACCGTGAAAGATTAAGCAAAGATTTCTCTCTGGATTTAAGATTTCCGGAACAGGACGTC
CAGCCCATCTCCGGATCCCGGCTGGATCCACACCTTCAGCCTCGTGCCCTGTCCCGGGTCTCCC
GCGCCCGGCGTCCCGCGCTTGAGCGCCCCCGCATGGCGGGGCCGTGTCCCGGGGCCGGGGTTCT
AGAACGGGCGGGCAGCTGCTGGCAGGACCCTCTGGCGGAGGCGCTGAGCCGGGGCCGCTCGTCT
CCTGCGGTCGCCGGTCGGGGCTGCGCGCGGAGCCGGCCTCTCAGTGTGGTCTACGTGTTGACCC
GCGAGCCTGGACCCGGGGTGGAGCCCGGGTCGGGAACCGAGGCAGAGCCGCTGCCGCTGCGATG
CCTGCGCGAGGCCTGTGCTCAGCTCCAGAGCACGCGGCCACCCCCGCAACTGCGCAGCCTGCCC
TTTGCGACGCTGGCGCTAGGCGACACCGCTGCGCTAGACTCCTTCTACAACGCGGACGTAGTGG
TGCTGGAGGTGAGCAACTCCCTGGCACAGCCTTCCTTGTTCTACCACCTCGGCGTGCGTGAGAG
CTTCAGCATGACCAACAATGTGCTCCTCTGTTCCCAGGCAGAGCTCCCTGACCTGCAGGCCCTT
CGTGATTGCGTTGGCAGCTACACACTGATTCCTTATGTTGTGACAGCCACTGGCCGGGTCTTAT
GTGGCGATGCAGGCCTCCTGAGGGGCATAGCCGATGGGCTAGTACAGGCTGGGGTGGGCACTGA
GGCCCTCCTCACGCCCCTGGTGGGCCGGCTTGTCCGTCTCTTGGAGGCCACACCCACAGACTCT
TGCGGCTACTTCCGGGAGACCATTCGTCAAGATATCCGGAAGGCACGGGAGCGGTTCAGCGGGC
AGCAGCTGAGGCAGGAGCTGGCTCGCCTGCAGCGGAGGCTGGACAGCGTAGAGCTGTTGAGCCC
CGACATCATCATGAATCTGCTTCTGTCATACCGCGACGTCCAGGACTACTCCGCCATCATTGAG
CTGGTGGAGACGCTGCAGGCTTTGCCCACCTGTGATGTGGCCGAACAGCACAATGTCTGCTTCC
ACTACACGTTTGCCCTCAACAGGAGGAACAGGCCTGGGGACCGTGAGAAGGCCCTGGCTGTCCT
TCTGCCATTGGTGAAGCATGAAGGCCCCGTGGCTCCAGACCTGTACTGCATGTGTGGTCGTATC
TACAAGGACATGTTCTTCAGCTCCAGCTTCCAAAGTACTGGGCACCTGGAGCAGGCCTATCACT
GGTACCGCAAGGCATTTGATGTGGAGCCCAGCCTACACTCGGGCATCAATGCAGCTGTGCTGCT
CATTGCAGCTGGGAAACACTTTGACGACTCTGAGGAGCTCCAGCTGATAGGCATGAAGCTGGGC
TGCCTGTTAGCCCGCAAAGGCTGTGTGGAGAAGATGCAGTATTACTGGGACGTGGGGTTCTACC
TGGGAGCCCAGATTCTTGCCAACGACCCCATCCAGGTGGTGCTGGCTGCAGAACAACTATACAA
GCTCAATGCCCCCATATGGTACTTGGTGTCAGTGATGGAGACCTTCTTACTGTACCAGCATTTC
AGACCCACACCAGAGCCCTCGGGAGGACCCGTGCTGCGAGCTCACTTTTGGCTCCATTTCTTGC
TACAATCCTGCCAGCCTTTCAAGGCGACCCCTCCTCAGGAGGACCAGTGCCTGGTACTGGTGCT
GGAGATAAACAAGGTTCTGCTGCCTGCCAGACTTGAGATTCAGGGAGCCGACCCCATGAGCGCA
GTGACCCTAAGCTTGCTGGAGCCAGAGACTCAGGATGATCCTTCCAGCTGGACCTTCCCAGTCA
CCTCCATCTGTGGGATCAGCGCCTCCAAGCTGGACCAGCGCTGCTGCTTCCTGTACGCACTTCC
TCCGGCCCAGGACGTCCAGCTGTGCTTTCCCAGCGTAGAGCGCTGCCGGTGGTTCTGTAGCCAA
ATTCAGGTCTTGGTGATGAATCCAGATTCCTCGGCGCCCACTGAGGAGGCAGAAGGCACAAGGG
AGGTGCTGGAGTTTGATTATGAATATTCGGAGACGGGTGAGCGGCTGGTGCTGGGCAAAGGCAC
GTACGGGGTGGTGTATGCTGGCCGCGACAGGCACACGAGGGTACGAATCGCCATCAAAGAGATC
CCAGAGAGAGATAGCAGATTCTCTCAGCCTCTGCACGAGGAGATCGCTCTCCACAAACGCCTTC
GCCACAAGAATATAGTGCGCTATTTGGGCTCAGCCAGCCAGGGCGGCTACCTCAAGATCTTCAT
GGAGGAAGTGCCTGGAGGCAGCCTGTCCTCCTTGCTTAGGTCAGTGTGGGGACCCCTAAAGGAC
AACGAGAGTACTATTAGCTTCTACACGCGTCAGATCCTGCAAGGACTTAGCTACCTGCATGAGA
ACCGCATTGTTCACCGAGACATCAAGGGGGACAATGTACTGATCAACACCTTCAGTGGGCTGCT
CAAGATTTCTGACTTTGGCACCTCCAAGCGGCTGGCAGGCATCACACCCTGCACGGAGACTTTC
ACAGGGACCCTGCAGTATATGGCCCCAGAAATCATTGACCAGGGCCCACGAGGATATGGAAAGG
CGGCTGACATCTGGTCTCTGGGCTGCACTGTGATTGAGATGGCCACAGGTTGGCCGCCCTTTCA
CGAACTAGGGAGCCCGCAGGCTGCCATGTTTCAGGTGGGCATGTACAAGGTACATCCACCAGTG
CCAAGTTCCCTGTCAGCTGAGGCCCAAGCCTTCCTCCTCCGAACTTTTGAGCCAGATCCCCGCC
TCCGAGCCAGTGCCCAAGAGCTGTTGGGAGACCCCTTCCTGCAACCAGGGAAGAGGAGCCGCAG
CCCTGGCTCTCCTCGGCACACTCCCCGGCCCTCAGGCACCCCTTCCAGTACTTCCAGTCCTTCA
GCTGACTCAGCCACACAGTCTCAGACATTCCCAAGGCCCCAGGCACCCTCTCAGCACCCACCCA
GCCCTCCGAAGCGCTGCCTTAGTTATGGGGACACCAGTCAGCTCCGTGTGCCCGAGGAATCCGC
TGCCGAGGAACCCGCGTCCCCAGAAGAGAGTTCAGGCCTGAGCCTGCTGCACCAGGAGAGCAAG
CGCCGAGCCATGCTGGCTGCAGTGCTGGAACAGGAGGTGCCCATACTAGCAGAGAATCTCCTGG
ATCAGGAACAGGATTCTCGACTCAGCAGGAATCATGTGGAACTTCTGCTTCGGTGCCTCGGGGC
ACAAATCCATACTCCTAACCGCCGGCAGCTGGCCCAGGAGCTGCGGGCCCTGCAAGCTCAACTG
CGGGCCCAGAGCCTGAGCCCTGCGCTTTTGAAGGGGCCGCTCTTCGCCTTTCCAGACGCGGTGA
AGCAGATCCTCCGCAGACGCCAGATCCGCCCACACTGGATGTTCGTGTTGGACTCGCTGCTCAG
CCGGGCAGTCCGGGCGGCGCTGGCCGTACTGGACGCGGAGGCAGAGAAGAAAGCGGTCTCACCG
AAGTCAGAGGAGTGGAGTCAAGGGGAGTCCCAGCAGAAACCGCTGGAGAGCCAGCCGCCGCTGC
AGAGTCAGCTCCCACCAGAGCAGGAACCTCCATCCCTGATGATACAGCTGGGTCTCTTGCGAGC
TGAGACTGACAGGCTTCGGGACATTCTGGCTGAGAAGGAACGTGAGTGCCAGGCCCTCGTGCAA
CAGGCCCTGCATCGGGTGCACGCAGAGACCAGGACGTATGCCCTGGCTTCAGAGACCCCGGCCA
CTCTCCCAAAGGACCAGAAACTGGTGCAGTGGCTACAGGACCTGAGTGTAGATCCAACCACTAT
CCAAACGCTCCTGAGCCATAGCTTTACCCTTCAAACCCTGCTCACCTGTGCCACTCAGGATGAC
CTCGTCTACACCAGAATCAGGTACATCTTGGGCCCTCCGGCGGTGAACCACGTAGCACCCGCTA
GCAATATGCGGGCATCCCCTGCCCTCTGGGCCTGCCTTGATTCCTCCCTGAAAACAACTGGGGA
ACAAGTTCTCCTGGGCATAGCGGTTCCTAACGAGAGAGCGGGGGCTGCCTTCTGGCTGAATTAC
ATTGATCCCTGATGTCCCCAGGGGAGGGATGGTATGCAGAATTTGGAGAGCCATCTTGGCACAG
CGAGCAGGAGCCACGTCGGTCACCCCTGGACCCCGGGATGCTGAGTGATGACATCAAGGGACAC
AGACATGGATGGATGAACAGAGGAGACACAAGCAGCTTTTGACGCACCCGTCCCAGAACCTAGG
AGCAAACTGCAGGGCCCAGGACGAACCCCAATGGGTGGAACTAACTAGGGAGGCACCCAAAAGA
CACTACATACGACCAAAGACTATTAAACAGAACACTTGCTACCATA

hide sequence

RefSeq Acc Id:

XM_006239022 ⟹ XP_006239084

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,724,927 - 150,736,112 (+)	NCBI
mRatBN7.2	5	145,441,024 - 145,452,213 (+)	NCBI
Rnor_6.0	5	151,437,518 - 151,448,329 (+)	NCBI
Rnor_5.0	5	155,100,704 - 155,113,502 (+)	NCBI

Sequence:

show sequence

GTTGATAAGTCCTAACTTTACTACATCCCACACGGGGCTAAAGGGGCGGAAATGGAAGCGCTGA
GGCAACCCTTCGGGACTGGATTATTGGAGAGAGGGATTGTGTTTGGAGACTAGGAGACTAGGAA
AGAAAATGGACAGGGTAGAGGTGGGTCTAGAAGAGAGACAGGGAGTCCAGGGGCGAGGTCGGAA
GGTGGCTATTCCTCTCTTTTCCACCTACCCGGATGCTCCACCCCATCCCTATTTGTTCATCCCA
GAGTCAGAGAGCCGTGTATCCTGGACATCTGCTAAATTGTAGCTTAAAAATGAAGGCTGATCCG
ATCAGACCACAGATAAAGTCATGGACTCATCCCCGATGACTCATACAGTCCCCTCCCTCGTGGA
CACTGCCACTTAAAGATGGCTGGTTATAGTAAGCTACACAAACACACATAAAAGCACAACATTG
TCTTCACACAGGACGGTGCAGATCACCCTCAAGGGCCGGTCTTCAAGGCTGGAGAGATGGCCTA
GAGGTTAAGAGCACTTGCTGCTCCCAGCATGCACATGGGGTGCTCATAACCACCTATAACTTTA
TCTCCAGAGGATCCCAATGCTGTCTTCTATCATACACTCACACCAACACACGCATTCATATAAA
TAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTTCTGTTTGCAAGGTTCCTATCT
CCTCATAGCCTGGAAGTGCCTAGCCAGAGCACCACCACTTATCTCCTTCCTGGGACTTCTAGGC
TCTCGGTGCGATGGGGGTCTCTGGGCATCTTCTGTAACACCACCATTCCGAGTATTGTGAAAAC
ATCATCGGGAGGGAAGCTCTCTAGAGCAGCACTGAACTTGGCATCAGGGGCAGGCAAGGCAAGC
ACCTCTAGGCTCCTTCACCTCTGAGCTGTGCTCGACGCTCAGGTCTACACTTCTGTGTCCACAG
ACGTAGTGGTGCTGGAGGTGAGCAACTCCCTGGCACAGCCTTCCTTGTTCTACCACCTCGGCGT
GCGTGAGAGCTTCAGCATGACCAACAATGTGCTCCTCTGTTCCCAGGCAGAGCTCCCTGACCTG
CAGGCCCTTCGTGAGGATGTTTTCCAGAAGAACTCGCGGCTACTTCCGGGAGACCATTCGTCAA
GATATCCGGAAGGCACGGGAGCGGTTCAGCGGGCAGCAGCTGAGGCAGGAGCTGGCTCGCCTGC
AGCGGAGGCTGGACAGCGTAGAGCTGTTGAGCCCCGACATCATCATGAATCTGCTTCTGTCATA
CCGCGACGTCCAGGACTACTCCGCCATCATTGAGCTGGTGGAGACGCTGCAGGCTTTGCCCACC
TGTGATGTGGCCGAACAGCACAATGTCTGCTTCCACTACACGTTTGCCCTCAACAGGAGGAACA
GGCCTGGGGACCGTGAGAAGGCCCTGGCTGTCCTTCTGCCATTGGTGAAGCATGAAGGCCCCGT
GGCTCCAGACCTGTACTGCATGTGTGGTCGTATCTACAAGGACATGTTCTTCAGCTCCAGCTTC
CAAAGTACTGGGCACCTGGAGCAGGCCTATCACTGGTACCGCAAGGCATTTGATGTGGAGCCCA
GCCTACACTCGGGCATCAATGCAGCTGTGCTGCTCATTGCAGCTGGGAAACACTTTGACGACTC
TGAGGAGCTCCAGCTGATAGGCATGAAGCTGGGCTGCCTGTTAGCCCGCAAAGGCTGTGTGGAG
AAGATGCAGTATTACTGGGACGTGGGGTTCTACCTGGGAGCCCAGATTCTTGCCAACGACCCCA
TCCAGGTGGTGCTGGCTGCAGAACAACTATACAAGCTCAATGCCCCCATATGGTACTTGGTGTC
AGTGATGGAGACCTTCTTACTGTACCAGCATTTCAGACCCACACCAGAGCCCTCGGGAGGACCC
GTGCTGCGAGCTCACTTTTGGCTCCATTTCTTGCTACAATCCTGCCAGCCTTTCAAGGCGACCC
CTCCTCAGGAGGACCAGTGCCTGGTACTGGTGCTGGAGATAAACAAGGTTCTGCTGCCTGCCAG
ACTTGAGATTCAGGGAGCCGACCCCATGAGCGCAGTGACCCTAAGCTTGCTGGAGCCAGAGACT
CAGGATGATCCTTCCAGCTGGACCTTCCCAGTCACCTCCATCTGTGGGATCAGCGCCTCCAAGC
TGGACCAGCGCTGCTGCTTCCTGTACGCACTTCCTCCGGCCCAGGACGTCCAGCTGTGCTTTCC
CAGCGTAGAGCGCTGCCGGTGGTTCTGTAGCCAAATTCAGGTCTTGGTGATGAATCCAGATTCC
TCGGCGCCCACTGAGGAGGCAGAAGGCACAAGGGAGGTGCTGGAGTTTGATTATGAATATTCGG
AGACGGGTGAGCGGCTGGTGCTGGGCAAAGGCACGTACGGGGTGGTGTATGCTGGCCGCGACAG
GCACACGAGGGTACGAATCGCCATCAAAGAGATCCCAGAGAGAGATAGCAGATTCTCTCAGCCT
CTGCACGAGGAGATCGCTCTCCACAAACGCCTTCGCCACAAGAATATAGTGCGCTATTTGGGCT
CAGCCAGCCAGGGCGGCTACCTCAAGATCTTCATGGAGGAAGTGCCTGGAGGCAGCCTGTCCTC
CTTGCTTAGGTCAGTGTGGGGACCCCTAAAGGACAACGAGAGTACTATTAGCTTCTACACGCGT
CAGATCCTGCAAGGACTTAGCTACCTGCATGAGAACCGCATTGTTCACCGAGACATCAAGGGGG
ACAATGTACTGATCAACACCTTCAGTGGGCTGCTCAAGATTTCTGACTTTGGCACCTCCAAGCG
GCTGGCAGGCATCACACCCTGCACGGAGACTTTCACAGGGACCCTGCAGTATATGGCCCCAGAA
ATCATTGACCAGGGCCCACGAGGATATGGAAAGGCGGCTGACATCTGGTCTCTGGGCTGCACTG
TGATTGAGATGGCCACAGGTTGGCCGCCCTTTCACGAACTAGGGAGCCCGCAGGCTGCCATGTT
TCAGGTGGGCATGTACAAGGTACATCCACCAGTGCCAAGTTCCCTGTCAGCTGAGGCCCAAGCC
TTCCTCCTCCGAACTTTTGAGCCAGATCCCCGCCTCCGAGCCAGTGCCCAAGAGCTGTTGGGAG
ACCCCTTCCTGCAACCAGGGAAGAGGAGCCGCAGCCCTGGCTCTCCTCGGCACACTCCCCGGCC
CTCAGGCACCCCTTCCAGTACTTCCAGTCCTTCAGCTGACTCAGCCACACAGTCTCAGACATTC
CCAAGGCCCCAGGCACCCTCTCAGCACCCACCCAGCCCTCCGAAGCGCTGCCTTAGTTATGGGG
ACACCAGTCAGCTCCGTGTGCCCGAGGAATCCGCTGCCGAGGAACCCGCGTCCCCAGAAGAGAG
TTCAGGCCTGAGCCTGCTGCACCAGGAGAGCAAGCGCCGAGCCATGCTGGCTGCAGTGCTGGAA
CAGGAGGTGCCCATACTAGCAGAGAATCTCCTGGATCAGGAACAGGATTCTCGACTCAGCAGGA
ATCATGTGGAACTTCTGCTTCGGTGCCTCGGGGCACAAATCCATACTCCTAACCGCCGGCAGCT
GGCCCAGGAGCTGCGGGCCCTGCAAGCTCAACTGCGGGCCCAGAGCCTGAGCCCTGCGCTTTTG
AAGGGGCCGCTCTTCGCCTTTCCAGACGCGGTGAAGCAGATCCTCCGCAGACGCCAGATCCGCC
CACACTGGATGTTCGTGTTGGACTCGCTGCTCAGCCGGGCAGTCCGGGCGGCGCTGGCCGTACT
GGACGCGGAGGCAGAGAAGAAAGCGGTCTCACCGAAGTCAGAGGAGTGGAGTCAAGGGGAGTCC
CAGCAGAAACCGCTGGAGAGCCAGCCGCCGCTGCAGAGTCAGCTCCCACCAGAGCAGGAACCTC
CATCCCTGATGATACAGCTGGGTCTCTTGCGAGCTGAGACTGACAGGCTTCGGGACATTCTGGC
TGAGAAGGAACGTGAGTGCCAGGCCCTCGTGCAACAGGCCCTGCATCGGGTGCACGCAGAGACC
AGGACGTATGCCCTGGCTTCAGAGACCCCGGCCACTCTCCCAAAGGACCAGAAACTGGTGCAGT
GGCTACAGGACCTGAGTGTAGATCCAACCACTATCCAAACGCTCCTGAGCCATAGCTTTACCCT
TCAAACCCTGCTCACCTGTGCCACTCAGGATGACCTCGTCTACACCAGAATCAGGTACATCTTG
GGCCCTCCGGCGGTGAACCACGTAGCACCCGCTAGCAATATGCGGGCATCCCCTGCCCTCTGGG
CCTGCCTTGATTCCTCCCTGAAAACAACTGGGGAACAAGTTCTCCTGGGCATAGCGGTTCCTAA
CGAGAGAGCGGGGGCTGCCTTCTGGCTGAATTACATTGATCCCTGATGTCCCCAGGGGAGGGAT
GGTATGCAGAATTTGGAGAGCCATCTTGGCACAGCGAGCAGGAGCCACGTCGGTCACCCCTGGA
CCCCGGGATGCTGAGTGATGACATCAAGGGACACAGACATGGATGGATGAACAGAGGAGACACA
AGCAGCTTTTGACGCACCCGTCCCAGAACCTAGGAGCAAACTGCAGGGCCCAGGACGAACCCCA
ATGGGTGGAACTAACTAGGGAGGCACCCAAAAGACACTACATACGACCAAAGACTATTAAACAG
AACACTTGCTACCATA

hide sequence

RefSeq Acc Id:

XM_008764137 ⟹ XP_008762359

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,724,047 - 150,736,112 (+)	NCBI
mRatBN7.2	5	145,440,154 - 145,452,213 (+)	NCBI
Rnor_6.0	5	151,435,692 - 151,448,329 (+)	NCBI

Sequence:

show sequence

CAGGGTCCTTTGGAAGAGCAGCAAATGCCAAATGCTCTTAACAGCTGTGCTGTCTCTCAAGCCC
CAAGCTCCACCATAATAAATGATTATGAAACATGGTCCTAACCTCAGATTCCCAAAGTCTGTTT
CAGGGTCCTCTAAGGTTTATACCAACTTAGTCACTATTTCATACTAGGACATTAAAGGTCCTTG
GTGATTCGAAGCTGGGATACTCTTGTAACCCAAAAAGCCGAGGCTTCTGGAGTTCCTTCAAGGA
ATAGATAGGAAGTTTTCAGTAGAAGTGCTTCTCAGTTCCATGGGCAACTTTTGGGTGGACGGAG
GATAAGTTCAGCAAGGCTTCCCAGTAAGTGACGCTATGAGGAAAGCAGCTTGTCAACGCTCAGA
CCTCTACCAGCAGGAACGTTTACATGTGATACCTATTACTACTCACAATGTTTTGACACCTCCC
TCCCTCCCCAACCTCCCTGCTCCGCGTCCATTCATTCACTAGATCCCTGCAGGGCGGGGTCGTC
CTGTTTCCTATCCCTGGCCTGGGCACACATCCTACGAGCGCCTGCAGTGAGTATTCAACAGTGT
TTGGCCCGAATAGGGGCACAGGCTGTTCCGGAAGTGGACAGTGTCAGAGGTTCTAGCCGGAGAG
GAGGGAGGGAGAGCCACTGGGGAGCTTCATTGCCCCAGGGCCGAGGGTGGAGCCTTTCCCAGTC
GGGAAAGGGCTGGGTCCAGCCTACATGTGAGGGCAGGACAGAGTGACTGCCAGCGCTCCCTTGA
GAAGTCAGGGTGTAGCACGCTGCCGGTTGAATTCCCAGGATCCTTCTGTGACCTGTGAGCCGAG
GATTACTGGGTACCCCAGATTCCCAGAACCCAGTCCTGGATTGCAGATCTCTAAGGACCGTGAA
AGATTAAGCAAAGATTTCTCTCTGGATTTAAGATTTCCGGAACAGGACGTCCAGCCCATCTCCG
GATCCCGGCTGGATCCACACCTTCAGCCTCGTGCCCTGTCCCGGGTCTCCCGCGCCCGGCGTCC
CGCGCTTGAGCGCCCCCGCATGGCGGGGCCGTGTCCCGGGGCCGGGGTTCTAGAACGGGCGGGC
AGCTGCTGGCAGGACCCTCTGGCGGAGGCGCTGAGCCGGGGCCGCTCGTCTCCTGCGGTCGCCG
GTCGGGGCTGCGCGCGGAGCCGGCCTCTCAGTGTGGTCTACGTGTTGACCCGCGAGCCTGGACC
CGGGGTGGAGCCCGGGTCGGGAACCGAGGCAGAGCCGCTGCCGCTGCGATGCCTGCGCGAGGCC
TGTGCTCAGCTCCAGAGCACGCGGCCACCCCCGCAACTGCGCAGCCTGCCCTTTGCGACGCTGG
CGCTAGGCGACACCGCTGCGCTAGACTCCTTCTACAACGCGGACGTAGTGGTGCTGGAGGTGAG
CAACTCCCTGGCACAGCCTTCCTTGTTCTACCACCTCGGCGTGCGTGAGAGCTTCAGCATGACC
AACAATGTGCTCCTCTGTTCCCAGGCAGAGCTCCCTGACCTGCAGGCCCTTCGTGATTGCGTTG
GCAGCTACACACTGATTCCTTATGTTGTGACAGCCACTGGCCGGGTCTTATGTGGCGATGCAGG
CCTCCTGAGGGGCATAGCCGATGGGCTAGTACAGGCTGGGGTGGGCACTGAGGCCCTCCTCACG
CCCCTGGTGGGCCGGCTTGTCCGTCTCTTGGAGGCCACACCCACAGACTCTTGCGGCTACTTCC
GGGAGACCATTCGTCAAGATATCCGGAAGGCACGGGAGCGGTTCAGCGGGCAGCAGCTGAGGCA
GGAGCTGGCTCGCCTGCAGCGGAGGCTGGACAGCGTAGAGCTGTTGAGCCCCGACATCATCATG
AATCTGCTTCTGTCATACCGCGACGTCCAGGACTACTCCGCCATCATTGAGCTGGTGGAGACGC
TGCAGGCTTTGCCCACCTGTGATGTGGCCGAACAGCACAATGTCTGCTTCCACTACACGTTTGC
CCTCAACAGGAGGAACAGGCCTGGGGACCGTGAGAAGGCCCTGGCTGTCCTTCTGCCATTGGTG
AAGCATGAAGGCCCCGTGGCTCCAGACCTGTACTGCATGTGTGGTCGTATCTACAAGGACATGT
TCTTCAGCTCCAGCTTCCAAAGTACTGGGCACCTGGAGCAGGCCTATCACTGGTACCGCAAGGC
ATTTGATGTGGAGCCCAGCCTACACTCGGGCATCAATGCAGCTGTGCTGCTCATTGCAGCTGGG
AAACACTTTGACGACTCTGAGGAGCTCCAGCTGATAGGCATGAAGCTGGGCTGCCTGTTAGCCC
GCAAAGGCTGTGTGGAGAAGATGCAGTATTACTGGGACGTGGGGTTCTACCTGGGAGCCCAGAT
TCTTGCCAACGACCCCATCCAGGTGGTGCTGGCTGCAGAACAACTATACAAGCTCAATGCCCCC
ATATGGTACTTGGTGTCAGTGATGGAGACCTTCTTACTGTACCAGCATTTCAGACCCACACCAG
AGCCCTCGGGAGGACCCGTGCTGCGAGCTCACTTTTGGCTCCATTTCTTGCTACAATCCTGCCA
GCCTTTCAAGGCGACCCCTCCTCAGGAGGACCAGTGCCTGGTACTGGTGCTGGAGATAAACAAG
GTTCTGCTGCCTGCCAGACTTGAGATTCAGGGAGCCGACCCCATGAGCGCAGTGACCCTAAGCT
TGCTGGAGCCAGAGACTCAGGATGATCCTTCCAGCTGGACCTTCCCAGTCACCTCCATCTGTGG
GATCAGCGCCTCCAAGCTGGACCAGCGCTGCTGCTTCCTGTACGCACTTCCTCCGGCCCAGGAC
GTCCAGCTGTGCTTTCCCAGCGTAGAGCGCTGCCGGTGGTTCTGTAGCCAAATTCAGGTCTTGG
TGATGAATCCAGATTCCTCGGCGCCCACTGAGGAGGCAGAAGGCACAAGGGAGGTGCTGGAGTT
TGATTATGAATATTCGGAGACGGGTGAGCGGCTGGTGCTGGGCAAAGGCACGTACGGGGTGGTG
TATGCTGGCCGCGACAGGCACACGAGGGTACGAATCGCCATCAAAGAGATCCCAGAGAGAGATA
GCAGATTCTCTCAGCCTCTGCACGAGGAGATCGCTCTCCACAAACGCCTTCGCCACAAGAATAT
AGTGCGCTATTTGGGCTCAGCCAGCCAGGGCGGCTACCTCAAGATCTTCATGGAGGAAGTGCCT
GGAGGCAGCCTGTCCTCCTTGCTTAGGTCAGTGTGGGGACCCCTAAAGGACAACGAGAGTACTA
TTAGCTTCTACACGCGTCAGATCCTGCAAGGACTTAGCTACCTGCATGAGAACCGCATTGTTCA
CCGAGACATCAAGGGGGACAATGTACTGATCAACACCTTCAGTGGGCTGCTCAAGATTTCTGAC
TTTGGCACCTCCAAGCGGCTGGCAGGCATCACACCCTGCACGGAGACTTTCACAGGGACCCTGC
AGTATATGGCCCCAGAAATCATTGACCAGGGCCCACGAGGATATGGAAAGGCGGCTGACATCTG
GTCTCTGGGCTGCACTGTGATTGAGATGGCCACAGGTTGGCCGCCCTTTCACGAACTAGGGAGC
CCGCAGGCTGCCATGTTTCAGGTGGGCATGTACAAGGTACATCCACCAGTGCCAAGTTCCCTGT
CAGCTGAGGCCCAAGCCTTCCTCCTCCGAACTTTTGAGCCAGATCCCCGCCTCCGAGCCAGTGC
CCAAGAGCTGTTGGGAGACCCCTTCCTGCAACCAGGGAAGAGGAGCCGCAGCCCTGGCTCTCCT
CGGCACACTCCCCGGCCCTCAGGCACCCCTTCCAGTACTTCCAGTCCTTCAGCTGACTCAGCCA
CACAGTCTCAGACATTCCCAAGGCCCCAGGCACCCTCTCAGCACCCACCCAGCCCTCCGAAGCG
CTGCCTTAGTTATGGGGACACCAGTCAGCTCCGTGTGCCCGAGGAATCCGCTGCCGAGGAACCC
GCGTCCCCAGAAGAGAGTTCAGGCCTGAGCCTGCTGCACCAGGAGAGCAAGCGCCGAGCCATGC
TGGCTGCAGTGCTGGAACAGGAGGTGCCCATACTAGCAGAGAATCTCCTGGATCAGGAACAGGA
TTCTCGACTCAGCAGGAATCATGTGGAACTTCTGCTTCGGTGCCTCGGGGCACAAATCCATACT
CCTAACCGCCGGCAGCTGGCCCAGGAGCTGCGGGCCCTGCAAGCTCAACTGCGGGCCCAGAGCC
TGAGCCCTGCGCTTTTGAAGGGGCCGCTCTTCGCCTTTCCAGACGCGGTGAAGCAGATCCTCCG
CAGACGCCAGATCCGCCCACACTGGATGTTCGTGTTGGACTCGCTGCTCAGCCGGGCAGTCCGG
GCGGCGCTGGCCGTACTGGACGCGGAGGCAGAGAAGAAAGCGGTCTCACCGAAGTCAGAGGAGT
GGAGTCAAGGGGAGTCCCAGCAGAAACCGCTGGAGAGCCAGCCGCCGCTGCAGAGTCAGCTCCC
ACCAGAGCAGGAACCTCCATCCCTGATGATACAGCTGGGTCTCTTGCGAGCTGAGACTGACAGG
CTTCGGGACATTCTGGCTGAGAAGGAACGTGAGTGCCAGGCCCTCGTGCAACAGGCCCTGCATC
GGGTGCACGCAGAGACCAGGACGTATGCCCTGGCTTCAGAGACCCCGGCCACTCTCCCAAAGGA
CCAGAAACTGGTGCAGTGGCTACAGGACCTGAGTGTAGATCCAACCACTATCCAAACGCTCCTG
AGCCATAGCTTTACCCTTCAAACCCTGCTCACCTGTGCCACTCAGGATGACCTCGTCTACACCA
GAATCAGGGGAGGGATGGTATGCAGAATTTGGAGAGCCATCTTGGCACAGCGAGCAGGAGCCAC
GTCGGTCACCCCTGGACCCCGGGATGCTGAGTGATGACATCAAGGGACACAGACATGGATGGAT
GAACAGAGGAGACACAAGCAGCTTTTGACGCACCCGTCCCAGAACCTAGGAGCAAACTGCAGGG
CCCAGGACGAACCCCAATGGGTGGAACTAACTAGGGAGGCACCCAAAAGACACTACATACGACC
AAAGACTATTAAACAGAACACTTGCTACCATA

hide sequence

RefSeq Acc Id:

XM_039109779 ⟹ XP_038965707

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,724,717 - 150,736,112 (+)	NCBI
mRatBN7.2	5	145,440,821 - 145,452,213 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101379	(Get FASTA)	NCBI Sequence Viewer
	XP_006239081	(Get FASTA)	NCBI Sequence Viewer
	XP_006239082	(Get FASTA)	NCBI Sequence Viewer
	XP_006239084	(Get FASTA)	NCBI Sequence Viewer
	XP_008762359	(Get FASTA)	NCBI Sequence Viewer
	XP_038965707	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80662	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012463
	ENSRNOP00000012463.5
	ENSRNOP00000080621
	ENSRNOP00000080621.1

RefSeq Acc Id:

NP_001101379 ⟸ NM_001107909

- UniProtKB:

D3ZFL3 (UniProtKB/TrEMBL), A6ISW1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGPCPGAGVLERAGSCWQDPLAEALSRGRSSPAVAGRGCARSRPLSVVYVLTREPGPGVEPGS
GTEAEPLPLRCLREACAQLQSTRPPPQLRSLPFATLALGDTAALDSFYNADVVVLEVSNSLAQP
SLFYHLGVRESFSMTNNVLLCSQAELPDLQALREDVFQKNSDCVGSYTLIPYVVTATGRVLCGD
AGLLRGIADGLVQAGVGTEALLTPLVGRLVRLLEATPTDSCGYFRETIRQDIRKARERFSGQQL
RQELARLQRRLDSVELLSPDIIMNLLLSYRDVQDYSAIIELVETLQALPTCDVAEQHNVCFHYT
FALNRRNRPGDREKALAVLLPLVKHEGPVAPDLYCMCGRIYKDMFFSSSFQSTGHLEQAYHWYR
KAFDVEPSLHSGINAAVLLIAAGKHFDDSEELQLIGMKLGCLLARKGCVEKMQYYWDVGFYLGA
QILANDPIQVVLAAEQLYKLNAPIWYLVSVMETFLLYQHFRPTPEPSGGPVLRAHFWLHFLLQS
CQPFKATPPQEDQCLVLVLEINKVLLPARLEIQGADPMSAVTLSLLEPETQDDPSSWTFPVTSI
CGISASKLDQRCCFLYALPPAQDVQLCFPSVERCRWFCSQIQVLVMNPDSSAPTEEAEGTREVL
EFDYEYSETGERLVLGKGTYGVVYAGRDRHTRVRIAIKEIPERDSRFSQPLHEEIALHKRLRHK
NIVRYLGSASQGGYLKIFMEEVPGGSLSSLLRSVWGPLKDNESTISFYTRQILQGLSYLHENRI
VHRDIKGDNVLINTFSGLLKISDFGTSKRLAGITPCTETFTGTLQYMAPEIIDQGPRGYGKAAD
IWSLGCTVIEMATGWPPFHELGSPQAAMFQVGMYKVHPPVPSSLSAEAQAFLLRTFEPDPRLRA
SAQELLGDPFLQPGKRSRSPGSPRHTPRPSGTPSSTSSPSADSATQSQTFPRPQAPSQHPPSPP
KRCLSYGDTSQLRVPEESAAEEPASPEESSGLSLLHQESKRRAMLAAVLEQEVPILAENLLDQE
QDSRLSRNHVELLLRCLGAQIHTPNRRQLAQELRALQAQLRAQSLSPALLKGPLFAFPDAVKQI
LRRRQIRPHWMFVLDSLLSRAVRAALAVLDAEAEKKAVSPKSEEWSQGESQQKPLESQPPLQSQ
LPPEQEPPSLMIQLGLLRAETDRLRDILAEKERECQALVQQALHRVHAETRTYALASETPATLP
KDQKLVQWLQDLSVDPTTIQTLLSHSFTLQTLLTCATQDDLVYTRIRGGMVCRIWRAILAQRAG
ATSVTPGPRDAE

hide sequence

RefSeq Acc Id:

XP_006239081 ⟸ XM_006239019

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAGPCPGAGVLERAGSCWQDPLAEALSRGRSSPAVAGRGCARSRPLSVVYVLTREPGPGVEPGS
GTEAEPLPLRCLREACAQLQSTRPPPQLRSLPFATLALGDTAALDSFYNADVVVLEVSNSLAQP
SLFYHLGVRESFSMTNNVLLCSQAELPDLQALREDVFQKNSDCVGSYTLIPYVVTATGRVLCGD
AGLLRGIADGLVQAGVGTEALLTPLVGRLVRLLEATPTDSCGYFRETIRQDIRKARERFSGQQL
RQELARLQRRLDSVELLSPDIIMNLLLSYRDVQDYSAIIELVETLQALPTCDVAEQHNVCFHYT
FALNRRNRPGDREKALAVLLPLVKHEGPVAPDLYCMCGRIYKDMFFSSSFQSTGHLEQAYHWYR
KAFDVEPSLHSGINAAVLLIAAGKHFDDSEELQLIGMKLGCLLARKGCVEKMQYYWDVGFYLGA
QILANDPIQVVLAAEQLYKLNAPIWYLVSVMETFLLYQHFRPTPEPSGGPVLRAHFWLHFLLQS
CQPFKATPPQEDQCLVLVLEINKVLLPARLEIQGADPMSAVTLSLLEPETQDDPSSWTFPVTSI
CGISASKLDQRCCFLYALPPAQDVQLCFPSVERCRWFCSQIQVLVMNPDSSAPTEEAEGTREVL
EFDYEYSETGERLVLGKGTYGVVYAGRDRHTRVRIAIKEIPERDSRFSQPLHEEIALHKRLRHK
NIVRYLGSASQGGYLKIFMEEVPGGSLSSLLRSVWGPLKDNESTISFYTRQILQGLSYLHENRI
VHRDIKGDNVLINTFSGLLKISDFGTSKRLAGITPCTETFTGTLQYMAPEIIDQGPRGYGKAAD
IWSLGCTVIEMATGWPPFHELGSPQAAMFQVGMYKVHPPVPSSLSAEAQAFLLRTFEPDPRLRA
SAQELLGDPFLQPGKRSRSPGSPRHTPRPSGTPSSTSSPSADSATQSQTFPRPQAPSQHPPSPP
KRCLSYGDTSQLRVPEESAAEEPASPEESSGLSLLHQESKRRAMLAAVLEQEVPILAENLLDQE
QDSRLSRNHVELLLRCLGAQIHTPNRRQLAQELRALQAQLRAQSLSPALLKGPLFAFPDAVKQI
LRRRQIRPHWMFVLDSLLSRAVRAALAVLDAEAEKKAVSPKSEEWSQGESQQKPLESQPPLQSQ
LPPEQEPPSLMIQLGLLRAETDRLRDILAEKERECQALVQQALHRVHAETRTYALASETPATLP
KDQKLVQWLQDLSVDPTTIQTLLSHSFTLQTLLTCATQDDLVYTRIRYILGPPAVNHVAPASNM
RASPALWACLDSSLKTTGEQVLLGIAVPNERAGAAFWLNYIDP

hide sequence

RefSeq Acc Id:

XP_006239082 ⟸ XM_006239020

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAGPCPGAGVLERAGSCWQDPLAEALSRGRSSPAVAGRGCARSRPLSVVYVLTREPGPGVEPGS
GTEAEPLPLRCLREACAQLQSTRPPPQLRSLPFATLALGDTAALDSFYNADVVVLEVSNSLAQP
SLFYHLGVRESFSMTNNVLLCSQAELPDLQALRDCVGSYTLIPYVVTATGRVLCGDAGLLRGIA
DGLVQAGVGTEALLTPLVGRLVRLLEATPTDSCGYFRETIRQDIRKARERFSGQQLRQELARLQ
RRLDSVELLSPDIIMNLLLSYRDVQDYSAIIELVETLQALPTCDVAEQHNVCFHYTFALNRRNR
PGDREKALAVLLPLVKHEGPVAPDLYCMCGRIYKDMFFSSSFQSTGHLEQAYHWYRKAFDVEPS
LHSGINAAVLLIAAGKHFDDSEELQLIGMKLGCLLARKGCVEKMQYYWDVGFYLGAQILANDPI
QVVLAAEQLYKLNAPIWYLVSVMETFLLYQHFRPTPEPSGGPVLRAHFWLHFLLQSCQPFKATP
PQEDQCLVLVLEINKVLLPARLEIQGADPMSAVTLSLLEPETQDDPSSWTFPVTSICGISASKL
DQRCCFLYALPPAQDVQLCFPSVERCRWFCSQIQVLVMNPDSSAPTEEAEGTREVLEFDYEYSE
TGERLVLGKGTYGVVYAGRDRHTRVRIAIKEIPERDSRFSQPLHEEIALHKRLRHKNIVRYLGS
ASQGGYLKIFMEEVPGGSLSSLLRSVWGPLKDNESTISFYTRQILQGLSYLHENRIVHRDIKGD
NVLINTFSGLLKISDFGTSKRLAGITPCTETFTGTLQYMAPEIIDQGPRGYGKAADIWSLGCTV
IEMATGWPPFHELGSPQAAMFQVGMYKVHPPVPSSLSAEAQAFLLRTFEPDPRLRASAQELLGD
PFLQPGKRSRSPGSPRHTPRPSGTPSSTSSPSADSATQSQTFPRPQAPSQHPPSPPKRCLSYGD
TSQLRVPEESAAEEPASPEESSGLSLLHQESKRRAMLAAVLEQEVPILAENLLDQEQDSRLSRN
HVELLLRCLGAQIHTPNRRQLAQELRALQAQLRAQSLSPALLKGPLFAFPDAVKQILRRRQIRP
HWMFVLDSLLSRAVRAALAVLDAEAEKKAVSPKSEEWSQGESQQKPLESQPPLQSQLPPEQEPP
SLMIQLGLLRAETDRLRDILAEKERECQALVQQALHRVHAETRTYALASETPATLPKDQKLVQW
LQDLSVDPTTIQTLLSHSFTLQTLLTCATQDDLVYTRIRYILGPPAVNHVAPASNMRASPALWA
CLDSSLKTTGEQVLLGIAVPNERAGAAFWLNYIDP

hide sequence

RefSeq Acc Id:

XP_006239084 ⟸ XM_006239022

- Peptide Label:

isoform X4

- Sequence:

show sequence

MCSSVPRQSSLTCRPFVRMFSRRTRGYFRETIRQDIRKARERFSGQQLRQELARLQRRLDSVEL
LSPDIIMNLLLSYRDVQDYSAIIELVETLQALPTCDVAEQHNVCFHYTFALNRRNRPGDREKAL
AVLLPLVKHEGPVAPDLYCMCGRIYKDMFFSSSFQSTGHLEQAYHWYRKAFDVEPSLHSGINAA
VLLIAAGKHFDDSEELQLIGMKLGCLLARKGCVEKMQYYWDVGFYLGAQILANDPIQVVLAAEQ
LYKLNAPIWYLVSVMETFLLYQHFRPTPEPSGGPVLRAHFWLHFLLQSCQPFKATPPQEDQCLV
LVLEINKVLLPARLEIQGADPMSAVTLSLLEPETQDDPSSWTFPVTSICGISASKLDQRCCFLY
ALPPAQDVQLCFPSVERCRWFCSQIQVLVMNPDSSAPTEEAEGTREVLEFDYEYSETGERLVLG
KGTYGVVYAGRDRHTRVRIAIKEIPERDSRFSQPLHEEIALHKRLRHKNIVRYLGSASQGGYLK
IFMEEVPGGSLSSLLRSVWGPLKDNESTISFYTRQILQGLSYLHENRIVHRDIKGDNVLINTFS
GLLKISDFGTSKRLAGITPCTETFTGTLQYMAPEIIDQGPRGYGKAADIWSLGCTVIEMATGWP
PFHELGSPQAAMFQVGMYKVHPPVPSSLSAEAQAFLLRTFEPDPRLRASAQELLGDPFLQPGKR
SRSPGSPRHTPRPSGTPSSTSSPSADSATQSQTFPRPQAPSQHPPSPPKRCLSYGDTSQLRVPE
ESAAEEPASPEESSGLSLLHQESKRRAMLAAVLEQEVPILAENLLDQEQDSRLSRNHVELLLRC
LGAQIHTPNRRQLAQELRALQAQLRAQSLSPALLKGPLFAFPDAVKQILRRRQIRPHWMFVLDS
LLSRAVRAALAVLDAEAEKKAVSPKSEEWSQGESQQKPLESQPPLQSQLPPEQEPPSLMIQLGL
LRAETDRLRDILAEKERECQALVQQALHRVHAETRTYALASETPATLPKDQKLVQWLQDLSVDP
TTIQTLLSHSFTLQTLLTCATQDDLVYTRIRYILGPPAVNHVAPASNMRASPALWACLDSSLKT
TGEQVLLGIAVPNERAGAAFWLNYIDP

hide sequence

RefSeq Acc Id:	XP_008762359 ⟸ XM_008764137
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZR53 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGPCPGAGVLERAGSCWQDPLAEALSRGRSSPAVAGRGCARSRPLSVVYVLTREPGPGVEPGS GTEAEPLPLRCLREACAQLQSTRPPPQLRSLPFATLALGDTAALDSFYNADVVVLEVSNSLAQP SLFYHLGVRESFSMTNNVLLCSQAELPDLQALRDCVGSYTLIPYVVTATGRVLCGDAGLLRGIA DGLVQAGVGTEALLTPLVGRLVRLLEATPTDSCGYFRETIRQDIRKARERFSGQQLRQELARLQ RRLDSVELLSPDIIMNLLLSYRDVQDYSAIIELVETLQALPTCDVAEQHNVCFHYTFALNRRNR PGDREKALAVLLPLVKHEGPVAPDLYCMCGRIYKDMFFSSSFQSTGHLEQAYHWYRKAFDVEPS LHSGINAAVLLIAAGKHFDDSEELQLIGMKLGCLLARKGCVEKMQYYWDVGFYLGAQILANDPI QVVLAAEQLYKLNAPIWYLVSVMETFLLYQHFRPTPEPSGGPVLRAHFWLHFLLQSCQPFKATP PQEDQCLVLVLEINKVLLPARLEIQGADPMSAVTLSLLEPETQDDPSSWTFPVTSICGISASKL DQRCCFLYALPPAQDVQLCFPSVERCRWFCSQIQVLVMNPDSSAPTEEAEGTREVLEFDYEYSE TGERLVLGKGTYGVVYAGRDRHTRVRIAIKEIPERDSRFSQPLHEEIALHKRLRHKNIVRYLGS ASQGGYLKIFMEEVPGGSLSSLLRSVWGPLKDNESTISFYTRQILQGLSYLHENRIVHRDIKGD NVLINTFSGLLKISDFGTSKRLAGITPCTETFTGTLQYMAPEIIDQGPRGYGKAADIWSLGCTV IEMATGWPPFHELGSPQAAMFQVGMYKVHPPVPSSLSAEAQAFLLRTFEPDPRLRASAQELLGD PFLQPGKRSRSPGSPRHTPRPSGTPSSTSSPSADSATQSQTFPRPQAPSQHPPSPPKRCLSYGD TSQLRVPEESAAEEPASPEESSGLSLLHQESKRRAMLAAVLEQEVPILAENLLDQEQDSRLSRN HVELLLRCLGAQIHTPNRRQLAQELRALQAQLRAQSLSPALLKGPLFAFPDAVKQILRRRQIRP HWMFVLDSLLSRAVRAALAVLDAEAEKKAVSPKSEEWSQGESQQKPLESQPPLQSQLPPEQEPP SLMIQLGLLRAETDRLRDILAEKERECQALVQQALHRVHAETRTYALASETPATLPKDQKLVQW LQDLSVDPTTIQTLLSHSFTLQTLLTCATQDDLVYTRIRGGMVCRIWRAILAQRAGATSVTPGP RDAE hide sequence

Ensembl Acc Id:

ENSRNOP00000012463 ⟸ ENSRNOT00000012463

RefSeq Acc Id:	XP_038965707 ⟸ XM_039109779
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000080621 ⟸ ENSRNOT00000093926

Protein Domains

Protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZFL3-F1-model_v2	AlphaFold	D3ZFL3	1-1292	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694109

Promoter ID:

EPDNEW_R4633

Type:

multiple initiation site

Name:

Map3k6_1

Description:

mitogen-activated protein kinase kinase kinase 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	151,436,435 - 151,436,495	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304625	AgrOrtholog
BioCyc Gene	G2FUF-39639	BioCyc
Ensembl Genes	ENSRNOG00000008936	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012463	ENTREZGENE
	ENSRNOT00000012463.7	UniProtKB/TrEMBL
	ENSRNOT00000093926	ENTREZGENE
	ENSRNOT00000093926.2	UniProtKB/TrEMBL
Gene3D-CATH	Phosphorylase Kinase, domain 1	UniProtKB/TrEMBL
	Transferase(Phosphotransferase) domain 1	UniProtKB/TrEMBL
InterPro	DRHyd-ASK	UniProtKB/TrEMBL
	DUF4071	UniProtKB/TrEMBL
	HisK-N-like	UniProtKB/TrEMBL
	Kinase-like_dom	UniProtKB/TrEMBL
	MAP3K_PH	UniProtKB/TrEMBL
	Prot_kinase_cat_dom	UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/TrEMBL
	SAM/pointed	UniProtKB/TrEMBL
	Ser/Thr_prot_kinase_AS	UniProtKB/TrEMBL
KEGG Report	rno:313022	UniProtKB/TrEMBL
NCBI Gene	313022	ENTREZGENE
PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 6	UniProtKB/TrEMBL
	SERINE/THREONINE PROTEIN KINASE	UniProtKB/TrEMBL
Pfam	ASK_PH	UniProtKB/TrEMBL
	DRHyd-ASK	UniProtKB/TrEMBL
	DUF4071	UniProtKB/TrEMBL
	HisK-N-like	UniProtKB/TrEMBL
	Pkinase	UniProtKB/TrEMBL
PhenoGen	Map3k6	PhenoGen
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008936	RatGTEx
SMART	S_TKc	UniProtKB/TrEMBL
Superfamily-SCOP	Kinase_like	UniProtKB/TrEMBL
	SAM_homology	UniProtKB/TrEMBL
UniProt	A0A8I5ZR53	ENTREZGENE, UniProtKB/TrEMBL
	A6ISW1	ENTREZGENE, UniProtKB/TrEMBL
	D3ZFL3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Map3k6	mitogen-activated protein kinase kinase kinase 6	Map3k6_predicted	mitogen-activated protein kinase kinase kinase 6 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Map3k6_predicted	mitogen-activated protein kinase kinase kinase 6 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

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Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)