Tmem248 (transmembrane protein 248) - Rat Genome Database

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Gene: Tmem248 (transmembrane protein 248) Rattus norvegicus
Analyze
Symbol: Tmem248
Name: transmembrane protein 248
RGD ID: 1303319
Description: Predicted to be located in membrane. Orthologous to human TMEM248 (transmembrane protein 248); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; flutamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC288616; MGC94190; similar to 0610007L01Rik protein; UPF0458 protein C7orf42 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,069,113 - 32,093,380 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1232,069,120 - 32,090,634 (-)EnsemblGRCr8
mRatBN7.21226,430,775 - 26,457,105 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,432,953 - 26,457,105 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1227,581,130 - 27,605,088 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,191,638 - 28,215,598 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,249,832 - 27,274,023 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01229,931,728 - 29,958,050 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1229,933,906 - 29,958,050 (-)Ensemblrn6Rnor6.0
Rnor_5.01231,868,600 - 31,895,659 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41227,469,773 - 27,494,475 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1228,147,192 - 28,171,338 (-)NCBICelera
RGSC_v3.11227,332,988 - 27,357,691 (-)NCBI
Cytogenetic Map12q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Tmem248
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,069,113 - 32,093,380 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1232,069,120 - 32,090,634 (-)EnsemblGRCr8
mRatBN7.21226,430,775 - 26,457,105 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,432,953 - 26,457,105 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1227,581,130 - 27,605,088 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,191,638 - 28,215,598 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,249,832 - 27,274,023 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01229,931,728 - 29,958,050 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1229,933,906 - 29,958,050 (-)Ensemblrn6Rnor6.0
Rnor_5.01231,868,600 - 31,895,659 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41227,469,773 - 27,494,475 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1228,147,192 - 28,171,338 (-)NCBICelera
RGSC_v3.11227,332,988 - 27,357,691 (-)NCBI
Cytogenetic Map12q12NCBI
TMEM248
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38766,921,225 - 66,958,551 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl766,921,171 - 66,958,551 (+)Ensemblhg38GRCh38
GRCh37766,386,212 - 66,423,538 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36766,023,638 - 66,060,973 (+)NCBIBuild 36Build 36hg18NCBI36
Celera765,692,669 - 65,730,006 (-)NCBICelera
Cytogenetic Map7q11.21NCBI
HuRef762,569,441 - 62,606,689 (+)NCBIHuRef
CHM1_1766,481,435 - 66,518,775 (+)NCBICHM1_1
T2T-CHM13v2.0768,140,896 - 68,178,227 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2765,723,765 - 65,761,100 (+)NCBI
Tmem248
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395130,248,585 - 130,272,606 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5130,245,922 - 130,272,606 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385130,219,744 - 130,243,765 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5130,217,081 - 130,243,765 (+)Ensemblmm10GRCm38
MGSCv375130,695,614 - 130,719,635 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365130,504,447 - 130,528,468 (+)NCBIMGSCv36mm8
Celera5127,232,694 - 127,256,695 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.91NCBI
Tmem248
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,730,038 - 8,762,549 (+)Ensembl
ChiLan1.0NW_0049554568,730,374 - 8,762,549 (+)NCBIChiLan1.0ChiLan1.0
TMEM248
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2682,210,954 - 82,251,827 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17130,540,867 - 130,578,981 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0759,127,475 - 59,165,406 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1773,954,205 - 73,990,770 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl773,963,370 - 73,990,770 (+)EnsemblpanPan2panpan1.1
TMEM248
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.161,189,540 - 1,223,091 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl61,211,658 - 1,222,768 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha62,889,365 - 2,922,733 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.06995,022 - 1,028,185 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl6995,063 - 1,028,168 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.16929,752 - 963,119 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.06931,809 - 964,983 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.061,103,585 - 1,136,759 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tmem248
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,659,681 - 126,689,995 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365437,346,572 - 7,377,078 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365437,346,572 - 7,377,009 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM248
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,253,022 - 16,280,465 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1316,253,018 - 16,296,796 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2316,504,999 - 16,549,050 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM248
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1282,463,211 - 2,496,414 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl282,482,419 - 2,497,086 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607014,119,716 - 14,155,418 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem248
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,713,354 - 8,723,082 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247408,696,795 - 8,725,769 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tmem248
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11623,739,634 - 23,763,472 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tmem248
158 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:43
Count of miRNA genes:42
Interacting mature miRNAs:42
Transcripts:ENSRNOT00000058725
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771850386405Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122977552242298555Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771849212240Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121874946936488809Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121874946934312613Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)122963663737764351Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743833700556Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001004204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC116246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC090318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000058725   ⟹   ENSRNOP00000055516
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1232,069,120 - 32,090,634 (-)Ensembl
mRatBN7.2 Ensembl1226,432,953 - 26,457,105 (-)Ensembl
Rnor_6.0 Ensembl1229,933,906 - 29,958,050 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086175   ⟹   ENSRNOP00000070412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1232,069,120 - 32,086,904 (-)Ensembl
mRatBN7.2 Ensembl1226,432,953 - 26,451,989 (-)Ensembl
Rnor_6.0 Ensembl1229,933,906 - 29,952,196 (-)Ensembl
RefSeq Acc Id: NM_001004204   ⟹   NP_001004204
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,069,117 - 32,093,268 (-)NCBI
mRatBN7.21226,432,950 - 26,457,105 (-)NCBI
Rnor_6.01229,933,903 - 29,958,050 (-)NCBI
Rnor_5.01231,868,600 - 31,895,659 (-)NCBI
RGSC_v3.41227,469,773 - 27,494,475 (-)RGD
Celera1228,147,192 - 28,171,338 (-)RGD
Sequence:
RefSeq Acc Id: XM_006249230   ⟹   XP_006249292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,069,113 - 32,087,455 (-)NCBI
mRatBN7.21226,430,775 - 26,451,287 (-)NCBI
Rnor_6.01229,931,728 - 29,952,231 (-)NCBI
Rnor_5.01231,868,600 - 31,895,659 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063271160   ⟹   XP_063127230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,069,113 - 32,093,301 (-)NCBI
RefSeq Acc Id: XM_063271161   ⟹   XP_063127231
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,069,113 - 32,093,380 (-)NCBI
RefSeq Acc Id: XM_063271162   ⟹   XP_063127232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,069,113 - 32,093,309 (-)NCBI
RefSeq Acc Id: XM_063271163   ⟹   XP_063127233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,069,113 - 32,086,859 (-)NCBI
RefSeq Acc Id: NP_001004204   ⟸   NM_001004204
- UniProtKB: Q6AY76 (UniProtKB/Swiss-Prot),   A6J0M4 (UniProtKB/TrEMBL),   A0A8L2R2J4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249292   ⟸   XM_006249230
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000055516   ⟸   ENSRNOT00000058725
Ensembl Acc Id: ENSRNOP00000070412   ⟸   ENSRNOT00000086175
RefSeq Acc Id: XP_063127231   ⟸   XM_063271161
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127232   ⟸   XM_063271162
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127230   ⟸   XM_063271160
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127233   ⟸   XM_063271163
- Peptide Label: isoform X1
Protein Domains
TMEM248/TMEM219

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AY76-F1-model_v2 AlphaFold Q6AY76 1-314 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698584
Promoter ID:EPDNEW_R9101
Type:initiation region
Name:Tmem248_1
Description:transmembrane protein 248
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01229,952,210 - 29,952,270EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303319 AgrOrtholog
BioCyc Gene G2FUF-19528 BioCyc
Ensembl Genes ENSRNOG00000000893 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000058725 ENTREZGENE
  ENSRNOT00000058725.3 UniProtKB/Swiss-Prot
  ENSRNOT00000086175 ENTREZGENE
IMAGE_CLONE IMAGE:7113430 IMAGE-MGC_LOAD
  IMAGE:7129411 IMAGE-MGC_LOAD
InterPro TMEM248/TMEM219 UniProtKB/Swiss-Prot
  TMEM248/TMEM219_dom UniProtKB/Swiss-Prot
KEGG Report rno:288616 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105849 IMAGE-MGC_LOAD
  MGC:94190 IMAGE-MGC_LOAD
NCBI Gene 288616 ENTREZGENE
PANTHER PTHR16002 UniProtKB/Swiss-Prot
  TRANSMEMBRANE PROTEIN 248 UniProtKB/Swiss-Prot
Pfam TMEM219 UniProtKB/Swiss-Prot
PhenoGen Tmem248 PhenoGen
RatGTEx ENSRNOG00000000893 RatGTEx
UniProt A0A8L2R2J4 ENTREZGENE, UniProtKB/TrEMBL
  A6J0M4 ENTREZGENE, UniProtKB/TrEMBL
  Q6AY76 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-05 Tmem248  transmembrane protein 248  MGC94190  similar to 0610007L01Rik protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 MGC94190        Symbol and Name status set to provisional 70820 PROVISIONAL