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Gene: Clec4d (C-type lectin domain family 4, member D) Rattus norvegicus

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Symbol:

Clec4d

Name:

C-type lectin domain family 4, member D

RGD ID:

1303339

Description:

Predicted to enable D-mannose binding activity; immunoglobulin receptor binding activity; and pattern recognition receptor activity. Predicted to be involved in antifungal innate immune response; positive regulation of canonical NF-kappaB signal transduction; and positive regulation of myeloid dendritic cell activation. Predicted to act upstream of or within several processes, including Fc-gamma receptor signaling pathway; T cell differentiation involved in immune response; and defense response to bacterium. Predicted to be located in membrane. Predicted to be active in external side of plasma membrane. Orthologous to human CLEC4D (C-type lectin domain family 4 member D); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 3,7-dihydropurine-6-thione.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

C-type (calcium dependent, carbohydrate recognition domain) lectin, superfamily member 8; C-type lectin domain family 4 member D; C-type lectin superfamily member 8; Clecsf8; macrophage C-type lectin; Mcl

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CLEC4D (C-type lectin domain family 4 member D)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Clec4d (C-type lectin domain family 4, member d)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Clec4d (C-type lectin domain family 4 member D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CLEC4D (C-type lectin domain family 4 member D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC611536 (C-type lectin domain family 4 member D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Clec4d (C-type lectin domain family 4 member D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LOC110258710 (C-type lectin domain family 4 member D-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CLEC4D (C-type lectin domain family 4 member D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Clec4d (C-type lectin domain family 4 member D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CLEC4D (C-type lectin domain family 4 member D)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Clec4d (C-type lectin domain family 4, member d)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	illr1 (immune-related, lectin-like receptor 1)	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	zgc:174904	Alliance	DIOPT (OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	illr4 (immune-related, lectin-like receptor 4)	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	lectin-37Db	Alliance	DIOPT (Hieranoid\|InParanoid\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	clec-198	Alliance	DIOPT (PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	clec-199	Alliance	DIOPT (PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	clec-202	Alliance	DIOPT (PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	clec-266	Alliance	DIOPT (Ensembl Compara\|SonicParanoid)
Caenorhabditis elegans (roundworm):	clec-150	Alliance	DIOPT (PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG14866	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	clec4m	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	clec4e	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100494969	Alliance	DIOPT (Hieranoid\|InParanoid\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	158,275,287 - 158,286,978 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	158,275,341 - 158,287,055 (+)	Ensembl				GRCr8
mRatBN7.2	4	156,589,591 - 156,599,279 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	156,589,792 - 156,598,848 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	162,841,890 - 162,851,041 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	158,624,772 - 158,633,925 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	157,270,184 - 157,279,333 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	156,253,084 - 156,264,766 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	156,253,079 - 156,264,769 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	223,269,999 - 223,281,665 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	159,883,556 - 159,892,609 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	145,381,212 - 145,388,954 (+)	NCBI		Celera
RGSC_v3.1	4	160,128,491 - 160,137,545 (+)	NCBI
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

lung disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-alpha-phellandrene (ISO)

1,1-dichloroethene (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3,7-dihydropurine-6-thione (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP)

all-trans-retinoic acid (ISO)

alpha-phellandrene (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

cobalt dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

dibenz[a,h]anthracene (ISO)

Dibutyl phosphate (ISO)

dichlorine (ISO)

dioxygen (EXP)

doxorubicin (ISO)

folic acid (ISO)

hypochlorous acid (ISO)

isoprenaline (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

mercaptopurine (EXP)

nickel atom (ISO)

paracetamol (ISO)

paraquat (ISO)

pioglitazone (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

progesterone (ISO)

purine-6-thiol (EXP)

silicon dioxide (EXP,ISO)

sodium arsenate (ISO)

streptozocin (ISO)

sulforaphane (ISO)

testosterone (EXP)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

XL147 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adaptive immune response (IEA,ISO)

antifungal innate immune response (IBA,ISO,ISS)

defense response to bacterium (ISO)

Fc-gamma receptor signaling pathway (ISO)

immune system process (IEA)

innate immune response (IEA,ISO)

positive regulation of canonical NF-kappaB signal transduction (ISO)

positive regulation of myeloid dendritic cell activation (ISO,ISS)

T cell differentiation involved in immune response (ISO)

Cellular Component

external side of plasma membrane (IBA)

plasma membrane (IEA,ISO,ISS)

Molecular Function

carbohydrate binding (IBA,IEA)

D-mannose binding (ISO,ISS)

immunoglobulin receptor binding (ISO)

metal ion binding (IEA)

pattern recognition receptor activity (IBA,ISO,ISS)

protein binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	The human C-type lectin CLECSF8 is a novel monocyte/macrophage endocytic receptor.	Arce I, etal., Eur J Immunol 2004 Jan;34(1):210-20.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Mincle, the receptor for mycobacterial cord factor, forms a functional receptor complex with MCL and FcεRI-γ.	Lobato-Pascual A, etal., Eur J Immunol. 2013 Dec;43(12):3167-74. doi: 10.1002/eji.201343752. Epub 2013 Aug 26.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15368084	PMID:23602766	PMID:31725411

Genomics

Comparative Map Data

Clec4d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	158,275,287 - 158,286,978 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	158,275,341 - 158,287,055 (+)	Ensembl				GRCr8
mRatBN7.2	4	156,589,591 - 156,599,279 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	156,589,792 - 156,598,848 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	162,841,890 - 162,851,041 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	158,624,772 - 158,633,925 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	157,270,184 - 157,279,333 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	156,253,084 - 156,264,766 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	156,253,079 - 156,264,769 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	223,269,999 - 223,281,665 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	159,883,556 - 159,892,609 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	145,381,212 - 145,388,954 (+)	NCBI		Celera
RGSC_v3.1	4	160,128,491 - 160,137,545 (+)	NCBI
Cytogenetic Map	4	q42	NCBI

CLEC4D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	8,513,503 - 8,531,696 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	8,509,475 - 8,522,366 (+)	Ensembl			hg38	GRCh38
GRCh37	12	8,666,099 - 8,674,962 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	8,557,403 - 8,566,229 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	8,557,402 - 8,566,225	NCBI
Celera	12	10,202,132 - 10,210,958 (+)	NCBI		Celera
Cytogenetic Map	12	p13.31	NCBI
HuRef	12	8,448,485 - 8,457,311 (+)	NCBI		HuRef
CHM1_1	12	8,635,100 - 8,643,926 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	8,496,932 - 8,515,063 (+)	NCBI		T2T-CHM13v2.0

Clec4d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	123,239,066 - 123,252,227 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	123,239,070 - 123,252,224 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	123,262,107 - 123,275,268 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	123,262,111 - 123,275,265 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	123,212,125 - 123,225,286 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	123,227,736 - 123,240,884 (+)	NCBI		MGSCv36	mm8
Celera	6	125,059,667 - 125,072,919 (+)	NCBI		Celera
Cytogenetic Map	6	F2	NCBI
cM Map	6	58.33	NCBI

Clec4d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	5,267,161 - 5,277,090 (-)	Ensembl
ChiLan1.0	NW_004955413	5,267,548 - 5,276,969 (-)	NCBI	ChiLan1.0	ChiLan1.0

CLEC4D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	14,041,441 - 14,050,413 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	14,038,201 - 14,046,060 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	8,599,654 - 8,608,494 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	8,814,680 - 8,823,484 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	8,814,680 - 8,823,484 (+)	Ensembl			panPan2	panpan1.1

LOC611536
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	37,520,289 - 37,559,920 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	37,551,064 - 37,558,847 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	9,056,404 - 9,095,670 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	37,874,289 - 37,913,533 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	37,860,374 - 37,915,627 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	37,748,924 - 37,788,104 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	37,790,476 - 37,829,811 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	8,543,144 - 8,582,370 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Clec4d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	99,887,289 - 99,896,017 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936858	303,639 - 312,083 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936858	303,639 - 312,092 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC110258710
(Sus scrofa - pig)

No map positions available.

CLEC4D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	8,294,999 - 8,303,866 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666089	393,835 - 402,286 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Clec4d
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	24,047,554 - 24,056,570 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Clec4d
72 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	104
Count of miRNA genes:	87
Interacting mature miRNAs:	92
Transcripts:	ENSRNOT00000013536, ENSRNOT00000071095
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	134095016	179095016	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	149763204	169799698	Rat
61446	Coreg2	Compensatory renal growth QTL 2	3.5		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	4	150095743	159267220	Rat
6478757	Anxrr44	Anxiety related response QTL 44		0.01087	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
1358364	Sradr4	Stress Responsive Adrenal Weight QTL 4	4.92		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	131384565	176384565	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	123870974	168870974	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	157292416	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	127263297	172263297	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	126334185	171334185	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
6478782	Anxrr52	Anxiety related response QTL 52		0.02091	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	124700988	169700988	Rat
6478720	Alc23	Alcohol consumption QTL 23		0.00509	drinking behavior trait (VT:0001422)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	155834926	184426481	Rat
6478785	Anxrr53	Anxiety related response QTL 53		0.01397	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
6478728	Anxrr36	Anxiety related response QTL 36		0.01061	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	134199006	168870974	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	148121375	176967367	Rat
6478733	Anxrr37	Anxiety related response QTL 37		0.00095	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
6478737	Anxrr38	Anxiety related response QTL 38		0.00159	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	148834094	168870974	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	48	94	79	78	47	90	47	6	300	171	11	68	58	74	31	9	9

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001003707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY339882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY494065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013536 ⟹ ENSRNOP00000013536

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	156,253,079 - 156,264,769 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110120 ⟹ ENSRNOP00000088281

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	158,275,341 - 158,287,055 (+)	Ensembl
mRatBN7.2 Ensembl	4	156,589,792 - 156,598,848 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110309 ⟹ ENSRNOP00000081209

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	156,593,947 - 156,598,848 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000135922 ⟹ ENSRNOP00000108621

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	158,275,341 - 158,286,968 (+)	Ensembl

RefSeq Acc Id:

NM_001003707 ⟹ NP_001003707

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	158,275,343 - 158,284,976 (+)	NCBI
mRatBN7.2	4	156,589,642 - 156,599,279 (+)	NCBI
Rnor_6.0	4	156,253,269 - 156,262,321 (+)	NCBI
Rnor_5.0	4	223,269,999 - 223,281,665 (+)	NCBI
RGSC_v3.4	4	159,883,556 - 159,892,609 (+)	RGD
Celera	4	145,381,212 - 145,388,954 (+)	RGD

Sequence:

show sequence

CCTGGAATCTCCTGACATATAGACATACATAATGTGGCTGGAAGAATCCCAAATGAAATCAAAA
GGTGCCCTGCATCCCCGGCGGATCCCTTGGGTTTGTGCTGTTGTTTCCATCTCGTTCCTCAGTG
CTTGCTTTATCTCAACTTGTGTGGTGACTCATTACTTCTTACTCTGGAAGAGAGGAAGCGCATT
GAAGTTCTCAGACTACCACACAAGGCTAACATGCATCCTAGAGGAGCCACAGCCTGGAGCTACA
GGAGGTACCTGGACCTGCTGTCCTGTTAGCTGGAGAGCATTCCAGTCTAACTGTTACTTTGCTC
TTAATGACAACCAGACCTGGCATGAGAGTGAGAGGAACTGCTCGGGGATGAGCAGTCATCTGGT
GACCATCAACACAGAAGCAGAACAGGATTTTGTGACTCAACTTTTGGATGAACAATTTTCCTAT
TTCTTGGGACTTTCTTATGAGAAGGTGGAAGGTCAATGGCAATGGGTGGACAAGACGCCATTCA
ACCCGAACGTGGTATTCTGGAAAGTTGGGGAACCCAAGGACTCTATGGAAGAAGACTGTGTTGT
CCTTGTTTATGACCAAGATAAATGGGTCTGGAATGATTTTCCTTGTCACTTTGAGATGGGAAGG
ATTTGTAAGTTACCTGGAGCAACATTTGATTGGAATCCCTCGAAGTGATCCTTATGATGGGGAT
GGTGAAGACA

hide sequence

RefSeq Acc Id:

XM_006237322 ⟹ XP_006237384

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	158,275,294 - 158,286,978 (+)	NCBI
mRatBN7.2	4	156,589,592 - 156,598,969 (+)	NCBI
Rnor_6.0	4	156,253,084 - 156,264,766 (+)	NCBI
Rnor_5.0	4	223,269,999 - 223,281,665 (+)	NCBI

Sequence:

show sequence

GTACATTAGAGGAAACTCCTTTTTTCTAAGATTTCTTCTTTTTTCACTTAGCTTTCTTGTACTT
ACTGATCTTGCACTTACCGATCTTAGCAAAATAAGCCAGATATATTGGTGTCCAGTCTTAAATG
TTTCTGAAGAGACACCTGTGATGGAAATATACACCCTGGACAAGAAGTAAAGAGGAGCCTGGAA
TCTCCTGACATATAGACATACATAATGTGGCTGGAAGAATCCCAAATGAAATCAAAAGGTGCCC
TGCATCCCCAGCGGATCCCTTGGGTTTGTGCTGTTGTTTCCATCTCGTTCCTCAGTGCTTGCTT
TATCTCAACTTGTTTGGTGACTCATTACTTCTTACTCTGGAAGAGAGGAAGCGCGTTGAAGTTC
TCAGACTACCACACAAGGCTAACATGCATCCTAGAGGAGCCACAGCCTGGAGCTACAGGTACCT
GGACCTGCTGTCCTGTTAGCTGGAGAGCATTCCAGTCTAACTGTTACTTTCCTCTTAATGACAA
CCAGACCTGGCATGAGAGTGAGAGGAACTGCTCGGGGATGAGCAGTCATCTGGTGACCATCAAC
ACAGAAGCAGAACAGGATTTTGTGACTCAACTTTTGGATGAACAATTTTCCTATTTCTTGGGAC
TTTCTTATGAGAAGGTGGAAGGTCAATGGCAATGGGTGGACAAGACGCCATTCAACCCAAACGT
GGTATTCTGGAAAGTTGGGGAACCCAAGGACTATATGGAAGAAGACTGTGTTGTCCTTGTTTAT
GACCAAGATAAATGGGTCTGGAATGATTTTCCTTGTCACTTTGAGATGGGAAGGATTTGTAAGT
TACCTGGAGCAACATTTGATTGGAATCCCTCGAAGTGATCCTTATGATGGGGATGGAGAAGACA
AACCTATCAGACCCAGGGAAAGTGTATGTGTCATAGAAATAGAGAACACATTGGGTCATAGAGC
ATAGTTAACCACGAGGATGTTCATCATTATTTTTGTTTAAATTTAATTCAATGTACATAGTGTG
GTTTGCCCTCCCTCTCTCCCCCCCCTCTTTCTCTCATGTGTGTGTGTATGTGTGTACACACCAG
CATGTGCACACATATGTTTAAGATAGTAAGGTTCTGTGTGGTGTTTTGGTAGAGAGAATGACCA
TCATCCTATGGGATTCAGGTTTTAATTGTTGCTTCCTTGAGAGTATTTTAAGAATTTATTTTTC
AGTTGGTATGTTTTTGTTTTATATTTAATGAAAGGATTAGGTTTGTAATCTTTTTTCATTTTTC
TCTTGTCTTAATTATTACCTCTTAAAATCCAAACTTACAGCAGACAATATGGTAGTGATAGATC
ACATTTTATTCTTCTCTCATACATTACATTGTGACCACAGATTCCATCTATTCTTCCCAGTCCT
CTCTACTACCTCTGTTTCAGATCCACCCTCCCCATTTCCCTTCAGAATAGGGCACGGCTTCCAG
GAATATCTGCTGAATACAGCATAATAAATTGCAATAAGCTAGGCGCAAACCCTCATATCAAGGC
TGGATGAAGCAACCCAGTAGGAGAAAAGGGTCCCATTTTAGCCTAAATCTCAGTTTAAAATTTT
AACAATTTTATTGATTGATATTTTACTTTCACATTTAAATAGTTCCTGAAGATCTCGCAGGAAA
ACAGTGTAAAATAGGCTTCAGTGATGGTATTGCACAAGAAGAAAAGAAGCAAATAGACCTTTTA
GCAATTTTCTTCTTTCTTCATCCTAGCTGTTGGGTCAAAGCAGGTAGTTTCATGATGACCTAAC
TTCTTTGTAATGCGCTCTTTTCAACCCCGTTTTAGCTGAGGAAACAAAGTCCCGGGAAGCTGAA
GAGCTCCCATTCGTATTGCTTTTTCATGACAATCAGAACTATAGTTCACATCTACCTTTTCCTG
GAGATGAACCCCATCTCCATTCTACTTACAGTAAATTAATGGCAATAAGCTGGCCTTTTGGCTT
GGCTAAGGACTCAATTTTGTTAATTATTTGAAGTTCTACTCTATTGCAGTTTTCATTTTGAATC
ATAAAGAGAGCACATTTCAATTTTTTTTTAAAAAATTGTTCCAATGTTTAAGAACTGTACTATT
GGTAGGAATGTCACTGAATTAGCAACCTCCAATGTGGCAGAACATTCCCCTAATGAATAAAGAT
TTCAAGGAGCCAATCACTGGGCAAGAGACAGGACTTTTGGGTTGGAGAGAGGAAGAGGGGAAGA
GGAGAAAAGATACTCACTTTGGGGACGAAAGATGACCATGGAGGCCAAAATGTAGGTAGCAGAA
GCCCTGGTTCATGTGCTTGGACCTGCTTCCAGAGGATTTATAACTTAGAATAGCTTACAAATAT
CAATTGGCTTCCAGAGAAAAAGGTACGATGACAAAGTGTGGGTTTGTGAGAAGTGCACCCTAAC
TAGCTGTGGGAATTTGGAAGCATGGGGCTGGCATGGCAGTTACCTGTAAGAGAACCACAAGATG
AGCGGTTGCTCCATGAAGCTTGCTCCATAGAGGTGGAGAGACTGCTAGGGCCAGAGAGTAGCCA
GCGTTAGTGTGAGATGGTGCCTTTTTAATATTTCCCGCTACACTACAATTAGAATGTTTGTACT
ATTAGTTATGACTTACCATGAGAAAGCCTACTGGGGGCTATAGAGATAGATCAGTGGTTACGAT
TGCTTGCTCTTCTTCCAGAGGACCTGAGTTTGATTCCCAGTACCTACATCATAGTGGCCTACAG
CACCAACTCTGGGGTATTTGACTCTTCTGGACTACACAACACAACAACTTCTGCATATACAGTA
CACAAATGTACACACACACACACACACACACACACACACACACACACACACACAAGGAAATTAA
ATAAACATTTAAAAGAAAAGTACTGTTCTGGTTTTGCTTGAAATTTGATTTGCTAATATTTCCT
ATCTCTGAGCTGAGAATTTCCAAGCAACAACTCTTTAACCTTTCTTTTCCTTCCCTATATTGAA
AGGCAACAACTACTCTGCAAGTTTGTTAACGACTTTCTGGGTTAAATGTAGAACATTAAGGTTT
GGTTCAGTGTGACAGTGTAACATGTGTTTTGTGTGTGTTCTCATTAAAGATGGTATCTTTAAAA
GAAGTGGAACTAAGTAACTTCACATTGGGTTGAAAATACTAATTAAATCATAACACTCAAGACA
AATTGAAATAATTTTATGTATTAGTGGGATTTATATATTTAATATTATCCATTTTGATGTACAA
ATTATACACCTGTCTATGATGAAATCCAGTAGTCAATAAAATATAACCCTCCATGATTTCCTTC
ATTGATTTTGCAA

hide sequence

RefSeq Acc Id:

XM_017592704 ⟹ XP_017448193

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	158,275,294 - 158,286,978 (+)	NCBI
mRatBN7.2	4	156,589,592 - 156,598,969 (+)	NCBI
Rnor_6.0	4	156,253,084 - 156,264,766 (+)	NCBI

Sequence:

show sequence

GTACATTAGAGGAAACTCCTTTTTTCTAAGATTTCTTCTTTTTTCACTTAGCTTTCTTGTACTT
ACTGATCTTGCACTTACCGATCTTAGCAAAATAAGCCAGATATATTGGTGTCCAGTCTTAAATG
TTTCTGAAGAGACACCTGTGATGGAAATATACACCCTGGACAAGAAGTAAAGAGGAGCCTGGAA
TCTCCTGACATATAGACATACATAATGTGGCTGGAAGAATCCCAAATGAAATCAAAAGGTGCCC
TGCATCCCCAGCGGATCCCTTGGGTTTGTGCTGTTGTTTCCATCTCGTTCCTCAGTGCTTGCTT
TATCTCAACTTGTTTGGGAGGTACCTGGACCTGCTGTCCTGTTAGCTGGAGAGCATTCCAGTCT
AACTGTTACTTTCCTCTTAATGACAACCAGACCTGGCATGAGAGTGAGAGGAACTGCTCGGGGA
TGAGCAGTCATCTGGTGACCATCAACACAGAAGCAGAACAGGATTTTGTGACTCAACTTTTGGA
TGAACAATTTTCCTATTTCTTGGGACTTTCTTATGAGAAGGTGGAAGGTCAATGGCAATGGGTG
GACAAGACGCCATTCAACCCAAACGTGGTATTCTGGAAAGTTGGGGAACCCAAGGACTATATGG
AAGAAGACTGTGTTGTCCTTGTTTATGACCAAGATAAATGGGTCTGGAATGATTTTCCTTGTCA
CTTTGAGATGGGAAGGATTTGTAAGTTACCTGGAGCAACATTTGATTGGAATCCCTCGAAGTGA
TCCTTATGATGGGGATGGAGAAGACAAACCTATCAGACCCAGGGAAAGTGTATGTGTCATAGAA
ATAGAGAACACATTGGGTCATAGAGCATAGTTAACCACGAGGATGTTCATCATTATTTTTGTTT
AAATTTAATTCAATGTACATAGTGTGGTTTGCCCTCCCTCTCTCCCCCCCCTCTTTCTCTCATG
TGTGTGTGTATGTGTGTACACACCAGCATGTGCACACATATGTTTAAGATAGTAAGGTTCTGTG
TGGTGTTTTGGTAGAGAGAATGACCATCATCCTATGGGATTCAGGTTTTAATTGTTGCTTCCTT
GAGAGTATTTTAAGAATTTATTTTTCAGTTGGTATGTTTTTGTTTTATATTTAATGAAAGGATT
AGGTTTGTAATCTTTTTTCATTTTTCTCTTGTCTTAATTATTACCTCTTAAAATCCAAACTTAC
AGCAGACAATATGGTAGTGATAGATCACATTTTATTCTTCTCTCATACATTACATTGTGACCAC
AGATTCCATCTATTCTTCCCAGTCCTCTCTACTACCTCTGTTTCAGATCCACCCTCCCCATTTC
CCTTCAGAATAGGGCACGGCTTCCAGGAATATCTGCTGAATACAGCATAATAAATTGCAATAAG
CTAGGCGCAAACCCTCATATCAAGGCTGGATGAAGCAACCCAGTAGGAGAAAAGGGTCCCATTT
TAGCCTAAATCTCAGTTTAAAATTTTAACAATTTTATTGATTGATATTTTACTTTCACATTTAA
ATAGTTCCTGAAGATCTCGCAGGAAAACAGTGTAAAATAGGCTTCAGTGATGGTATTGCACAAG
AAGAAAAGAAGCAAATAGACCTTTTAGCAATTTTCTTCTTTCTTCATCCTAGCTGTTGGGTCAA
AGCAGGTAGTTTCATGATGACCTAACTTCTTTGTAATGCGCTCTTTTCAACCCCGTTTTAGCTG
AGGAAACAAAGTCCCGGGAAGCTGAAGAGCTCCCATTCGTATTGCTTTTTCATGACAATCAGAA
CTATAGTTCACATCTACCTTTTCCTGGAGATGAACCCCATCTCCATTCTACTTACAGTAAATTA
ATGGCAATAAGCTGGCCTTTTGGCTTGGCTAAGGACTCAATTTTGTTAATTATTTGAAGTTCTA
CTCTATTGCAGTTTTCATTTTGAATCATAAAGAGAGCACATTTCAATTTTTTTTTAAAAAATTG
TTCCAATGTTTAAGAACTGTACTATTGGTAGGAATGTCACTGAATTAGCAACCTCCAATGTGGC
AGAACATTCCCCTAATGAATAAAGATTTCAAGGAGCCAATCACTGGGCAAGAGACAGGACTTTT
GGGTTGGAGAGAGGAAGAGGGGAAGAGGAGAAAAGATACTCACTTTGGGGACGAAAGATGACCA
TGGAGGCCAAAATGTAGGTAGCAGAAGCCCTGGTTCATGTGCTTGGACCTGCTTCCAGAGGATT
TATAACTTAGAATAGCTTACAAATATCAATTGGCTTCCAGAGAAAAAGGTACGATGACAAAGTG
TGGGTTTGTGAGAAGTGCACCCTAACTAGCTGTGGGAATTTGGAAGCATGGGGCTGGCATGGCA
GTTACCTGTAAGAGAACCACAAGATGAGCGGTTGCTCCATGAAGCTTGCTCCATAGAGGTGGAG
AGACTGCTAGGGCCAGAGAGTAGCCAGCGTTAGTGTGAGATGGTGCCTTTTTAATATTTCCCGC
TACACTACAATTAGAATGTTTGTACTATTAGTTATGACTTACCATGAGAAAGCCTACTGGGGGC
TATAGAGATAGATCAGTGGTTACGATTGCTTGCTCTTCTTCCAGAGGACCTGAGTTTGATTCCC
AGTACCTACATCATAGTGGCCTACAGCACCAACTCTGGGGTATTTGACTCTTCTGGACTACACA
ACACAACAACTTCTGCATATACAGTACACAAATGTACACACACACACACACACACACACACACA
CACACACACACACACAAGGAAATTAAATAAACATTTAAAAGAAAAGTACTGTTCTGGTTTTGCT
TGAAATTTGATTTGCTAATATTTCCTATCTCTGAGCTGAGAATTTCCAAGCAACAACTCTTTAA
CCTTTCTTTTCCTTCCCTATATTGAAAGGCAACAACTACTCTGCAAGTTTGTTAACGACTTTCT
GGGTTAAATGTAGAACATTAAGGTTTGGTTCAGTGTGACAGTGTAACATGTGTTTTGTGTGTGT
TCTCATTAAAGATGGTATCTTTAAAAGAAGTGGAACTAAGTAACTTCACATTGGGTTGAAAATA
CTAATTAAATCATAACACTCAAGACAAATTGAAATAATTTTATGTATTAGTGGGATTTATATAT
TTAATATTATCCATTTTGATGTACAAATTATACACCTGTCTATGATGAAATCCAGTAGTCAATA
AAATATAACCCTCCATGATTTCCTTCATTGATTTTGCAA

hide sequence

RefSeq Acc Id:

XM_039107890 ⟹ XP_038963818

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	158,275,293 - 158,286,978 (+)	NCBI
mRatBN7.2	4	156,589,591 - 156,598,969 (+)	NCBI

RefSeq Acc Id:

XM_063286350 ⟹ XP_063142420

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	158,275,287 - 158,282,520 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001003707	(Get FASTA)	NCBI Sequence Viewer
	XP_006237384	(Get FASTA)	NCBI Sequence Viewer
	XP_017448193	(Get FASTA)	NCBI Sequence Viewer
	XP_038963818	(Get FASTA)	NCBI Sequence Viewer
	XP_063142420	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAR02097	(Get FASTA)	NCBI Sequence Viewer
	AAS76661	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000108621
GenBank Protein	Q69FH1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001003707 ⟸ NM_001003707

- UniProtKB:

Q69FH1 (UniProtKB/Swiss-Prot), Q2TUL6 (UniProtKB/Swiss-Prot), G3V7B1 (UniProtKB/TrEMBL), A6ILH2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MWLEESQMKSKGALHPRRIPWVCAVVSISFLSACFISTCVVTHYFLLWKRGSALKFSDYHTRLT
CILEEPQPGATGGTWTCCPVSWRAFQSNCYFALNDNQTWHESERNCSGMSSHLVTINTEAEQDF
VTQLLDEQFSYFLGLSYEKVEGQWQWVDKTPFNPNVVFWKVGEPKDSMEEDCVVLVYDQDKWVW
NDFPCHFEMGRICKLPGATFDWNPSK

hide sequence

RefSeq Acc Id:	XP_006237384 ⟸ XM_006237322
- Peptide Label:	isoform X1
- UniProtKB:	Q69FH1 (UniProtKB/Swiss-Prot), Q2TUL6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MWLEESQMKSKGALHPQRIPWVCAVVSISFLSACFISTCLVTHYFLLWKRGSALKFSDYHTRLT CILEEPQPGATGTWTCCPVSWRAFQSNCYFPLNDNQTWHESERNCSGMSSHLVTINTEAEQDFV TQLLDEQFSYFLGLSYEKVEGQWQWVDKTPFNPNVVFWKVGEPKDYMEEDCVVLVYDQDKWVWN DFPCHFEMGRICKLPGATFDWNPSK hide sequence

RefSeq Acc Id:	XP_017448193 ⟸ XM_017592704
- Peptide Label:	isoform X2
- UniProtKB:	Q69FH1 (UniProtKB/Swiss-Prot), Q2TUL6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MWLEESQMKSKGALHPQRIPWVCAVVSISFLSACFISTCLGGTWTCCPVSWRAFQSNCYFPLND NQTWHESERNCSGMSSHLVTINTEAEQDFVTQLLDEQFSYFLGLSYEKVEGQWQWVDKTPFNPN VVFWKVGEPKDYMEEDCVVLVYDQDKWVWNDFPCHFEMGRICKLPGATFDWNPSK hide sequence

Ensembl Acc Id:

ENSRNOP00000013536 ⟸ ENSRNOT00000013536

RefSeq Acc Id:	XP_038963818 ⟸ XM_039107890
- Peptide Label:	isoform X3
- UniProtKB:	Q69FH1 (UniProtKB/Swiss-Prot), Q2TUL6 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000088281 ⟸ ENSRNOT00000110120

Ensembl Acc Id:

ENSRNOP00000081209 ⟸ ENSRNOT00000110309

RefSeq Acc Id:	XP_063142420 ⟸ XM_063286350
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000108621 ⟸ ENSRNOT00000135922

Protein Domains

C-type lectin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q69FH1-F1-model_v2	AlphaFold	Q69FH1	1-218	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693375

Promoter ID:

EPDNEW_R3900

Type:

single initiation site

Name:

Clec4d_1

Description:

C-type lectin domain family 4, member D

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	156,253,129 - 156,253,189	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303339	AgrOrtholog
BioCyc Gene	G2FUF-43126	BioCyc
Ensembl Genes	ENSRNOG00000010181	Ensembl
	ENSRNOG00000067848	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000135922	ENTREZGENE
Gene3D-CATH	3.10.100.10	UniProtKB/Swiss-Prot
InterPro	C-type_lectin-like	UniProtKB/Swiss-Prot
	C-type_lectin-like/link_sf	UniProtKB/Swiss-Prot
	C-type_lectin/snaclec_domain	UniProtKB/Swiss-Prot
	CD209-like_CTLD	UniProtKB/Swiss-Prot
	CTDL_fold	UniProtKB/Swiss-Prot
KEGG Report	rno:362432	UniProtKB/Swiss-Prot
NCBI Gene	362432	ENTREZGENE
PANTHER	MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED	UniProtKB/Swiss-Prot
Pfam	Lectin_C	UniProtKB/Swiss-Prot
PhenoGen	Clec4d	PhenoGen
PROSITE	C_TYPE_LECTIN_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000010181	RatGTEx
	ENSRNOG00000067848	RatGTEx
SMART	CLECT	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF56436	UniProtKB/Swiss-Prot
UniProt	A0ABK0M494_RAT	UniProtKB/TrEMBL
	A6ILH2	ENTREZGENE, UniProtKB/TrEMBL
	CLC4D_RAT	UniProtKB/Swiss-Prot
	G3V7B1	ENTREZGENE, UniProtKB/TrEMBL
	Q2TUL6	ENTREZGENE
	Q69FH1	ENTREZGENE
UniProt Secondary	Q2TUL6	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-06-08	Clec4d	C-type lectin domain family 4, member D	Clec4d	C-type lectin domain family 4, member d	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Clec4d	C-type lectin domain family 4, member d	Clecsf8	C-type (calcium dependent, carbohydrate recognition domain) lectin, superfamily member 8	Symbol and Name updated	1299863	APPROVED
2005-02-14	Clecsf8	C-type (calcium dependent, carbohydrate recognition domain) lectin, superfamily member 8			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD