Ifi35 (interferon-induced protein 35) - Rat Genome Database

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Gene: Ifi35 (interferon-induced protein 35) Rattus norvegicus
Analyze
Symbol: Ifi35
Name: interferon-induced protein 35
RGD ID: 1304553
Description: Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including macrophage activation involved in immune response; positive regulation of defense response; and regulation of non-canonical NF-kappaB signal transduction. Predicted to be located in several cellular components, including cytosol; extracellular space; and nuclear lumen. Predicted to be active in nucleus. Orthologous to human IFI35 (interferon induced protein 35); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC287719; MGC108976
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,881,270 - 86,889,523 (+)NCBIGRCr8
mRatBN7.21086,381,023 - 86,389,279 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1086,381,010 - 86,389,952 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1091,418,433 - 91,426,447 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,893,398 - 90,901,717 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01086,286,702 - 86,295,023 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01089,358,376 - 89,366,628 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1089,358,376 - 89,366,626 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01089,156,392 - 89,164,644 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41090,475,323 - 90,483,575 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11090,489,692 - 90,497,943 (+)NCBI
Celera1085,098,510 - 85,106,762 (+)NCBICelera
Cytogenetic Map10q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ifi35RatExperimental Liver Cirrhosis  ISOIFI35 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Ifi35RatHuman Influenza  ISOIFI35 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23326326
Ifi35RatSpontaneous Abortions  ISOIFI35 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18539642

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ifi35Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of IFI35 mRNA]CTDPMID:31150632
Ifi35Rat1,2-dimethylhydrazine increases expressionISOIfi35 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of IFI35 mRNACTDPMID:22206623
Ifi35Rat1,2-dimethylhydrazine multiple interactionsISOIfi35 (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of IFI35 mRNA]CTDPMID:22206623
Ifi35Rat17beta-estradiol increases expressionISOIFI35 (Homo sapiens)6480464Estradiol results in increased expression of IFI35 mRNACTDPMID:21185374
Ifi35Rat17beta-estradiol decreases expressionISOIfi35 (Mus musculus)6480464Estradiol results in decreased expression of IFI35 mRNACTDPMID:39298647
Ifi35Rat17beta-estradiol multiple interactionsISOIFI35 (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of IFI35 mRNACTDPMID:30165855
Ifi35Rat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOIfi35 (Mus musculus)64804642 more ...CTDPMID:30294300
Ifi35Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of IFI35 mRNACTDPMID:21215274 and PMID:32109520
Ifi35Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOIfi35 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of IFI35 mRNACTDPMID:21570461
Ifi35Rat4,4'-sulfonyldiphenol increases expressionISOIfi35 (Mus musculus)6480464bisphenol S results in increased expression of IFI35 mRNACTDPMID:30951980 and PMID:39298647
Ifi35Rat5-fluorouracil increases expressionISOIFI35 (Homo sapiens)6480464Fluorouracil results in increased expression of IFI35 mRNACTDPMID:16101138
Ifi35Rat6alpha-methylprednisolone decreases expressionISOIFI35 (Homo sapiens)6480464Methylprednisolone results in decreased expression of IFI35 mRNACTDPMID:19192274
Ifi35Ratactinomycin D multiple interactionsISOIFI35 (Homo sapiens)6480464[Dactinomycin co-treated with nutlin 3] results in increased expression of IFI35 mRNACTDPMID:38460933
Ifi35Ratall-trans-retinoic acid increases expressionISOIFI35 (Homo sapiens)6480464Tretinoin results in increased expression of IFI35 mRNACTDPMID:15498508 and PMID:33167477
Ifi35Rataluminium atom decreases expressionISOIfi35 (Mus musculus)6480464Aluminum results in decreased expression of IFI35 mRNACTDPMID:37544489
Ifi35Rataluminium(0) decreases expressionISOIfi35 (Mus musculus)6480464Aluminum results in decreased expression of IFI35 mRNACTDPMID:37544489
Ifi35Rataristolochic acid A decreases expressionISOIFI35 (Homo sapiens)6480464aristolochic acid I results in decreased expression of IFI35 mRNACTDPMID:33212167
Ifi35Ratazathioprine decreases expressionISOIFI35 (Homo sapiens)6480464Azathioprine results in decreased expression of IFI35 mRNACTDPMID:19192274
Ifi35Ratbenzo[a]pyrene increases expressionISOIfi35 (Mus musculus)6480464Benzo(a)pyrene results in increased expression of IFI35 mRNACTDPMID:23735875
Ifi35Ratbisphenol A increases expressionISOIFI35 (Homo sapiens)6480464bisphenol A results in increased expression of IFI35 mRNACTDPMID:29275510

1 to 20 of 93 rows

Biological Process
1 to 20 of 20 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ifi35Ratimmune system process involved_inIEAUniProtKB-KW:KW-03911600115GO_REF:0000043UniProtGO_REF:0000043
Ifi35Ratinnate immune response involved_inIEAUniProtKB-KW:KW-03991600115GO_REF:0000043UniProtGO_REF:0000043
Ifi35Ratmacrophage activation involved in immune response involved_inISOIFI35 (Homo sapiens)1624291 PMID:29038465RGDPMID:29038465
Ifi35Ratmacrophage activation involved in immune response involved_inIEAUniProtKB:P80217 and ensembl:ENSP000003945791600115GO_REF:0000107EnsemblGO_REF:0000107
Ifi35Ratnegative regulation of cell population proliferation involved_inISOIFI35 (Homo sapiens)1624291 PMID:29350881RGDPMID:29350881
Ifi35Ratnegative regulation of cell population proliferation involved_inIEAUniProtKB:P80217 and ensembl:ENSP000003945791600115GO_REF:0000107EnsemblGO_REF:0000107
Ifi35Ratnegative regulation of non-canonical NF-kappaB signal transduction involved_inISOIFI35 (Homo sapiens)1624291 PMID:29350881RGDPMID:29350881
Ifi35Ratnegative regulation of non-canonical NF-kappaB signal transduction involved_inIEAUniProtKB:P80217 and ensembl:ENSP000003945791600115GO_REF:0000107EnsemblGO_REF:0000107
Ifi35Ratpositive regulation of inflammatory response involved_inISOIFI35 (Homo sapiens)1624291 PMID:29038465RGDPMID:29038465
Ifi35Ratpositive regulation of inflammatory response involved_inISOIfi35 (Mus musculus)1624291 PMID:29038465RGDPMID:29038465
Ifi35Ratpositive regulation of inflammatory response involved_inIEAUniProtKB:P80217 and ensembl:ENSP000003945791600115GO_REF:0000107EnsemblGO_REF:0000107
Ifi35Ratpositive regulation of inflammatory response involved_inIEAUniProtKB:Q9D8C4 and ensembl:ENSMUSP000000105021600115GO_REF:0000107EnsemblGO_REF:0000107
Ifi35Ratpositive regulation of innate immune response involved_inISOIFI35 (Homo sapiens)1624291 PMID:29038465RGDPMID:29038465
Ifi35Ratpositive regulation of innate immune response involved_inISOIfi35 (Mus musculus)1624291 PMID:29038465RGDPMID:29038465
Ifi35Ratpositive regulation of innate immune response involved_inIEAUniProtKB:Q9D8C4 and ensembl:ENSMUSP000000105021600115GO_REF:0000107EnsemblGO_REF:0000107
Ifi35Ratpositive regulation of innate immune response involved_inIEAUniProtKB:P80217 and ensembl:ENSP000003945791600115GO_REF:0000107EnsemblGO_REF:0000107
Ifi35Ratpositive regulation of non-canonical NF-kappaB signal transduction involved_inISOIfi35 (Mus musculus)1624291 PMID:29038465RGDPMID:29038465
Ifi35Ratpositive regulation of non-canonical NF-kappaB signal transduction involved_inIEAUniProtKB:Q9D8C4 and ensembl:ENSMUSP000000105021600115GO_REF:0000107EnsemblGO_REF:0000107
Ifi35Ratpositive regulation of toll-like receptor 4 signaling pathway involved_inISOIFI35 (Homo sapiens)1624291 PMID:29038465RGDPMID:29038465
Ifi35Ratpositive regulation of toll-like receptor 4 signaling pathway involved_inIEAUniProtKB:P80217 and ensembl:ENSP000003945791600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 20 of 20 rows

Cellular Component
1 to 20 of 24 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ifi35Ratcytoplasm located_inISOIFI35 (Homo sapiens)1624291 PMID:10950963RGDPMID:10950963
Ifi35Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Ifi35Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Ifi35Ratcytoplasm located_inIEAUniProtKB:P80217 and ensembl:ENSP000003945791600115GO_REF:0000107EnsemblGO_REF:0000107
Ifi35Ratcytosol located_inISOIFI35 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Ifi35Ratcytosol located_inIEAUniProtKB:P80217 and ensembl:ENSP000003945791600115GO_REF:0000107EnsemblGO_REF:0000107
Ifi35Ratcytosol located_inISOIFI35 (Homo sapiens)1624291 PMID:10779520 and PMID:10950963RGDPMID:10779520 and PMID:10950963
Ifi35Ratextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
Ifi35Ratextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
Ifi35Ratextracellular space located_inISOIFI35 (Homo sapiens)1624291 PMID:29038465RGDPMID:29038465
Ifi35Ratextracellular space located_inIEAUniProtKB:P80217 and ensembl:ENSP000003945791600115GO_REF:0000107EnsemblGO_REF:0000107
Ifi35Ratextracellular space located_inISOIfi35 (Mus musculus)1624291 PMID:29038465RGDPMID:29038465
Ifi35Ratextracellular space located_inIEAUniProtKB:Q9D8C4 and ensembl:ENSMUSP000000105021600115GO_REF:0000107EnsemblGO_REF:0000107
Ifi35Ratmembrane located_inISOIFI35 (Homo sapiens)1624291 PMID:10950963RGDPMID:10950963
Ifi35Ratmembrane located_inIEAUniProtKB:P80217 and ensembl:ENSP000003945791600115GO_REF:0000107EnsemblGO_REF:0000107
Ifi35Ratnucleolus located_inISOIFI35 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Ifi35Ratnucleolus located_inIEAUniProtKB:P80217 and ensembl:ENSP000003945791600115GO_REF:0000107EnsemblGO_REF:0000107
Ifi35Ratnucleoplasm located_inISOIFI35 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Ifi35Ratnucleoplasm located_inIEAUniProtKB:P80217 and ensembl:ENSP000003945791600115GO_REF:0000107EnsemblGO_REF:0000107
Ifi35Ratnucleus located_inIEAUniProtKB:P80217 and ensembl:ENSP000003945791600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function

  


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8288566   PMID:12477932  



Ifi35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,881,270 - 86,889,523 (+)NCBIGRCr8
mRatBN7.21086,381,023 - 86,389,279 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1086,381,010 - 86,389,952 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1091,418,433 - 91,426,447 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,893,398 - 90,901,717 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01086,286,702 - 86,295,023 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01089,358,376 - 89,366,628 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1089,358,376 - 89,366,626 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01089,156,392 - 89,164,644 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41090,475,323 - 90,483,575 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11090,489,692 - 90,497,943 (+)NCBI
Celera1085,098,510 - 85,106,762 (+)NCBICelera
Cytogenetic Map10q31NCBI
IFI35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381743,006,784 - 43,014,456 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1743,006,740 - 43,014,456 (+)EnsemblGRCh38hg38GRCh38
GRCh371741,158,801 - 41,166,473 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361738,412,351 - 38,419,999 (+)NCBINCBI36Build 36hg18NCBI36
Build 341738,412,350 - 38,419,998NCBI
Celera1737,815,041 - 37,822,746 (+)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1736,924,506 - 36,932,236 (+)NCBIHuRef
CHM1_11741,394,259 - 41,402,019 (+)NCBICHM1_1
T2T-CHM13v2.01743,864,072 - 43,871,742 (+)NCBIT2T-CHM13v2.0
Ifi35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911101,339,238 - 101,349,527 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11101,339,233 - 101,349,524 (+)EnsemblGRCm39 Ensembl
GRCm3811101,448,412 - 101,458,701 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,448,407 - 101,458,698 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711101,309,726 - 101,320,015 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611101,264,571 - 101,274,552 (+)NCBIMGSCv36mm8
Celera11113,135,844 - 113,146,133 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1165.07NCBI
Ifi35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,790,383 - 16,802,664 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,790,998 - 16,798,993 (+)NCBIChiLan1.0ChiLan1.0
IFI35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21921,977,994 - 21,985,622 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11723,867,276 - 23,874,824 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,310,106 - 14,317,648 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11714,539,625 - 14,544,931 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1714,539,625 - 14,544,931 (-)Ensemblpanpan1.1panPan2
IFI35
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,050,438 - 20,061,346 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,050,438 - 20,061,319 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,512,038 - 19,522,948 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0920,768,845 - 20,779,755 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl920,768,851 - 20,779,732 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,553,944 - 19,564,859 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0919,820,685 - 19,831,593 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0919,922,745 - 19,933,656 (-)NCBIUU_Cfam_GSD_1.0
Ifi35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,364,845 - 19,367,164 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649017,708,071 - 17,713,492 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649017,707,997 - 17,710,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFI35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1219,879,387 - 19,890,314 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11219,879,386 - 19,890,330 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21219,991,296 - 20,002,226 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IFI35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,276,493 - 63,284,196 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,273,829 - 63,284,283 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607734,063,175 - 34,070,917 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ifi35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,260,476 - 1,262,080 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,260,476 - 1,268,015 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Ifi35
123 total Variants

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:66
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000028067
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 77 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108256485692369470Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat

1 to 10 of 77 rows
RH135191  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21086,389,021 - 86,389,219 (+)MAPPERmRatBN7.2
Rnor_6.01089,366,371 - 89,366,568NCBIRnor6.0
Rnor_5.01089,164,387 - 89,164,584UniSTSRnor5.0
RGSC_v3.41090,483,318 - 90,483,515UniSTSRGSC3.4
Celera1085,106,505 - 85,106,702UniSTS
RH 3.4 Map10877.1UniSTS
Cytogenetic Map10q32.1UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000028067   ⟹   ENSRNOP00000028067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1086,381,010 - 86,389,503 (+)Ensembl
Rnor_6.0 Ensembl1089,358,376 - 89,366,626 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101419   ⟹   ENSRNOP00000092407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1086,381,010 - 86,389,952 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117498   ⟹   ENSRNOP00000090927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1086,386,878 - 86,389,503 (+)Ensembl
RefSeq Acc Id: NM_001009625   ⟹   NP_001009625
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81086,881,270 - 86,889,523 (+)NCBI
mRatBN7.21086,381,023 - 86,389,279 (+)NCBI
Rnor_6.01089,358,376 - 89,366,628 (+)NCBI
Rnor_5.01089,156,392 - 89,164,644 (+)NCBI
RGSC_v3.41090,475,323 - 90,483,575 (+)RGD
Celera1085,098,510 - 85,106,762 (+)RGD
Sequence:
1 to 9 of 9 rows
Protein RefSeqs NP_001009625 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88222 (Get FASTA)   NCBI Sequence Viewer  
  EDM06129 (Get FASTA)   NCBI Sequence Viewer  
  EDM06130 (Get FASTA)   NCBI Sequence Viewer  
  EDM06131 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000028067.3
  ENSRNOP00000090927
  ENSRNOP00000090927.1
  ENSRNOP00000092407.1
1 to 9 of 9 rows
RefSeq Acc Id: NP_001009625   ⟸   NM_001009625
- UniProtKB: Q5M849 (UniProtKB/TrEMBL),   F7FJL7 (UniProtKB/TrEMBL),   A0A8I6ACU1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000028067   ⟸   ENSRNOT00000028067
Ensembl Acc Id: ENSRNOP00000092407   ⟸   ENSRNOT00000101419
Ensembl Acc Id: ENSRNOP00000090927   ⟸   ENSRNOT00000117498
NID   Nmi/IFP

Name Modeler Protein Id AA Range Protein Structure
AF-Q5M849-F1-model_v2 AlphaFold Q5M849 1-286 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13697761
Promoter ID:EPDNEW_R8286
Type:initiation region
Name:Ifi35_1
Description:interferon-induced protein 35
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01089,358,403 - 89,358,463EPDNEW


1 to 25 of 25 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-23171 BioCyc
Ensembl Genes ENSRNOG00000020678 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000028067.5 UniProtKB/TrEMBL
  ENSRNOT00000101419.1 UniProtKB/TrEMBL
  ENSRNOT00000117498 ENTREZGENE
  ENSRNOT00000117498.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7321956 IMAGE-MGC_LOAD
InterPro Interferon_induced_35kDa_N UniProtKB/TrEMBL
  Nmi/IFP35 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
KEGG Report rno:287719 UniProtKB/TrEMBL
MGC_CLONE MGC:108976 IMAGE-MGC_LOAD
NCBI Gene 287719 ENTREZGENE
PANTHER INTERFERON-INDUCED PROTEIN 35/NMI N-MYC/STAT INTERACTING PROTEIN UniProtKB/TrEMBL
  PTHR15225:SF1 UniProtKB/TrEMBL
Pfam IFP_35_N UniProtKB/TrEMBL
  NID UniProtKB/TrEMBL
PhenoGen Ifi35 PhenoGen
RatGTEx ENSRNOG00000020678 RatGTEx
UniProt A0A8I6ACU1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AH04_RAT UniProtKB/TrEMBL
  A6HJC6_RAT UniProtKB/TrEMBL
  F7FJL7 ENTREZGENE, UniProtKB/TrEMBL
  Q5M849 ENTREZGENE, UniProtKB/TrEMBL
1 to 25 of 25 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Ifi35  interferon-induced protein 35  Ifi35_predicted  interferon-induced protein 35 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ifi35_predicted  interferon-induced protein 35 (predicted)      Symbol and Name status set to approved 70820 APPROVED